ENCODE cell lines, expression (Ernst 2011)

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Download the whole report

Gene Symbol	Gene ID	Gene Info
HOXD9 Links Ensembl NCBI GeneCards UniProt	ENSG00000128709.10	HOXD9

Gene	Promoter	Pearson corr. coef.	P-value	Plot
HOXD9	hg19_v2_chr2_+_176987088_176987088	0.32	2.3e-01	Click!

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Promoter	Score	Transcript	Gene	Gene Info
chrX_+_49294472	2.97	ENST00000361446.5	GAGE12B	G antigen 12B
chr6_+_6588316	2.82	ENST00000379953.2	LY86	lymphocyte antigen 86
chr2_+_143635067	2.72	ENST00000264170.4	KYNU	kynureninase
chr2_+_143886877	2.33	ENST00000295095.6	ARHGAP15	Rho GTPase activating protein 15
chr6_+_13272904	2.25	ENST00000379335.3 ENST00000379329.1	PHACTR1	phosphatase and actin regulator 1
chr12_-_15104040	2.24	ENST00000541644.1 ENST00000545895.1	ARHGDIB	Rho GDP dissociation inhibitor (GDI) beta
chr2_-_158345462	2.15	ENST00000439355.1 ENST00000540637.1	CYTIP	cytohesin 1 interacting protein
chr1_+_198608146	2.06	ENST00000367376.2 ENST00000352140.3 ENST00000594404.1 ENST00000598951.1 ENST00000530727.1 ENST00000442510.2 ENST00000367367.4 ENST00000348564.6 ENST00000367364.1 ENST00000413409.2	PTPRC	protein tyrosine phosphatase, receptor type, C
chr19_+_10397648	2.01	ENST00000340992.4 ENST00000393717.2	ICAM4	intercellular adhesion molecule 4 (Landsteiner-Wiener blood group)
chrX_-_52258669	1.80	ENST00000441417.1	XAGE1A	X antigen family, member 1A
chr11_-_5255861	1.77	ENST00000380299.3	HBD	hemoglobin, delta
chr13_-_99959641	1.67	ENST00000376414.4	GPR183	G protein-coupled receptor 183
chr2_+_33661382	1.64	ENST00000402538.3	RASGRP3	RAS guanyl releasing protein 3 (calcium and DAG-regulated)
chr12_-_8765446	1.53	ENST00000537228.1 ENST00000229335.6	AICDA	activation-induced cytidine deaminase
chrX_+_52513455	1.52	ENST00000446098.1	XAGE1C	X antigen family, member 1C
chr13_-_47012325	1.44	ENST00000409879.2	KIAA0226L	KIAA0226-like
chr11_-_104972158	1.41	ENST00000598974.1 ENST00000593315.1 ENST00000594519.1 ENST00000415981.2 ENST00000525374.1 ENST00000375707.1	CASP1 CARD16 CARD17	caspase 1, apoptosis-related cysteine peptidase caspase recruitment domain family, member 16 caspase recruitment domain family, member 17
chr15_-_55562582	1.31	ENST00000396307.2	RAB27A	RAB27A, member RAS oncogene family
chr6_-_32634425	1.27	ENST00000399082.3 ENST00000399079.3 ENST00000374943.4 ENST00000434651.2	HLA-DQB1	major histocompatibility complex, class II, DQ beta 1
chr2_-_170430277	1.27	ENST00000438035.1 ENST00000453929.2	FASTKD1	FAST kinase domains 1
chr2_-_170430366	1.23	ENST00000453153.2 ENST00000445210.1	FASTKD1	FAST kinase domains 1
chr10_-_115614127	1.22	ENST00000369305.1	DCLRE1A	DNA cross-link repair 1A
chr6_+_32812568	1.14	ENST00000414474.1	PSMB9	proteasome (prosome, macropain) subunit, beta type, 9
chr4_-_76944621	1.04	ENST00000306602.1	CXCL10	chemokine (C-X-C motif) ligand 10
chr14_+_39583427	1.04	ENST00000308317.6 ENST00000396249.2 ENST00000250379.8 ENST00000534684.2 ENST00000527381.1	GEMIN2	gem (nuclear organelle) associated protein 2
chr17_-_29641084	1.03	ENST00000544462.1	EVI2B	ecotropic viral integration site 2B
chr8_+_86089460	0.99	ENST00000418930.2	E2F5	E2F transcription factor 5, p130-binding
chr8_+_86089619	0.95	ENST00000256117.5 ENST00000416274.2	E2F5	E2F transcription factor 5, p130-binding
chr2_+_143635222	0.86	ENST00000375773.2 ENST00000409512.1 ENST00000410015.2	KYNU	kynureninase
chr1_-_39339777	0.80	ENST00000397572.2	MYCBP	MYC binding protein
chr4_-_144940477	0.79	ENST00000513128.1 ENST00000429670.2 ENST00000502664.1	GYPB	glycophorin B (MNS blood group)
chr2_+_191334212	0.78	ENST00000444317.1 ENST00000535751.1	MFSD6	major facilitator superfamily domain containing 6
chr2_+_90198535	0.77	ENST00000390276.2	IGKV1D-12	immunoglobulin kappa variable 1D-12
chr4_-_144826682	0.73	ENST00000358615.4 ENST00000437468.2	GYPE	glycophorin E (MNS blood group)
chr7_-_5998714	0.73	ENST00000539903.1	RSPH10B	radial spoke head 10 homolog B (Chlamydomonas)
chr12_-_118628350	0.72	ENST00000537952.1 ENST00000537822.1	TAOK3	TAO kinase 3
chr13_+_33160553	0.72	ENST00000315596.10	PDS5B	PDS5, regulator of cohesion maintenance, homolog B (S. cerevisiae)
chr4_-_84035868	0.72	ENST00000426923.2 ENST00000509973.1	PLAC8	placenta-specific 8
chr15_+_66797627	0.71	ENST00000565627.1 ENST00000564179.1	ZWILCH	zwilch kinetochore protein
chr15_+_66797455	0.69	ENST00000446801.2	ZWILCH	zwilch kinetochore protein
chr2_-_176046391	0.69	ENST00000392541.3 ENST00000409194.1	ATP5G3	ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C3 (subunit 9)
