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ENCODE cell lines, expression (Ernst 2011)

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Results for UGCAGUC

Z-value: 0.30

Motif logo

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miRNA associated with seed UGCAGUC

NamemiRBASE accession
hsa-miR-455-3p.2

Activity profile of UGCAGUC motif

Sorted Z-values of UGCAGUC motif

Network of associatons between targets according to the STRING database.

First level regulatory network of UGCAGUC

PNG image of the network

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Top targets:

Promoter Score Transcript Gene Gene Info
chr6_-_119670919 0.27 ENST00000368468.3
 MAN1A1
 mannosidase, alpha, class 1A, member 1
chr4_-_73434498 0.23 ENST00000286657.4
 ADAMTS3
 ADAM metallopeptidase with thrombospondin type 1 motif, 3
chr1_+_39456895 0.20 ENST00000432648.3
ENST00000446189.2
ENST00000372984.4
 AKIRIN1
 akirin 1
chr18_+_55102917 0.19 ENST00000491143.2
 ONECUT2
 one cut homeobox 2
chr12_-_48398104 0.17 ENST00000337299.6
ENST00000380518.3
 COL2A1
 collagen, type II, alpha 1
chr20_-_14318248 0.17 ENST00000378053.3
ENST00000341420.4
 FLRT3
 fibronectin leucine rich transmembrane protein 3
chr10_+_88516396 0.16 ENST00000372037.3
 BMPR1A
 bone morphogenetic protein receptor, type IA
chr2_-_11484710 0.15 ENST00000315872.6
 ROCK2
 Rho-associated, coiled-coil containing protein kinase 2
chr5_+_167718604 0.14 ENST00000265293.4
 WWC1
 WW and C2 domain containing 1
chr11_-_70507901 0.14 ENST00000449833.2
ENST00000357171.3
ENST00000449116.2
 SHANK2
 SH3 and multiple ankyrin repeat domains 2
chr10_-_62149433 0.14 ENST00000280772.2
 ANK3
 ankyrin 3, node of Ranvier (ankyrin G)
chr10_+_48189612 0.13 ENST00000453919.1
 AGAP9
 ArfGAP with GTPase domain, ankyrin repeat and PH domain 9
chr1_+_11751748 0.13 ENST00000294485.5
 DRAXIN
 dorsal inhibitory axon guidance protein
chr16_-_73082274 0.12 ENST00000268489.5
 ZFHX3
 zinc finger homeobox 3
chr19_+_35759824 0.12 ENST00000343550.5
 USF2
 upstream transcription factor 2, c-fos interacting
chr2_-_148778258 0.11 ENST00000392857.5
ENST00000457954.1
ENST00000392858.1
ENST00000542387.1
 ORC4
 origin recognition complex, subunit 4
chr11_+_125496124 0.10 ENST00000533778.2
ENST00000534070.1
 CHEK1
 checkpoint kinase 1
chr21_+_22370608 0.10 ENST00000400546.1
 NCAM2
 neural cell adhesion molecule 2
chr6_-_16761678 0.10 ENST00000244769.4
ENST00000436367.1
 ATXN1
 ataxin 1
chr16_-_56459354 0.10 ENST00000290649.5
 AMFR
 autocrine motility factor receptor, E3 ubiquitin protein ligase
chr6_+_161412759 0.10 ENST00000366919.2
ENST00000392142.4
ENST00000366920.2
ENST00000348824.7
 MAP3K4
 mitogen-activated protein kinase kinase kinase 4
chr10_-_47213626 0.10 ENST00000452145.2
 AGAP10
 ArfGAP with GTPase domain, ankyrin repeat and PH domain 10
chr2_-_2334888 0.09 ENST00000428368.2
ENST00000399161.2
 MYT1L
 myelin transcription factor 1-like
chr10_-_105615164 0.09 ENST00000355946.2
ENST00000369774.4
 SH3PXD2A
 SH3 and PX domains 2A
chr2_+_228336849 0.09 ENST00000409979.2
ENST00000310078.8
 AGFG1
 ArfGAP with FG repeats 1
chr6_-_30585009 0.09 ENST00000376511.2
