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ENCODE cell lines, expression (Ernst 2011)

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Results for CCAGCAU

Z-value: 0.31

Motif logo

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miRNA associated with seed CCAGCAU

NamemiRBASE accession
hsa-miR-338-3p
MIMAT0000763

Activity profile of CCAGCAU motif

Sorted Z-values of CCAGCAU motif

Network of associatons between targets according to the STRING database.

First level regulatory network of CCAGCAU

PNG image of the network

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Top targets:

Promoter Score Transcript Gene Gene Info
chr7_-_87849340 0.50 ENST00000419179.1
ENST00000265729.2
 SRI
 sorcin
chrX_+_64887512 0.46 ENST00000360270.5
 MSN
 moesin
chr15_+_39873268 0.39 ENST00000397591.2
ENST00000260356.5
 THBS1
 thrombospondin 1
chr18_-_53255766 0.26 ENST00000566286.1
ENST00000564999.1
ENST00000566279.1
ENST00000354452.3
ENST00000356073.4
 TCF4
 transcription factor 4
chr5_+_86564739 0.25 ENST00000456692.2
ENST00000512763.1
ENST00000506290.1
 RASA1
 RAS p21 protein activator (GTPase activating protein) 1
chr15_+_85359911 0.19 ENST00000258888.5
 ALPK3
 alpha-kinase 3
chr10_-_33623564 0.18 ENST00000374875.1
ENST00000374822.4
 NRP1
 neuropilin 1
chr15_+_92396920 0.17 ENST00000318445.6
 SLCO3A1
 solute carrier organic anion transporter family, member 3A1
chr6_+_21593972 0.16 ENST00000244745.1
ENST00000543472.1
 SOX4
 SRY (sex determining region Y)-box 4
chr10_-_126849068 0.16 ENST00000494626.2
ENST00000337195.5
 CTBP2
 C-terminal binding protein 2
chr11_+_4116005 0.15 ENST00000300738.5
 RRM1
 ribonucleotide reductase M1
chr5_+_61602055 0.14 ENST00000381103.2
 KIF2A
 kinesin heavy chain member 2A
chr11_+_113930291 0.12 ENST00000335953.4
 ZBTB16
 zinc finger and BTB domain containing 16
chr3_-_9291063 0.12 ENST00000383836.3
 SRGAP3
 SLIT-ROBO Rho GTPase activating protein 3
chr6_+_16238786 0.11 ENST00000259727.4
 GMPR
 guanosine monophosphate reductase
chr1_-_154531095 0.11 ENST00000292211.4
 UBE2Q1
 ubiquitin-conjugating enzyme E2Q family member 1
chr3_-_134093395 0.11 ENST00000249883.5
 AMOTL2
 angiomotin like 2
chr17_-_4269768 0.10 ENST00000396981.2
 UBE2G1
 ubiquitin-conjugating enzyme E2G 1
chr4_-_55991752 0.10 ENST00000263923.4
 KDR
 kinase insert domain receptor (a type III receptor tyrosine kinase)
chr10_+_105726862 0.09 ENST00000335753.4
ENST00000369755.3
 SLK
 STE20-like kinase
chr3_+_118892362 0.09 ENST00000497685.1
ENST00000264234.3
 UPK1B
 uroplakin 1B
chr12_-_4647606 0.09 ENST00000261250.3
ENST00000541014.1
ENST00000545746.1
ENST00000542080.1
 C12orf4
 chromosome 12 open reading frame 4
chr22_-_22221900 0.09 ENST00000215832.6
ENST00000398822.3
 MAPK1
 mitogen-activated protein kinase 1
chr5_-_107006596 0.09 ENST00000333274.6
 EFNA5
 ephrin-A5
chr15_-_75249793 0.08 ENST00000322177.5
 RPP25
 ribonuclease P/MRP 25kDa subunit
chr18_-_9614515 0.08 ENST00000400556.3
ENST00000400555.3
 PPP4R1
 protein phosphatase 4, regulatory subunit 1
chr7_+_98972298 0.08 ENST00000252725.5
 ARPC1B
 actin related protein 2/3 complex, subunit 1B, 41kDa
chr1_+_7831323 0.08 ENST00000054666.6
 VAMP3
 vesicle-associated membrane protein 3
chr11_-_10562710 0.08 ENST00000528665.1
ENST00000265981.2
 RNF141
 ring finger protein 141
chr5_-_126366500 0.08 ENST00000308660.5
 MARCH3
 membrane-associated ring finger (C3HC4) 3, E3 ubiquitin protein ligase
chr14_+_103243813 0.08 ENST00000560371.1
ENST00000347662.4
ENST00000392745.2
ENST00000539721.1
ENST00000560463.1
 TRAF3
 TNF receptor-associated factor 3
chr1_+_153606513 0.07 ENST00000368694.3
 CHTOP
 chromatin target of PRMT1
chr6_+_63921351 0.07 ENST00000370659.1
 FKBP1C
 FK506 binding protein 1C
chr3_-_176914238 0.07 ENST00000430069.1
ENST00000428970.1
 TBL1XR1
 transducin (beta)-like 1 X-linked receptor 1
chr12_-_57400227 0.06 ENST00000300101.2
 ZBTB39
 zinc finger and BTB domain containing 39
chr1_+_201798269 0.06 ENST00000361565.4
 IPO9
 importin 9
chr8_-_98290087 0.06 ENST00000322128.3
 TSPYL5
 TSPY-like 5
chr3_+_100428268 0.06 ENST00000240851.4
 TFG
 TRK-fused gene
chr4_-_149365827 0.06 ENST00000344721.4
 NR3C2
 nuclear receptor subfamily 3, group C, member 2