chr1_-_241799232	0.68	ENST00000366553.1	CHML	choroideremia-like (Rab escort protein 2)
chr3_+_178276488	0.65	ENST00000432997.1 ENST00000455865.1	KCNMB2	potassium large conductance calcium-activated channel, subfamily M, beta member 2
chr17_-_47723943	0.64	ENST00000510476.1 ENST00000503676.1	SPOP	speckle-type POZ protein
chr3_+_182511266	0.63	ENST00000323116.5 ENST00000493826.1	ATP11B	ATPase, class VI, type 11B
chr6_+_24775153	0.62	ENST00000356509.3 ENST00000230056.3	GMNN	geminin, DNA replication inhibitor
chr2_-_191115229	0.61	ENST00000409820.2 ENST00000410045.1	HIBCH	3-hydroxyisobutyryl-CoA hydrolase
chrX_-_33229636	0.58	ENST00000357033.4	DMD	dystrophin
chr13_+_51483814	0.56	ENST00000336617.3 ENST00000422660.1	RNASEH2B	ribonuclease H2, subunit B
chr4_-_84035905	0.56	ENST00000311507.4	PLAC8	placenta-specific 8
chrX_-_110513703	0.54	ENST00000324068.1	CAPN6	calpain 6
chr11_-_104905840	0.53	ENST00000526568.1 ENST00000393136.4 ENST00000531166.1 ENST00000534497.1 ENST00000527979.1 ENST00000446369.1 ENST00000353247.5 ENST00000528974.1 ENST00000533400.1 ENST00000525825.1 ENST00000436863.3	CASP1	caspase 1, apoptosis-related cysteine peptidase
chrX_+_149887090	0.52	ENST00000538506.1	MTMR1	myotubularin related protein 1
chr17_+_7155819	0.49	ENST00000570322.1 ENST00000576496.1 ENST00000574841.2	ELP5	elongator acetyltransferase complex subunit 5
chr11_-_128457446	0.49	ENST00000392668.4	ETS1	v-ets avian erythroblastosis virus E26 oncogene homolog 1
chr8_-_86253888	0.48	ENST00000522389.1 ENST00000432364.2 ENST00000517618.1	CA1	carbonic anhydrase I
chr14_-_106725723	0.47	ENST00000390609.2	IGHV3-23	immunoglobulin heavy variable 3-23
chr18_-_74728998	0.45	ENST00000359645.3 ENST00000397875.3 ENST00000397869.3 ENST00000578193.1 ENST00000578873.1 ENST00000397866.4 ENST00000528160.1 ENST00000527041.1 ENST00000526111.1 ENST00000397865.5 ENST00000382582.3	MBP	myelin basic protein
chr1_+_95616933	0.43	ENST00000604203.1	RP11-57H12.6	TMEM56-RWDD3 readthrough
chr7_+_77469439	0.43	ENST00000450574.1 ENST00000416283.2 ENST00000248550.7	PHTF2	putative homeodomain transcription factor 2
chrX_+_118602363	0.43	ENST00000317881.8	SLC25A5	solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 5
chr19_-_56826157	0.43	ENST00000592509.1 ENST00000592679.1 ENST00000588442.1 ENST00000593106.1 ENST00000587492.1 ENST00000254165.3	ZSCAN5A	zinc finger and SCAN domain containing 5A
chr4_-_76928641	0.43	ENST00000264888.5	CXCL9	chemokine (C-X-C motif) ligand 9
chr17_+_58018269	0.42	ENST00000591035.1	RP11-178C3.1	Uncharacterized protein
chr6_-_28220002	0.42	ENST00000377294.2	ZKSCAN4	zinc finger with KRAB and SCAN domains 4
chrX_-_72434628	0.42	ENST00000536638.1 ENST00000373517.3	NAP1L2	nucleosome assembly protein 1-like 2
chr17_-_46690839	0.40	ENST00000498634.2	HOXB8	homeobox B8
chr11_+_92085262	0.40	ENST00000298047.6 ENST00000409404.2 ENST00000541502.1	FAT3	FAT atypical cadherin 3
chr21_-_19775973	0.40	ENST00000284885.3	TMPRSS15	transmembrane protease, serine 15
chr19_+_52800410	0.39	ENST00000595962.1 ENST00000598016.1 ENST00000334564.7 ENST00000490272.1	ZNF480	zinc finger protein 480
chr1_-_197036364	0.38	ENST00000367412.1	F13B	coagulation factor XIII, B polypeptide
chr19_-_53466095	0.37	ENST00000391786.2 ENST00000434371.2 ENST00000357666.4 ENST00000438970.2 ENST00000270457.4 ENST00000535506.1 ENST00000444460.2 ENST00000457013.2	ZNF816	zinc finger protein 816
chr6_-_133055815	0.36	ENST00000509351.1 ENST00000417437.2 ENST00000414302.2 ENST00000423615.2 ENST00000427187.2 ENST00000275223.3 ENST00000519686.2	VNN3	vanin 3
chr9_+_70856397	0.36	ENST00000360171.6	CBWD3	COBW domain containing 3
chr7_+_120629653	0.36	ENST00000450913.2 ENST00000340646.5	CPED1	cadherin-like and PC-esterase domain containing 1
chr18_-_57027194	0.34	ENST00000251047.5	LMAN1	lectin, mannose-binding, 1
chr5_-_78808617	0.33	ENST00000282260.6 ENST00000508576.1 ENST00000535690.1	HOMER1	homer homolog 1 (Drosophila)
chr6_+_118869452	0.32	ENST00000357525.5	PLN	phospholamban
chr9_-_21228221	0.32	ENST00000413767.2	IFNA17	interferon, alpha 17
chr21_+_35736302	0.32	ENST00000290310.3	KCNE2	potassium voltage-gated channel, Isk-related family, member 2
chr17_-_73389737	0.32	ENST00000392563.1	GRB2	growth factor receptor-bound protein 2
chr4_+_118955500	0.31	ENST00000296499.5	NDST3	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3
chr1_-_236046872	0.31	ENST00000536965.1	LYST	lysosomal trafficking regulator
chr2_-_225434538	0.31	ENST00000409096.1	CUL3	cullin 3
chrX_+_120181457	0.28	ENST00000328078.1	GLUD2	glutamate dehydrogenase 2