 PPP1R10
 protein phosphatase 1, regulatory subunit 10
chr3_-_53880401 0.08 ENST00000315251.6
 CHDH
 choline dehydrogenase
chr4_-_99851766 0.08 ENST00000450253.2
 EIF4E
 eukaryotic translation initiation factor 4E
chr16_+_50187556 0.08 ENST00000561678.1
ENST00000357464.3
 PAPD5
 PAP associated domain containing 5
chr3_-_129407535 0.08 ENST00000432054.2
 TMCC1
 transmembrane and coiled-coil domain family 1
chr15_-_83316254 0.08 ENST00000567678.1
ENST00000450751.2
 CPEB1
 cytoplasmic polyadenylation element binding protein 1
chr12_+_62654119 0.08 ENST00000353364.3
ENST00000549523.1
ENST00000280377.5
 USP15
 ubiquitin specific peptidase 15
chr7_+_28452130 0.08 ENST00000357727.2
 CREB5
 cAMP responsive element binding protein 5
chr15_-_34628951 0.08 ENST00000397707.2
ENST00000560611.1
 SLC12A6
 solute carrier family 12 (potassium/chloride transporter), member 6
chr14_+_93651358 0.08 ENST00000415050.2
 TMEM251
 transmembrane protein 251
chr21_+_40177143 0.07 ENST00000360214.3
 ETS2
 v-ets avian erythroblastosis virus E26 oncogene homolog 2
chr1_+_167190066 0.07 ENST00000367866.2
ENST00000429375.2
ENST00000452019.1
ENST00000420254.3
ENST00000541643.3
 POU2F1
 POU class 2 homeobox 1
chr2_+_48010221 0.07 ENST00000234420.5
 MSH6
 mutS homolog 6
chr12_+_862089 0.07 ENST00000315939.6
ENST00000537687.1
ENST00000447667.2
 WNK1
 WNK lysine deficient protein kinase 1
chr2_+_118846008 0.07 ENST00000245787.4
 INSIG2
 insulin induced gene 2
chr1_+_87794150 0.07 ENST00000370544.5
 LMO4
 LIM domain only 4
chrX_-_110513703 0.07 ENST00000324068.1
 CAPN6
 calpain 6
chr1_+_36348790 0.06 ENST00000373204.4
 AGO1
 argonaute RISC catalytic component 1
chr14_+_103243813 0.06 ENST00000560371.1
ENST00000347662.4
ENST00000392745.2
ENST00000539721.1
ENST00000560463.1
 TRAF3
 TNF receptor-associated factor 3
chr16_-_12009735 0.06 ENST00000439887.2
ENST00000434724.2
 GSPT1
 G1 to S phase transition 1
chr19_-_46476791 0.06 ENST00000263257.5
 NOVA2
 neuro-oncological ventral antigen 2
chr11_-_134281812 0.06 ENST00000392580.1
ENST00000312527.4
 B3GAT1
 beta-1,3-glucuronyltransferase 1 (glucuronosyltransferase P)
chr11_-_72504637 0.06 ENST00000536377.1
ENST00000359373.5
 STARD10
ARAP1
 StAR-related lipid transfer (START) domain containing 10
ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1
chr10_-_94003003 0.06 ENST00000412050.4
 CPEB3
 cytoplasmic polyadenylation element binding protein 3
chr9_+_112403088 0.06 ENST00000448454.2
 PALM2
 paralemmin 2
chr12_+_110906169 0.06 ENST00000377673.5
 FAM216A
 family with sequence similarity 216, member A
chr20_+_62795827 0.05 ENST00000328439.1
ENST00000536311.1
 MYT1
 myelin transcription factor 1
chr5_+_122110691 0.05 ENST00000379516.2
ENST00000505934.1
ENST00000514949.1
 SNX2
 sorting nexin 2
chr2_+_191273052 0.05 ENST00000417958.1
ENST00000432036.1
ENST00000392328.1
 MFSD6
 major facilitator superfamily domain containing 6
chr15_+_33603147 0.05 ENST00000415757.3
ENST00000389232.4
 RYR3
 ryanodine receptor 3
chr19_-_12834739 0.05 ENST00000589337.1
ENST00000425528.1
ENST00000441499.1
ENST00000588216.1
 TNPO2
 transportin 2
chr9_-_37034028 0.05 ENST00000520281.1