chr7_-_25019760 0.06 ENST00000352860.1
ENST00000353930.1
ENST00000431825.2
ENST00000313367.2
 OSBPL3
 oxysterol binding protein-like 3
chr1_+_154975110 0.05 ENST00000535420.1
ENST00000368426.3
 ZBTB7B
 zinc finger and BTB domain containing 7B
chr12_+_62654119 0.05 ENST00000353364.3
ENST00000549523.1
ENST00000280377.5
 USP15
 ubiquitin specific peptidase 15
chr15_+_45422131 0.05 ENST00000321429.4
 DUOX1
 dual oxidase 1
chrX_+_109246285 0.05 ENST00000372073.1
ENST00000372068.2
ENST00000288381.4
 TMEM164
 transmembrane protein 164
chr14_+_67826709 0.05 ENST00000256383.4
 EIF2S1
 eukaryotic translation initiation factor 2, subunit 1 alpha, 35kDa
chr8_+_120079478 0.05 ENST00000332843.2
 COLEC10
 collectin sub-family member 10 (C-type lectin)
chr14_+_65171099 0.05 ENST00000247226.7
 PLEKHG3
 pleckstrin homology domain containing, family G (with RhoGef domain) member 3
chr3_-_179754706 0.05 ENST00000465751.1
ENST00000467460.1
 PEX5L
 peroxisomal biogenesis factor 5-like
chr3_-_135914615 0.04 ENST00000309993.2
 MSL2
 male-specific lethal 2 homolog (Drosophila)
chr17_+_61086917 0.04 ENST00000424789.2
ENST00000389520.4
 TANC2
 tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2
chr3_+_51422478 0.04 ENST00000528157.1
 MANF
 mesencephalic astrocyte-derived neurotrophic factor
chr19_+_1752372 0.04 ENST00000382349.4
 ONECUT3
 one cut homeobox 3
chr20_-_39317868 0.04 ENST00000373313.2
 MAFB
 v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog B
chr8_+_6565854 0.04 ENST00000285518.6
 AGPAT5
 1-acylglycerol-3-phosphate O-acyltransferase 5
chr7_+_139044621 0.04 ENST00000354926.4
 C7orf55-LUC7L2
 C7orf55-LUC7L2 readthrough
chr13_-_107220455 0.04 ENST00000400198.3
 ARGLU1
 arginine and glutamate rich 1
chr20_-_1373726 0.04 ENST00000400137.4
 FKBP1A
 FK506 binding protein 1A, 12kDa
chr17_+_30677136 0.04 ENST00000394670.4
ENST00000321233.6
ENST00000394673.2
ENST00000341711.6
ENST00000579634.1
ENST00000580759.1
ENST00000342555.6
ENST00000577908.1
ENST00000394679.5
ENST00000582165.1
 ZNF207
 zinc finger protein 207
chr4_+_41992489 0.04 ENST00000264451.7
 SLC30A9
 solute carrier family 30 (zinc transporter), member 9
chr4_+_39699664 0.04 ENST00000261427.5
ENST00000510934.1
ENST00000295963.6
 UBE2K
 ubiquitin-conjugating enzyme E2K
chr3_+_238273 0.03 ENST00000256509.2
 CHL1
 cell adhesion molecule L1-like
chr1_-_78148324 0.03 ENST00000370801.3
ENST00000433749.1
 ZZZ3
 zinc finger, ZZ-type containing 3
chr1_-_35658736 0.03 ENST00000357214.5
 SFPQ
 splicing factor proline/glutamine-rich
chr7_-_14942944 0.03 ENST00000403951.2
 DGKB
 diacylglycerol kinase, beta 90kDa
chr1_-_38273840 0.03 ENST00000373044.2
 YRDC
 yrdC N(6)-threonylcarbamoyltransferase domain containing
chr9_-_80646374 0.03 ENST00000286548.4
 GNAQ
 guanine nucleotide binding protein (G protein), q polypeptide
chrX_-_54522558 0.03 ENST00000375135.3
 FGD1
 FYVE, RhoGEF and PH domain containing 1
chr12_-_54982420 0.03 ENST00000257905.8
 PPP1R1A
 protein phosphatase 1, regulatory (inhibitor) subunit 1A
chr7_+_77166592 0.03 ENST00000248594.6
 PTPN12
 protein tyrosine phosphatase, non-receptor type 12
chr20_-_41818373 0.03 ENST00000373187.1
ENST00000356100.2
ENST00000373184.1
ENST00000373190.1
 PTPRT
 protein tyrosine phosphatase, receptor type, T
chr10_-_75634260 0.03 ENST00000372765.1
ENST00000351293.3
 CAMK2G
 calcium/calmodulin-dependent protein kinase II gamma
chr16_+_68771128 0.03 ENST00000261769.5
ENST00000422392.2
 CDH1
 cadherin 1, type 1, E-cadherin (epithelial)
chr12_-_10875831 0.03 ENST00000279550.7
ENST00000228251.4
 YBX3
 Y box binding protein 3
chr2_-_152684977 0.03 ENST00000428992.2
ENST00000295087.8
 ARL5A
 ADP-ribosylation factor-like 5A
chr20_+_51588873 0.03 ENST00000371497.5
 TSHZ2
 teashirt zinc finger homeobox 2
chr12_-_102874416 0.03 ENST00000392904.1
ENST00000337514.6
 IGF1
 insulin-like growth factor 1 (somatomedin C)
chr6_-_116601044 0.03 ENST00000368608.3
 TSPYL1
 TSPY-like 1
chr7_-_26240357 0.03 ENST00000354667.4
ENST00000356674.7
 HNRNPA2B1
 heterogeneous nuclear ribonucleoprotein A2/B1
chr2_-_25475120 0.03 ENST00000380746.4
ENST00000402667.1
 DNMT3A
 DNA (cytosine-5-)-methyltransferase 3 alpha
chr5_+_140560980 0.03 ENST00000361016.2
 PCDHB16
 protocadherin beta 16
