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ENCODE cell lines, expression (Ernst 2011)

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Results for ACUGCAU

Z-value: 0.23

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miRNA associated with seed ACUGCAU

NamemiRBASE accession
hsa-miR-217
MIMAT0000274
hsa-miR-6807-3p
MIMAT0027515

Activity profile of ACUGCAU motif

Sorted Z-values of ACUGCAU motif

Network of associatons between targets according to the STRING database.

First level regulatory network of ACUGCAU

PNG image of the network

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Top targets:

Promoter Score Transcript Gene Gene Info
chr1_+_214161272 0.30 ENST00000498508.2
ENST00000366958.4
 PROX1
 prospero homeobox 1
chr7_-_122526799 0.21 ENST00000334010.7
ENST00000313070.7
 CADPS2
 Ca++-dependent secretion activator 2
chr7_-_111846435 0.15 ENST00000437633.1
ENST00000428084.1
 DOCK4
 dedicator of cytokinesis 4
chr13_+_58206655 0.15 ENST00000377918.3
 PCDH17
 protocadherin 17
chr2_+_235860616 0.15 ENST00000392011.2
 SH3BP4
 SH3-domain binding protein 4
chr12_-_31479045 0.14 ENST00000539409.1
ENST00000395766.1
 FAM60A
 family with sequence similarity 60, member A
chr13_+_27131887 0.13 ENST00000335327.5
 WASF3
 WAS protein family, member 3
chr13_-_72441315 0.13 ENST00000305425.4
ENST00000313174.7
ENST00000354591.4
 DACH1
 dachshund homolog 1 (Drosophila)
chr2_+_118846008 0.13 ENST00000245787.4
 INSIG2
 insulin induced gene 2
chr3_+_173116225 0.12 ENST00000457714.1
 NLGN1
 neuroligin 1
chr5_+_112312416 0.12 ENST00000389063.2
 DCP2
 decapping mRNA 2
chr22_-_29075853 0.12 ENST00000397906.2
 TTC28
 tetratricopeptide repeat domain 28
chr7_-_44924939 0.12 ENST00000395699.2
 PURB
 purine-rich element binding protein B
chr3_-_114790179 0.12 ENST00000462705.1
 ZBTB20
 zinc finger and BTB domain containing 20
chr17_+_58677539 0.12 ENST00000305921.3
 PPM1D
 protein phosphatase, Mg2+/Mn2+ dependent, 1D
chr20_-_50384864 0.11 ENST00000311637.5
ENST00000402822.1
 ATP9A
 ATPase, class II, type 9A
chr4_-_23891693 0.10 ENST00000264867.2
 PPARGC1A
 peroxisome proliferator-activated receptor gamma, coactivator 1 alpha
chr6_-_45345597 0.09 ENST00000371460.1
ENST00000371459.1
 SUPT3H
 suppressor of Ty 3 homolog (S. cerevisiae)
chr20_-_4982132 0.09 ENST00000338244.1
ENST00000424750.2
 SLC23A2
 solute carrier family 23 (ascorbic acid transporter), member 2
chr3_+_40351169 0.09 ENST00000232905.3
 EIF1B
 eukaryotic translation initiation factor 1B
chr1_-_169455169 0.08 ENST00000367804.4
ENST00000236137.5
 SLC19A2
 solute carrier family 19 (thiamine transporter), member 2
chr2_-_24149977 0.08 ENST00000238789.5
 ATAD2B
 ATPase family, AAA domain containing 2B
chr3_-_79068594 0.07 ENST00000436010.2
 ROBO1
 roundabout, axon guidance receptor, homolog 1 (Drosophila)
chr7_+_29234028 0.07 ENST00000222792.6
 CHN2
 chimerin 2
chr20_-_44991813 0.06 ENST00000372227.1