chr3_-_107777208	0.28	ENST00000398258.3	CD47	CD47 molecule
chr1_+_44870866	0.28	ENST00000355387.2 ENST00000361799.2	RNF220	ring finger protein 220
chr2_+_114647504	0.28	ENST00000263238.2	ACTR3	ARP3 actin-related protein 3 homolog (yeast)
chr5_-_96518907	0.28	ENST00000508447.1 ENST00000283109.3	RIOK2	RIO kinase 2
chr17_-_39191107	0.27	ENST00000344363.5	KRTAP1-3	keratin associated protein 1-3
chrX_+_12993336	0.26	ENST00000380635.1	TMSB4X	thymosin beta 4, X-linked
chr15_+_52155001	0.26	ENST00000544199.1	TMOD3	tropomodulin 3 (ubiquitous)
chr8_+_104892639	0.26	ENST00000436393.2	RIMS2	regulating synaptic membrane exocytosis 2
chr14_+_65878565	0.26	ENST00000556518.1 ENST00000557164.1	FUT8	fucosyltransferase 8 (alpha (1,6) fucosyltransferase)
chr5_-_41261540	0.26	ENST00000263413.3	C6	complement component 6
chr2_-_228244013	0.25	ENST00000304568.3	TM4SF20	transmembrane 4 L six family member 20
chr4_+_69313145	0.24	ENST00000305363.4	TMPRSS11E	transmembrane protease, serine 11E
chr5_+_140207536	0.23	ENST00000529310.1 ENST00000527624.1	PCDHA6	protocadherin alpha 6
chr9_+_12693336	0.22	ENST00000381137.2 ENST00000388918.5	TYRP1	tyrosinase-related protein 1
chr6_+_10528560	0.22	ENST00000379597.3	GCNT2	glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group)
chr2_+_210444748	0.22	ENST00000392194.1	MAP2	microtubule-associated protein 2
chrX_+_135730373	0.21	ENST00000370628.2	CD40LG	CD40 ligand
chr6_+_63921351	0.20	ENST00000370659.1	FKBP1C	FK506 binding protein 1C
chr17_-_39646116	0.20	ENST00000328119.6	KRT36	keratin 36
chr5_-_138775177	0.20	ENST00000302060.5	DNAJC18	DnaJ (Hsp40) homolog, subfamily C, member 18
chr21_-_31588365	0.20	ENST00000399899.1	CLDN8	claudin 8
chr22_-_19466683	0.20	ENST00000399523.1 ENST00000421968.2 ENST00000447868.1	UFD1L	ubiquitin fusion degradation 1 like (yeast)
chr8_-_80942061	0.20	ENST00000519386.1	MRPS28	mitochondrial ribosomal protein S28
chr12_-_21927736	0.19	ENST00000240662.2	KCNJ8	potassium inwardly-rectifying channel, subfamily J, member 8
chr4_+_88720698	0.19	ENST00000226284.5	IBSP	integrin-binding sialoprotein
chr2_+_185463093	0.19	ENST00000302277.6	ZNF804A	zinc finger protein 804A
chr5_+_140248518	0.19	ENST00000398640.2	PCDHA11	protocadherin alpha 11
chr12_+_58176525	0.18	ENST00000543727.1 ENST00000540550.1 ENST00000323833.8 ENST00000350762.5 ENST00000550559.1 ENST00000548851.1 ENST00000434359.1 ENST00000457189.1	TSFM	Ts translation elongation factor, mitochondrial
chr12_+_15125954	0.17	ENST00000266395.2	PDE6H	phosphodiesterase 6H, cGMP-specific, cone, gamma
chr1_+_197237352	0.17	ENST00000538660.1 ENST00000367400.3 ENST00000367399.2	CRB1	crumbs homolog 1 (Drosophila)
chr8_-_117886955	0.17	ENST00000297338.2	RAD21	RAD21 homolog (S. pombe)
chr12_-_118797475	0.17	ENST00000541786.1 ENST00000419821.2 ENST00000541878.1	TAOK3	TAO kinase 3
chr12_+_9980069	0.16	ENST00000354855.3 ENST00000324214.4 ENST00000279544.3	KLRF1	killer cell lectin-like receptor subfamily F, member 1
chr7_+_93535866	0.16	ENST00000429473.1 ENST00000430875.1 ENST00000428834.1	GNGT1	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 1
chr15_+_57998923	0.15	ENST00000380557.4	POLR2M	polymerase (RNA) II (DNA directed) polypeptide M
chr19_+_54619125	0.15	ENST00000445811.1 ENST00000419967.1 ENST00000445124.1 ENST00000447810.1	PRPF31	pre-mRNA processing factor 31
chr18_+_21452804	0.15	ENST00000269217.6	LAMA3	laminin, alpha 3
chr7_-_38289173	0.15	ENST00000436911.2	TRGC2	T cell receptor gamma constant 2
chr15_+_58430368	0.14	ENST00000558772.1 ENST00000219919.4	AQP9	aquaporin 9
chr8_-_20040601	0.14	ENST00000265808.7 ENST00000522513.1	SLC18A1	solute carrier family 18 (vesicular monoamine transporter), member 1
chr4_+_71263599	0.14	ENST00000399575.2	PROL1	proline rich, lacrimal 1
chr4_+_71296204	0.14	ENST00000413702.1	MUC7	mucin 7, secreted
chrX_+_135730297	0.14	ENST00000370629.2	CD40LG	CD40 ligand
chr16_+_4545853	0.14	ENST00000575129.1 ENST00000398595.3 ENST00000414777.1	HMOX2	heme oxygenase (decycling) 2
chr7_-_80141328	0.14	ENST00000398291.3	GNAT3	guanine nucleotide binding protein, alpha transducing 3
chr10_-_105845674	0.13	ENST00000353479.5 ENST00000369733.3	COL17A1	collagen, type XVII, alpha 1
chr22_-_19466732	0.13	ENST00000263202.10 ENST00000360834.4	UFD1L	ubiquitin fusion degradation 1 like (yeast)
chr3_-_116163830	0.13	ENST00000333617.4	LSAMP	limbic system-associated membrane protein
chrX_+_99839799	0.13	ENST00000373031.4	TNMD	tenomodulin
chr1_-_152332480	0.13	ENST00000388718.5	FLG2	filaggrin family member 2
chr2_+_145780739	0.13	ENST00000597173.1 ENST00000602108.1 ENST00000420472.1	TEX41	testis expressed 41 (non-protein coding)
