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ENCODE cell lines, expression (Ernst 2011)

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Results for UAAGACG

Z-value: 0.26

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miRNA associated with seed UAAGACG

NamemiRBASE accession
hsa-miR-208a-3p
MIMAT0000241
hsa-miR-208b-3p
MIMAT0004960

Activity profile of UAAGACG motif

Sorted Z-values of UAAGACG motif

Network of associatons between targets according to the STRING database.

First level regulatory network of UAAGACG

PNG image of the network

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Top targets:

Promoter Score Transcript Gene Gene Info
chr8_+_38614807 0.40 ENST00000330691.6
ENST00000348567.4
 TACC1
 transforming, acidic coiled-coil containing protein 1
chr10_+_11206925 0.29 ENST00000354440.2
ENST00000315874.4
ENST00000427450.1
 CELF2
 CUGBP, Elav-like family member 2
chr7_-_120498357 0.22 ENST00000415871.1
ENST00000222747.3
ENST00000430985.1
 TSPAN12
 tetraspanin 12
chr19_-_7293942 0.22 ENST00000341500.5
ENST00000302850.5
 INSR
 insulin receptor
chr1_-_154842741 0.19 ENST00000271915.4
 KCNN3
 potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3
chr10_+_112631547 0.18 ENST00000280154.7
ENST00000393104.2
 PDCD4
 programmed cell death 4 (neoplastic transformation inhibitor)
chr8_+_56014949 0.16 ENST00000327381.6
 XKR4
 XK, Kell blood group complex subunit-related family, member 4
chr12_-_92539614 0.13 ENST00000256015.3
 BTG1
 B-cell translocation gene 1, anti-proliferative
chr3_-_15374033 0.13 ENST00000253688.5
ENST00000383791.3
 SH3BP5
 SH3-domain binding protein 5 (BTK-associated)
chr16_-_46655538 0.13 ENST00000303383.3
 SHCBP1
 SHC SH2-domain binding protein 1
chr3_+_186501336 0.12 ENST00000323963.5
ENST00000440191.2
ENST00000356531.5
 EIF4A2
 eukaryotic translation initiation factor 4A2
chr17_+_58677539 0.12 ENST00000305921.3
 PPM1D
 protein phosphatase, Mg2+/Mn2+ dependent, 1D
chr6_-_99797522 0.12 ENST00000389677.5
 FAXC
 failed axon connections homolog (Drosophila)
chr7_+_90225796 0.10 ENST00000380050.3
 CDK14
 cyclin-dependent kinase 14
chr3_+_43328004 0.09 ENST00000454177.1
ENST00000429705.2
ENST00000296088.7
ENST00000437827.1
 SNRK
 SNF related kinase
chr1_+_145611010 0.09 ENST00000369291.5
 RNF115
 ring finger protein 115
chr2_+_42396472 0.09 ENST00000318522.5
ENST00000402711.2
 EML4
 echinoderm microtubule associated protein like 4
chr1_+_97187318 0.08 ENST00000609116.1
ENST00000370198.1
ENST00000370197.1
ENST00000426398.2
ENST00000394184.3
 PTBP2
 polypyrimidine tract binding protein 2
chr10_+_63661053 0.07 ENST00000279873.7
 ARID5B
 AT rich interactive domain 5B (MRF1-like)
chr5_-_76788317 0.07 ENST00000296679.4
 WDR41
 WD repeat domain 41
chr2_+_228029281 0.07 ENST00000396578.3
 COL4A3
 collagen, type IV, alpha 3 (Goodpasture antigen)
chr17_-_45266542 0.07 ENST00000531206.1
ENST00000527547.1
ENST00000446365.2
ENST00000575483.1
ENST00000066544.3
 CDC27
 cell division cycle 27
chr7_-_44924939 0.07 ENST00000395699.2
 PURB
 purine-rich element binding protein B
chr7_-_30029367 0.07 ENST00000242059.5
 SCRN1
 secernin 1
chr10_-_27149792 0.07 ENST00000376140.3
ENST00000376170.4
 ABI1
 abl-interactor 1
chr1_-_16678914 0.07 ENST00000375592.3
 FBXO42
 F-box protein 42
chr15_-_49338748 0.07 ENST00000559471.1
 SECISBP2L
 SECIS binding protein 2-like
chr3_-_72496035 0.07 ENST00000477973.2
 RYBP
 RING1 and YY1 binding protein
chr6_+_21593972 0.06 ENST00000244745.1
ENST00000543472.1
 SOX4