 SLC35C2
 solute carrier family 35 (GDP-fucose transporter), member C2
chr17_+_41052808 0.06 ENST00000592383.1
ENST00000253801.2
ENST00000585489.1
 G6PC
 glucose-6-phosphatase, catalytic subunit
chr1_+_93544791 0.06 ENST00000545708.1
ENST00000540243.1
ENST00000370298.4
 MTF2
 metal response element binding transcription factor 2
chr6_-_52926539 0.06 ENST00000350082.5
ENST00000356971.3
 ICK
 intestinal cell (MAK-like) kinase
chr12_-_110939870 0.06 ENST00000447578.2
ENST00000546588.1
ENST00000360579.7
ENST00000549970.1
ENST00000549578.1
 VPS29
 vacuolar protein sorting 29 homolog (S. cerevisiae)
chr8_+_38614807 0.05 ENST00000330691.6
ENST00000348567.4
 TACC1
 transforming, acidic coiled-coil containing protein 1
chr10_-_98346801 0.05 ENST00000371142.4
 TM9SF3
 transmembrane 9 superfamily member 3
chr1_-_225840747 0.05 ENST00000366843.2
ENST00000366844.3
 ENAH
 enabled homolog (Drosophila)
chr16_+_12995468 0.05 ENST00000424107.3
ENST00000558583.1
ENST00000558318.1
 SHISA9
 shisa family member 9
chr2_+_109335929 0.05 ENST00000283195.6
 RANBP2
 RAN binding protein 2
chr6_+_64281906 0.04 ENST00000370651.3
 PTP4A1
 protein tyrosine phosphatase type IVA, member 1
chr17_-_18266797 0.04 ENST00000316694.3
ENST00000539052.1
 SHMT1
 serine hydroxymethyltransferase 1 (soluble)
chr16_-_66785699 0.04 ENST00000258198.2
 DYNC1LI2
 dynein, cytoplasmic 1, light intermediate chain 2
chr17_-_60142609 0.04 ENST00000397786.2
 MED13
 mediator complex subunit 13
chr22_-_22307199 0.04 ENST00000397495.4
ENST00000263212.5
 PPM1F
 protein phosphatase, Mg2+/Mn2+ dependent, 1F
chr5_+_36876833 0.04 ENST00000282516.8
ENST00000448238.2
 NIPBL
 Nipped-B homolog (Drosophila)
chr3_+_186501336 0.04 ENST00000323963.5
ENST00000440191.2
ENST00000356531.5
 EIF4A2
 eukaryotic translation initiation factor 4A2
chr6_-_99797522 0.04 ENST00000389677.5
 FAXC
 failed axon connections homolog (Drosophila)
chr5_-_137911049 0.03 ENST00000297185.3
 HSPA9
 heat shock 70kDa protein 9 (mortalin)
chr17_-_44896047 0.03 ENST00000225512.5
 WNT3
 wingless-type MMTV integration site family, member 3
chr5_-_168006591 0.03 ENST00000239231.6
 PANK3
 pantothenate kinase 3
chr18_-_74207146 0.03 ENST00000443185.2
 ZNF516
 zinc finger protein 516
chr18_+_55102917 0.03 ENST00000491143.2
 ONECUT2
 one cut homeobox 2
chr3_+_180630090 0.03 ENST00000357559.4
ENST00000305586.7
 FXR1
 fragile X mental retardation, autosomal homolog 1
chrX_+_9983602 0.03 ENST00000380861.4
 WWC3
 WWC family member 3
chr12_-_76478686 0.03 ENST00000261182.8
 NAP1L1
 nucleosome assembly protein 1-like 1
chr11_+_125462690 0.03 ENST00000392708.4
ENST00000529196.1
ENST00000531491.1
 STT3A
 STT3A, subunit of the oligosaccharyltransferase complex (catalytic)
chr12_-_42538657 0.03 ENST00000398675.3
 GXYLT1
 glucoside xylosyltransferase 1
chr14_+_100705322 0.02 ENST00000262238.4
 YY1
 YY1 transcription factor
chr10_+_114709999 0.02 ENST00000355995.4