chr3_+_145782358	0.12	ENST00000422482.1	AC107021.1	HCG1786590; PRO2533; Uncharacterized protein
chr6_+_46761118	0.11	ENST00000230588.4	MEP1A	meprin A, alpha (PABA peptide hydrolase)
chr8_-_20040638	0.11	ENST00000519026.1 ENST00000276373.5 ENST00000440926.1 ENST00000437980.1	SLC18A1	solute carrier family 18 (vesicular monoamine transporter), member 1
chr11_+_49050504	0.11	ENST00000332682.7	TRIM49B	tripartite motif containing 49B
chr10_+_98064085	0.11	ENST00000419175.1 ENST00000371174.2	DNTT	DNA nucleotidylexotransferase
chr11_+_69924639	0.11	ENST00000538023.1 ENST00000398543.2	ANO1	anoctamin 1, calcium activated chloride channel
chr11_+_63606373	0.11	ENST00000402010.2 ENST00000315032.8 ENST00000377809.4 ENST00000413835.2 ENST00000377810.3	MARK2	MAP/microtubule affinity-regulating kinase 2
chr11_+_12115543	0.10	ENST00000537344.1 ENST00000532179.1 ENST00000526065.1	MICAL2	microtubule associated monooxygenase, calponin and LIM domain containing 2
chr10_-_13523073	0.10	ENST00000440282.1	BEND7	BEN domain containing 7
chrY_+_15815447	0.10	ENST00000284856.3	TMSB4Y	thymosin beta 4, Y-linked
chr4_+_71108300	0.09	ENST00000304954.3	CSN3	casein kappa
chr7_+_93535817	0.09	ENST00000248572.5	GNGT1	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 1
chr9_-_21239978	0.09	ENST00000380222.2	IFNA14	interferon, alpha 14
chr5_-_39274617	0.09	ENST00000510188.1	FYB	FYN binding protein
chr10_+_17794251	0.08	ENST00000377495.1 ENST00000338221.5	TMEM236	transmembrane protein 236
chr6_+_72926145	0.08	ENST00000425662.2 ENST00000453976.2	RIMS1	regulating synaptic membrane exocytosis 1
chr9_-_215744	0.08	ENST00000382387.2	C9orf66	chromosome 9 open reading frame 66
chr1_+_67632083	0.08	ENST00000347310.5 ENST00000371002.1	IL23R	interleukin 23 receptor
chr1_+_16083154	0.08	ENST00000375771.1	FBLIM1	filamin binding LIM protein 1
chr15_+_58430567	0.08	ENST00000536493.1	AQP9	aquaporin 9
chr9_+_124103625	0.07	ENST00000594963.1	AL161784.1	Uncharacterized protein
chr3_-_195310802	0.07	ENST00000421243.1 ENST00000453131.1	APOD	apolipoprotein D
chr16_-_20556492	0.07	ENST00000568098.1	ACSM2B	acyl-CoA synthetase medium-chain family member 2B
chr4_-_168155577	0.07	ENST00000541354.1 ENST00000509854.1 ENST00000512681.1 ENST00000421836.2 ENST00000510741.1 ENST00000510403.1	SPOCK3	sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3
chr2_+_25015968	0.07	ENST00000380834.2 ENST00000473706.1	CENPO	centromere protein O
chr12_+_9144626	0.06	ENST00000543895.1	KLRG1	killer cell lectin-like receptor subfamily G, member 1
chr8_-_25281747	0.06	ENST00000421054.2	GNRH1	gonadotropin-releasing hormone 1 (luteinizing-releasing hormone)
chr12_-_11002063	0.06	ENST00000544994.1 ENST00000228811.4 ENST00000540107.1	PRR4	proline rich 4 (lacrimal)
chr1_-_165414414	0.06	ENST00000359842.5	RXRG	retinoid X receptor, gamma
chr1_-_67266939	0.05	ENST00000304526.2	INSL5	insulin-like 5
chr11_+_61957687	0.05	ENST00000306238.3	SCGB1D1	secretoglobin, family 1D, member 1
chr2_+_145780767	0.05	ENST00000599358.1 ENST00000596278.1 ENST00000596747.1 ENST00000608652.1 ENST00000609705.1 ENST00000608432.1 ENST00000596970.1 ENST00000602041.1 ENST00000601578.1 ENST00000596034.1 ENST00000414195.2 ENST00000594837.1	TEX41	testis expressed 41 (non-protein coding)
chr4_-_68749745	0.05	ENST00000283916.6	TMPRSS11D	transmembrane protease, serine 11D
chr2_-_228497888	0.05	ENST00000264387.4 ENST00000409066.1	C2orf83	chromosome 2 open reading frame 83
chr6_-_49712123	0.05	ENST00000263045.4	CRISP3	cysteine-rich secretory protein 3
chr3_+_155838337	0.05	ENST00000490337.1 ENST00000389636.5	KCNAB1	potassium voltage-gated channel, shaker-related subfamily, beta member 1
chr2_+_173686303	0.04	ENST00000397087.3	RAPGEF4	Rap guanine nucleotide exchange factor (GEF) 4
chr6_+_45390222	0.04	ENST00000359524.5	RUNX2	runt-related transcription factor 2
chr5_-_147211226	0.04	ENST00000296695.5	SPINK1	serine peptidase inhibitor, Kazal type 1
chr4_-_68749699	0.04	ENST00000545541.1	TMPRSS11D	transmembrane protease, serine 11D
chr3_-_167191814	0.04	ENST00000466903.1 ENST00000264677.4	SERPINI2	serpin peptidase inhibitor, clade I (pancpin), member 2
chrX_-_109590174	0.04	ENST00000372054.1	GNG5P2	guanine nucleotide binding protein (G protein), gamma 5 pseudogene 2
chr14_+_81421355	0.04	ENST00000541158.2	TSHR	thyroid stimulating hormone receptor
chr11_+_30253410	0.04	ENST00000533718.1	FSHB	follicle stimulating hormone, beta polypeptide
chr18_-_24443151	0.03	ENST00000440832.3	AQP4	aquaporin 4
