ENCODE cell lines, expression (Ernst 2011)

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
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Gene Symbol	Gene ID	Gene Info
CREB1 Links Ensembl NCBI GeneCards UniProt	ENSG00000118260.10	CREB1

Gene	Promoter	Pearson corr. coef.	P-value	Plot
CREB1	hg19_v2_chr2_+_208394455_208394471	0.27	3.2e-01	Click!

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Promoter	Score	Transcript	Gene	Gene Info
chr6_-_43027105	3.54	ENST00000230413.5 ENST00000487429.1 ENST00000489623.1 ENST00000468957.1	MRPL2	mitochondrial ribosomal protein L2
chr12_+_132628963	3.36	ENST00000330579.1	NOC4L	nucleolar complex associated 4 homolog (S. cerevisiae)
chr18_-_268019	2.68	ENST00000261600.6	THOC1	THO complex 1
chr3_+_45017722	2.56	ENST00000265564.7	EXOSC7	exosome component 7
chr1_-_53704157	2.43	ENST00000371466.4 ENST00000371470.3	MAGOH	mago-nashi homolog, proliferation-associated (Drosophila)
chr16_-_3767506	2.42	ENST00000538171.1	TRAP1	TNF receptor-associated protein 1
chr3_+_185303962	2.42	ENST00000296257.5	SENP2	SUMO1/sentrin/SMT3 specific peptidase 2
chr6_-_31774714	2.36	ENST00000375661.5	LSM2	LSM2 homolog, U6 small nuclear RNA associated (S. cerevisiae)
chr3_+_185304059	2.29	ENST00000427465.2	SENP2	SUMO1/sentrin/SMT3 specific peptidase 2
chr16_-_3767551	2.29	ENST00000246957.5	TRAP1	TNF receptor-associated protein 1
chr11_-_62607036	2.26	ENST00000311713.7 ENST00000278856.4	WDR74	WD repeat domain 74
chr9_+_134000948	2.22	ENST00000359428.5 ENST00000411637.2 ENST00000451030.1	NUP214	nucleoporin 214kDa
chr4_+_39460620	2.14	ENST00000340169.2 ENST00000261434.3	LIAS	lipoic acid synthetase
chr4_+_39460659	2.13	ENST00000513731.1	LIAS	lipoic acid synthetase
chr8_-_37756972	2.11	ENST00000330843.4 ENST00000522727.1 ENST00000287263.4	RAB11FIP1	RAB11 family interacting protein 1 (class I)
chr4_+_39460689	2.06	ENST00000381846.1	LIAS	lipoic acid synthetase
chr6_-_34855773	2.02	ENST00000420584.2 ENST00000361288.4	TAF11	TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 28kDa
chr17_+_8152590	1.99	ENST00000584044.1 ENST00000314666.6 ENST00000545834.1 ENST00000581242.1	PFAS	phosphoribosylformylglycinamidine synthase
chr7_+_23145347	1.94	ENST00000322231.7	KLHL7	kelch-like family member 7
chr6_+_32121789	1.81	ENST00000437001.2 ENST00000375137.2	PPT2	palmitoyl-protein thioesterase 2
chr1_+_12040238	1.74	ENST00000444836.1 ENST00000235329.5	MFN2	mitofusin 2
chr6_+_32121908	1.61	ENST00000375143.2 ENST00000424499.1	PPT2	palmitoyl-protein thioesterase 2
chr2_-_21022818	1.57	ENST00000440866.2 ENST00000541941.1 ENST00000402479.2 ENST00000435420.2 ENST00000432947.1 ENST00000403006.2 ENST00000419825.2 ENST00000381090.3 ENST00000237822.3 ENST00000412261.1	C2orf43	chromosome 2 open reading frame 43
chr15_-_66790146	1.56	ENST00000316634.5	SNAPC5	small nuclear RNA activating complex, polypeptide 5, 19kDa
chr4_-_146019693	1.55	ENST00000514390.1	ANAPC10	anaphase promoting complex subunit 10
chr7_+_23221613	1.49	ENST00000410002.3 ENST00000413919.1	NUPL2	nucleoporin like 2
chr6_-_144416737	1.44	ENST00000367569.2	SF3B5	splicing factor 3b, subunit 5, 10kDa
chr22_+_20105012	1.44	ENST00000331821.3 ENST00000411892.1	RANBP1	RAN binding protein 1
chr22_+_26879817	1.44	ENST00000215917.7	SRRD	SRR1 domain containing
chr12_-_58240470	1.43	ENST00000548823.1 ENST00000398073.2	CTDSP2	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2
chr19_+_10362882	1.43	ENST00000393733.2 ENST00000588502.1	MRPL4	mitochondrial ribosomal protein L4
chr11_+_34127142	1.43	ENST00000257829.3 ENST00000531159.2	NAT10	N-acetyltransferase 10 (GCN5-related)
chr7_+_23145366	1.39	ENST00000339077.5 ENST00000322275.5 ENST00000539124.1 ENST00000542558.1	KLHL7	kelch-like family member 7
chr1_-_229644034	1.38	ENST00000366678.3 ENST00000261396.3 ENST00000537506.1	NUP133	nucleoporin 133kDa
chr19_+_10362577	1.37	ENST00000592514.1 ENST00000307422.5 ENST00000253099.6 ENST00000590150.1 ENST00000590669.1	MRPL4	mitochondrial ribosomal protein L4
chr6_+_41888926	1.36	ENST00000230340.4	BYSL	bystin-like
chr22_-_20104700	1.36	ENST00000439169.2 ENST00000445045.1 ENST00000404751.3 ENST00000252136.7 ENST00000403707.3	TRMT2A	tRNA methyltransferase 2 homolog A (S. cerevisiae)
chr12_+_120884222	1.35	ENST00000551765.1 ENST00000229384.5	GATC	glutamyl-tRNA(Gln) amidotransferase, subunit C
chr9_-_94877658	1.35	ENST00000262554.2 ENST00000337841.4	SPTLC1	serine palmitoyltransferase, long chain base subunit 1
chr1_+_202976493	1.34	ENST00000367242.3	TMEM183A	transmembrane protein 183A
chr7_-_150924121	1.34	ENST00000441774.1 ENST00000222388.2 ENST00000287844.2	ABCF2	ATP-binding cassette, sub-family F (GCN20), member 2
chr19_+_19030478	1.33	ENST00000247003.4	DDX49	DEAD (Asp-Glu-Ala-Asp) box polypeptide 49
chr14_+_61447927	1.32	ENST00000451406.1	SLC38A6	solute carrier family 38, member 6
chr19_+_19030497	1.30	ENST00000438170.2	DDX49	DEAD (Asp-Glu-Ala-Asp) box polypeptide 49
chrX_+_24711997	1.30	ENST00000379068.3 ENST00000379059.3	POLA1	polymerase (DNA directed), alpha 1, catalytic subunit
chr14_+_61447832	1.28	ENST00000354886.2 ENST00000267488.4	SLC38A6	solute carrier family 38, member 6
chr19_-_5719860	1.27	ENST00000590729.1	LONP1	lon peptidase 1, mitochondrial
chr3_-_45017609	1.27	ENST00000342790.4 ENST00000424952.2 ENST00000296127.3 ENST00000455235.1	ZDHHC3	zinc finger, DHHC-type containing 3
chr12_-_104531785	1.27	ENST00000551727.1	NFYB	nuclear transcription factor Y, beta
chr6_+_37400974	1.24	ENST00000455891.1 ENST00000373451.4	CMTR1	cap methyltransferase 1
chr1_-_220219775	1.24	ENST00000609181.1	EPRS	glutamyl-prolyl-tRNA synthetase
chr6_+_20403997	1.22	ENST00000535432.1	E2F3	E2F transcription factor 3
chr8_-_145743164	1.20	ENST00000428558.2	RECQL4	RecQ protein-like 4
chr7_+_23221438	1.19	ENST00000258742.5	NUPL2	nucleoporin like 2
