ISMARA results for ENCODE cell lines, H3K4me2 (Ernst 2011)

ISMARA - Integrated System for Motif Actitivity Response Analysis is a free online tool that recognizes most important transcription factors that are changing their activity in a set of samples.

All motifs sorted by activity significance

Motif name Z-value Associated genes Profile Logo
HNF1A.p2 9.616 HNF1A (HNF1, LFB1)
PITX1..3.p2 9.583 PITX2 (IGDS, RS, Brx1, Otlx2, ARP1)
PITX3
PITX1 (PTX1, POTX)
SNAI1..3.p2 8.184 SNAI2 (SLUGH1)
SNAI1 (SNA, SLUGH2, SNAH)
SNAI3 (SMUC, Zfp293)
HIC1.p2 7.893 HIC1 (ZBTB29)
HNF4A_NR2F1,2.p2 7.784 NR2F1 (EAR-3, COUP-TFI, TCFCOUP1, SVP44)
NR2F2 (COUP-TFII, COUPTFB, SVP40)
HNF4A (NR2A1, HNF4)
NRF1.p2 7.419 NRF1 (EWG, ALPHA-PAL)
YY1.p2 6.619 YY1 (NF-E1, DELTA, UCRBP, YIN-YANG-1, INO80S)
ELK1,4_GABP{A,B1}.p3 5.725 GABPA (E4TF1A, NFT2, NRF2, E4TF1-60, NRF2A)
GABPB1 (E4TF1-47, GABPB)
ELK4 (SAP1)
ELK1
MTF1.p2 5.556 MTF1
RUNX1..3.p2 5.272 RUNX1 (PEBP2A2, AMLCR1)
RUNX3 (AML2, PEBP2A3)
RUNX2 (AML3, PEBP2A1, PEBP2aA1)
FOS_FOS{B,L1}_JUN{B,D}.p2 5.101 FOS (c-fos, AP-1)
JUNB
FOSL1 (fra-1)
JUND (AP-1)
FOSB (G0S3, GOSB, GOS3, AP-1, MGC42291, DKFZp686C0818)
HOX{A6,A7,B6,B7}.p2 4.884 HOXB6
HOXA7
HOXB7
HOXA6
PRRX1,2.p2 4.879 PRRX2 (PRX2, PMX2)
PRRX1 (PHOX1)
SPIB.p2 4.623 SPIB (SPI-B)
EHF.p2 4.598 EHF
GATA6.p2 4.543 GATA6
NFY{A,B,C}.p2 4.386 NFYC (CBF-C)
NFYB (CBF-A, HAP3)
NFYA (HAP2, CBF-B)
TFCP2.p2 4.343 TFCP2 (CP2, LSF, LBP-1C, TFCP2C)
ZNF143.p2 4.231 ZNF143 (SBF, pHZ-1, STAF)
KLF4.p3 4.228 KLF4 (EZF, GKLF)
TCF4_dimer.p2 3.999 TCF4 (E2-2, ITF2, PTHS, SEF2, SEF2-1, SEF2-1A, SEF2-1B, bHLHb19, MGC149723, MGC149724)
MEF2{A,B,C,D}.p2 3.962 MEF2A (RSRFC4, RSRFC9)
MEF2C
MEF2D
MEF2BNB-MEF2B (MEF2B, LOC729991-MEF2B)
MEF2B (RSRFR2, FLJ32648)
TFAP2{A,C}.p2 3.910 TFAP2C (AP2-GAMMA, ERF1, TFAP2G, hAP-2g)
TFAP2A (AP-2)
TEAD1.p2 3.872 TEAD1 (TEF-1)
TEAD2 (ETF, TEF4, TEF-4, TEAD-2)