 SRY (sex determining region Y)-box 4
chr5_+_122110691 0.06 ENST00000379516.2
ENST00000505934.1
ENST00000514949.1
 SNX2
 sorting nexin 2
chr14_-_50698276 0.06 ENST00000216373.5
 SOS2
 son of sevenless homolog 2 (Drosophila)
chr17_+_66508537 0.06 ENST00000392711.1
ENST00000585427.1
ENST00000589228.1
ENST00000536854.2
ENST00000588702.1
ENST00000589309.1
 PRKAR1A
 protein kinase, cAMP-dependent, regulatory, type I, alpha
chr1_+_50574585 0.05 ENST00000371824.1
ENST00000371823.4
 ELAVL4
 ELAV like neuron-specific RNA binding protein 4
chr8_+_58907104 0.05 ENST00000361488.3
 FAM110B
 family with sequence similarity 110, member B
chr2_+_120517174 0.05 ENST00000263708.2
 PTPN4
 protein tyrosine phosphatase, non-receptor type 4 (megakaryocyte)
chr12_+_68042495 0.05 ENST00000344096.3
 DYRK2
 dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2
chr8_+_42752053 0.05 ENST00000307602.4
 HOOK3
 hook microtubule-tethering protein 3
chr2_-_86564776 0.05 ENST00000165698.5
ENST00000541910.1
ENST00000535845.1
 REEP1
 receptor accessory protein 1
chr12_+_72148614 0.05 ENST00000261263.3
 RAB21
 RAB21, member RAS oncogene family
chr6_+_72596604 0.05 ENST00000348717.5
ENST00000517960.1
ENST00000518273.1
ENST00000522291.1
ENST00000521978.1
ENST00000520567.1
ENST00000264839.7
 RIMS1
 regulating synaptic membrane exocytosis 1
chr6_+_36646435 0.05 ENST00000244741.5
ENST00000405375.1
ENST00000373711.2
 CDKN1A
 cyclin-dependent kinase inhibitor 1A (p21, Cip1)
chr1_-_55680762 0.04 ENST00000407756.1
ENST00000294383.6
 USP24
 ubiquitin specific peptidase 24
chrY_+_15016725 0.04 ENST00000336079.3
 DDX3Y
 DEAD (Asp-Glu-Ala-Asp) box helicase 3, Y-linked
chr5_+_161274685 0.04 ENST00000428797.2
 GABRA1
 gamma-aminobutyric acid (GABA) A receptor, alpha 1
chr2_-_68290106 0.04 ENST00000407324.1
ENST00000355848.3
ENST00000409302.1
ENST00000410067.3
 C1D
 C1D nuclear receptor corepressor
chr5_-_114880533 0.04 ENST00000274457.3
 FEM1C
 fem-1 homolog c (C. elegans)
chr9_+_82186872 0.04 ENST00000376544.3
ENST00000376520.4
 TLE4
 transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila)
chr7_-_139876812 0.03 ENST00000397560.2
 JHDM1D
 lysine (K)-specific demethylase 7A
chrX_+_41192595 0.03 ENST00000399959.2
 DDX3X
 DEAD (Asp-Glu-Ala-Asp) box helicase 3, X-linked
chr7_+_65338230 0.03 ENST00000360768.3
 VKORC1L1
 vitamin K epoxide reductase complex, subunit 1-like 1
chr12_-_12419703 0.03 ENST00000543091.1
ENST00000261349.4
 LRP6
 low density lipoprotein receptor-related protein 6
chr15_+_57210818 0.03 ENST00000438423.2
ENST00000267811.5
ENST00000452095.2
ENST00000559609.1
ENST00000333725.5
 TCF12
 transcription factor 12
chr13_+_50571155 0.03 ENST00000420995.2
ENST00000378182.3
ENST00000356017.4
ENST00000457662.2
 TRIM13
 tripartite motif containing 13
chr17_+_29718642 0.03 ENST00000325874.8
 RAB11FIP4
 RAB11 family interacting protein 4 (class II)
chr9_-_19786926 0.03 ENST00000341998.2
ENST00000286344.3
 SLC24A2
 solute carrier family 24 (sodium/potassium/calcium exchanger), member 2
chr3_+_29322803 0.03 ENST00000396583.3
ENST00000383767.2
 RBMS3
 RNA binding motif, single stranded interacting protein 3
chr4_-_100871506 0.03 ENST00000296417.5
 H2AFZ
 H2A histone family, member Z
chr1_-_39339777 0.03 ENST00000397572.2
 MYCBP
 MYC binding protein
chr15_+_101142722 0.03 ENST00000332783.7
ENST00000558747.1
ENST00000343276.4
 ASB7
 ankyrin repeat and SOCS box containing 7
chr11_-_86666427 0.02 ENST00000531380.1
 FZD4
 frizzled family receptor 4
chr8_-_89339705 0.02 ENST00000286614.6
 MMP16
