A549 cells infected with RSV Analysis Results (GEO series: GSE147507)
ISMARA - Integrated System for Motif Actitivity Response Analysis is a free online tool that recognizes most important transcription factors that are changing their activity in a set of samples.
Motif name | Z-value | Associated genes | Profile | Logo |
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IRF2_STAT2_IRF8_IRF1 | 16.83 |
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IRF9 | 10.71 |
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IRF3 | 7.23 |
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IRF6_IRF4_IRF5 | 6.57 |
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HNF1A_HNF1B | 5.56 |
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YBX1_FOS_NFYC_NFYA_NFYB_CEBPZ | 4.80 |
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ZBTB33_CHD2 | 4.15 |
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PLAGL1 | 4.07 |
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NRF1 | 3.84 |
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ZNF711_TFAP2A_TFAP2D | 3.75 |
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In order to use ARMADA for infering putative regulatory networks from timecourse data, please set for every sample a timepoint, gap from previous timepoint and replicate. If you have only one replicate per sample you can leave replicate field unset.
Sample name | Condition | Replicate/Batch |
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svRNA184-mock-1-indexF1_S13 | ||
svRNA184-mock-3-indexF3_S15 | ||
svRNA184-RSV-1-indexF4_S16 | ||
svRNA184-RSV-3-indexH9_S18 |