ENST00000446742.1
ENST00000522003.1
ENST00000523145.1
ENST00000414447.1
ENST00000377847.2
ENST00000377853.2
ENST00000377852.2
ENST00000523241.1
ENST00000520154.1
ENST00000358127.4
 PAX5
 paired box 5
chr10_+_89622870 0.05 ENST00000371953.3
 PTEN
 phosphatase and tensin homolog
chr2_+_166326157 0.05 ENST00000421875.1
ENST00000314499.7
ENST00000409664.1
 CSRNP3
 cysteine-serine-rich nuclear protein 3
chr3_-_164913777 0.04 ENST00000475390.1
 SLITRK3
 SLIT and NTRK-like family, member 3
chr12_+_104850740 0.04 ENST00000547956.1
ENST00000549260.1
ENST00000303694.5
 CHST11
 carbohydrate (chondroitin 4) sulfotransferase 11
chr3_-_21792838 0.04 ENST00000281523.2
 ZNF385D
 zinc finger protein 385D
chr1_-_217262969 0.04 ENST00000361525.3
 ESRRG
 estrogen-related receptor gamma
chr7_+_101928380 0.04 ENST00000536178.1
 SH2B2
 SH2B adaptor protein 2
chr5_-_32444828 0.04 ENST00000265069.8
 ZFR
 zinc finger RNA binding protein
chr1_+_36396677 0.04 ENST00000373191.4
ENST00000397828.2
 AGO3
 argonaute RISC catalytic component 3
chr5_+_36876833 0.04 ENST00000282516.8
ENST00000448238.2
 NIPBL
 Nipped-B homolog (Drosophila)
chr11_+_33278811 0.04 ENST00000303296.4
ENST00000379016.3
 HIPK3
 homeodomain interacting protein kinase 3
chr3_+_137906109 0.04 ENST00000481646.1
ENST00000469044.1
ENST00000491704.1
ENST00000461600.1
 ARMC8
 armadillo repeat containing 8
chr1_+_233086326 0.04 ENST00000366628.5
ENST00000366627.4
 NTPCR
 nucleoside-triphosphatase, cancer-related
chr5_-_133561752 0.04 ENST00000519718.1
ENST00000481195.1
 CTD-2410N18.5
PPP2CA
 S-phase kinase-associated protein 1
protein phosphatase 2, catalytic subunit, alpha isozyme
chr12_-_16761007 0.03 ENST00000354662.1
ENST00000441439.2
 LMO3
 LIM domain only 3 (rhombotin-like 2)
chr17_-_38020392 0.03 ENST00000346872.3
ENST00000439167.2
ENST00000377945.3
ENST00000394189.2
ENST00000377944.3
ENST00000377958.2
ENST00000535189.1
ENST00000377952.2
 IKZF3
 IKAROS family zinc finger 3 (Aiolos)
chr16_-_46865047 0.03 ENST00000394806.2
 C16orf87
 chromosome 16 open reading frame 87
chr3_-_98620500 0.03 ENST00000326840.6
 DCBLD2
 discoidin, CUB and LCCL domain containing 2
chr20_+_3451650 0.03 ENST00000262919.5
 ATRN
 attractin
chr2_+_28974668 0.03 ENST00000296122.6
ENST00000395366.2
 PPP1CB
 protein phosphatase 1, catalytic subunit, beta isozyme
chr10_-_5855350 0.03 ENST00000456041.1
ENST00000380181.3
ENST00000418688.1
ENST00000380132.4
ENST00000609712.1
ENST00000380191.4
 GDI2
 GDP dissociation inhibitor 2
chr2_-_154335300 0.03 ENST00000325926.3
 RPRM
 reprimo, TP53 dependent G2 arrest mediator candidate
chr15_+_77287426 0.03 ENST00000558012.1
ENST00000267939.5
ENST00000379595.3
 PSTPIP1
 proline-serine-threonine phosphatase interacting protein 1
chr7_-_105517021 0.03 ENST00000318724.4
ENST00000419735.3
 ATXN7L1
 ataxin 7-like 1
chr7_+_119913688 0.03 ENST00000331113.4
 KCND2
 potassium voltage-gated channel, Shal-related subfamily, member 2
chrX_+_107683096 0.03 ENST00000328300.6
ENST00000361603.2
 COL4A5
 collagen, type IV, alpha 5
chr14_+_71108460 0.03 ENST00000256367.2
 TTC9
 tetratricopeptide repeat domain 9
chr7_+_94139105 0.03 ENST00000297273.4