chr10_+_70939983	1.19	ENST00000359655.4 ENST00000422378.1	SUPV3L1	suppressor of var1, 3-like 1 (S. cerevisiae)
chr19_+_54619125	1.17	ENST00000445811.1 ENST00000419967.1 ENST00000445124.1 ENST00000447810.1	PRPF31	pre-mRNA processing factor 31
chr12_-_58165870	1.13	ENST00000257848.7	METTL1	methyltransferase like 1
chr1_+_147400506	1.12	ENST00000314163.7 ENST00000468618.2	GPR89B	G protein-coupled receptor 89B
chr6_-_34664612	1.12	ENST00000374023.3 ENST00000374026.3	C6orf106	chromosome 6 open reading frame 106
chr2_-_68290106	1.12	ENST00000407324.1 ENST00000355848.3 ENST00000409302.1 ENST00000410067.3	C1D	C1D nuclear receptor corepressor
chr7_+_102036798	1.11	ENST00000397912.3 ENST00000354783.4	PRKRIP1	PRKR interacting protein 1 (IL11 inducible)
chr4_-_146019287	1.10	ENST00000502847.1 ENST00000513054.1	ANAPC10	anaphase promoting complex subunit 10
chr11_+_18343800	1.09	ENST00000453096.2	GTF2H1	general transcription factor IIH, polypeptide 1, 62kDa
chr12_-_104532062	1.08	ENST00000240055.3	NFYB	nuclear transcription factor Y, beta
chr14_-_23388338	1.05	ENST00000555209.1 ENST00000554256.1 ENST00000557403.1 ENST00000557549.1 ENST00000555676.1 ENST00000557571.1 ENST00000557464.1 ENST00000554618.1 ENST00000556862.1 ENST00000555722.1 ENST00000346528.5 ENST00000542016.2 ENST00000399922.2 ENST00000557227.1 ENST00000359890.3	RBM23	RNA binding motif protein 23
chr4_-_76439483	1.04	ENST00000380840.2 ENST00000513257.1 ENST00000507014.1	RCHY1	ring finger and CHY zinc finger domain containing 1, E3 ubiquitin protein ligase
chr1_-_202896310	1.04	ENST00000367261.3	KLHL12	kelch-like family member 12
chr1_-_145827015	1.02	ENST00000534502.1 ENST00000313835.9 ENST00000454423.3	GPR89A	G protein-coupled receptor 89A
chr4_+_122722466	1.02	ENST00000243498.5 ENST00000379663.3 ENST00000509800.1	EXOSC9	exosome component 9
chr16_+_19079215	1.01	ENST00000544894.2 ENST00000561858.1	COQ7	coenzyme Q7 homolog, ubiquinone (yeast)
chr19_+_36103631	1.00	ENST00000203166.5 ENST00000379045.2	HAUS5	HAUS augmin-like complex, subunit 5
chr2_-_242626127	1.00	ENST00000445261.1	DTYMK	deoxythymidylate kinase (thymidylate kinase)
chr12_-_132628847	1.00	ENST00000397333.3	DDX51	DEAD (Asp-Glu-Ala-Asp) box polypeptide 51
chr1_-_115259337	0.99	ENST00000369535.4	NRAS	neuroblastoma RAS viral (v-ras) oncogene homolog
chr9_-_134955246	0.99	ENST00000357028.2 ENST00000474263.1 ENST00000292035.5	MED27	mediator complex subunit 27
chr21_-_44299626	0.98	ENST00000330317.2 ENST00000398208.2	WDR4	WD repeat domain 4
chrX_+_24072833	0.97	ENST00000253039.4	EIF2S3	eukaryotic translation initiation factor 2, subunit 3 gamma, 52kDa
chr5_-_132113036	0.96	ENST00000378706.1	SEPT8	septin 8
chr8_-_17104356	0.96	ENST00000361272.4 ENST00000523917.1	CNOT7	CCR4-NOT transcription complex, subunit 7
chr17_-_685559	0.96	ENST00000301329.6	GLOD4	glyoxalase domain containing 4
chr7_+_44646218	0.93	ENST00000444676.1 ENST00000222673.5	OGDH	oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide)
chr11_+_67195917	0.93	ENST00000524934.1 ENST00000539188.1 ENST00000312629.5	RPS6KB2	ribosomal protein S6 kinase, 70kDa, polypeptide 2
chr1_-_220220000	0.93	ENST00000366923.3	EPRS	glutamyl-prolyl-tRNA synthetase
chr16_+_70380732	0.92	ENST00000302243.7	DDX19A	DEAD (Asp-Glu-Ala-Asp) box polypeptide 19A
chr1_-_109940550	0.91	ENST00000256637.6	SORT1	sortilin 1
chr11_+_57480046	0.90	ENST00000378312.4 ENST00000278422.4	TMX2	thioredoxin-related transmembrane protein 2
chr11_-_64889649	0.90	ENST00000434372.2	FAU	Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed
chr5_-_132113083	0.90	ENST00000296873.7	SEPT8	septin 8
chr4_-_146019335	0.89	ENST00000451299.2 ENST00000507656.1 ENST00000309439.5	ANAPC10	anaphase promoting complex subunit 10
chr6_-_41888843	0.89	ENST00000434077.1 ENST00000409312.1	MED20	mediator complex subunit 20
chr17_+_685513	0.89	ENST00000304478.4	RNMTL1	RNA methyltransferase like 1
chr3_-_196669298	0.87	ENST00000411704.1 ENST00000452404.2	NCBP2	nuclear cap binding protein subunit 2, 20kDa
chr14_+_105219437	0.86	ENST00000329967.6 ENST00000347067.5 ENST00000553810.1	SIVA1	SIVA1, apoptosis-inducing factor
chr6_-_31926208	0.86	ENST00000454913.1 ENST00000436289.2	NELFE	negative elongation factor complex member E
chr4_-_170533723	0.85	ENST00000510533.1 ENST00000439128.2 ENST00000511633.1 ENST00000512193.1 ENST00000507142.1	NEK1	NIMA-related kinase 1
chr13_+_103249322	0.85	ENST00000376065.4 ENST00000376052.3	TPP2	tripeptidyl peptidase II
chr16_+_19078960	0.84	ENST00000568985.1 ENST00000566110.1	COQ7	coenzyme Q7 homolog, ubiquinone (yeast)
chr3_-_186288097	0.83	ENST00000446782.1	TBCCD1	TBCC domain containing 1
chr2_+_109335929	0.80	ENST00000283195.6	RANBP2	RAN binding protein 2
chr9_-_32573130	0.80	ENST00000350021.2 ENST00000379847.3	NDUFB6	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 6, 17kDa
chr8_+_101162812	0.78	ENST00000353107.3 ENST00000522439.1	POLR2K	polymerase (RNA) II (DNA directed) polypeptide K, 7.0kDa
chr11_+_18344106	0.78	ENST00000534641.1 ENST00000525831.1 ENST00000265963.4	GTF2H1	general transcription factor IIH, polypeptide 1, 62kDa
chr11_-_62572901	0.78	ENST00000439713.2 ENST00000531131.1 ENST00000530875.1 ENST00000531709.2 ENST00000294172.2	NXF1	nuclear RNA export factor 1
chr17_-_685493	0.77	ENST00000536578.1 ENST00000301328.5 ENST00000576419.1	GLOD4	glyoxalase domain containing 4
chr2_-_29093132	0.77	ENST00000306108.5	TRMT61B	tRNA methyltransferase 61 homolog B (S. cerevisiae)
chr8_+_133787586	0.77	ENST00000395379.1 ENST00000395386.2 ENST00000337920.4	PHF20L1	PHD finger protein 20-like 1
chr16_-_30006922	0.74	ENST00000564026.1	HIRIP3	HIRA interacting protein 3
chr21_-_44527613	0.72	ENST00000380276.2 ENST00000398137.1 ENST00000291552.4	U2AF1	U2 small nuclear RNA auxiliary factor 1
chr15_-_66790047	0.72	ENST00000566658.1 ENST00000563480.2 ENST00000395589.2 ENST00000307979.7	SNAPC5	small nuclear RNA activating complex, polypeptide 5, 19kDa
