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ENCODE cell lines, expression (Ernst 2011)

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Results for UGCAUUG

Z-value: 0.21

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miRNA associated with seed UGCAUUG

NamemiRBASE accession
hsa-miR-33a-5p
MIMAT0000091
hsa-miR-33b-5p
MIMAT0003301

Activity profile of UGCAUUG motif

Sorted Z-values of UGCAUUG motif

Network of associatons between targets according to the STRING database.

First level regulatory network of UGCAUUG

PNG image of the network

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Top targets:

Promoter Score Transcript Gene Gene Info
chr8_-_49833978 0.25 ENST00000020945.1
 SNAI2
 snail family zinc finger 2
chr10_+_63661053 0.22 ENST00000279873.7
 ARID5B
 AT rich interactive domain 5B (MRF1-like)
chr9_+_36036430 0.20 ENST00000377966.3
 RECK
 reversion-inducing-cysteine-rich protein with kazal motifs
chr1_-_20812690 0.20 ENST00000375078.3
 CAMK2N1
 calcium/calmodulin-dependent protein kinase II inhibitor 1
chr4_+_55095264 0.20 ENST00000257290.5
 PDGFRA
 platelet-derived growth factor receptor, alpha polypeptide
chr9_-_89562104 0.15 ENST00000298743.7
 GAS1
 growth arrest-specific 1
chr7_-_124405681 0.15 ENST00000303921.2
 GPR37
 G protein-coupled receptor 37 (endothelin receptor type B-like)
chr10_+_54074033 0.13 ENST00000373970.3
 DKK1
 dickkopf WNT signaling pathway inhibitor 1
chr7_-_83824169 0.13 ENST00000265362.4
 SEMA3A
 sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A
chr5_+_82767284 0.13 ENST00000265077.3
 VCAN
 versican
chr19_+_41725088 0.12 ENST00000301178.4
 AXL
 AXL receptor tyrosine kinase
chr7_-_19157248 0.11 ENST00000242261.5
 TWIST1
 twist family bHLH transcription factor 1
chr2_-_9143786 0.11 ENST00000462696.1
ENST00000305997.3
 MBOAT2
 membrane bound O-acyltransferase domain containing 2
chr15_+_89631381 0.10 ENST00000352732.5
 ABHD2
 abhydrolase domain containing 2
chr16_+_56672571 0.10 ENST00000290705.8
 MT1A
 metallothionein 1A
chr6_-_52441713 0.08 ENST00000182527.3
 TRAM2
 translocation associated membrane protein 2
chr2_+_46926048 0.08 ENST00000306503.5
 SOCS5
 suppressor of cytokine signaling 5
chr13_+_102104980 0.08 ENST00000545560.2
 ITGBL1
 integrin, beta-like 1 (with EGF-like repeat domains)
chr22_-_29075853 0.08 ENST00000397906.2
 TTC28
 tetratricopeptide repeat domain 28
chr16_-_4987065 0.07 ENST00000590782.2
ENST00000345988.2
 PPL
 periplakin
chr19_+_13135386 0.07 ENST00000360105.4
ENST00000588228.1
ENST00000591028.1
 NFIX
 nuclear factor I/X (CCAAT-binding transcription factor)
chr1_-_200379180 0.07 ENST00000294740.3
 ZNF281
 zinc finger protein 281
chr2_-_183903133 0.06 ENST00000361354.4
 NCKAP1
 NCK-associated protein 1
chr2_-_47168906 0.06 ENST00000444761.2
ENST00000409147.1
 MCFD2
 multiple coagulation factor deficiency 2
chr20_+_11871371 0.06 ENST00000254977.3
 BTBD3
 BTB (POZ) domain containing 3
chr16_+_69221028 0.06 ENST00000336278.4
 SNTB2
 syntrophin, beta 2 (dystrophin-associated protein A1, 59kDa, basic component 2)
chr3_-_149688896 0.06 ENST00000239940.7
 PFN2
 profilin 2
chr8_+_48920960 0.06 ENST00000523111.2
ENST00000523432.1
ENST00000521346.1
ENST00000517630.1
 UBE2V2
 ubiquitin-conjugating enzyme E2 variant 2
chr10_-_119134918 0.05 ENST00000334464.5
 PDZD8
 PDZ domain containing 8
chr1_+_2160134 0.05 ENST00000378536.4
 SKI
 v-ski avian sarcoma viral oncogene homolog
chr1_-_84464780 0.05 ENST00000260505.8
 TTLL7
 tubulin tyrosine ligase-like family, member 7
chr4_-_141348999 0.05 ENST00000325617.5