TEAD3 (TEF5, TEAD5, TEF-5, DTEF-1, ETFR-1, TEAD-3)
TEAD4 (TEF3, RTEF1, TEF-3, EFTR-2, TEFR-1, TCF13L1, hRTEF-1B)
EN1,2.p2 3.867 EN1
EN2
RFX1..5_RFXANK_RFXAP.p2 3.765 RFX1 (EF-C)
RFXAP
RFX5
RFXANK (BLS, RFX-B, ANKRA1, F14150_1, MGC138628)
RFX4
RFX3
RFX2 (FLJ14226)
FEV.p2 3.732 FEV (PET-1, HSRNAFEV)
MZF1.p2 3.708 MZF1 (MZF1B, ZSCAN6, MZF-1, Zfp98)
EBF1.p2 3.574 EBF1 (OLF1)
SPI1.p2 3.456 SPI1 (PU.1, SPI-A, OF, SFPI1, SPI-1)
TFAP2B.p2 3.420 TFAP2B (AP2-B)
NFKB1_REL_RELA.p2 3.360 RELA (p65)
REL (I-Rel)
NFKB1 (KBF1, p105)
IRF1,2,7.p3 3.349 IRF1 (MAR, IRF-1)
IRF2 (IRF-2, DKFZp686F0244)
IRF7 (IRF7A, IRF-7H)
ELF1,2,4.p2 3.292 ELF2 (EU32, NERF, NERF-2, NERF-1A, NERF-1B)
ELF1
ELF4 (MEF, ELFR)
FOXA2.p3 3.261 FOXA2
ETS1,2.p2 3.213 ETS2
ETS1 (FLJ10768, ETS-1)
HAND1,2.p2 3.203 HAND1 (eHand, Thing1, Hxt, bHLHa27)
HAND2 (dHand, Thing2, Hed, bHLHa26)
ZEB1.p2 3.175 ZEB1 (BZP, ZEB, AREB6, NIL-2-A, Zfhep, Zfhx1a)
MAFB.p2 3.159 MAFB
NHLH1,2.p2 3.154 NHLH1 (NSCL, NSCL1, bHLHa35)
NHLH2 (NSCL2, bHLHa34)
KLF12.p2 3.094 KLF12 (AP-2rep, HSPC122, AP2REP)
CTCF.p2 3.031 CTCF
DBP.p2 2.997 DBP (DABP)
HBP1_HMGB_SSRP1_UBTF.p2 2.986 HMGB2
HMGB3 (HMG2A, MGC90319)
SSRP1 (FACT80)
UBTF (UBF, NOR-90)
HBP1
MYB.p2 2.985 MYB (c-myb)
MYOD1.p2 2.950 MYOD1 (PUM, MYOD, bHLHc1)
ZNF384.p2 2.883 ZNF384 (CAGH1A, CIZ, NMP4, NP)
MYFfamily.p2 2.828 MYOD1 (PUM, MYOD, bHLHc1)
MYF6 (MRF4, bHLHc4)
MYF5 (bHLHc2)
MYOG (bHLHc3)
POU2F1..3.p2 2.819 POU2F2 (OCT2)
POU2F1 (OCT1)
POU2F3 (OCT11, PLA-1, Skn-1a, Epoc-1)
NR1H4.p2 2.783 NR1H4 (FXR, RIP14, HRR1, HRR-1)
TLX1..3_NFIC{dimer}.p2 2.742 TLX1
TLX3 (RNX)
POU5F1.p2 2.720 POU5F1 (OCT3, Oct4, MGC22487)
RREB1.p2 2.719 RREB1 (HNT)
SMAD1..7,9.p2 2.705 SMAD5 (Dwfc, JV5-1)
SMAD1 (MADR1, JV4-1)
SMAD3 (JV15-2, HsT17436)
SMAD4 (DPC4)
SMAD2 (MADR2, JV18-1)
SMAD6 (HsT17432)
SMAD7
SMAD9
NR5A1,2.p2 2.680 NR5A1 (FTZ1, SF-1, ELP, AD4BP)