chr9_+_70856899	0.72	ENST00000377342.5 ENST00000478048.1	CBWD3	COBW domain containing 3
chr16_+_81348528	0.72	ENST00000568107.2	GAN	gigaxonin
chr22_-_19132154	0.71	ENST00000252137.6	DGCR14	DiGeorge syndrome critical region gene 14
chr1_+_213031570	0.70	ENST00000366971.4	FLVCR1	feline leukemia virus subgroup C cellular receptor 1
chr12_+_69633317	0.70	ENST00000435070.2	CPSF6	cleavage and polyadenylation specific factor 6, 68kDa
chr12_+_69633407	0.70	ENST00000551516.1	CPSF6	cleavage and polyadenylation specific factor 6, 68kDa
chr3_+_141457030	0.69	ENST00000273480.3	RNF7	ring finger protein 7
chr1_+_16085244	0.69	ENST00000400773.1	FBLIM1	filamin binding LIM protein 1
chr5_-_132112921	0.68	ENST00000378721.4 ENST00000378701.1	SEPT8	septin 8
chr18_+_268148	0.66	ENST00000581677.1	RP11-705O1.8	RP11-705O1.8
chr2_+_101618965	0.66	ENST00000456292.1 ENST00000409711.1 ENST00000441435.1	RPL31	ribosomal protein L31
chr11_-_66112555	0.66	ENST00000425825.2 ENST00000359957.3	BRMS1	breast cancer metastasis suppressor 1
chr6_+_41755389	0.65	ENST00000398884.3 ENST00000398881.3	TOMM6	translocase of outer mitochondrial membrane 6 homolog (yeast)
chr22_+_41865109	0.64	ENST00000216254.4 ENST00000396512.3	ACO2	aconitase 2, mitochondrial
chr5_-_132112907	0.64	ENST00000458488.2	SEPT8	septin 8
chr16_+_2022036	0.64	ENST00000568546.1	TBL3	transducin (beta)-like 3
chr5_-_74807418	0.63	ENST00000405807.4 ENST00000261415.7	COL4A3BP	collagen, type IV, alpha 3 (Goodpasture antigen) binding protein
chrX_-_153285395	0.63	ENST00000369980.3	IRAK1	interleukin-1 receptor-associated kinase 1
chr9_-_33001520	0.63	ENST00000463596.1 ENST00000379819.1 ENST00000397172.3 ENST00000379812.5 ENST00000477119.1 ENST00000379813.3 ENST00000379825.2 ENST00000309615.3 ENST00000476858.1 ENST00000473221.1	APTX	aprataxin
chr9_-_69262509	0.62	ENST00000377449.1 ENST00000382399.4 ENST00000377439.1 ENST00000377441.1 ENST00000377457.5	CBWD6	COBW domain containing 6
chr19_+_58341656	0.62	ENST00000442832.4 ENST00000594901.1	ZNF587B	zinc finger protein 587B
chr15_-_34394008	0.62	ENST00000527822.1 ENST00000528949.1	EMC7	ER membrane protein complex subunit 7
chr9_-_179018	0.62	ENST00000431099.2 ENST00000382447.4 ENST00000382389.1 ENST00000377447.3 ENST00000314367.10 ENST00000356521.4 ENST00000382393.1 ENST00000377400.4	CBWD1	COBW domain containing 1
chr12_-_120884175	0.61	ENST00000546954.1	TRIAP1	TP53 regulated inhibitor of apoptosis 1
chr15_-_34394119	0.61	ENST00000256545.4	EMC7	ER membrane protein complex subunit 7
chr12_-_124118296	0.60	ENST00000424014.2 ENST00000537073.1	EIF2B1	eukaryotic translation initiation factor 2B, subunit 1 alpha, 26kDa
chr4_-_74124502	0.59	ENST00000358602.4 ENST00000330838.6 ENST00000561029.1	ANKRD17	ankyrin repeat domain 17
chrX_+_135579238	0.58	ENST00000535601.1 ENST00000448450.1 ENST00000425695.1	HTATSF1	HIV-1 Tat specific factor 1
chr11_-_64889529	0.58	ENST00000531743.1 ENST00000527548.1 ENST00000526555.1 ENST00000279259.3	FAU	Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed
chr6_-_41888814	0.57	ENST00000409060.1 ENST00000265350.4	MED20	mediator complex subunit 20
chr6_-_90062543	0.57	ENST00000435041.2	UBE2J1	ubiquitin-conjugating enzyme E2, J1
chr2_+_135676381	0.56	ENST00000537343.1 ENST00000295238.6 ENST00000264157.5	CCNT2	cyclin T2
chr16_-_20753114	0.55	ENST00000396083.2	THUMPD1	THUMP domain containing 1
chr21_+_45079409	0.55	ENST00000340648.4	RRP1B	ribosomal RNA processing 1B
chr3_+_141457105	0.54	ENST00000480908.1 ENST00000393000.3	RNF7	ring finger protein 7
chr12_-_46384334	0.53	ENST00000369367.3 ENST00000266589.6 ENST00000395453.2 ENST00000395454.2	SCAF11	SR-related CTD-associated factor 11
chr15_-_42840961	0.53	ENST00000563454.1 ENST00000397130.3 ENST00000570160.1 ENST00000323443.2	LRRC57	leucine rich repeat containing 57
chr1_-_213031418	0.52	ENST00000356684.3 ENST00000426161.1 ENST00000424044.1	FLVCR1-AS1	FLVCR1 antisense RNA 1 (head to head)
chr16_+_29827285	0.52	ENST00000320330.6	PAGR1	PAXIP1 associated glutamate-rich protein 1
chr14_+_23776024	0.52	ENST00000553781.1 ENST00000556100.1 ENST00000557236.1 ENST00000557579.1	BCL2L2-PABPN1 BCL2L2	BCL2L2-PABPN1 readthrough BCL2-like 2
chr16_+_29827832	0.52	ENST00000609618.1	PAGR1	PAXIP1-associated glutamate-rich protein 1
chr19_-_46234119	0.52	ENST00000317683.3	FBXO46	F-box protein 46
chrX_-_47518527	0.51	ENST00000333119.3	UXT	ubiquitously-expressed, prefoldin-like chaperone
chr7_-_19748640	0.50	ENST00000222567.5	TWISTNB	TWIST neighbor
chr2_-_130939115	0.49	ENST00000441135.1 ENST00000339679.7 ENST00000426662.2 ENST00000443958.2 ENST00000351288.6 ENST00000453750.1 ENST00000452225.2	SMPD4	sphingomyelin phosphodiesterase 4, neutral membrane (neutral sphingomyelinase-3)
chr16_+_1359511	0.49	ENST00000397514.3 ENST00000397515.2 ENST00000567383.1 ENST00000403747.2 ENST00000566587.1	UBE2I	ubiquitin-conjugating enzyme E2I
chr6_-_106773610	0.48	ENST00000369076.3 ENST00000369070.1	ATG5	autophagy related 5
chr9_+_70856397	0.48	ENST00000360171.6	CBWD3	COBW domain containing 3
chr16_+_19078911	0.48	ENST00000321998.5	COQ7	coenzyme Q7 homolog, ubiquinone (yeast)
chrX_-_153285251	0.48	ENST00000444230.1 ENST00000393682.1 ENST00000393687.2 ENST00000429936.2 ENST00000369974.2	IRAK1	interleukin-1 receptor-associated kinase 1
chr1_-_29557383	0.46	ENST00000373791.3 ENST00000263702.6	MECR	mitochondrial trans-2-enoyl-CoA reductase
chr11_+_64889773	0.46	ENST00000534078.1 ENST00000526171.1 ENST00000279242.2 ENST00000531705.1 ENST00000533943.1	MRPL49	mitochondrial ribosomal protein L49
chr17_-_36981556	0.45	ENST00000536127.1 ENST00000225428.5	CWC25	CWC25 spliceosome-associated protein homolog (S. cerevisiae)
chr16_-_2318373	0.44	ENST00000566458.1 ENST00000320225.5	RNPS1	RNA binding protein S1, serine-rich domain