 CLGN
 calmegin
chr4_-_121993673 0.05 ENST00000379692.4
 NDNF
 neuron-derived neurotrophic factor
chr9_-_107690420 0.05 ENST00000423487.2
ENST00000374733.1
ENST00000374736.3
 ABCA1
 ATP-binding cassette, sub-family A (ABC1), member 1
chr3_-_45017609 0.04 ENST00000342790.4
ENST00000424952.2
ENST00000296127.3
ENST00000455235.1
 ZDHHC3
 zinc finger, DHHC-type containing 3
chr10_+_11206925 0.04 ENST00000354440.2
ENST00000315874.4
ENST00000427450.1
 CELF2
 CUGBP, Elav-like family member 2
chr10_+_75757863 0.04 ENST00000372755.3
ENST00000211998.4
ENST00000417648.2
 VCL
 vinculin
chr5_+_140227048 0.04 ENST00000532602.1
 PCDHA9
 protocadherin alpha 9
chr17_+_61086917 0.03 ENST00000424789.2
ENST00000389520.4
 TANC2
 tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2
chr5_+_65222299 0.03 ENST00000284037.5
 ERBB2IP
 erbb2 interacting protein
chr9_+_112810878 0.03 ENST00000434623.2
ENST00000374525.1
 AKAP2
 A kinase (PRKA) anchor protein 2
chr2_-_222436988 0.03 ENST00000409854.1
ENST00000281821.2
ENST00000392071.4
ENST00000443796.1
 EPHA4
 EPH receptor A4
chr7_+_35840542 0.03 ENST00000435235.1
ENST00000399034.2
ENST00000350320.6
ENST00000469679.2
 SEPT7
 septin 7
chr11_-_68609377 0.03 ENST00000265641.5
ENST00000376618.2
 CPT1A
 carnitine palmitoyltransferase 1A (liver)
chr1_-_109584608 0.03 ENST00000400794.3
ENST00000528747.1
ENST00000369962.3
ENST00000361054.3
 WDR47
 WD repeat domain 47
chr1_+_182992545 0.03 ENST00000258341.4
 LAMC1
 laminin, gamma 1 (formerly LAMB2)
chr17_+_44668035 0.03 ENST00000398238.4
ENST00000225282.8
 NSF
 N-ethylmaleimide-sensitive factor
chr14_+_55034599 0.03 ENST00000392067.3
ENST00000357634.3
 SAMD4A
 sterile alpha motif domain containing 4A
chr1_+_145611010 0.03 ENST00000369291.5
 RNF115
 ring finger protein 115
chr10_+_96162242 0.03 ENST00000225235.4
 TBC1D12
 TBC1 domain family, member 12
chr5_+_31193847 0.02 ENST00000514738.1
ENST00000265071.2
 CDH6
 cadherin 6, type 2, K-cadherin (fetal kidney)
chr2_-_122042770 0.02 ENST00000263707.5
 TFCP2L1
 transcription factor CP2-like 1
chr12_+_54332535 0.02 ENST00000243056.3
 HOXC13
 homeobox C13
chr5_-_133512683 0.02 ENST00000353411.6
 SKP1
 S-phase kinase-associated protein 1
chr11_-_790060 0.02 ENST00000330106.4
 CEND1
 cell cycle exit and neuronal differentiation 1
chr9_+_34990219 0.02 ENST00000541010.1
ENST00000454002.2
ENST00000545841.1
 DNAJB5
 DnaJ (Hsp40) homolog, subfamily B, member 5
chr11_-_111175739 0.02 ENST00000532918.1
 COLCA1
 colorectal cancer associated 1
chr8_+_106330920 0.02 ENST00000407775.2
 ZFPM2
 zinc finger protein, FOG family member 2
chr4_-_79860506 0.02 ENST00000295462.3
ENST00000380645.4
ENST00000512733.1
 PAQR3
 progestin and adipoQ receptor family member III
chr2_-_200322723 0.02 ENST00000417098.1
 SATB2
 SATB homeobox 2
chr8_-_93115445 0.02 ENST00000523629.1
 RUNX1T1
 runt-related transcription factor 1; translocated to, 1 (cyclin D-related)
chr7_+_43152191 0.02 ENST00000395891.2
 HECW1
 HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1
chr9_+_112542572 0.02 ENST00000374530.3
 PALM2-AKAP2
 PALM2-AKAP2 readthrough
chr20_+_43374421 0.02 ENST00000372861.3
 KCNK15
 potassium channel, subfamily K, member 15
chr5_+_155753745 0.02 ENST00000435422.3
ENST00000337851.4
ENST00000447401.1
 SGCD
 sarcoglycan, delta (35kDa dystrophin-associated glycoprotein)
chr3_+_150126101 0.02 ENST00000361875.3
ENST00000361136.2
 TSC22D2
 TSC22 domain family, member 2
chr2_-_37193606 0.02 ENST00000379213.2
ENST00000263918.4
 STRN
 striatin, calmodulin binding protein