 CASD1
 CAS1 domain containing 1
chr2_+_149632783 0.03 ENST00000435030.1
 KIF5C
 kinesin family member 5C
chr14_-_21737610 0.03 ENST00000320084.7
ENST00000449098.1
ENST00000336053.6
 HNRNPC
 heterogeneous nuclear ribonucleoprotein C (C1/C2)
chr1_-_53793584 0.02 ENST00000354412.3
ENST00000347547.2
ENST00000306052.6
 LRP8
 low density lipoprotein receptor-related protein 8, apolipoprotein e receptor
chr1_+_237205476 0.02 ENST00000366574.2
 RYR2
 ryanodine receptor 2 (cardiac)
chr7_-_32931387 0.02 ENST00000304056.4
 KBTBD2
 kelch repeat and BTB (POZ) domain containing 2
chr17_-_42580738 0.02 ENST00000585614.1
ENST00000591680.1
ENST00000434000.1
ENST00000588554.1
ENST00000592154.1
 GPATCH8
 G patch domain containing 8
chr2_+_46926048 0.02 ENST00000306503.5
 SOCS5
 suppressor of cytokine signaling 5
chr1_-_78444776 0.02 ENST00000370767.1
ENST00000421641.1
 FUBP1
 far upstream element (FUSE) binding protein 1
chr1_+_28052456 0.02 ENST00000373954.6
ENST00000419687.2
 FAM76A
 family with sequence similarity 76, member A
chr3_-_15106747 0.02 ENST00000449354.2
ENST00000444840.2
ENST00000253686.2
 MRPS25
 mitochondrial ribosomal protein S25
chr4_-_76598296 0.02 ENST00000395719.3
 G3BP2
 GTPase activating protein (SH3 domain) binding protein 2
chr5_+_149109825 0.02 ENST00000360453.4
ENST00000394320.3
ENST00000309241.5
 PPARGC1B
 peroxisome proliferator-activated receptor gamma, coactivator 1 beta
chr1_-_35658736 0.01 ENST00000357214.5
 SFPQ
 splicing factor proline/glutamine-rich
chr18_+_63418068 0.01 ENST00000397968.2
 CDH7
 cadherin 7, type 2
chr11_-_132813566 0.01 ENST00000331898.7
 OPCML
 opioid binding protein/cell adhesion molecule-like
chr2_+_204192942 0.01 ENST00000295851.5
ENST00000261017.5
 ABI2
 abl-interactor 2
chr14_+_94492674 0.01 ENST00000203664.5
ENST00000553723.1
 OTUB2
 OTU domain, ubiquitin aldehyde binding 2
chr4_-_42659102 0.01 ENST00000264449.10
ENST00000510289.1
ENST00000381668.5
 ATP8A1
 ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1
chr10_+_97803151 0.01 ENST00000403870.3
ENST00000265992.5
ENST00000465148.2
ENST00000534974.1
 CCNJ
 cyclin J
chr10_-_120514720 0.01 ENST00000369151.3
ENST00000340214.4
 CACUL1
 CDK2-associated, cullin domain 1
chr1_-_70671216 0.01 ENST00000370952.3
 LRRC40
 leucine rich repeat containing 40
chr3_+_121903181 0.01 ENST00000498619.1
 CASR
 calcium-sensing receptor
chr3_-_12200851 0.01 ENST00000287814.4
 TIMP4
 TIMP metallopeptidase inhibitor 4
chr1_+_171454659 0.01 ENST00000367742.3
ENST00000338920.4
 PRRC2C
 proline-rich coiled-coil 2C
chr17_-_73775839 0.01 ENST00000592643.1
ENST00000591890.1
ENST00000587171.1
ENST00000254810.4
ENST00000589599.1
 H3F3B
 H3 histone, family 3B (H3.3B)
chr2_-_69870835 0.01 ENST00000409085.4
ENST00000406297.3
 AAK1
 AP2 associated kinase 1
chr3_+_126707437 0.00 ENST00000393409.2
ENST00000251772.4
 PLXNA1
 plexin A1
chr14_-_55878538 0.00 ENST00000247178.5
 ATG14
 autophagy related 14
chr9_-_131790550 0.00 ENST00000372554.4
ENST00000372564.3
 SH3GLB2
 SH3-domain GRB2-like endophilin B2
chr6_+_142468361 0.00 ENST00000367630.4
 VTA1
 vesicle (multivesicular body) trafficking 1