chr15_-_23034322	0.44	ENST00000539711.2 ENST00000560039.1 ENST00000398013.3 ENST00000337451.3 ENST00000359727.4 ENST00000398014.2	NIPA2	non imprinted in Prader-Willi/Angelman syndrome 2
chr3_+_11314099	0.43	ENST00000446450.2 ENST00000354956.5 ENST00000354449.3 ENST00000419112.1	ATG7	autophagy related 7
chr19_+_36120009	0.43	ENST00000589871.1	RBM42	RNA binding motif protein 42
chr17_-_49198095	0.42	ENST00000505279.1	SPAG9	sperm associated antigen 9
chr14_+_23776167	0.42	ENST00000554635.1 ENST00000557008.1	BCL2L2 BCL2L2-PABPN1	BCL2-like 2 BCL2L2-PABPN1 readthrough
chr12_+_69633372	0.41	ENST00000456847.3 ENST00000266679.8	CPSF6	cleavage and polyadenylation specific factor 6, 68kDa
chr17_-_72869086	0.41	ENST00000581530.1 ENST00000420580.2 ENST00000455107.2 ENST00000413947.2 ENST00000581219.1 ENST00000582944.1	FDXR	ferredoxin reductase
chr11_-_10562710	0.41	ENST00000528665.1 ENST00000265981.2	RNF141	ring finger protein 141
chr19_+_36119975	0.41	ENST00000589559.1 ENST00000360475.4	RBM42	RNA binding motif protein 42
chr1_-_36107445	0.40	ENST00000373237.3	PSMB2	proteasome (prosome, macropain) subunit, beta type, 2
chr2_+_114195268	0.39	ENST00000259199.4 ENST00000416503.2 ENST00000433343.2	CBWD2	COBW domain containing 2
chr9_-_70490107	0.39	ENST00000377395.4 ENST00000429800.2 ENST00000430059.2 ENST00000377384.1 ENST00000382405.3	CBWD5	COBW domain containing 5
chr19_-_5720248	0.39	ENST00000360614.3	LONP1	lon peptidase 1, mitochondrial
chr16_+_70380825	0.38	ENST00000417604.2	DDX19A	DEAD (Asp-Glu-Ala-Asp) box polypeptide 19A
chr3_-_52443799	0.38	ENST00000470173.1 ENST00000296288.5	BAP1	BRCA1 associated protein-1 (ubiquitin carboxy-terminal hydrolase)
chr9_+_140083099	0.38	ENST00000322310.5	SSNA1	Sjogren syndrome nuclear autoantigen 1
chr16_-_2318055	0.37	ENST00000561518.1 ENST00000561718.1 ENST00000567147.1 ENST00000562690.1 ENST00000569598.2	RNPS1	RNA binding protein S1, serine-rich domain
chr8_+_145743360	0.37	ENST00000527730.1 ENST00000529022.1 ENST00000292524.1	LRRC14	leucine rich repeat containing 14
chr1_+_186344883	0.36	ENST00000367470.3	C1orf27	chromosome 1 open reading frame 27
chr17_-_8151353	0.36	ENST00000315684.8	CTC1	CTS telomere maintenance complex component 1
chr11_-_64889252	0.36	ENST00000525297.1 ENST00000529259.1	FAU	Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed
chr16_+_68057179	0.36	ENST00000567100.1 ENST00000432752.1 ENST00000569289.1 ENST00000564781.1	DUS2	dihydrouridine synthase 2
chr17_-_73663168	0.35	ENST00000578201.1 ENST00000423245.2	RECQL5	RecQ protein-like 5
chr20_+_55043647	0.35	ENST00000023939.4 ENST00000395881.3 ENST00000357348.5 ENST00000449062.1 ENST00000435342.2	RTFDC1	replication termination factor 2 domain containing 1
chrX_+_84498989	0.35	ENST00000395402.1	ZNF711	zinc finger protein 711
chr1_+_186344945	0.35	ENST00000419367.3 ENST00000287859.6	C1orf27	chromosome 1 open reading frame 27
chr16_+_68056844	0.35	ENST00000565263.1	DUS2	dihydrouridine synthase 2
chr2_+_96068436	0.34	ENST00000445649.1 ENST00000447036.1 ENST00000233379.4 ENST00000418606.1	FAHD2A	fumarylacetoacetate hydrolase domain containing 2A
chr22_+_50946645	0.33	ENST00000420993.2 ENST00000395698.3 ENST00000395701.3 ENST00000523045.1 ENST00000299821.11	NCAPH2	non-SMC condensin II complex, subunit H2
chr17_-_72869140	0.33	ENST00000583917.1 ENST00000293195.5 ENST00000442102.2	FDXR	ferredoxin reductase
chr16_+_68057153	0.32	ENST00000358896.6 ENST00000568099.2	DUS2	dihydrouridine synthase 2
chrX_+_48660287	0.32	ENST00000444343.2 ENST00000376610.2 ENST00000334136.5 ENST00000376619.2	HDAC6	histone deacetylase 6
chr6_-_114292284	0.32	ENST00000520895.1 ENST00000521163.1 ENST00000524334.1 ENST00000368632.2 ENST00000398283.2	HDAC2	histone deacetylase 2
chr2_-_110962544	0.32	ENST00000355301.4 ENST00000445609.2 ENST00000417665.1 ENST00000418527.1 ENST00000316534.4 ENST00000393272.3	NPHP1	nephronophthisis 1 (juvenile)
chr11_+_66610883	0.32	ENST00000309657.3 ENST00000524506.1	RCE1	Ras converting CAAX endopeptidase 1
chr8_-_133493200	0.32	ENST00000388996.4	KCNQ3	potassium voltage-gated channel, KQT-like subfamily, member 3
chr11_+_60609537	0.31	ENST00000227520.5	CCDC86	coiled-coil domain containing 86

Gene overrepresentation in C2:CP:REACTOME category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.4	3.6	REACTOME MRNA DECAY BY 3 TO 5 EXORIBONUCLEASE	Genes involved in mRNA Decay by 3' to 5' Exoribonuclease
0.2	8.9	REACTOME TRANSPORT OF MATURE MRNA DERIVED FROM AN INTRONLESS TRANSCRIPT	Genes involved in Transport of Mature mRNA Derived from an Intronless Transcript
0.2	2.4	REACTOME ACTIVATION OF CHAPERONE GENES BY ATF6 ALPHA	Genes involved in Activation of Chaperone Genes by ATF6-alpha
0.2	2.4	REACTOME MRNA DECAY BY 5 TO 3 EXORIBONUCLEASE	Genes involved in mRNA Decay by 5' to 3' Exoribonuclease
0.1	4.1	REACTOME TRANSPORT OF MATURE TRANSCRIPT TO CYTOPLASM	Genes involved in Transport of Mature Transcript to Cytoplasm
0.1	2.0	REACTOME PURINE RIBONUCLEOSIDE MONOPHOSPHATE BIOSYNTHESIS	Genes involved in Purine ribonucleoside monophosphate biosynthesis
0.1	1.2	REACTOME CDC6 ASSOCIATION WITH THE ORC ORIGIN COMPLEX	Genes involved in CDC6 association with the ORC:origin complex
0.1	2.6	REACTOME CONVERSION FROM APC C CDC20 TO APC C CDH1 IN LATE ANAPHASE	Genes involved in Conversion from APC/C:Cdc20 to APC/C:Cdh1 in late anaphase
0.1	1.1	REACTOME IRAK1 RECRUITS IKK COMPLEX	Genes involved in IRAK1 recruits IKK complex
0.1	1.3	REACTOME POL SWITCHING	Genes involved in Polymerase switching
0.1	4.2	REACTOME RNA POL II TRANSCRIPTION PRE INITIATION AND PROMOTER OPENING	Genes involved in RNA Polymerase II Transcription Pre-Initiation And Promoter Opening
0.1	3.1	REACTOME RNA POL III TRANSCRIPTION INITIATION FROM TYPE 3 PROMOTER	Genes involved in RNA Polymerase III Transcription Initiation From Type 3 Promoter
0.1	1.0	REACTOME RAF MAP KINASE CASCADE	Genes involved in RAF/MAP kinase cascade