chr5_+_140220769 0.02 ENST00000531613.1
ENST00000378123.3
 PCDHA8
 protocadherin alpha 8
chr16_-_53737795 0.02 ENST00000262135.4
ENST00000564374.1
ENST00000566096.1
 RPGRIP1L
 RPGRIP1-like
chr1_-_160254913 0.02 ENST00000440949.3
ENST00000368072.5
ENST00000608310.1
ENST00000556710.1
 PEX19
DCAF8
DCAF8
 peroxisomal biogenesis factor 19
DDB1 and CUL4 associated factor 8
DDB1- and CUL4-associated factor 8
chr5_+_140306478 0.02 ENST00000253807.2
 PCDHAC1
 protocadherin alpha subfamily C, 1
chr12_+_57984965 0.02 ENST00000540759.2
ENST00000551772.1
ENST00000550465.1
ENST00000354947.5
 PIP4K2C
 phosphatidylinositol-5-phosphate 4-kinase, type II, gamma
chr5_+_140248518 0.02 ENST00000398640.2
 PCDHA11
 protocadherin alpha 11
chr10_+_101088836 0.02 ENST00000356713.4
 CNNM1
 cyclin M1
chr17_-_1359443 0.02 ENST00000574295.1
ENST00000398970.5
ENST00000300574.2
 CRK
 v-crk avian sarcoma virus CT10 oncogene homolog
chr18_+_55018044 0.01 ENST00000324000.3
 ST8SIA3
 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3
chr1_-_38325256 0.01 ENST00000373036.4
 MTF1
 metal-regulatory transcription factor 1
chr5_+_42423872 0.01 ENST00000230882.4
ENST00000357703.3
 GHR
 growth hormone receptor
chr15_-_45815005 0.01 ENST00000261867.4
 SLC30A4
 solute carrier family 30 (zinc transporter), member 4
chr17_-_58469474 0.01 ENST00000300896.4
 USP32
 ubiquitin specific peptidase 32
chr14_+_57046500 0.01 ENST00000261556.6
 TMEM260
 transmembrane protein 260
chr2_-_99552620 0.01 ENST00000428096.1
ENST00000397899.2
ENST00000420294.1
 KIAA1211L
 KIAA1211-like
chr12_-_104532062 0.01 ENST00000240055.3
 NFYB
 nuclear transcription factor Y, beta
chr1_+_181452678 0.01 ENST00000367570.1
ENST00000526775.1
ENST00000357570.5
ENST00000358338.5
ENST00000367567.4
 CACNA1E
 calcium channel, voltage-dependent, R type, alpha 1E subunit
chr2_+_176981307 0.01 ENST00000249501.4
 HOXD10
 homeobox D10
chr17_-_38657849 0.01 ENST00000254051.6
 TNS4
 tensin 4
chr13_-_103053946 0.01 ENST00000376131.4
 FGF14
 fibroblast growth factor 14
chr8_+_64081118 0.01 ENST00000539294.1
 YTHDF3
 YTH domain family, member 3
chr6_+_101846664 0.01 ENST00000421544.1
ENST00000413795.1
ENST00000369138.1
ENST00000358361.3
 GRIK2
 glutamate receptor, ionotropic, kainate 2
chr1_-_93257951 0.01 ENST00000543509.1
ENST00000370331.1
ENST00000540033.1
 EVI5
 ecotropic viral integration site 5
chr5_+_74632993 0.01 ENST00000287936.4
 HMGCR
 3-hydroxy-3-methylglutaryl-CoA reductase
chr5_+_140165876 0.01 ENST00000504120.2
ENST00000394633.3
ENST00000378133.3
 PCDHA1
 protocadherin alpha 1
chr12_-_49449107 0.01 ENST00000301067.7
 KMT2D
 lysine (K)-specific methyltransferase 2D
chr8_-_53322303 0.01 ENST00000276480.7
 ST18
 suppression of tumorigenicity 18 (breast carcinoma) (zinc finger protein)
chr6_+_84569359 0.01 ENST00000369681.5
ENST00000369679.4
 CYB5R4
 cytochrome b5 reductase 4
chr1_-_19811962 0.01 ENST00000375142.1
ENST00000264202.6
 CAPZB
 capping protein (actin filament) muscle Z-line, beta
chr3_+_150321068 0.01 ENST00000471696.1
ENST00000477889.1
ENST00000485923.1
 SELT
 Selenoprotein T
chr3_+_38206975 0.01 ENST00000446845.1
ENST00000311806.3
 OXSR1
 oxidative stress responsive 1
chr7_-_126892303 0.01 ENST00000358373.3
 GRM8
 glutamate receptor, metabotropic 8
chr10_+_111767720 0.01 ENST00000356080.4
ENST00000277900.8
 ADD3
 adducin 3 (gamma)
chr1_+_26737253 0.01 ENST00000326279.6
 LIN28A
 lin-28 homolog A (C. elegans)
chr10_+_76586348 0.01 ENST00000372724.1
ENST00000287239.4
ENST00000372714.1
 KAT6B
 K(lysine) acetyltransferase 6B
chr19_+_58978418 0.01 ENST00000536459.2