 matrix metallopeptidase 16 (membrane-inserted)
chr14_-_21737610 0.02 ENST00000320084.7
ENST00000449098.1
ENST00000336053.6
 HNRNPC
 heterogeneous nuclear ribonucleoprotein C (C1/C2)
chr14_+_105781048 0.02 ENST00000458164.2
ENST00000447393.1
 PACS2
 phosphofurin acidic cluster sorting protein 2
chrX_+_136648297 0.02 ENST00000287538.5
 ZIC3
 Zic family member 3
chr7_-_26240357 0.02 ENST00000354667.4
ENST00000356674.7
 HNRNPA2B1
 heterogeneous nuclear ribonucleoprotein A2/B1
chr1_-_39347255 0.02 ENST00000454994.2
ENST00000357771.3
 GJA9
 gap junction protein, alpha 9, 59kDa
chrX_+_16737718 0.02 ENST00000380155.3
 SYAP1
 synapse associated protein 1
chr7_+_138916231 0.02 ENST00000473989.3
ENST00000288561.8
 UBN2
 ubinuclein 2
chr2_+_176981307 0.02 ENST00000249501.4
 HOXD10
 homeobox D10
chr1_-_21113105 0.02 ENST00000375000.1
ENST00000419490.1
ENST00000414993.1
ENST00000443615.1
ENST00000312239.5
 HP1BP3
 heterochromatin protein 1, binding protein 3
chr8_+_11561660 0.01 ENST00000526716.1
ENST00000335135.4
ENST00000528027.1
 GATA4
 GATA binding protein 4
chr12_-_42538657 0.01 ENST00000398675.3
 GXYLT1
 glucoside xylosyltransferase 1
chr9_-_23821273 0.01 ENST00000380110.4
 ELAVL2
 ELAV like neuron-specific RNA binding protein 2
chr4_-_66536057 0.01 ENST00000273854.3
 EPHA5
 EPH receptor A5
chr6_+_37225540 0.01 ENST00000373491.3
 TBC1D22B
 TBC1 domain family, member 22B
chr4_+_139936905 0.01 ENST00000280614.2
 CCRN4L
 CCR4 carbon catabolite repression 4-like (S. cerevisiae)
chr17_-_48785216 0.01 ENST00000285243.6
 ANKRD40
 ankyrin repeat domain 40
chr15_+_44829255 0.01 ENST00000261868.5
ENST00000424492.3
 EIF3J
 eukaryotic translation initiation factor 3, subunit J
chr13_+_49550015 0.01 ENST00000492622.2
 FNDC3A
 fibronectin type III domain containing 3A
chr3_-_15563229 0.01 ENST00000383786.5
ENST00000383787.2
ENST00000383785.2
ENST00000383788.5
ENST00000603808.1
 COLQ
 collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase
chr1_+_36396677 0.01 ENST00000373191.4
ENST00000397828.2
 AGO3
 argonaute RISC catalytic component 3
chr7_+_155089486 0.01 ENST00000340368.4
ENST00000344756.4
ENST00000425172.1
ENST00000342407.5
 INSIG1
 insulin induced gene 1
chr6_+_163835669 0.01 ENST00000453779.2
ENST00000275262.7
ENST00000392127.2
ENST00000361752.3
 QKI
 QKI, KH domain containing, RNA binding
chr13_-_50367057 0.01 ENST00000261667.3
 KPNA3
 karyopherin alpha 3 (importin alpha 4)
chr1_+_43148059 0.01 ENST00000321358.7
ENST00000332220.6
 YBX1
 Y box binding protein 1
chr6_+_133562472 0.00 ENST00000430974.2
ENST00000367895.5
ENST00000355167.3
ENST00000355286.6
 EYA4
 eyes absent homolog 4 (Drosophila)
chr6_-_166075557 0.00 ENST00000539869.2
ENST00000366882.1
 PDE10A
 phosphodiesterase 10A
chr1_+_110527308 0.00 ENST00000369799.5
 AHCYL1
 adenosylhomocysteinase-like 1
chr2_+_176987088 0.00 ENST00000249499.6
 HOXD9
 homeobox D9
chr6_-_13711773 0.00 ENST00000011619.3
 RANBP9
 RAN binding protein 9
chr9_-_16870704 0.00 ENST00000380672.4
ENST00000380667.2
ENST00000380666.2
ENST00000486514.1
 BNC2
 basonuclin 2
chr3_+_89156674 0.00 ENST00000336596.2
 EPHA3
 EPH receptor A3
chr5_+_112043186 0.00 ENST00000509732.1
ENST00000457016.1
ENST00000507379.1
 APC
 adenomatous polyposis coli
chr2_-_174830430 0.00 ENST00000310015.6
ENST00000455789.2
 SP3
 Sp3 transcription factor
chr7_-_105029329 0.00 ENST00000393651.3
ENST00000460391.1
 SRPK2
 SRSF protein kinase 2
chr14_-_105487381 0.00 ENST00000392590.3
ENST00000336219.3
 CDCA4
 cell division cycle associated 4

