ENCODE cell lines, expression (Ernst 2011)

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Download the whole report

Gene Symbol	Gene ID	Gene Info
NKX6-3 Links Ensembl NCBI GeneCards UniProt	ENSG00000165066.11	NKX6-3

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Promoter	Score	Transcript	Gene	Gene Info
chr17_-_64225508	1.14	ENST00000205948.6	APOH	apolipoprotein H (beta-2-glycoprotein I)
chr18_+_32558208	0.97	ENST00000436190.2	MAPRE2	microtubule-associated protein, RP/EB family, member 2
chr11_+_22689648	0.85	ENST00000278187.3	GAS2	growth arrest-specific 2
chr7_+_138145076	0.84	ENST00000343526.4	TRIM24	tripartite motif containing 24
chrX_-_130423200	0.59	ENST00000361420.3	IGSF1	immunoglobulin superfamily, member 1
chr20_-_33735070	0.57	ENST00000374491.3 ENST00000542871.1 ENST00000374492.3	EDEM2	ER degradation enhancer, mannosidase alpha-like 2
chr4_+_80584903	0.53	ENST00000506460.1	RP11-452C8.1	RP11-452C8.1
chr1_-_151431647	0.46	ENST00000368863.2 ENST00000409503.1 ENST00000491586.1 ENST00000533351.1 ENST00000540984.1	POGZ	pogo transposable element with ZNF domain
chr1_-_151431909	0.42	ENST00000361398.3 ENST00000271715.2	POGZ	pogo transposable element with ZNF domain
chrX_+_43515467	0.36	ENST00000338702.3 ENST00000542639.1	MAOA	monoamine oxidase A
chr20_+_30697298	0.35	ENST00000398022.2	TM9SF4	transmembrane 9 superfamily protein member 4
chr3_-_141747950	0.32	ENST00000497579.1	TFDP2	transcription factor Dp-2 (E2F dimerization partner 2)
chr7_-_25268104	0.32	ENST00000222674.2	NPVF	neuropeptide VF precursor
chr19_+_50016610	0.21	ENST00000596975.1	FCGRT	Fc fragment of IgG, receptor, transporter, alpha
chr15_+_93443419	0.19	ENST00000557381.1 ENST00000420239.2	CHD2	chromodomain helicase DNA binding protein 2
chr16_-_67517716	0.18	ENST00000290953.2	AGRP	agouti related protein homolog (mouse)
chr2_+_234826016	0.18	ENST00000324695.4 ENST00000433712.2	TRPM8	transient receptor potential cation channel, subfamily M, member 8
chrX_-_110655306	0.17	ENST00000371993.2	DCX	doublecortin
chr5_-_58295712	0.15	ENST00000317118.8	PDE4D	phosphodiesterase 4D, cAMP-specific
chr17_-_10372875	0.14	ENST00000255381.2	MYH4	myosin, heavy chain 4, skeletal muscle
chrX_+_107288197	0.12	ENST00000415430.3	VSIG1	V-set and immunoglobulin domain containing 1
chr11_-_13517565	0.11	ENST00000282091.1 ENST00000529816.1	PTH	parathyroid hormone
chr14_-_51027838	0.10	ENST00000555216.1	MAP4K5	mitogen-activated protein kinase kinase kinase kinase 5
chr12_-_52761262	0.09	ENST00000257901.3	KRT85	keratin 85
chr8_-_90769422	0.08	ENST00000524190.1 ENST00000523859.1	RP11-37B2.1	RP11-37B2.1
chr4_-_123542224	0.07	ENST00000264497.3	IL21	interleukin 21
chr19_+_4402659	0.07	ENST00000301280.5 ENST00000585854.1	CHAF1A	chromatin assembly factor 1, subunit A (p150)
chrX_+_107288239	0.07	ENST00000217957.5	VSIG1	V-set and immunoglobulin domain containing 1
chr3_+_138340049	0.05	ENST00000464668.1	FAIM	Fas apoptotic inhibitory molecule
chr8_+_77593448	0.05	ENST00000521891.2	ZFHX4	zinc finger homeobox 4
chr10_+_18549645	0.04	ENST00000396576.2	CACNB2	calcium channel, voltage-dependent, beta 2 subunit
chrX_+_47696275	0.03	ENST00000376954.1 ENST00000338637.7	ZNF81	zinc finger protein 81
chr3_+_136649311	0.00	ENST00000469404.1 ENST00000467911.1	NCK1	NCK adaptor protein 1

Gene overrepresentation in cellular_component category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.2	0.8	GO:0005726	perichromatin fibrils(GO:0005726)
0.1	1.1	GO:0031089	platelet dense granule lumen(GO:0031089)
0.0	1.0	GO:0035371	microtubule plus-end(GO:0035371)
0.0	0.1	GO:0033186	CAF-1 complex(GO:0033186)
0.0	0.6	GO:0044322	endoplasmic reticulum quality control compartment(GO:0044322)

Gene overrepresentation in C2:CP:REACTOME category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.6	REACTOME CALNEXIN CALRETICULIN CYCLE	Genes involved in Calnexin/calreticulin cycle
0.0	0.8	REACTOME CASPASE MEDIATED CLEAVAGE OF CYTOSKELETAL PROTEINS	Genes involved in Caspase-mediated cleavage of cytoskeletal proteins
0.0	0.8	REACTOME SIGNALING BY FGFR1 FUSION MUTANTS	Genes involved in Signaling by FGFR1 fusion mutants
0.0	0.4	REACTOME NOREPINEPHRINE NEUROTRANSMITTER RELEASE CYCLE	Genes involved in Norepinephrine Neurotransmitter Release Cycle

Gene overrepresentation in molecular_function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.2	1.1	GO:0060230	lipoprotein lipase activator activity(GO:0060230)
0.1	0.8	GO:0034056	estrogen response element binding(GO:0034056)
0.1	0.6	GO:0034711	inhibin binding(GO:0034711)
0.1	0.2	GO:0019770	IgG receptor activity(GO:0019770)
0.1	0.6	GO:0004571	mannosyl-oligosaccharide 1,2-alpha-mannosidase activity(GO:0004571)
0.0	0.4	GO:0008131	primary amine oxidase activity(GO:0008131)
0.0	0.1	GO:0005134	interleukin-2 receptor binding(GO:0005134)

Gene overrepresentation in biological_process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.2	0.6	GO:0036512	trimming of terminal mannose on B branch(GO:0036509) trimming of first mannose on A branch(GO:0036511) trimming of second mannose on A branch(GO:0036512)
0.1	0.8	GO:0070562	regulation of vitamin D receptor signaling pathway(GO:0070562)
0.1	1.1	GO:0051918	negative regulation of fibrinolysis(GO:0051918)
0.1	0.9	GO:0051382	kinetochore assembly(GO:0051382)
0.0	0.2	GO:2000253	positive regulation of feeding behavior(GO:2000253)
0.0	0.1	GO:0090290	positive regulation of osteoclast proliferation(GO:0090290) negative regulation of bone mineralization involved in bone maturation(GO:1900158)
0.0	0.2	GO:0050955	thermoception(GO:0050955)
0.0	0.3	GO:0032277	negative regulation of gonadotropin secretion(GO:0032277)
0.0	0.3	GO:0070863	positive regulation of protein exit from endoplasmic reticulum(GO:0070863)
0.0	0.2	GO:0002414	immunoglobulin transcytosis in epithelial cells(GO:0002414)
0.0	0.4	GO:0042420	dopamine catabolic process(GO:0042420)
0.0	0.2	GO:0086024	adrenergic receptor signaling pathway involved in positive regulation of heart rate(GO:0086024)