chr5_+_141488070 0.03 ENST00000253814.4
 NDFIP1
 Nedd4 family interacting protein 1
chr10_-_105615164 0.03 ENST00000355946.2
ENST00000369774.4
 SH3PXD2A
 SH3 and PX domains 2A
chr1_+_244214577 0.02 ENST00000358704.4
 ZBTB18
 zinc finger and BTB domain containing 18
chr1_-_51763661 0.02 ENST00000530004.1
 TTC39A
 tetratricopeptide repeat domain 39A
chr4_-_168155730 0.02 ENST00000502330.1
ENST00000357154.3
 SPOCK3
 sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3
chr14_-_76127519 0.02 ENST00000256319.6
 C14orf1
 chromosome 14 open reading frame 1
chr20_+_20348740 0.02 ENST00000310227.1
 INSM1
 insulinoma-associated 1
chr16_-_79634595 0.02 ENST00000326043.4
ENST00000393350.1
 MAF
 v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog
chr17_-_48474828 0.02 ENST00000576448.1
ENST00000225972.7
 LRRC59
 leucine rich repeat containing 59
chr2_+_210444142 0.02 ENST00000360351.4
ENST00000361559.4
 MAP2
 microtubule-associated protein 2
chr10_-_70287231 0.02 ENST00000609923.1
 SLC25A16
 solute carrier family 25 (mitochondrial carrier; Graves disease autoantigen), member 16
chr2_+_48010221 0.02 ENST00000234420.5
 MSH6
 mutS homolog 6
chr5_+_43602750 0.02 ENST00000505678.2
ENST00000512422.1
ENST00000264663.5
 NNT
 nicotinamide nucleotide transhydrogenase
chrX_-_119445263 0.02 ENST00000309720.5
 TMEM255A
 transmembrane protein 255A
chr1_-_51425902 0.02 ENST00000396153.2
 FAF1
 Fas (TNFRSF6) associated factor 1
chr2_-_182545603 0.02 ENST00000295108.3
 NEUROD1
 neuronal differentiation 1
chr12_+_65563329 0.02 ENST00000308330.2
 LEMD3
 LEM domain containing 3
chr9_-_123964114 0.02 ENST00000373840.4
 RAB14
 RAB14, member RAS oncogene family
chr11_+_119076745 0.01 ENST00000264033.4
 CBL
 Cbl proto-oncogene, E3 ubiquitin protein ligase
chr9_-_111929560 0.01 ENST00000561981.2
 FRRS1L
 ferric-chelate reductase 1-like
chr13_-_77900814 0.01 ENST00000544440.2
 MYCBP2
 MYC binding protein 2, E3 ubiquitin protein ligase
chr16_-_20911641 0.01 ENST00000564349.1
ENST00000324344.4
 ERI2
DCUN1D3
 ERI1 exoribonuclease family member 2
DCN1, defective in cullin neddylation 1, domain containing 3
chr9_-_37465396 0.01 ENST00000307750.4
 ZBTB5
 zinc finger and BTB domain containing 5
chr8_+_77593448 0.01 ENST00000521891.2
 ZFHX4
 zinc finger homeobox 4
chr12_+_69864129 0.01 ENST00000547219.1
ENST00000299293.2
ENST00000549921.1
ENST00000550316.1
ENST00000548154.1
ENST00000547414.1
ENST00000550389.1
ENST00000550937.1
ENST00000549092.1
ENST00000550169.1
 FRS2
 fibroblast growth factor receptor substrate 2
chr15_+_79165151 0.01 ENST00000331268.5
 MORF4L1
 mortality factor 4 like 1
chr1_+_164528866 0.01 ENST00000420696.2
 PBX1
 pre-B-cell leukemia homeobox 1
chr10_-_102279586 0.01 ENST00000370345.3
ENST00000451524.1
ENST00000370329.5
 SEC31B
 SEC31 homolog B (S. cerevisiae)
chrX_+_70586082 0.01 ENST00000373790.4
ENST00000449580.1
ENST00000423759.1
 TAF1
 TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 250kDa
chr21_+_34915337 0.01 ENST00000290239.6
ENST00000381692.2
ENST00000300278.4
ENST00000381679.4
 SON
 SON DNA binding protein
chr7_-_20256965 0.01 ENST00000400331.5
ENST00000332878.4
 MACC1
 metastasis associated in colon cancer 1
chr12_-_113574028 0.01 ENST00000546530.1
ENST00000261729.5
 RASAL1
 RAS protein activator like 1 (GAP1 like)
chr12_+_72233487 0.01 ENST00000482439.2
ENST00000550746.1
ENST00000491063.1
ENST00000319106.8
ENST00000485960.2
ENST00000393309.3
 TBC1D15
 TBC1 domain family, member 15
chr21_+_44394620 0.01 ENST00000291547.5
 PKNOX1
 PBX/knotted 1 homeobox 1
chr22_-_44258360 0.00 ENST00000330884.4
ENST00000249130.5
 SULT4A1
 sulfotransferase family 4A, member 1
chr9_+_140032842 0.00 ENST00000371561.3
ENST00000315048.3
 GRIN1
 glutamate receptor, ionotropic, N-methyl D-aspartate 1
chr2_-_69870835 0.00 ENST00000409085.4
ENST00000406297.3
 AAK1
 AP2 associated kinase 1
chr2_-_105946491 0.00 ENST00000393359.2
 TGFBRAP1
 transforming growth factor, beta receptor associated protein 1
chr14_-_36989427 0.00 ENST00000354822.5
 NKX2-1
 NK2 homeobox 1
chr1_-_154155595 0.00 ENST00000328159.4
ENST00000368531.2
ENST00000323144.7
ENST00000368533.3
ENST00000341372.3
 TPM3
 tropomyosin 3
chr2_-_96811170 0.00 ENST00000288943.4
 DUSP2
 dual specificity phosphatase 2