NR5A2 (FTZ-F1beta, hB1F, LRH-1, FTZ-F1, hB1F-2, B1F2)
PRDM1.p3 2.645 PRDM1 (PRDI-BF1)
GTF2I.p2 2.639 GTF2I (TFII-I, BAP-135, SPIN, BTKAP1, DIWS, IB291)
ATF5_CREB3.p2 2.579 ATF5
CREB3 (LZIP, Luman)
BPTF.p2 2.567 BPTF (FAC1, NURF301)
TGIF1.p2 2.543 TGIF1
GFI1B.p2 2.539 GFI1B
NFATC1..3.p2 2.530 NFATC3 (NFAT4, NFATX)
NFATC2 (NF-ATP, NFATp, NFAT1)
NFATC1 (NF-ATC, NFATc, NFAT2)
NFE2L2.p2 2.512 NFE2L2 (NRF2)
ZIC1..3.p2 2.511 ZIC1 (ZIC, ZNF201)
ZIC2 (HPE5)
ZIC3 (HTX, ZNF203)
PAX5.p2 2.501 PAX5 (BSAP)
EP300.p2 2.500 EP300 (p300, KAT3B)
ONECUT1,2.p2 2.488 ONECUT2 (OC-2)
ONECUT1 (HNF-6)
PATZ1.p2 2.439 PATZ1 (MAZR, dJ400N23, ZBTB19, ZSG, RIAZ, PATZ)
ESRRA.p2 2.426 ESRRA (ERR1, ERRalpha, NR3B1, ERRa)
ZFP161.p2 2.419 ZFP161 (ZNF478, ZBTB14)
ESR1.p2 2.418 ESR1 (NR3A1, Era)
IKZF2.p2 2.380 IKZF2 (Helios)
ZNF423.p2 2.345 ZNF423 (KIAA0760, OAZ, Roaz, Ebfaz, Zfp104)
E2F1..5.p2 2.344 E2F4 (E2F-4)
E2F5
E2F2 (E2F-2)
E2F1 (RBP3)
E2F3
MAZ.p2 2.333 MAZ (ZF87, Pur-1, Zif87, ZNF801)
DMAP1_NCOR{1,2}_SMARC.p2 2.316 SMARCA1 (SNF2LB, NURF140, ISWI, SWI)
SMARCC2 (BAF170, Rsc8, CRACC2)
SMARCA5 (hSNF2H, hISWI, ISWI)
NCOR1 (N-CoR, hCIT529I10, TRAC1, hN-CoR, KIAA1047, MGC104216)
NCOR2 (SMRT, SMRTE, TRAC-1, CTG26, TNRC14)
DMAP1 (DNMAP1, FLJ11543, KIAA1425, DNMTAP1, EAF2, SWC4)
TFDP1.p2 2.309 TFDP1 (Dp-1, DRTF1, DP1)
LEF1_TCF7_TCF7L1,2.p2 2.224 TCF7 (TCF-1)
TCF7L2 (TCF-4)
LEF1 (TCF1ALPHA)
TCF7L1
GFI1.p2 2.166 GFI1
MYBL2.p2 2.151 MYBL2 (BMYB, B-MYB)
CREB1.p2 2.151 CREB1
POU3F1..4.p2 2.148 POU3F1 (OCT6, SCIP)
POU3F3 (BRN1, OTF8)
POU3F2 (POUF3, BRN2, OCT7)
POU3F4 (BRN4, OTF9)
HMGA1,2.p2 2.147 HMGA1
HMGA2 (BABL, LIPO)
SP1.p2 2.143 SP1
FOX{I1,J2}.p2 2.117 FOXI1 (FREAC6)
FOXJ2 (FHX)
ARNT_ARNT2_BHLHB2_MAX_MYC_USF1.p2 2.117 ARNT (HIF-1beta, bHLHe2)
MAX (bHLHd4)
MYC (c-Myc, bHLHe39)
USF1 (UEF, MLTFI, bHLHb11)
BHLHB2 (DEC1, bHLHe40)
ARNT2 (KIAA0307, bHLHe1)