ENST00000545257.1
ENST00000543371.1
ENST00000536810.1
ENST00000355717.4
ENST00000538897.1
ENST00000534894.1
 TCF7L2
 transcription factor 7-like 2 (T-cell specific, HMG-box)
chr6_+_163835669 0.02 ENST00000453779.2
ENST00000275262.7
ENST00000392127.2
ENST00000361752.3
 QKI
 QKI, KH domain containing, RNA binding
chr11_+_111473108 0.02 ENST00000304987.3
 SIK2
 salt-inducible kinase 2
chr5_-_78809950 0.02 ENST00000334082.6
 HOMER1
 homer homolog 1 (Drosophila)
chr13_-_30424821 0.02 ENST00000380680.4
 UBL3
 ubiquitin-like 3
chr11_-_67980744 0.02 ENST00000401547.2
ENST00000453170.1
ENST00000304363.4
 SUV420H1
 suppressor of variegation 4-20 homolog 1 (Drosophila)
chr6_+_126112001 0.02 ENST00000392477.2
 NCOA7
 nuclear receptor coactivator 7
chr13_+_42622781 0.02 ENST00000337343.4
ENST00000261491.5
ENST00000379274.2
 DGKH
 diacylglycerol kinase, eta
chr10_+_69644404 0.02 ENST00000212015.6
 SIRT1
 sirtuin 1
chr9_-_74980113 0.02 ENST00000376962.5
ENST00000376960.4
ENST00000237937.3
 ZFAND5
 zinc finger, AN1-type domain 5
chr2_+_178077477 0.02 ENST00000411529.2
ENST00000435711.1
 HNRNPA3
 heterogeneous nuclear ribonucleoprotein A3
chr1_+_27022485 0.02 ENST00000324856.7
 ARID1A
 AT rich interactive domain 1A (SWI-like)
chr6_-_166796461 0.02 ENST00000360961.6
ENST00000341756.6
 MPC1
 mitochondrial pyruvate carrier 1
chr10_+_89622870 0.02 ENST00000371953.3
 PTEN
 phosphatase and tensin homolog
chr15_+_44829255 0.02 ENST00000261868.5
ENST00000424492.3
 EIF3J
 eukaryotic translation initiation factor 3, subunit J
chr20_-_48099182 0.02 ENST00000371741.4
 KCNB1
 potassium voltage-gated channel, Shab-related subfamily, member 1
chr20_+_3451650 0.02 ENST00000262919.5
 ATRN
 attractin
chr17_+_60536002 0.02 ENST00000582809.1
 TLK2
 tousled-like kinase 2
chr6_+_119215308 0.02 ENST00000229595.5
 ASF1A
 anti-silencing function 1A histone chaperone
chr3_-_167813672 0.02 ENST00000470487.1
 GOLIM4
 golgi integral membrane protein 4
chr11_+_107461948 0.02 ENST00000265840.7
ENST00000443271.2
 ELMOD1
 ELMO/CED-12 domain containing 1
chr9_-_127703333 0.02 ENST00000373555.4
 GOLGA1
 golgin A1
chr9_-_15510989 0.02 ENST00000380715.1
ENST00000380716.4
ENST00000380738.4
ENST00000380733.4
 PSIP1
 PC4 and SFRS1 interacting protein 1
chr17_-_58603568 0.02 ENST00000083182.3
 APPBP2
 amyloid beta precursor protein (cytoplasmic tail) binding protein 2
chr5_-_130970723 0.02 ENST00000308008.6
ENST00000296859.6
ENST00000507093.1
ENST00000510071.1
ENST00000509018.1
ENST00000307984.5
 RAPGEF6
 Rap guanine nucleotide exchange factor (GEF) 6
chr20_+_1099233 0.02 ENST00000246015.4
ENST00000335877.6
ENST00000438768.2
 PSMF1
 proteasome (prosome, macropain) inhibitor subunit 1 (PI31)
chr3_+_30648066 0.02 ENST00000359013.4
 TGFBR2
 transforming growth factor, beta receptor II (70/80kDa)
chr13_-_53422640 0.02 ENST00000338862.4
ENST00000377942.3
 PCDH8
 protocadherin 8
chr4_+_57774042 0.01 ENST00000309042.7