chr2_+_234668894	0.03	ENST00000305208.5 ENST00000608383.1 ENST00000360418.3	UGT1A8 UGT1A1	UDP glucuronosyltransferase 1 family, polypeptide A1 UDP glucuronosyltransferase 1 family, polypeptide A8
chr1_-_59043166	0.02	ENST00000371225.2	TACSTD2	tumor-associated calcium signal transducer 2
chr18_-_5396271	0.02	ENST00000579951.1	EPB41L3	erythrocyte membrane protein band 4.1-like 3
chr4_+_88529681	0.02	ENST00000399271.1	DSPP	dentin sialophosphoprotein
chr2_+_1418154	0.01	ENST00000423320.1 ENST00000382198.1	TPO	thyroid peroxidase
chr12_-_11463353	0.01	ENST00000279575.1 ENST00000535904.1 ENST00000445719.2	PRB4	proline-rich protein BstNI subfamily 4
chr18_-_53069419	0.01	ENST00000570177.2	TCF4	transcription factor 4
chr1_+_181057638	0.01	ENST00000367577.4	IER5	immediate early response 5
chr4_-_168155700	0.01	ENST00000357545.4 ENST00000512648.1	SPOCK3	sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3
chr6_+_73076432	0.01	ENST00000414192.2	RIMS1	regulating synaptic membrane exocytosis 1
chr11_-_102401469	0.01	ENST00000260227.4	MMP7	matrix metallopeptidase 7 (matrilysin, uterine)
chr14_+_22615942	0.01	ENST00000390457.2	TRAV27	T cell receptor alpha variable 27
chr5_+_135496675	0.01	ENST00000507637.1	SMAD5	SMAD family member 5
chr15_-_66797172	0.00	ENST00000569438.1 ENST00000569696.1 ENST00000307961.6	RPL4	ribosomal protein L4
chr6_-_74231444	0.00	ENST00000331523.2 ENST00000356303.2	EEF1A1	eukaryotic translation elongation factor 1 alpha 1

Gene overrepresentation in molecular_function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.9	3.6	GO:0016822	hydrolase activity, acting on acid carbon-carbon bonds(GO:0016822) hydrolase activity, acting on acid carbon-carbon bonds, in ketonic substances(GO:0016823)
0.3	1.5	GO:0048248	CXCR3 chemokine receptor binding(GO:0048248)
0.2	1.7	GO:0008142	oxysterol binding(GO:0008142)
0.2	2.2	GO:0005094	Rho GDP-dissociation inhibitor activity(GO:0005094)
0.2	1.5	GO:0004126	cytidine deaminase activity(GO:0004126)
0.2	1.2	GO:0035312	5'-3' exodeoxyribonuclease activity(GO:0035312)
0.1	0.6	GO:0004523	RNA-DNA hybrid ribonuclease activity(GO:0004523)
0.1	1.8	GO:0005344	oxygen transporter activity(GO:0005344)
0.1	0.4	GO:0005174	CD40 receptor binding(GO:0005174)
0.1	1.4	GO:0089720	caspase binding(GO:0089720)
0.1	0.4	GO:0015207	ATP:ADP antiporter activity(GO:0005471) adenine transmembrane transporter activity(GO:0015207)
0.1	1.6	GO:0019992	diacylglycerol binding(GO:0019992)
0.1	1.3	GO:0032395	MHC class II receptor activity(GO:0032395)
0.1	0.3	GO:0008424	glycoprotein 6-alpha-L-fucosyltransferase activity(GO:0008424) alpha-(1->6)-fucosyltransferase activity(GO:0046921)
0.1	0.3	GO:0015222	serotonin transmembrane transporter activity(GO:0015222)
0.1	2.2	GO:0008157	protein phosphatase 1 binding(GO:0008157)
0.1	0.3	GO:0042030	ATPase inhibitor activity(GO:0042030)
0.1	0.3	GO:0031208	POZ domain binding(GO:0031208)
0.1	2.1	GO:0005001	transmembrane receptor protein tyrosine phosphatase activity(GO:0005001) transmembrane receptor protein phosphatase activity(GO:0019198)
0.1	0.4	GO:0017159	pantetheine hydrolase activity(GO:0017159)
0.1	0.3	GO:0016639	oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor(GO:0016639)
0.1	0.2	GO:0017098	sulfonylurea receptor binding(GO:0017098)
0.1	0.5	GO:0004064	arylesterase activity(GO:0004064)
0.1	0.2	GO:0015254	glycerol channel activity(GO:0015254) urea channel activity(GO:0015265)
0.1	0.3	GO:0015016	[heparan sulfate]-glucosamine N-sulfotransferase activity(GO:0015016)
0.1	1.3	GO:0031489	myosin V binding(GO:0031489)
0.0	0.1	GO:0004392	heme oxygenase (decyclizing) activity(GO:0004392)
0.0	0.7	GO:0005092	GDP-dissociation inhibitor activity(GO:0005092)
0.0	0.5	GO:0052629	phosphatidylinositol-3,5-bisphosphate 3-phosphatase activity(GO:0052629)
0.0	1.1	GO:0070003	threonine-type endopeptidase activity(GO:0004298) threonine-type peptidase activity(GO:0070003)
0.0	0.4	GO:0019911	structural constituent of myelin sheath(GO:0019911)
0.0	0.6	GO:0016289	CoA hydrolase activity(GO:0016289)
0.0	0.2	GO:0008109	N-acetyllactosaminide beta-1,6-N-acetylglucosaminyltransferase activity(GO:0008109)
0.0	0.4	GO:0030280	structural constituent of epidermis(GO:0030280)
0.0	0.4	GO:0005132	type I interferon receptor binding(GO:0005132)
0.0	0.3	GO:1902282	voltage-gated potassium channel activity involved in ventricular cardiac muscle cell action potential repolarization(GO:1902282)
0.0	0.3	GO:0070053	thrombospondin receptor activity(GO:0070053)
0.0	0.5	GO:0008656	cysteine-type endopeptidase activator activity involved in apoptotic process(GO:0008656)
0.0	0.6	GO:0050998	nitric-oxide synthase binding(GO:0050998)