EGR1..3.p2 2.105 EGR3 (PILOT)
EGR1 (TIS8, G0S30, NGFI-A, KROX-24, ZIF-268, AT225, ZNF225)
EGR2
HLF.p2 2.098 HLF (MGC33822)
ZNF148.p2 2.095 ZNF148 (BERF-1, ZBP-89, BFCOL1, HT-BETA, ZFP148, pHZ-52)
AHR_ARNT_ARNT2.p2 2.088 ARNT (HIF-1beta, bHLHe2)
AHR
ARNT2 (KIAA0307, bHLHe1)
HOX{A5,B5}.p2 2.087 HOXB5
HOXA5
REST.p3 2.084 REST (NRSF, XBR)
GTF2A1,2.p2 2.074 GTF2A1 (TFIIA)
GTF2A2 (TFIIA, HsT18745)
LMO2.p2 2.059 LMO2 (TTG2, RHOM2, RBTN2)
NFIX.p2 2.041 NFIX (NF1A)
ZNF238.p2 2.027 ZNF238 (C2H2-171, TAZ-1, RP58, ZBTB18)
CEBPA,B_DDIT3.p2 2.027 DDIT3 (CHOP10, GADD153, CHOP)
CEBPA (C/EBP-alpha)
CEBPB (LAP, CRP2, NFIL6, IL6DBP)
GATA1..3.p2 2.007 GATA1 (ERYF1, NFE1)
GATA2 (NFE1B)
GATA3 (HDR)
JUN.p2 2.000 JUN (c-Jun, AP-1)
JUND (AP-1)
JUNB
CRX.p2 1.959 CRX (CRD, LCA7, OTX3)
NKX2-2,8.p2 1.952 NKX2-2 (NKX2.2)
NKX2-8 (NKX2.8, Nkx2-9)
GLI1..3.p2 1.947 GLI1
GLI2 (THP2, HPE9, THP1)
GLI3 (PAP-A, PAPA, PAPA1, PAPB, ACLS, PPDIV)
HMX1.p2 1.935 HMX1 (H6, NKX5-3)
MSX1,2.p2 1.926 MSX1 (HYD1, OFC5)
MSX2 (CRS2, FPP, HOX8, MSH, PFM)
FOXQ1.p2 1.912 FOXQ1 (HFH1)
ZBTB16.p2 1.900 ZBTB16 (PLZF)
FOXO1,3,4.p2 1.880 FOXO1 (FKH1)
FOXO4 (AFX1)
FOXO3 (AF6q21, FOXO2)
EVI1.p2 1.848 EVI1 (MDS1-EVI1, PRDM3)
TFAP4.p2 1.844 TFAP4 (AP-4)
SRF.p3 1.817 SRF (MCM1)
POU5F1_SOX2{dimer}.p2 1.816 POU5F1 (OCT3, Oct4, MGC22487)
SOX2
NFE2L1.p2 1.799 NFE2L1 (NRF1, LCR-F1, FLJ00380, TCF11)
RXR{A,B,G}.p2 1.790 RXRA (NR2B1)
RXRB (NR2B2, H-2RIIBP, RCoR-1)
RXRG (NR2B3)
bHLH_family.p2 1.786 ARNTL (MOP3, JAP3, BMAL1, PASD3, bHLHe5)
MITF (WS2A, MI, bHLHe32)
MXI1 (MXD2, MAD2, MXI, bHLHc11)
TFE3 (TFEA, bHLHe33)
CLOCK (KIAA0334, KAT13D, bHLHe8)
OLIG2 (RACK17, OLIGO2, bHLHe19)
MXD4 (MAD4, MSTP149, MST149, bHLHc12)
HEY2 (bHLHb32)
HEY1 (HESR-1, CHF2, HESR1, HRT-1, CHF-2, HERP2, BHLHb31)
HEYL (bHLHb33)
MLXIPL (WS-bHLH, MIO, CHREBP, MONDOB)
HES6 (bHLHc23)
MXD3 (MAD3, bHLHc13)
ARNTL2 (BMAL2, MOP9, CLIF, PASD9, bHLHe6)