0.1	2.2	REACTOME CYTOSOLIC TRNA AMINOACYLATION	Genes involved in Cytosolic tRNA aminoacylation
0.1	1.4	REACTOME MRNA SPLICING MINOR PATHWAY	Genes involved in mRNA Splicing - Minor Pathway
0.0	2.0	REACTOME LATE PHASE OF HIV LIFE CYCLE	Genes involved in Late Phase of HIV Life Cycle
0.0	1.8	REACTOME SIGNALING BY FGFR1 FUSION MUTANTS	Genes involved in Signaling by FGFR1 fusion mutants
0.0	0.9	REACTOME CITRIC ACID CYCLE TCA CYCLE	Genes involved in Citric acid cycle (TCA cycle)
0.0	0.2	REACTOME RNA POL III TRANSCRIPTION INITIATION FROM TYPE 2 PROMOTER	Genes involved in RNA Polymerase III Transcription Initiation From Type 2 Promoter
0.0	1.0	REACTOME SYNTHESIS AND INTERCONVERSION OF NUCLEOTIDE DI AND TRIPHOSPHATES	Genes involved in Synthesis and interconversion of nucleotide di- and triphosphates
0.0	1.0	REACTOME DEADENYLATION DEPENDENT MRNA DECAY	Genes involved in Deadenylation-dependent mRNA decay
0.0	2.2	REACTOME FORMATION OF THE TERNARY COMPLEX AND SUBSEQUENTLY THE 43S COMPLEX	Genes involved in Formation of the ternary complex, and subsequently, the 43S complex
0.0	2.7	REACTOME TRANSCRIPTIONAL REGULATION OF WHITE ADIPOCYTE DIFFERENTIATION	Genes involved in Transcriptional Regulation of White Adipocyte Differentiation
0.0	0.7	REACTOME CELL EXTRACELLULAR MATRIX INTERACTIONS	Genes involved in Cell-extracellular matrix interactions
0.0	0.9	REACTOME PIP3 ACTIVATES AKT SIGNALING	Genes involved in PIP3 activates AKT signaling
0.0	0.8	REACTOME IRON UPTAKE AND TRANSPORT	Genes involved in Iron uptake and transport
0.0	1.1	REACTOME ACTIVATION OF CHAPERONE GENES BY XBP1S	Genes involved in Activation of Chaperone Genes by XBP1(S)
0.0	0.3	REACTOME RETROGRADE NEUROTROPHIN SIGNALLING	Genes involved in Retrograde neurotrophin signalling
0.0	0.6	REACTOME NOTCH1 INTRACELLULAR DOMAIN REGULATES TRANSCRIPTION	Genes involved in NOTCH1 Intracellular Domain Regulates Transcription
0.0	1.1	REACTOME RESPIRATORY ELECTRON TRANSPORT	Genes involved in Respiratory electron transport
0.0	0.7	REACTOME NEGATIVE REGULATORS OF RIG I MDA5 SIGNALING	Genes involved in Negative regulators of RIG-I/MDA5 signaling
0.0	0.9	REACTOME GOLGI ASSOCIATED VESICLE BIOGENESIS	Genes involved in Golgi Associated Vesicle Biogenesis
0.0	0.5	REACTOME GLYCOSPHINGOLIPID METABOLISM	Genes involved in Glycosphingolipid metabolism

Gene overrepresentation in molecular_function category:

Log-likelihood per target	Total log-likelihood	Term	Description
2.1	6.3	GO:0070283	lipoate synthase activity(GO:0016992) radical SAM enzyme activity(GO:0070283)
1.2	4.7	GO:0070137	ubiquitin-like protein-specific endopeptidase activity(GO:0070137) SUMO-specific endopeptidase activity(GO:0070139)
0.6	1.7	GO:0070361	mitochondrial light strand promoter anti-sense binding(GO:0070361) mitochondrial heavy strand promoter anti-sense binding(GO:0070362) mitochondrial heavy strand promoter sense binding(GO:0070364)
0.4	1.3	GO:0016454	serine C-palmitoyltransferase activity(GO:0004758) C-palmitoyltransferase activity(GO:0016454)
0.4	4.9	GO:0005049	nuclear export signal receptor activity(GO:0005049)
0.4	3.4	GO:0008474	palmitoyl-(protein) hydrolase activity(GO:0008474) palmitoyl hydrolase activity(GO:0098599)
0.3	0.9	GO:0004711	ribosomal protein S6 kinase activity(GO:0004711)
0.3	0.9	GO:0016426	tRNA (adenine) methyltransferase activity(GO:0016426) tRNA (adenine-N1-)-methyltransferase activity(GO:0016429)
0.3	1.4	GO:0008420	CTD phosphatase activity(GO:0008420)
0.2	1.2	GO:0008174	mRNA methyltransferase activity(GO:0008174)
0.2	0.7	GO:0004324	ferredoxin-NADP+ reductase activity(GO:0004324) NADPH-adrenodoxin reductase activity(GO:0015039) oxidoreductase activity, acting on iron-sulfur proteins as donors(GO:0016730) oxidoreductase activity, acting on iron-sulfur proteins as donors, NAD or NADP as acceptor(GO:0016731)
0.2	3.3	GO:0016884	carbon-nitrogen ligase activity, with glutamine as amido-N-donor(GO:0016884)
0.2	1.3	GO:0009378	four-way junction helicase activity(GO:0009378)
0.2	0.6	GO:0051538	3 iron, 4 sulfur cluster binding(GO:0051538)
0.2	2.4	GO:0017070	U6 snRNA binding(GO:0017070)
0.2	0.9	GO:0010465	nerve growth factor receptor activity(GO:0010465)
0.2	2.1	GO:0016423	tRNA (guanine) methyltransferase activity(GO:0016423)
0.2	1.0	GO:0017150	tRNA dihydrouridine synthase activity(GO:0017150)
0.2	1.2	GO:0030621	U4 snRNA binding(GO:0030621)
0.2	1.0	GO:0050145	nucleoside phosphate kinase activity(GO:0050145)
0.2	0.6	GO:0097001	ceramide binding(GO:0097001)
0.2	1.1	GO:0004704	NF-kappaB-inducing kinase activity(GO:0004704)
0.2	0.5	GO:0019166	trans-2-enoyl-CoA reductase (NADPH) activity(GO:0019166)
0.2	1.2	GO:0019788	NEDD8 transferase activity(GO:0019788)
0.2	1.2	GO:0000340	RNA 7-methylguanosine cap binding(GO:0000340)
0.1	0.4	GO:0034353	RNA pyrophosphohydrolase activity(GO:0034353)
0.1	0.7	GO:0030628	pre-mRNA 3'-splice site binding(GO:0030628)
0.1	0.8	GO:0008240	tripeptidyl-peptidase activity(GO:0008240)
0.1	2.0	GO:0042809	vitamin D receptor binding(GO:0042809)
0.1	4.5	GO:0000175	3'-5'-exoribonuclease activity(GO:0000175)
0.1	2.2	GO:0035613	RNA stem-loop binding(GO:0035613)
0.1	5.6	GO:0005164	tumor necrosis factor receptor binding(GO:0005164)
0.1	0.7	GO:0019776	Atg8 ligase activity(GO:0019776)
0.1	0.6	GO:0097322	7SK snRNA binding(GO:0097322)
0.1	1.3	GO:0019706	protein-cysteine S-palmitoyltransferase activity(GO:0019706) protein-cysteine S-acyltransferase activity(GO:0019707)
0.1	2.0	GO:0008353	RNA polymerase II carboxy-terminal domain kinase activity(GO:0008353)
0.1	0.3	GO:0042903	tubulin deacetylase activity(GO:0042903)
0.1	0.6	GO:0035312	5'-3' exodeoxyribonuclease activity(GO:0035312)
0.1	5.2	GO:0004004	ATP-dependent RNA helicase activity(GO:0004004)
0.1	1.3	GO:0008408	3'-5' exonuclease activity(GO:0008408)
0.1	2.0	GO:0005487	nucleocytoplasmic transporter activity(GO:0005487)
0.1	0.3	GO:0043398	HLH domain binding(GO:0043398)