 REST
 RE1-silencing transcription factor
chr8_-_103876965 0.01 ENST00000337198.5
 AZIN1
 antizyme inhibitor 1
chr1_-_70671216 0.01 ENST00000370952.3
 LRRC40
 leucine rich repeat containing 40
chr1_-_244615425 0.01 ENST00000366535.3
 ADSS
 adenylosuccinate synthase
chr2_+_9346892 0.01 ENST00000281419.3
ENST00000315273.4
 ASAP2
 ArfGAP with SH3 domain, ankyrin repeat and PH domain 2
chr1_+_229406847 0.01 ENST00000366690.4
 RAB4A
 RAB4A, member RAS oncogene family
chrX_+_70316005 0.01 ENST00000374259.3
 FOXO4
 forkhead box O4
chr19_-_47616992 0.01 ENST00000253048.5
 ZC3H4
 zinc finger CCCH-type containing 4
chr13_+_33160553 0.01 ENST00000315596.10
 PDS5B
 PDS5, regulator of cohesion maintenance, homolog B (S. cerevisiae)
chr2_-_86564776 0.01 ENST00000165698.5
ENST00000541910.1
ENST00000535845.1
 REEP1
 receptor accessory protein 1
chr16_+_56965960 0.01 ENST00000439977.2
ENST00000344114.4
ENST00000300302.5
ENST00000379792.2
 HERPUD1
 homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1
chr16_+_7382745 0.01 ENST00000436368.2
ENST00000311745.5
ENST00000355637.4
ENST00000340209.4
 RBFOX1
 RNA binding protein, fox-1 homolog (C. elegans) 1
chr10_-_27443155 0.01 ENST00000427324.1
ENST00000326799.3
 YME1L1
 YME1-like 1 ATPase
chr20_+_62496596 0.01 ENST00000369927.4
ENST00000346249.4
ENST00000348257.5
ENST00000352482.4
ENST00000351424.4
ENST00000217121.5
ENST00000358548.4
 TPD52L2
 tumor protein D52-like 2
chr2_+_169312350 0.01 ENST00000305747.6
 CERS6
 ceramide synthase 6
chr5_+_137801160 0.01 ENST00000239938.4
 EGR1
 early growth response 1
chr15_+_57210818 0.01 ENST00000438423.2
ENST00000267811.5
ENST00000452095.2
ENST00000559609.1
ENST00000333725.5
 TCF12
 transcription factor 12
chr4_-_42659102 0.01 ENST00000264449.10
ENST00000510289.1
ENST00000381668.5
 ATP8A1
 ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1
chr2_+_99953816 0.01 ENST00000289371.6
 EIF5B
 eukaryotic translation initiation factor 5B
chr10_+_104678032 0.01 ENST00000369878.4
ENST00000369875.3
 CNNM2
 cyclin M2
chr17_+_30264014 0.01 ENST00000322652.5
ENST00000580398.1
 SUZ12
 SUZ12 polycomb repressive complex 2 subunit
chrX_-_131352152 0.01 ENST00000342983.2
 RAP2C
 RAP2C, member of RAS oncogene family
chr17_+_29421900 0.01 ENST00000358273.4
ENST00000356175.3
 NF1
 neurofibromin 1
chr3_+_196594727 0.01 ENST00000445299.2
ENST00000323460.5
ENST00000419026.1
 SENP5
 SUMO1/sentrin specific peptidase 5
chr1_+_151584544 0.01 ENST00000458013.2
ENST00000368843.3
 SNX27
 sorting nexin family member 27
chr5_-_131132658 0.01 ENST00000514667.1
ENST00000511848.1
ENST00000510461.1
 CTC-432M15.3
FNIP1
 Folliculin-interacting protein 1
folliculin interacting protein 1
chr4_-_66536057 0.01 ENST00000273854.3
 EPHA5
 EPH receptor A5
chr3_-_21792838 0.01 ENST00000281523.2
 ZNF385D
 zinc finger protein 385D
chr6_-_79944336 0.01 ENST00000344726.5
ENST00000275036.7
 HMGN3