Gene Ontology Analysis

Gene overrepresentation in molecular_function category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.2 GO:0042289 MHC class II protein binding(GO:0042289)
0.0 0.1 GO:1904288 BAT3 complex binding(GO:1904288)
0.0 0.2 GO:0098821 BMP receptor activity(GO:0098821)
0.0 0.3 GO:0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity(GO:0004571)
0.0 0.1 GO:0015018 galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity(GO:0015018)
0.0 0.1 GO:0034046 poly(G) binding(GO:0034046)
0.0 0.1 GO:0030160 GKAP/Homer scaffold activity(GO:0030160)
0.0 0.1 GO:0048763 calcium-induced calcium release activity(GO:0048763)
0.0 0.1 GO:0035402 histone kinase activity (H3-T11 specific)(GO:0035402)
0.0 0.1 GO:0032143 single thymine insertion binding(GO:0032143)
0.0 0.0 GO:0016314 phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity(GO:0016314)
0.0 0.1 GO:0016176 superoxide-generating NADPH oxidase activator activity(GO:0016176)
0.0 0.1 GO:0061649 ubiquitinated histone binding(GO:0061649)
0.0 0.0 GO:0098519 nucleotide phosphatase activity, acting on free nucleotides(GO:0098519)
0.0 0.1 GO:0003747 translation release factor activity(GO:0003747) translation termination factor activity(GO:0008079)
0.0 0.1 GO:1990460 leptin receptor binding(GO:1990460)
0.0 0.2 GO:0045499 chemorepellent activity(GO:0045499)
0.0 0.1 GO:0000340 RNA 7-methylguanosine cap binding(GO:0000340)
0.0 0.1 GO:0004652 polynucleotide adenylyltransferase activity(GO:0004652)
0.0 0.0 GO:0034481 chondroitin sulfotransferase activity(GO:0034481)