0.1	0.4	GO:0004839	ubiquitin activating enzyme activity(GO:0004839)
0.1	1.3	GO:0001054	RNA polymerase I activity(GO:0001054)
0.1	0.7	GO:0015232	heme transporter activity(GO:0015232)
0.1	2.1	GO:0008308	voltage-gated anion channel activity(GO:0008308)
0.1	0.2	GO:0032093	SAM domain binding(GO:0032093)
0.1	1.5	GO:0005092	GDP-dissociation inhibitor activity(GO:0005092)
0.1	0.7	GO:0005078	MAP-kinase scaffold activity(GO:0005078)
0.1	0.2	GO:0004523	RNA-DNA hybrid ribonuclease activity(GO:0004523)
0.1	0.8	GO:0019789	SUMO transferase activity(GO:0019789)
0.0	1.3	GO:0008173	RNA methyltransferase activity(GO:0008173)
0.0	0.5	GO:0004767	sphingomyelin phosphodiesterase activity(GO:0004767)
0.0	0.2	GO:0004591	oxoglutarate dehydrogenase (succinyl-transferring) activity(GO:0004591)
0.0	1.5	GO:0003899	DNA-directed RNA polymerase activity(GO:0003899)
0.0	0.2	GO:0016802	adenosylhomocysteinase activity(GO:0004013) trialkylsulfonium hydrolase activity(GO:0016802)
0.0	1.1	GO:0016922	ligand-dependent nuclear receptor binding(GO:0016922)
0.0	0.4	GO:0015095	magnesium ion transmembrane transporter activity(GO:0015095)
0.0	1.4	GO:0000049	tRNA binding(GO:0000049)
0.0	0.4	GO:0043047	single-stranded telomeric DNA binding(GO:0043047) G-rich strand telomeric DNA binding(GO:0098505)
0.0	0.7	GO:0031005	filamin binding(GO:0031005)
0.0	0.3	GO:0031078	histone deacetylase activity (H3-K14 specific)(GO:0031078) NAD-dependent histone deacetylase activity (H3-K14 specific)(GO:0032041)
0.0	2.6	GO:0015171	amino acid transmembrane transporter activity(GO:0015171)
0.0	0.8	GO:0001106	RNA polymerase II transcription corepressor activity(GO:0001106)
0.0	2.4	GO:0070491	repressing transcription factor binding(GO:0070491)
0.0	0.9	GO:0071889	14-3-3 protein binding(GO:0071889)
0.0	0.6	GO:0030515	snoRNA binding(GO:0030515)
0.0	0.1	GO:0030366	molybdopterin synthase activity(GO:0030366)
0.0	0.7	GO:0004407	histone deacetylase activity(GO:0004407)
0.0	5.1	GO:0003735	structural constituent of ribosome(GO:0003735)
0.0	1.6	GO:0003743	translation initiation factor activity(GO:0003743)
0.0	0.1	GO:0008823	cupric reductase activity(GO:0008823) ferric-chelate reductase (NADPH) activity(GO:0052851)
0.0	1.8	GO:0002039	p53 binding(GO:0002039)
0.0	1.1	GO:0008137	NADH dehydrogenase (ubiquinone) activity(GO:0008137) NADH dehydrogenase (quinone) activity(GO:0050136)
0.0	2.1	GO:0004497	monooxygenase activity(GO:0004497)
0.0	4.2	GO:0061659	ubiquitin protein ligase activity(GO:0061630) ubiquitin-like protein ligase activity(GO:0061659)
0.0	0.3	GO:0098748	clathrin adaptor activity(GO:0035615) endocytic adaptor activity(GO:0098748)
0.0	3.4	GO:0004842	ubiquitin-protein transferase activity(GO:0004842)
0.0	0.8	GO:0030331	estrogen receptor binding(GO:0030331)
0.0	0.1	GO:0030911	TPR domain binding(GO:0030911)
0.0	1.1	GO:0003725	double-stranded RNA binding(GO:0003725)
0.0	2.1	GO:0017137	Rab GTPase binding(GO:0017137)
0.0	5.3	GO:0005525	GTP binding(GO:0005525)

Gene overrepresentation in cellular_component category:

Log-likelihood per target	Total log-likelihood	Term	Description
1.1	3.4	GO:0030689	Noc complex(GO:0030689)
0.7	2.2	GO:1990876	cytoplasmic side of nuclear pore(GO:1990876)
0.6	3.0	GO:0043527	tRNA methyltransferase complex(GO:0043527)
0.4	4.7	GO:0000176	nuclear exosome (RNase complex)(GO:0000176)
0.4	1.2	GO:0043224	nuclear SCF ubiquitin ligase complex(GO:0043224)
0.4	2.7	GO:0000445	THO complex(GO:0000347) THO complex part of transcription export complex(GO:0000445)
0.3	1.3	GO:0031211	serine C-palmitoyltransferase complex(GO:0017059) endoplasmic reticulum palmitoyltransferase complex(GO:0031211)
0.3	2.4	GO:1990726	Lsm1-7-Pat1 complex(GO:1990726)
0.3	1.0	GO:0005850	eukaryotic translation initiation factor 2 complex(GO:0005850)
0.3	2.2	GO:0097452	GAIT complex(GO:0097452)
0.3	1.2	GO:0005846	nuclear cap binding complex(GO:0005846)
0.2	1.0	GO:0044094	host cell nucleus(GO:0042025) host cell nuclear part(GO:0044094)
0.2	1.8	GO:0042382	paraspeckles(GO:0042382)
0.2	1.1	GO:0045323	interleukin-1 receptor complex(GO:0045323)
0.2	2.2	GO:0000439	core TFIIH complex(GO:0000439)
0.2	1.3	GO:0005658	alpha DNA polymerase:primase complex(GO:0005658)
0.2	2.4	GO:0016602	CCAAT-binding factor complex(GO:0016602)
0.2	6.8	GO:0000315	organellar large ribosomal subunit(GO:0000315) mitochondrial large ribosomal subunit(GO:0005762)
0.2	0.8	GO:0032021	NELF complex(GO:0032021)
0.1	0.7	GO:0089701	U2AF(GO:0089701)
0.1	1.2	GO:0072546	ER membrane protein complex(GO:0072546)
0.1	1.2	GO:0070652	HAUS complex(GO:0070652)
0.1	0.8	GO:0044614	nuclear pore cytoplasmic filaments(GO:0044614)
0.1	0.6	GO:0034388	Pwp2p-containing subcomplex of 90S preribosome(GO:0034388)
0.1	1.2	GO:0000177	cytoplasmic exosome (RNase complex)(GO:0000177)
0.1	3.2	GO:0035145	exon-exon junction complex(GO:0035145)
0.1	1.4	GO:0000940	condensed chromosome outer kinetochore(GO:0000940)
0.1	1.3	GO:0043190	ATP-binding cassette (ABC) transporter complex(GO:0043190)
0.1	0.8	GO:0000346	transcription export complex(GO:0000346)
0.1	0.7	GO:0034274	Atg12-Atg5-Atg16 complex(GO:0034274)
0.1	2.6	GO:0071011	precatalytic spliceosome(GO:0071011)
0.1	1.0	GO:0044666	MLL3/4 complex(GO:0044666)
0.1	0.6	GO:0005742	mitochondrial outer membrane translocase complex(GO:0005742)
0.1	0.5	GO:0030688	preribosome, small subunit precursor(GO:0030688)
0.1	2.6	GO:0005680	anaphase-promoting complex(GO:0005680)
0.1	1.4	GO:0030686	90S preribosome(GO:0030686)
0.1	1.7	GO:0031306	intrinsic component of mitochondrial outer membrane(GO:0031306)
0.1	0.6	GO:0005851	eukaryotic translation initiation factor 2B complex(GO:0005851)
0.1	5.3	GO:0031463	Cul3-RING ubiquitin ligase complex(GO:0031463)
0.1	2.7	GO:0016592	mediator complex(GO:0016592)
0.1	8.3	GO:0005643	nuclear pore(GO:0005643)
0.1	2.0	GO:0030687	preribosome, large subunit precursor(GO:0030687)
0.1	1.3	GO:0005736	DNA-directed RNA polymerase I complex(GO:0005736)