 high mobility group nucleosomal binding domain 3
chr3_-_101232019 0.01 ENST00000394095.2
ENST00000394091.1
ENST00000394094.2
ENST00000358203.3
ENST00000348610.3
ENST00000314261.7
 SENP7
 SUMO1/sentrin specific peptidase 7
chr1_-_57889687 0.00 ENST00000371236.2
ENST00000371230.1
 DAB1
 Dab, reelin signal transducer, homolog 1 (Drosophila)
chr8_-_29940628 0.00 ENST00000545648.1
ENST00000256255.6
 TMEM66
 transmembrane protein 66
chr2_+_166095898 0.00 ENST00000424833.1
ENST00000375437.2
ENST00000357398.3
 SCN2A
 sodium channel, voltage-gated, type II, alpha subunit
chr2_-_74570520 0.00 ENST00000394019.2
ENST00000346834.4
ENST00000359484.4
ENST00000423644.1
ENST00000377634.4
ENST00000436454.1
 SLC4A5
 solute carrier family 4 (sodium bicarbonate cotransporter), member 5
chr19_+_41768401 0.00 ENST00000352456.3
ENST00000595018.1
ENST00000597725.1
 HNRNPUL1
 heterogeneous nuclear ribonucleoprotein U-like 1
chr12_-_92539614 0.00 ENST00000256015.3
 BTG1
 B-cell translocation gene 1, anti-proliferative
chr9_+_33025209 0.00 ENST00000330899.4
ENST00000544625.1
 DNAJA1
 DnaJ (Hsp40) homolog, subfamily A, member 1
chr9_+_129677039 0.00 ENST00000259351.5
ENST00000424082.2
ENST00000394022.3
ENST00000394011.3
ENST00000319107.4
 RALGPS1
 Ral GEF with PH domain and SH3 binding motif 1
chr1_-_24306798 0.00 ENST00000374452.5
ENST00000492112.2
ENST00000343255.5
ENST00000344989.6
 SRSF10
 serine/arginine-rich splicing factor 10
chr8_+_1449532 0.00 ENST00000421627.2
 DLGAP2
 discs, large (Drosophila) homolog-associated protein 2
chr15_+_41709302 0.00 ENST00000389629.4
 RTF1
 Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)
chr1_-_233431458 0.00 ENST00000258229.9
ENST00000430153.1
 PCNXL2
 pecanex-like 2 (Drosophila)
chr2_-_69870835 0.00 ENST00000409085.4
ENST00000406297.3
 AAK1
 AP2 associated kinase 1
chrX_+_118108571 0.00 ENST00000304778.7
 LONRF3
 LON peptidase N-terminal domain and ring finger 3
chr16_-_53737795 0.00 ENST00000262135.4
ENST00000564374.1
ENST00000566096.1
 RPGRIP1L
 RPGRIP1-like
chr2_+_148602058 0.00 ENST00000241416.7
ENST00000535787.1
ENST00000404590.1
 ACVR2A
 activin A receptor, type IIA
chr4_+_144257915 0.00 ENST00000262995.4
 GAB1
 GRB2-associated binding protein 1
chr6_+_108881012 0.00 ENST00000343882.6
 FOXO3
 forkhead box O3
chr1_+_244816237 0.00 ENST00000302550.11
 DESI2
 desumoylating isopeptidase 2
chr3_-_48342795 0.00 ENST00000452211.1
ENST00000447724.1
ENST00000415053.1
ENST00000425930.1
ENST00000421967.1
ENST00000426723.1
ENST00000450160.1
ENST00000456495.1
ENST00000435684.1
ENST00000447314.1
ENST00000415644.1
ENST00000442597.1
 NME6
 NME/NM23 nucleoside diphosphate kinase 6
chr3_+_11314099 0.00 ENST00000446450.2
ENST00000354956.5
ENST00000354449.3
ENST00000419112.1
 ATG7
 autophagy related 7
chr3_+_113465866 0.00 ENST00000273398.3
ENST00000538620.1
ENST00000496747.1
ENST00000475322.1
 ATP6V1A
 ATPase, H+ transporting, lysosomal 70kDa, V1 subunit A