 ZNF324
 zinc finger protein 324
chrX_+_47077632 0.01 ENST00000457458.2
 CDK16
 cyclin-dependent kinase 16
chr18_-_18691739 0.01 ENST00000399799.2
 ROCK1
 Rho-associated, coiled-coil containing protein kinase 1
chr5_+_140213815 0.01 ENST00000525929.1
ENST00000378125.3
 PCDHA7
 protocadherin alpha 7
chr5_+_140345820 0.01 ENST00000289269.5
 PCDHAC2
 protocadherin alpha subfamily C, 2
chr21_-_46707793 0.01 ENST00000331343.7
ENST00000349485.5
 POFUT2
 protein O-fucosyltransferase 2
chr6_+_37137939 0.01 ENST00000373509.5
 PIM1
 pim-1 oncogene
chr3_-_160283348 0.01 ENST00000334256.4
 KPNA4
 karyopherin alpha 4 (importin alpha 3)
chr16_-_3930724 0.01 ENST00000262367.5
 CREBBP
 CREB binding protein
chr4_-_113437328 0.01 ENST00000313341.3
 NEUROG2
 neurogenin 2
chr10_-_75634260 0.01 ENST00000372765.1
ENST00000351293.3
 CAMK2G
 calcium/calmodulin-dependent protein kinase II gamma
chr1_-_116383738 0.00 ENST00000320238.3
 NHLH2
 nescient helix loop helix 2
chr2_-_26101374 0.00 ENST00000435504.4
 ASXL2
 additional sex combs like 2 (Drosophila)
chr9_+_77112244 0.00 ENST00000376896.3
 RORB
 RAR-related orphan receptor B
chr5_-_108745689 0.00 ENST00000361189.2
 PJA2
 praja ring finger 2, E3 ubiquitin protein ligase
chr15_-_65477637 0.00 ENST00000300107.3
 CLPX
 caseinolytic mitochondrial matrix peptidase chaperone subunit
chr21_+_38071430 0.00 ENST00000290399.6
 SIM2
 single-minded family bHLH transcription factor 2
chr6_-_8064567 0.00 ENST00000543936.1
ENST00000397457.2
 BLOC1S5
 biogenesis of lysosomal organelles complex-1, subunit 5, muted
chr17_-_62502639 0.00 ENST00000225792.5
ENST00000581697.1
ENST00000584279.1
ENST00000577922.1
 DDX5
 DEAD (Asp-Glu-Ala-Asp) box helicase 5
chr3_-_192445289 0.00 ENST00000430714.1
ENST00000418610.1
ENST00000448795.1
ENST00000445105.2
 FGF12
 fibroblast growth factor 12
chr5_+_140186647 0.00 ENST00000512229.2
ENST00000356878.4
ENST00000530339.1
 PCDHA4
 protocadherin alpha 4
chr21_+_33245548 0.00 ENST00000270112.2
 HUNK
 hormonally up-regulated Neu-associated kinase
chr15_+_52311398 0.00 ENST00000261845.5
 MAPK6
 mitogen-activated protein kinase 6
chr9_-_73736511 0.00 ENST00000377110.3
ENST00000377111.2
 TRPM3
 transient receptor potential cation channel, subfamily M, member 3
chr16_-_69419871 0.00 ENST00000603068.1
ENST00000254942.3
ENST00000567296.2
 TERF2
 telomeric repeat binding factor 2
chr9_-_127952032 0.00 ENST00000456642.1
ENST00000373546.3
ENST00000373547.4
 PPP6C
 protein phosphatase 6, catalytic subunit
chr15_+_79724858 0.00 ENST00000305428.3
 KIAA1024
 KIAA1024
chr17_-_27278304 0.00 ENST00000577226.1
 PHF12
 PHD finger protein 12
chr17_-_80231557 0.00 ENST00000392334.2
ENST00000314028.6
 CSNK1D
 casein kinase 1, delta
chr2_-_86564776 0.00 ENST00000165698.5
ENST00000541910.1
ENST00000535845.1
 REEP1
 receptor accessory protein 1
chr9_+_96214166 0.00 ENST00000375389.3
ENST00000333936.5
ENST00000340893.4
 FAM120A
 family with sequence similarity 120A
chr6_-_91006461 0.00 ENST00000257749.4
ENST00000343122.3
ENST00000406998.2
ENST00000453877.1
 BACH2
 BTB and CNC homology 1, basic leucine zipper transcription factor 2
chr2_+_26467762 0.00 ENST00000317799.5
ENST00000405867.3
ENST00000537713.1
 HADHB
 hydroxyacyl-CoA dehydrogenase/3-ketoacyl-CoA thiolase/enoyl-CoA hydratase (trifunctional protein), beta subunit
chr1_-_93645818 0.00 ENST00000370280.1
ENST00000479918.1
 TMED5
 transmembrane emp24 protein transport domain containing 5
chr8_+_1449532 0.00 ENST00000421627.2
 DLGAP2
 discs, large (Drosophila) homolog-associated protein 2