0.1	6.3	GO:0005758	mitochondrial intermembrane space(GO:0005758)
0.1	0.6	GO:0008024	cyclin/CDK positive transcription elongation factor complex(GO:0008024)
0.0	0.8	GO:0031616	spindle pole centrosome(GO:0031616)
0.0	2.0	GO:0005669	transcription factor TFIID complex(GO:0005669)
0.0	0.6	GO:0005686	U2 snRNP(GO:0005686)
0.0	1.0	GO:0070822	Sin3-type complex(GO:0070822)
0.0	0.9	GO:0000242	pericentriolar material(GO:0000242)
0.0	0.2	GO:0045252	oxoglutarate dehydrogenase complex(GO:0045252)
0.0	1.7	GO:0009295	nucleoid(GO:0009295) mitochondrial nucleoid(GO:0042645)
0.0	1.1	GO:0000407	pre-autophagosomal structure(GO:0000407)
0.0	0.2	GO:0000127	transcription factor TFIIIC complex(GO:0000127)
0.0	2.8	GO:0032580	Golgi cisterna membrane(GO:0032580)
0.0	0.3	GO:0070776	H3 histone acetyltransferase complex(GO:0070775) MOZ/MORF histone acetyltransferase complex(GO:0070776)
0.0	2.0	GO:0030670	phagocytic vesicle membrane(GO:0030670)
0.0	0.4	GO:0019774	proteasome core complex, beta-subunit complex(GO:0019774)
0.0	0.3	GO:0005847	mRNA cleavage and polyadenylation specificity factor complex(GO:0005847)
0.0	3.4	GO:0043202	lysosomal lumen(GO:0043202)
0.0	0.1	GO:0031085	BLOC-3 complex(GO:0031085)
0.0	0.1	GO:0008537	proteasome activator complex(GO:0008537)
0.0	0.4	GO:0000782	telomere cap complex(GO:0000782) nuclear telomere cap complex(GO:0000783)
0.0	8.0	GO:0005759	mitochondrial matrix(GO:0005759)
0.0	0.3	GO:0043194	axon initial segment(GO:0043194)
0.0	0.3	GO:0036020	endolysosome membrane(GO:0036020)
0.0	0.8	GO:0045271	mitochondrial respiratory chain complex I(GO:0005747) NADH dehydrogenase complex(GO:0030964) respiratory chain complex I(GO:0045271)
0.0	1.4	GO:0090575	RNA polymerase II transcription factor complex(GO:0090575)
0.0	0.3	GO:0000795	synaptonemal complex(GO:0000795)
0.0	1.0	GO:0070821	tertiary granule membrane(GO:0070821)

Gene overrepresentation in C2:CP category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.1	3.9	PID SMAD2 3PATHWAY	Regulation of cytoplasmic and nuclear SMAD2/3 signaling
0.1	3.7	ST WNT BETA CATENIN PATHWAY	Wnt/beta-catenin Pathway
0.1	0.8	PID RANBP2 PATHWAY	Sumoylation by RanBP2 regulates transcriptional repression
0.1	0.9	SA G2 AND M PHASES	Cdc25 activates the cdc2/cyclin B complex to induce the G2/M transition.
0.1	1.0	PID TCR RAS PATHWAY	Ras signaling in the CD4+ TCR pathway
0.0	1.0	PID WNT CANONICAL PATHWAY	Canonical Wnt signaling pathway
0.0	1.1	PID TOLL ENDOGENOUS PATHWAY	Endogenous TLR signaling
0.0	5.9	PID P53 DOWNSTREAM PATHWAY	Direct p53 effectors
0.0	0.6	PID DNA PK PATHWAY	DNA-PK pathway in nonhomologous end joining

Gene overrepresentation in biological_process category:

Log-likelihood per target	Total log-likelihood	Term	Description
2.1	6.3	GO:0009107	lipoate biosynthetic process(GO:0009107)
1.2	4.7	GO:0009386	translational attenuation(GO:0009386)
0.9	3.6	GO:0034476	U1 snRNA 3'-end processing(GO:0034473) U5 snRNA 3'-end processing(GO:0034476)
0.7	2.7	GO:0045829	negative regulation of isotype switching(GO:0045829)
0.6	4.7	GO:0016926	protein desumoylation(GO:0016926)
0.6	1.7	GO:0070407	oxidation-dependent protein catabolic process(GO:0070407)
0.5	1.4	GO:0002101	tRNA wobble cytosine modification(GO:0002101)
0.4	1.3	GO:0006269	DNA replication, synthesis of RNA primer(GO:0006269)
0.4	0.4	GO:1902534	single-organism membrane invagination(GO:1902534)
0.4	3.4	GO:0098734	macromolecule depalmitoylation(GO:0098734)
0.4	1.2	GO:0000965	mitochondrial RNA 3'-end processing(GO:0000965)
0.3	1.4	GO:0031081	nuclear pore distribution(GO:0031081) nuclear pore localization(GO:0051664)
0.3	1.3	GO:1904502	regulation of lipophagy(GO:1904502) positive regulation of lipophagy(GO:1904504)
0.3	1.2	GO:0046833	snRNA export from nucleus(GO:0006408) positive regulation of RNA export from nucleus(GO:0046833)
0.3	2.1	GO:0070164	negative regulation of adiponectin secretion(GO:0070164)
0.3	2.1	GO:0046604	positive regulation of mitotic centrosome separation(GO:0046604)
0.3	2.3	GO:0006384	transcription initiation from RNA polymerase III promoter(GO:0006384)
0.3	0.8	GO:0051684	maintenance of Golgi location(GO:0051684)
0.3	0.8	GO:0070901	mitochondrial tRNA methylation(GO:0070901)
0.2	1.0	GO:0009189	dTTP biosynthetic process(GO:0006235) deoxyribonucleoside diphosphate biosynthetic process(GO:0009189) pyrimidine deoxyribonucleoside triphosphate biosynthetic process(GO:0009212)
0.2	1.2	GO:0080009	mRNA methylation(GO:0080009)
0.2	0.7	GO:0039689	negative stranded viral RNA replication(GO:0039689) multi-organism biosynthetic process(GO:0044034)
0.2	0.6	GO:0035621	ER to Golgi ceramide transport(GO:0035621)
0.2	2.0	GO:0006189	'de novo' IMP biosynthetic process(GO:0006189)
0.2	1.2	GO:0048254	snoRNA localization(GO:0048254)
0.2	2.1	GO:0061734	parkin-mediated mitophagy in response to mitochondrial depolarization(GO:0061734)
0.2	3.3	GO:0006744	ubiquinone biosynthetic process(GO:0006744) quinone biosynthetic process(GO:1901663)
0.2	1.0	GO:0002943	tRNA dihydrouridine synthesis(GO:0002943)
0.1	0.6	GO:1900245	positive regulation of MDA-5 signaling pathway(GO:1900245)
0.1	5.6	GO:0000462	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)(GO:0000462)
0.1	0.6	GO:0019086	late viral transcription(GO:0019086)
0.1	1.0	GO:0000290	deadenylation-dependent decapping of nuclear-transcribed mRNA(GO:0000290)
0.1	0.6	GO:0035900	response to isolation stress(GO:0035900)
0.1	0.4	GO:0035521	monoubiquitinated histone deubiquitination(GO:0035521) monoubiquitinated histone H2A deubiquitination(GO:0035522)
0.1	1.2	GO:0070345	negative regulation of fat cell proliferation(GO:0070345)
0.1	0.4	GO:0033140	negative regulation of peptidyl-serine phosphorylation of STAT protein(GO:0033140)
0.1	1.2	GO:0000733	DNA strand renaturation(GO:0000733)
0.1	4.7	GO:0071431	tRNA export from nucleus(GO:0006409) tRNA-containing ribonucleoprotein complex export from nucleus(GO:0071431)