Gene Ontology Analysis

Gene overrepresentation in molecular_function category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.3 GO:0050692 DBD domain binding(GO:0050692)
0.0 0.1 GO:0008523 sodium-dependent multivitamin transmembrane transporter activity(GO:0008523)
0.0 0.1 GO:0015403 thiamine transmembrane transporter activity(GO:0015234) thiamine uptake transmembrane transporter activity(GO:0015403)
0.0 0.1 GO:0004346 glucose-6-phosphatase activity(GO:0004346) sugar-terminal-phosphatase activity(GO:0050309)
0.0 0.1 GO:0050072 m7G(5')pppN diphosphatase activity(GO:0050072)
0.0 0.1 GO:0008046 axon guidance receptor activity(GO:0008046)

Gene overrepresentation in biological_process category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.3 GO:0046619 optic placode formation involved in camera-type eye formation(GO:0046619)
0.0 0.3 GO:2000807 regulation of synaptic vesicle clustering(GO:2000807)
0.0 0.1 GO:2000182 regulation of progesterone biosynthetic process(GO:2000182)
0.0 0.2 GO:1990504 dense core granule exocytosis(GO:1990504)
0.0 0.2 GO:0045906 negative regulation of vasoconstriction(GO:0045906)
0.0 0.1 GO:0071934 thiamine transport(GO:0015888) thiamine transmembrane transport(GO:0071934)
0.0 0.1 GO:0021827 cerebral cortex tangential migration using cell-cell interactions(GO:0021823) postnatal olfactory bulb interneuron migration(GO:0021827) chemorepulsion involved in postnatal olfactory bulb interneuron migration(GO:0021836) regulation of negative chemotaxis(GO:0050923)
0.0 0.1 GO:0000290 deadenylation-dependent decapping of nuclear-transcribed mRNA(GO:0000290)
0.0 0.1 GO:0060244 negative regulation of cell proliferation involved in contact inhibition(GO:0060244)
0.0 0.0 GO:0090526 regulation of gluconeogenesis involved in cellular glucose homeostasis(GO:0090526)
0.0 0.0 GO:1904481 response to tetrahydrofolate(GO:1904481) cellular response to tetrahydrofolate(GO:1904482)
0.0 0.1 GO:0035720 intraciliary anterograde transport(GO:0035720)
0.0 0.0 GO:0061010 gall bladder development(GO:0061010)
0.0 0.1 GO:0035461 vitamin transmembrane transport(GO:0035461)
0.0 0.1 GO:0060363 cranial suture morphogenesis(GO:0060363)
0.0 0.0 GO:0044339 canonical Wnt signaling pathway involved in osteoblast differentiation(GO:0044339) Spemann organizer formation(GO:0060061)

Gene overrepresentation in cellular_component category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.1 GO:0032937 SREBP-SCAP-Insig complex(GO:0032937)
0.0 0.1 GO:0030906 retromer, cargo-selective complex(GO:0030906)