Gene Ontology Analysis

Gene overrepresentation in C2:CP:REACTOME category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.2 REACTOME SIGNAL ATTENUATION Genes involved in Signal attenuation

Gene overrepresentation in cellular_component category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.2 GO:0005899 insulin receptor complex(GO:0005899)
0.0 0.1 GO:0000308 cytoplasmic cyclin-dependent protein kinase holoenzyme complex(GO:0000308)
0.0 0.0 GO:0070557 PCNA-p21 complex(GO:0070557)
0.0 0.0 GO:0070695 FHF complex(GO:0070695)
0.0 0.1 GO:1990316 ATG1/ULK1 kinase complex(GO:1990316)

Gene overrepresentation in molecular_function category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.2 GO:0016286 small conductance calcium-activated potassium channel activity(GO:0016286)
0.0 0.2 GO:0043559 insulin binding(GO:0043559)
0.0 0.0 GO:0019912 cyclin-dependent protein kinase activating kinase activity(GO:0019912)
0.0 0.3 GO:0042813 Wnt-activated receptor activity(GO:0042813)
0.0 0.1 GO:1990460 leptin receptor binding(GO:1990460)
0.0 0.1 GO:0035368 selenocysteine insertion sequence binding(GO:0035368)

Gene overrepresentation in biological_process category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.2 GO:0060940 epithelial to mesenchymal transition involved in cardiac fibroblast development(GO:0060940) negative regulation of vascular smooth muscle cell differentiation(GO:1905064)
0.1 0.2 GO:1990535 transformation of host cell by virus(GO:0019087) neuron projection maintenance(GO:1990535)
0.0 0.1 GO:0035910 ascending aorta development(GO:0035905) ascending aorta morphogenesis(GO:0035910)
0.0 0.0 GO:0060535 trachea cartilage morphogenesis(GO:0060535)
0.0 0.0 GO:0060574 intestinal epithelial cell maturation(GO:0060574)
0.0 0.0 GO:0022027 interkinetic nuclear migration(GO:0022027)
0.0 0.1 GO:2000271 positive regulation of fibroblast apoptotic process(GO:2000271)
0.0 0.1 GO:0051534 negative regulation of NFAT protein import into nucleus(GO:0051534)