0.1	0.3	GO:1903348	positive regulation of bicellular tight junction assembly(GO:1903348)
0.1	2.0	GO:0043923	positive regulation by host of viral transcription(GO:0043923)
0.1	0.7	GO:0090074	negative regulation of protein homodimerization activity(GO:0090074)
0.1	2.0	GO:0070816	phosphorylation of RNA polymerase II C-terminal domain(GO:0070816)
0.1	1.4	GO:0001510	RNA methylation(GO:0001510)
0.1	0.4	GO:0060830	ciliary receptor clustering involved in smoothened signaling pathway(GO:0060830)
0.1	6.8	GO:0070126	mitochondrial translational elongation(GO:0070125) mitochondrial translational termination(GO:0070126)
0.1	0.9	GO:0051005	negative regulation of lipoprotein lipase activity(GO:0051005)
0.1	0.4	GO:0048539	bone marrow development(GO:0048539)
0.1	4.8	GO:0010501	RNA secondary structure unwinding(GO:0010501)
0.1	0.8	GO:0016973	poly(A)+ mRNA export from nucleus(GO:0016973)
0.1	0.6	GO:0070862	negative regulation of protein exit from endoplasmic reticulum(GO:0070862) negative regulation of retrograde protein transport, ER to cytosol(GO:1904153)
0.1	1.3	GO:0018345	protein palmitoylation(GO:0018345)
0.1	0.2	GO:0061034	olfactory bulb mitral cell layer development(GO:0061034)
0.1	1.2	GO:0045116	protein neddylation(GO:0045116)
0.1	1.0	GO:0033148	positive regulation of intracellular estrogen receptor signaling pathway(GO:0033148)
0.1	0.2	GO:1901491	negative regulation of lymphangiogenesis(GO:1901491)
0.1	0.2	GO:0009304	tRNA transcription(GO:0009304) 5S class rRNA transcription from RNA polymerase III type 1 promoter(GO:0042791) tRNA transcription from RNA polymerase III promoter(GO:0042797)
0.1	0.3	GO:0010793	regulation of mRNA export from nucleus(GO:0010793)
0.1	0.6	GO:0000012	single strand break repair(GO:0000012)
0.1	0.6	GO:2001138	regulation of phospholipid transport(GO:2001138) positive regulation of phospholipid transport(GO:2001140)
0.1	0.3	GO:0099590	neurotransmitter receptor internalization(GO:0099590)
0.1	0.8	GO:1900364	negative regulation of mRNA polyadenylation(GO:1900364)
0.1	1.7	GO:0043928	exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay(GO:0043928)
0.1	0.3	GO:0061198	fungiform papilla formation(GO:0061198)
0.1	0.3	GO:0043983	histone H4-K12 acetylation(GO:0043983)
0.1	0.7	GO:0015886	heme transport(GO:0015886)
0.1	0.7	GO:2000210	positive regulation of anoikis(GO:2000210)
0.1	2.0	GO:0048025	negative regulation of mRNA splicing, via spliceosome(GO:0048025)
0.1	1.4	GO:0032543	mitochondrial translation(GO:0032543)
0.1	2.6	GO:0070979	protein K11-linked ubiquitination(GO:0070979)
0.1	0.4	GO:0071027	nuclear RNA surveillance(GO:0071027) nuclear mRNA surveillance(GO:0071028)
0.1	1.1	GO:0000460	maturation of 5.8S rRNA(GO:0000460)
0.1	1.1	GO:0034134	toll-like receptor 2 signaling pathway(GO:0034134)
0.1	0.4	GO:0015693	magnesium ion transport(GO:0015693)
0.1	0.5	GO:0006685	sphingomyelin catabolic process(GO:0006685)
0.1	5.2	GO:0031124	mRNA 3'-end processing(GO:0031124)
0.1	2.6	GO:0006400	tRNA modification(GO:0006400)
0.1	0.2	GO:0043137	DNA replication, removal of RNA primer(GO:0043137)
0.0	0.7	GO:0033623	regulation of integrin activation(GO:0033623)
0.0	2.2	GO:0043039	tRNA aminoacylation for protein translation(GO:0006418) amino acid activation(GO:0043038) tRNA aminoacylation(GO:0043039)
0.0	0.1	GO:0051461	positive regulation of corticotropin secretion(GO:0051461)
0.0	2.1	GO:1903959	regulation of anion transmembrane transport(GO:1903959)
0.0	0.2	GO:0048698	negative regulation of collateral sprouting in absence of injury(GO:0048698)
0.0	0.2	GO:1902953	positive regulation of ER to Golgi vesicle-mediated transport(GO:1902953)
0.0	0.6	GO:0014029	neural crest formation(GO:0014029)
0.0	0.8	GO:0047497	establishment of mitochondrion localization, microtubule-mediated(GO:0034643) mitochondrion transport along microtubule(GO:0047497)
0.0	2.6	GO:0003333	amino acid transmembrane transport(GO:0003333)
0.0	0.9	GO:0042769	DNA damage response, detection of DNA damage(GO:0042769)
0.0	2.3	GO:0045540	regulation of cholesterol biosynthetic process(GO:0045540)
0.0	0.3	GO:1902969	mitotic DNA replication(GO:1902969)
0.0	1.0	GO:0070987	error-free translesion synthesis(GO:0070987)
0.0	2.1	GO:0042273	ribosomal large subunit biogenesis(GO:0042273)
0.0	1.3	GO:0006363	termination of RNA polymerase I transcription(GO:0006363)
0.0	0.9	GO:0045948	positive regulation of translational initiation(GO:0045948)
0.0	0.1	GO:1990414	replication-born double-strand break repair via sister chromatid exchange(GO:1990414)
0.0	0.1	GO:0048075	positive regulation of eye pigmentation(GO:0048075)
0.0	0.1	GO:0007231	osmosensory signaling pathway(GO:0007231)
0.0	0.1	GO:2000767	positive regulation of cytoplasmic translation(GO:2000767)
0.0	0.3	GO:0033235	positive regulation of protein sumoylation(GO:0033235)
0.0	0.1	GO:0045347	negative regulation of MHC class II biosynthetic process(GO:0045347)
0.0	0.3	GO:0060081	membrane hyperpolarization(GO:0060081)
0.0	0.2	GO:0070314	G1 to G0 transition(GO:0070314)
0.0	0.1	GO:0097461	ferric iron import into cell(GO:0097461) ferric iron import across plasma membrane(GO:0098706)
0.0	1.1	GO:0006120	mitochondrial electron transport, NADH to ubiquinone(GO:0006120)
0.0	0.4	GO:0072600	establishment of protein localization to Golgi(GO:0072600)
0.0	0.7	GO:0006333	chromatin assembly or disassembly(GO:0006333)
0.0	0.2	GO:0035269	protein O-linked mannosylation(GO:0035269)
0.0	1.4	GO:0036498	IRE1-mediated unfolded protein response(GO:0036498)
0.0	0.2	GO:2001241	positive regulation of extrinsic apoptotic signaling pathway in absence of ligand(GO:2001241)
0.0	0.3	GO:0032784	regulation of DNA-templated transcription, elongation(GO:0032784)
0.0	0.9	GO:0045454	cell redox homeostasis(GO:0045454)
0.0	0.6	GO:0014003	oligodendrocyte development(GO:0014003)
0.0	1.2	GO:0051225	spindle assembly(GO:0051225)
0.0	0.3	GO:0030261	chromosome condensation(GO:0030261)