Gene overrepresentation in biological_process category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.2 GO:0048382 mesendoderm development(GO:0048382)
0.0 0.3 GO:1904381 Golgi apparatus mannose trimming(GO:1904381)
0.0 0.2 GO:1900748 positive regulation of vascular endothelial growth factor signaling pathway(GO:1900748)
0.0 0.1 GO:1903347 negative regulation of bicellular tight junction assembly(GO:1903347)
0.0 0.1 GO:0010650 positive regulation of cell communication by electrical coupling(GO:0010650) maintenance of protein location in membrane(GO:0072658) maintenance of protein location in plasma membrane(GO:0072660) positive regulation of membrane depolarization during cardiac muscle cell action potential(GO:1900827)
0.0 0.1 GO:1904059 regulation of locomotor rhythm(GO:1904059)
0.0 0.1 GO:0019086 regulation of transcription from RNA polymerase II promoter by glucose(GO:0000430) positive regulation of transcription from RNA polymerase II promoter by glucose(GO:0000432) late viral transcription(GO:0019086)
0.0 0.1 GO:0007538 primary sex determination(GO:0007538)
0.0 0.1 GO:0072674 multinuclear osteoclast differentiation(GO:0072674) osteoclast fusion(GO:0072675)
0.0 0.1 GO:0002184 cytoplasmic translational termination(GO:0002184)
0.0 0.1 GO:0090625 mRNA cleavage involved in gene silencing by miRNA(GO:0035279) mRNA cleavage involved in gene silencing by siRNA(GO:0090625) mRNA cleavage involved in gene silencing(GO:0098795)
0.0 0.1 GO:0035331 negative regulation of hippo signaling(GO:0035331)
0.0 0.1 GO:0035616 histone H2B conserved C-terminal lysine deubiquitination(GO:0035616)
0.0 0.1 GO:0045900 negative regulation of translational elongation(GO:0045900)
0.0 0.1 GO:0035407 histone H3-T11 phosphorylation(GO:0035407)
0.0 0.1 GO:0008063 Toll signaling pathway(GO:0008063)
0.0 0.2 GO:0060174 limb bud formation(GO:0060174)
0.0 0.1 GO:0042539 hypotonic salinity response(GO:0042539) cellular hypotonic salinity response(GO:0071477)
0.0 0.1 GO:0030037 actin filament reorganization involved in cell cycle(GO:0030037)
0.0 0.2 GO:0003344 pericardium morphogenesis(GO:0003344)
0.0 0.0 GO:0061010 gall bladder development(GO:0061010)
0.0 0.0 GO:1903984 positive regulation of TRAIL-activated apoptotic signaling pathway(GO:1903984)
0.0 0.1 GO:0042426 choline catabolic process(GO:0042426)
0.0 0.1 GO:0043634 polyadenylation-dependent ncRNA catabolic process(GO:0043634)
0.0 0.1 GO:0090009 ectodermal cell fate commitment(GO:0001712) primitive streak formation(GO:0090009)
0.0 0.1 GO:2000766 negative regulation of cytoplasmic translation(GO:2000766)
0.0 0.2 GO:0021516 dorsal spinal cord development(GO:0021516)
0.0 0.1 GO:0001675 acrosome assembly(GO:0001675)

Gene overrepresentation in cellular_component category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.1 GO:0018444 translation release factor complex(GO:0018444)
0.0 0.1 GO:0042272 nuclear RNA export factor complex(GO:0042272)
0.0 0.1 GO:0032301 MutSalpha complex(GO:0032301)
0.0 0.1 GO:0032937 SREBP-SCAP-Insig complex(GO:0032937)
0.0 0.2 GO:0005583 fibrillar collagen trimer(GO:0005583) banded collagen fibril(GO:0098643)
0.0 0.2 GO:1990712 HFE-transferrin receptor complex(GO:1990712)
0.0 0.1 GO:0072357 PTW/PP1 phosphatase complex(GO:0072357)
0.0 0.2 GO:0016442 RISC complex(GO:0016442) RNAi effector complex(GO:0031332)