0.0	0.9	GO:0004709	MAP kinase kinase kinase activity(GO:0004709)
0.0	0.7	GO:0046933	proton-transporting ATP synthase activity, rotational mechanism(GO:0046933)
0.0	0.6	GO:0004012	phospholipid-translocating ATPase activity(GO:0004012)
0.0	0.6	GO:0015269	calcium-activated potassium channel activity(GO:0015269)
0.0	0.3	GO:0035256	G-protein coupled glutamate receptor binding(GO:0035256)
0.0	0.3	GO:0005168	neurotrophin TRKA receptor binding(GO:0005168)
0.0	0.2	GO:0030621	U4 snRNA binding(GO:0030621)
0.0	0.1	GO:0015111	iodide transmembrane transporter activity(GO:0015111)
0.0	0.1	GO:0032393	MHC class I receptor activity(GO:0032393)
0.0	0.1	GO:0042020	interleukin-23 binding(GO:0042019) interleukin-23 receptor activity(GO:0042020)
0.0	0.3	GO:0005537	mannose binding(GO:0005537)
0.0	0.0	GO:0015234	thiamine transmembrane transporter activity(GO:0015234) thiamine uptake transmembrane transporter activity(GO:0015403)
0.0	0.1	GO:0004886	9-cis retinoic acid receptor activity(GO:0004886)
0.0	0.5	GO:0004198	calcium-dependent cysteine-type endopeptidase activity(GO:0004198)
0.0	0.5	GO:0035035	histone acetyltransferase binding(GO:0035035)

Gene overrepresentation in C2:CP:REACTOME category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.3	3.6	REACTOME TRYPTOPHAN CATABOLISM	Genes involved in Tryptophan catabolism
0.1	1.9	REACTOME THE NLRP3 INFLAMMASOME	Genes involved in The NLRP3 inflammasome
0.1	2.1	REACTOME PHOSPHORYLATION OF CD3 AND TCR ZETA CHAINS	Genes involved in Phosphorylation of CD3 and TCR zeta chains
0.1	1.9	REACTOME G0 AND EARLY G1	Genes involved in G0 and Early G1
0.1	1.3	REACTOME INSULIN SYNTHESIS AND PROCESSING	Genes involved in Insulin Synthesis and Processing
0.0	0.4	REACTOME INTERACTIONS OF VPR WITH HOST CELLULAR PROTEINS	Genes involved in Interactions of Vpr with host cellular proteins
0.0	0.6	REACTOME ASSOCIATION OF LICENSING FACTORS WITH THE PRE REPLICATIVE COMPLEX	Genes involved in Association of licensing factors with the pre-replicative complex
0.0	0.5	REACTOME REVERSIBLE HYDRATION OF CARBON DIOXIDE	Genes involved in Reversible Hydration of Carbon Dioxide
0.0	0.4	REACTOME COMMON PATHWAY	Genes involved in Common Pathway
0.0	0.6	REACTOME BRANCHED CHAIN AMINO ACID CATABOLISM	Genes involved in Branched-chain amino acid catabolism
0.0	1.2	REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES	Genes involved in Chemokine receptors bind chemokines
0.0	0.7	REACTOME SIGNAL REGULATORY PROTEIN SIRP FAMILY INTERACTIONS	Genes involved in Signal regulatory protein (SIRP) family interactions
0.0	2.7	REACTOME DOWNSTREAM SIGNALING EVENTS OF B CELL RECEPTOR BCR	Genes involved in Downstream Signaling Events Of B Cell Receptor (BCR)
0.0	0.3	REACTOME PASSIVE TRANSPORT BY AQUAPORINS	Genes involved in Passive Transport by Aquaporins
0.0	1.5	REACTOME IMMUNOREGULATORY INTERACTIONS BETWEEN A LYMPHOID AND A NON LYMPHOID CELL	Genes involved in Immunoregulatory interactions between a Lymphoid and a non-Lymphoid cell
0.0	1.5	REACTOME MITOTIC PROMETAPHASE	Genes involved in Mitotic Prometaphase
0.0	0.6	REACTOME CGMP EFFECTS	Genes involved in cGMP effects
0.0	1.0	REACTOME METABOLISM OF NON CODING RNA	Genes involved in Metabolism of non-coding RNA
0.0	0.4	REACTOME REGULATION OF IFNA SIGNALING	Genes involved in Regulation of IFNA signaling
0.0	1.9	REACTOME TOLL RECEPTOR CASCADES	Genes involved in Toll Receptor Cascades
0.0	0.5	REACTOME SYNTHESIS OF PIPS AT THE PLASMA MEMBRANE	Genes involved in Synthesis of PIPs at the plasma membrane
0.0	0.2	REACTOME G BETA GAMMA SIGNALLING THROUGH PI3KGAMMA	Genes involved in G beta:gamma signalling through PI3Kgamma
0.0	0.6	REACTOME ION TRANSPORT BY P TYPE ATPASES	Genes involved in Ion transport by P-type ATPases
0.0	0.3	REACTOME NA CL DEPENDENT NEUROTRANSMITTER TRANSPORTERS	Genes involved in Na+/Cl- dependent neurotransmitter transporters

Gene overrepresentation in biological_process category:

Log-likelihood per target	Total log-likelihood	Term	Description
1.2	3.6	GO:0097052	tryptophan catabolic process to acetyl-CoA(GO:0019442) L-kynurenine metabolic process(GO:0097052)
0.6	2.2	GO:0071461	cellular response to redox state(GO:0071461)
0.6	1.7	GO:0061470	T follicular helper cell differentiation(GO:0061470)
0.5	1.9	GO:0050717	positive regulation of interleukin-1 alpha secretion(GO:0050717)
0.4	2.1	GO:0002378	immunoglobulin biosynthetic process(GO:0002378) bone marrow development(GO:0048539)
0.3	2.8	GO:0031666	positive regulation of lipopolysaccharide-mediated signaling pathway(GO:0031666)
0.2	1.5	GO:0090308	regulation of methylation-dependent chromatin silencing(GO:0090308)