ID1 (dJ857M17.1.2, bHLHb24)
MNT (ROX, MXD6, MAD6, bHLHd3)
OLIG1 (BHLHB6, bHLHe21)
NPAS2 (MOP4, PASD4, bHLHe9)
NKX2-1,4.p2 1.781 NKX2-1 (TTF-1)
NKX2-4 (NKX2.4)
TBP.p2 1.780 TBP (TFIID)
XBP1.p3 1.716 XBP1
NKX3-1.p2 1.683 NKX3-1 (NKX3.1, BAPX2)
POU1F1.p2 1.664 POU1F1 (GHF-1)
SRY.p2 1.654 SRY (TDF)
RXRA_VDR{dimer}.p2 1.588 VDR (NR1I1)
FOXL1.p2 1.569 FOXL1 (FREAC7, FKH6)
SOX{8,9,10}.p2 1.558 SOX9 (SRA1)
SOX8
SOX10 (DOM, WS4, WS2E)
TLX2.p2 1.524 TLX2 (Enx, Tlx2, NCX)
POU6F1.p2 1.514 POU6F1 (BRN5, MPOU, TCFB1)
PBX1.p2 1.506 PBX1
PAX2.p2 1.505 PAX2
ZBTB6.p2 1.502 ZBTB6 (ZID)
NKX3-2.p2 1.492 NKX3-2 (NKX3B, NKX3.2)
FOX{F1,F2,J1}.p2 1.458 FOXF2 (FREAC2)
FOXJ1 (HFH-4, HFH4)
FOXF1 (FREAC1)
TAL1_TCF{3,4,12}.p2 1.457 TCF3 (E2A, ITF1, MGC129647, MGC129648, bHLHb21)
TCF4 (SEF2-1B, ITF2, bHLHb19)
TAL1 (SCL, bHLHa17)
TCF12 (HEB, HTF4, HsT17266, bHLHb20)
RBPJ.p2 1.452 RBPJ (SUH, IGKJRB, RBPJK, KBF2, RBP-J, CBF1)
PPARG.p2 1.427 PPARG (PPARG1, PPARG2, NR1C3, PPARgamma)
NANOG{mouse}.p2 1.419 NANOG (FLJ12581, FLJ40451)
FOX{D1,D2}.p2 1.394 FOXD2 (FREAC9)
FOXD1 (FREAC4)
FOXN1.p2 1.358 FOXN1 (FKHL20)
HOX{A4,D4}.p2 1.348 HOXA4
HOXD4
IKZF1.p2 1.307 IKZF1 (hIk-1, LyF-1, Hs.54452, IKAROS)
SOX5.p2 1.299 SOX5 (L-SOX5, MGC35153)
HSF1,2.p2 1.294 HSF1 (HSTF1)
HSF2
FOXP3.p2 1.288 FOXP3 (JM2, XPID, AIID, PIDX, DIETER, SCURFIN)
NKX6-1,2.p2 1.286 NKX6-1 (Nkx6.1)
NKX6-2 (NKX6B, GTX, NKX6.1)
FOXD3.p2 1.281 FOXD3 (Genesis, HFH2)
BACH2.p2 1.280 BACH2
TFEB.p2 1.276 TFEB
CDC5L.p2 1.271 CDC5L (PCDC5RP, hCDC5, CEF1)
NR3C1.p2 1.266 NR3C1 (GR)
SPZ1.p2 1.259 SPZ1 (NYD-TSP1, FLJ25709)
T.p2 1.252 T
CDX1,2,4.p2 1.250 CDX1
CDX2
CDX4
ATF2.p2 1.250 ATF2 (TREB7, CRE-BP1, HB16)
ATF4.p2 1.245 ATF4 (TAXREB67, CREB-2)
FOX{C1,C2}.p2 1.238 FOXC1 (FREAC3, ARA, IGDA, IHG1)
FOXC2 (MFH-1)
PAX4.p2 1.228 PAX4
STAT2,4,6.p2 1.215 STAT2 (STAT113)
STAT4
STAT6 (D12S1644, IL-4-STAT)