Gene Ontology Analysis

Gene overrepresentation in molecular_function category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.4 GO:0070052 collagen V binding(GO:0070052)
0.0 0.1 GO:0016728 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor(GO:0004748) oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor(GO:0016728) ribonucleoside-diphosphate reductase activity(GO:0061731)
0.0 0.1 GO:0005169 neurotrophin TRKB receptor binding(GO:0005169)
0.0 0.3 GO:0005021 vascular endothelial growth factor-activated receptor activity(GO:0005021)
0.0 0.2 GO:0016618 hydroxypyruvate reductase activity(GO:0016618) glyoxylate reductase (NADP) activity(GO:0030267)
0.0 0.3 GO:0001011 transcription factor activity, sequence-specific DNA binding, RNA polymerase recruiting(GO:0001011) transcription factor activity, TFIIB-class binding(GO:0001087)
0.0 0.1 GO:0003920 GMP reductase activity(GO:0003920) oxidoreductase activity, acting on NAD(P)H, nitrogenous group as acceptor(GO:0016657)
0.0 0.2 GO:0019870 potassium channel inhibitor activity(GO:0019870)
0.0 0.5 GO:0004198 calcium-dependent cysteine-type endopeptidase activity(GO:0004198)
0.0 0.1 GO:0001206 transcriptional repressor activity, RNA polymerase II distal enhancer sequence-specific binding(GO:0001206)