0.2	1.3	GO:1903435	positive regulation of constitutive secretory pathway(GO:1903435)
0.2	1.0	GO:1901509	regulation of endothelial tube morphogenesis(GO:1901509)
0.2	0.6	GO:0015917	aminophospholipid transport(GO:0015917)
0.1	0.6	GO:0006574	valine catabolic process(GO:0006574)
0.1	1.8	GO:0015671	oxygen transport(GO:0015671)
0.1	1.2	GO:0031848	protection from non-homologous end joining at telomere(GO:0031848)
0.1	0.3	GO:0007206	phospholipase C-activating G-protein coupled glutamate receptor signaling pathway(GO:0007206)
0.1	0.6	GO:2000676	positive regulation of type B pancreatic cell apoptotic process(GO:2000676)
0.1	0.3	GO:0086092	regulation of the force of heart contraction by cardiac conduction(GO:0086092) regulation of calcium ion binding(GO:1901876) negative regulation of calcium ion binding(GO:1901877) regulation of calcium ion import into sarcoplasmic reticulum(GO:1902080) negative regulation of calcium ion import into sarcoplasmic reticulum(GO:1902081)
0.1	0.3	GO:0033364	mast cell secretory granule organization(GO:0033364)
0.1	0.6	GO:0071163	DNA replication preinitiation complex assembly(GO:0071163)
0.1	0.3	GO:0016344	meiotic chromosome movement towards spindle pole(GO:0016344)
0.1	0.3	GO:0090070	positive regulation of ribosome biogenesis(GO:0090070) positive regulation of rRNA processing(GO:2000234)
0.1	0.4	GO:1904209	regulation of chemokine (C-C motif) ligand 2 secretion(GO:1904207) positive regulation of chemokine (C-C motif) ligand 2 secretion(GO:1904209)
0.1	0.3	GO:0036071	N-glycan fucosylation(GO:0036071)
0.1	0.4	GO:2000035	regulation of stem cell division(GO:2000035)
0.1	0.3	GO:1901979	regulation of inward rectifier potassium channel activity(GO:1901979) regulation of cyclic nucleotide-gated ion channel activity(GO:1902159)
0.1	0.3	GO:0001831	trophectodermal cellular morphogenesis(GO:0001831)
0.1	0.7	GO:0018344	protein geranylgeranylation(GO:0018344)
0.1	0.4	GO:1901029	adenine transport(GO:0015853) negative regulation of mitochondrial outer membrane permeabilization involved in apoptotic signaling pathway(GO:1901029)
0.1	1.3	GO:0040015	negative regulation of multicellular organism growth(GO:0040015)
0.1	0.3	GO:0001970	positive regulation of activation of membrane attack complex(GO:0001970)
0.1	0.5	GO:0030578	PML body organization(GO:0030578)
0.1	0.2	GO:0045876	positive regulation of sister chromatid cohesion(GO:0045876)
0.1	0.4	GO:0043950	positive regulation of cAMP-mediated signaling(GO:0043950)
0.1	0.6	GO:0014809	regulation of skeletal muscle contraction by regulation of release of sequestered calcium ion(GO:0014809)
0.1	0.2	GO:0051685	maintenance of ER location(GO:0051685)
0.0	0.1	GO:0006788	heme oxidation(GO:0006788)
0.0	0.1	GO:0050917	sensory perception of sweet taste(GO:0050916) sensory perception of umami taste(GO:0050917)
0.0	0.2	GO:0015722	purine nucleobase transport(GO:0006863) canalicular bile acid transport(GO:0015722) pyrimidine nucleobase transport(GO:0015855) urea transmembrane transport(GO:0071918) purine nucleobase transmembrane transport(GO:1904823)
0.0	0.3	GO:0051694	pointed-end actin filament capping(GO:0051694)
0.0	0.3	GO:0006537	glutamate biosynthetic process(GO:0006537)
0.0	0.7	GO:0007064	mitotic sister chromatid cohesion(GO:0007064)
0.0	0.3	GO:2000483	negative regulation of interleukin-8 secretion(GO:2000483)
0.0	0.4	GO:0015939	pantothenate metabolic process(GO:0015939)
0.0	0.9	GO:0007095	mitotic G2 DNA damage checkpoint(GO:0007095)
0.0	0.1	GO:0019417	sulfur oxidation(GO:0019417)
0.0	0.6	GO:0005513	detection of calcium ion(GO:0005513)
0.0	0.1	GO:0035990	tendon cell differentiation(GO:0035990) tendon formation(GO:0035992)
0.0	0.2	GO:0036438	maintenance of lens transparency(GO:0036438)
0.0	0.3	GO:0015014	heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process(GO:0015014)
0.0	0.1	GO:1990637	response to prolactin(GO:1990637)
0.0	0.3	GO:0061669	spontaneous neurotransmitter secretion(GO:0061669) spontaneous synaptic transmission(GO:0098814)
0.0	0.6	GO:2000001	regulation of DNA damage checkpoint(GO:2000001)
0.0	0.2	GO:0048254	snoRNA localization(GO:0048254)
0.0	0.2	GO:0048023	positive regulation of melanin biosynthetic process(GO:0048023) positive regulation of secondary metabolite biosynthetic process(GO:1900378)
0.0	0.3	GO:0034498	early endosome to Golgi transport(GO:0034498)
0.0	0.1	GO:2000097	regulation of smooth muscle cell-matrix adhesion(GO:2000097)
0.0	1.6	GO:0002381	immunoglobulin production involved in immunoglobulin mediated immune response(GO:0002381)
0.0	1.0	GO:0000387	spliceosomal snRNP assembly(GO:0000387)