RXRG_dimer.p3 1.214 NR1H2 (NER, NER-I, RIP15, LXR-b)
RXRA (NR2B1)
PPARG (PPARG1, PPARG2, NR1C3, PPARgamma)
PPARA (hPPAR, NR1C1)
RXRB (NR2B2, H-2RIIBP, RCoR-1)
RXRG (NR2B3)
NANOG.p2 1.193 NANOG (FLJ12581, FLJ40451)
SOX17.p2 1.176 SOX17
FOSL2.p2 1.164 FOSL2 (FRA2, FLJ23306)
HOXA9_MEIS1.p2 1.162 MEIS1
HOXA9
STAT5{A,B}.p2 1.152 STAT5B
STAT5A (MGF)
AIRE.p2 1.146 AIRE (PGA1, APS1)
NFE2.p2 1.145 NFE2 (NF-E2)
ARID5B.p2 1.141 ARID5B (FLJ21150, MRF2)
ALX1.p2 1.113 ALX1
TBX4,5.p2 1.107 TBX5
TBX4
TP53.p2 1.103 TP53 (p53, LFS1)
EWSR1-FLI1.p2 1.100 FLI1 (EWSR2, SIC-1)
EWSR1 (EWS, K984G1.4)
NKX2-3_NKX2-5.p2 1.078 NKX2-5 (CSX1, NKX2.5, NKX4-1)
NKX2-3 (NKX2.3, CSX3, NKX4-3)
HIF1A.p2 1.047 HIF1A (MOP1, HIF-1alpha, PASD8, HIF1)
EOMES.p2 1.007 EOMES (TBR2)
CUX2.p2 1.002 CUX2 (KIAA0293, CDP2)
SREBF1,2.p2 0.980 SREBF1 (SREBP1, bHLHd1)
SREBF2 (SREBP2, bHLHd2)
SOX2.p2 0.972 SOX2
ADNP_IRX_SIX_ZHX.p2 0.967 SIX5
ZHX1
IRX4
ADNP (KIAA0784, ADNP1)
ZHX3 (KIAA0395)
ZHX2 (KIAA0854)
IRX5 (IRX-2a)
SIX2
NR6A1.p2 0.954 NR6A1 (GCNF1, RTR)
HES1.p2 0.934 HES1 (FLJ20408, HES-1, Hes1, bHLHb39)
AR.p2 0.926 AR (AIS, NR3C4, SMAX1, HUMARA)
NFIL3.p2 0.889 NFIL3 (E4BP4, NFIL3A, NF-IL3A)
VSX1,2.p2 0.854 VSX2 (RET1)
VSX1 (PPD)
LHX3,4.p2 0.839 LHX3
LHX4 (Gsh4)
ATF6.p2 0.834 ATF6 (ATF6A)
STAT1,3.p3 0.737 STAT1 (STAT91, ISGF-3)
STAT3 (APRF)
PAX6.p2 0.704 PAX6 (D11S812E, AN, WAGR)
PDX1.p2 0.651 PDX1 (IDX-1, STF-1, PDX-1, MODY4)
RORA.p2 0.525 RORA (RZRA, ROR1, ROR2, ROR3, NR1F1)
GZF1.p2 0.459 GZF1 (dJ322G13.2, ZBTB23)
PAX8.p2 0.281 PAX8
PAX3,7.p2 0.227 PAX7 (Hup1)
PAX3 (HUP2)

All samples sorted alphabetically


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Project name:

Sample name Condition Replicate/Batch
Rep1_GM12878
Rep1_HepG2
Rep1_HMEC
Rep1_HSMM
Rep1_Huvec
Rep1_K562
Rep1_NHEK
Rep1_NHLF
Rep2_GM12878
Rep2_HepG2
Rep2_HMEC
Rep2_HSMM
Rep2_Huvec
Rep2_K562
Rep2_NHEK
Rep2_NHLF