Gene Ontology Analysis

Gene overrepresentation in cellular_component category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.1 GO:0031372 UBC13-MMS2 complex(GO:0031372)

Gene overrepresentation in biological_process category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.3 GO:0070563 negative regulation of vitamin D receptor signaling pathway(GO:0070563)
0.1 0.2 GO:0072275 metanephric glomerulus morphogenesis(GO:0072275) metanephric glomerulus vasculature morphogenesis(GO:0072276) metanephric glomerular capillary formation(GO:0072277)
0.0 0.1 GO:0009996 negative regulation of Wnt signaling pathway involved in heart development(GO:0003308) negative regulation of cell fate specification(GO:0009996) Wnt signaling pathway involved in somitogenesis(GO:0090244)
0.0 0.1 GO:2000276 negative regulation of peroxisome proliferator activated receptor signaling pathway(GO:0035359) negative regulation of oxidative phosphorylation uncoupler activity(GO:2000276)
0.0 0.1 GO:0048880 sensory system development(GO:0048880)
0.0 0.2 GO:1904684 negative regulation of metalloendopeptidase activity(GO:1904684)
0.0 0.1 GO:0048549 positive regulation of pinocytosis(GO:0048549)
0.0 0.2 GO:0045964 positive regulation of catecholamine metabolic process(GO:0045915) positive regulation of dopamine metabolic process(GO:0045964)
0.0 0.1 GO:0045629 negative regulation of T-helper 2 cell differentiation(GO:0045629)
0.0 0.1 GO:0031064 negative regulation of histone deacetylation(GO:0031064)
0.0 0.1 GO:0045048 protein insertion into ER membrane(GO:0045048)
0.0 0.0 GO:0090107 aminophospholipid transport(GO:0015917) regulation of high-density lipoprotein particle assembly(GO:0090107)
0.0 0.2 GO:0060628 regulation of ER to Golgi vesicle-mediated transport(GO:0060628)
0.0 0.0 GO:0097156 fasciculation of motor neuron axon(GO:0097156)

Gene overrepresentation in molecular_function category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.2 GO:0005017 platelet-derived growth factor-activated receptor activity(GO:0005017)
0.0 0.2 GO:0010858 calcium-dependent protein kinase regulator activity(GO:0010858)
0.0 0.1 GO:0035033 histone deacetylase regulator activity(GO:0035033)
0.0 0.0 GO:0034188 apolipoprotein A-I receptor activity(GO:0034188) phosphatidylserine-translocating ATPase activity(GO:0090556)
0.0 0.1 GO:0047144 2-acylglycerol-3-phosphate O-acyltransferase activity(GO:0047144)
0.0 0.1 GO:0039706 co-receptor binding(GO:0039706)
0.0 0.1 GO:0070740 tubulin-glutamic acid ligase activity(GO:0070740)