0.0	0.7	GO:0042776	mitochondrial ATP synthesis coupled proton transport(GO:0042776)
0.0	0.4	GO:0033141	positive regulation of peptidyl-serine phosphorylation of STAT protein(GO:0033141)
0.0	0.1	GO:0015842	aminergic neurotransmitter loading into synaptic vesicle(GO:0015842)
0.0	0.4	GO:0021516	dorsal spinal cord development(GO:0021516)
0.0	0.1	GO:0038155	interleukin-23-mediated signaling pathway(GO:0038155)
0.0	0.3	GO:0060670	branching involved in labyrinthine layer morphogenesis(GO:0060670)
0.0	0.5	GO:0046856	phosphatidylinositol dephosphorylation(GO:0046856)
0.0	2.2	GO:0031532	actin cytoskeleton reorganization(GO:0031532)
0.0	0.2	GO:0070129	regulation of mitochondrial translation(GO:0070129)
0.0	0.1	GO:0042989	sequestering of actin monomers(GO:0042989)
0.0	0.0	GO:0015888	thiamine transport(GO:0015888) thiamine transmembrane transport(GO:0071934)
0.0	0.4	GO:0050817	blood coagulation(GO:0007596) hemostasis(GO:0007599) coagulation(GO:0050817)
0.0	0.0	GO:0010751	negative regulation of nitric oxide mediated signal transduction(GO:0010751)
0.0	0.1	GO:2000253	positive regulation of feeding behavior(GO:2000253)
0.0	0.2	GO:1990573	potassium ion import across plasma membrane(GO:1990573)
0.0	0.1	GO:0015705	iodide transport(GO:0015705)
0.0	2.3	GO:0045333	cellular respiration(GO:0045333)
0.0	0.4	GO:0042462	eye photoreceptor cell development(GO:0042462)
0.0	1.1	GO:0006521	regulation of cellular amino acid metabolic process(GO:0006521)
0.0	2.4	GO:0008360	regulation of cell shape(GO:0008360)

Gene overrepresentation in C2:CP category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	1.3	PID ANTHRAX PATHWAY	Cellular roles of Anthrax toxin
0.0	2.3	PID INTEGRIN2 PATHWAY	Beta2 integrin cell surface interactions
0.0	4.0	ST T CELL SIGNAL TRANSDUCTION	T Cell Signal Transduction
0.0	0.9	PID P38 MKK3 6PATHWAY	p38 MAPK signaling pathway
0.0	2.2	PID RHOA REG PATHWAY	Regulation of RhoA activity
0.0	1.5	PID CXCR3 PATHWAY	CXCR3-mediated signaling events
0.0	1.8	PID IL4 2PATHWAY	IL4-mediated signaling events
0.0	1.9	PID E2F PATHWAY	E2F transcription factor network
0.0	0.9	PID NOTCH PATHWAY	Notch signaling pathway
0.0	0.6	PID HEDGEHOG GLI PATHWAY	Hedgehog signaling events mediated by Gli proteins
0.0	0.3	ST MYOCYTE AD PATHWAY	Myocyte Adrenergic Pathway is a specific case of the generalized Adrenergic Pathway.
0.0	0.2	ST WNT CA2 CYCLIC GMP PATHWAY	Wnt/Ca2+/cyclic GMP signaling.

Gene overrepresentation in cellular_component category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.4	1.9	GO:0097179	protease inhibitor complex(GO:0097179)
0.3	1.4	GO:1990423	RZZ complex(GO:1990423)
0.2	0.7	GO:0005968	Rab-protein geranylgeranyltransferase complex(GO:0005968)
0.1	1.1	GO:1990111	spermatoproteasome complex(GO:1990111)
0.1	1.6	GO:0032045	guanyl-nucleotide exchange factor complex(GO:0032045)
0.1	1.0	GO:0097504	Gemini of coiled bodies(GO:0097504)
0.1	1.8	GO:0005833	hemoglobin complex(GO:0005833)
0.1	1.3	GO:0033093	Weibel-Palade body(GO:0033093)
0.1	0.4	GO:0071817	MMXD complex(GO:0071817)
0.1	0.1	GO:0097679	other organism cytoplasm(GO:0097679)
0.1	0.3	GO:0030430	host cell cytoplasm(GO:0030430) host cell cytoplasm part(GO:0033655)
0.1	0.2	GO:0008282	ATP-sensitive potassium channel complex(GO:0008282)
0.1	0.6	GO:0016013	syntrophin complex(GO:0016013)
0.1	0.4	GO:0033269	internode region of axon(GO:0033269)
0.1	1.3	GO:0042613	MHC class II protein complex(GO:0042613)
0.1	1.5	GO:0000178	exosome (RNase complex)(GO:0000178)
0.1	0.5	GO:0033588	Elongator holoenzyme complex(GO:0033588)
0.1	0.3	GO:0070436	Grb2-EGFR complex(GO:0070436)
0.0	0.2	GO:0000798	nuclear cohesin complex(GO:0000798)
0.0	0.7	GO:0000276	mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)(GO:0000276)
0.0	0.3	GO:0005827	polar microtubule(GO:0005827)
0.0	0.3	GO:0030688	preribosome, small subunit precursor(GO:0030688)
0.0	0.3	GO:0070081	clathrin-sculpted monoamine transport vesicle(GO:0070081) clathrin-sculpted monoamine transport vesicle membrane(GO:0070083)
0.0	3.2	GO:0001650	fibrillar center(GO:0001650)
0.0	0.1	GO:0072536	interleukin-23 receptor complex(GO:0072536)
0.0	0.2	GO:0005610	laminin-5 complex(GO:0005610)
0.0	0.2	GO:0045009	melanosome membrane(GO:0033162) chitosome(GO:0045009)
0.0	0.3	GO:0005885	Arp2/3 protein complex(GO:0005885)
0.0	0.3	GO:0090533	cation-transporting ATPase complex(GO:0090533)
0.0	0.6	GO:0019005	SCF ubiquitin ligase complex(GO:0019005)
0.0	0.1	GO:0030056	hemidesmosome(GO:0030056)
0.0	1.1	GO:0035578	azurophil granule lumen(GO:0035578)
0.0	0.1	GO:0097427	microtubule bundle(GO:0097427)
0.0	3.6	GO:0009897	external side of plasma membrane(GO:0009897)