Gene overrepresentation in cellular_component category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.5 GO:0044326 dendritic spine neck(GO:0044326)
0.0 0.1 GO:0005971 ribonucleoside-diphosphate reductase complex(GO:0005971)
0.0 0.4 GO:0005577 fibrinogen complex(GO:0005577)
0.0 0.1 GO:0030289 protein phosphatase 4 complex(GO:0030289)
0.0 0.3 GO:0097443 sorting endosome(GO:0097443)
0.0 0.5 GO:0031254 uropod(GO:0001931) cell trailing edge(GO:0031254)
0.0 0.1 GO:1902560 GMP reductase complex(GO:1902560)
0.0 0.0 GO:0005850 eukaryotic translation initiation factor 2 complex(GO:0005850)
0.0 0.3 GO:0031235 intrinsic component of the cytoplasmic side of the plasma membrane(GO:0031235)
0.0 0.2 GO:0097470 ribbon synapse(GO:0097470)
0.0 0.1 GO:0000172 ribonuclease MRP complex(GO:0000172)

Gene overrepresentation in biological_process category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.4 GO:0002605 negative regulation of antigen processing and presentation of peptide or polysaccharide antigen via MHC class II(GO:0002581) negative regulation of dendritic cell antigen processing and presentation(GO:0002605)
0.1 0.5 GO:0022614 membrane to membrane docking(GO:0022614)
0.1 0.5 GO:0097577 intracellular sequestering of iron ion(GO:0006880) sequestering of iron ion(GO:0097577)
0.0 0.2 GO:0035910 N-terminal peptidyl-lysine acetylation(GO:0018076) ascending aorta development(GO:0035905) ascending aorta morphogenesis(GO:0035910)
0.0 0.2 GO:1905040 vestibulocochlear nerve structural organization(GO:0021649) positive regulation of cytokine activity(GO:0060301) ganglion morphogenesis(GO:0061552) endothelial tip cell fate specification(GO:0097102) VEGF-activated neuropilin signaling pathway involved in axon guidance(GO:1902378) dorsal root ganglion morphogenesis(GO:1904835) otic placode development(GO:1905040)
0.0 0.1 GO:0019858 cytosine metabolic process(GO:0019858)
0.0 0.1 GO:0048133 germ-line stem cell division(GO:0042078) male germ-line stem cell asymmetric division(GO:0048133) positive regulation of NK T cell differentiation(GO:0051138) germline stem cell asymmetric division(GO:0098728)
0.0 0.1 GO:0008063 Toll signaling pathway(GO:0008063)
0.0 0.2 GO:0048386 positive regulation of retinoic acid receptor signaling pathway(GO:0048386)
0.0 0.0 GO:1990737 response to manganese-induced endoplasmic reticulum stress(GO:1990737)
0.0 0.0 GO:0035283 rhombomere 5 development(GO:0021571) central nervous system segmentation(GO:0035283) brain segmentation(GO:0035284)
0.0 0.1 GO:0035616 histone H2B conserved C-terminal lysine deubiquitination(GO:0035616)
0.0 0.1 GO:0042335 cuticle development(GO:0042335)
0.0 0.1 GO:0043376 regulation of CD8-positive, alpha-beta T cell differentiation(GO:0043376)
0.0 0.1 GO:1903593 regulation of histamine secretion by mast cell(GO:1903593)
0.0 0.1 GO:0060613 fat pad development(GO:0060613)
0.0 0.0 GO:0002949 tRNA threonylcarbamoyladenosine modification(GO:0002949)
0.0 0.1 GO:0038033 positive regulation of endothelial cell chemotaxis by VEGF-activated vascular endothelial growth factor receptor signaling pathway(GO:0038033)

Gene overrepresentation in C2:CP:REACTOME category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.3 REACTOME VEGF LIGAND RECEPTOR INTERACTIONS Genes involved in VEGF ligand-receptor interactions
0.0 0.6 REACTOME RECYCLING PATHWAY OF L1 Genes involved in Recycling pathway of L1

Gene overrepresentation in C2:CP category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.3 PID VEGF VEGFR PATHWAY VEGF and VEGFR signaling network