Project

A549 cells infected with RSV Analysis Results (GEO series: GSE147507)

Navigation
Downloads

Results for ACUGGCC

Z-value: 0.77

Motif logo

logo of

miRNA associated with seed ACUGGCC

NamemiRBASE accession
hsa-miR-193a-3p
MIMAT0000459
hsa-miR-193b-3p
MIMAT0002819

Activity profile of ACUGGCC motif

Sorted Z-values of ACUGGCC motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
chr17_+_68165657 1.85 ENST00000243457.3
KCNJ2
potassium inwardly-rectifying channel, subfamily J, member 2
chr5_+_177540444 0.58 ENST00000274605.5
N4BP3
NEDD4 binding protein 3
chr5_+_38846101 0.48 ENST00000274276.3
OSMR
oncostatin M receptor
chr17_-_66287257 0.44 ENST00000327268.4
SLC16A6
solute carrier family 16, member 6
chr1_+_182992545 0.35 ENST00000258341.4
LAMC1
laminin, gamma 1 (formerly LAMB2)
chr14_-_77495007 0.35 ENST00000238647.3
IRF2BPL
interferon regulatory factor 2 binding protein-like
chr2_+_176957619 0.34 ENST00000392539.3
HOXD13
homeobox D13
chr11_-_115375107 0.29 ENST00000545380.1
ENST00000452722.3
ENST00000537058.1
ENST00000536727.1
ENST00000542447.2
ENST00000331581.6
CADM1
cell adhesion molecule 1
chr11_+_69455855 0.29 ENST00000227507.2
ENST00000536559.1
CCND1
cyclin D1
chr12_+_11802753 0.27 ENST00000396373.4
ETV6
ets variant 6
chr2_+_12857015 0.26 ENST00000155926.4
TRIB2
tribbles pseudokinase 2
chr1_+_183155373 0.25 ENST00000493293.1
ENST00000264144.4
LAMC2
laminin, gamma 2
chr22_+_24951436 0.24 ENST00000215829.3
SNRPD3
small nuclear ribonucleoprotein D3 polypeptide 18kDa
chr22_+_21771656 0.21 ENST00000407464.2
HIC2
hypermethylated in cancer 2
chr12_-_96794143 0.21 ENST00000543119.2
CDK17
cyclin-dependent kinase 17
chr15_-_41408409 0.21 ENST00000361937.3
INO80
INO80 complex subunit
chr8_-_93115445 0.19 ENST00000523629.1
RUNX1T1
runt-related transcription factor 1; translocated to, 1 (cyclin D-related)
chr13_+_98794810 0.19 ENST00000595437.1
FARP1
FERM, RhoGEF (ARHGEF) and pleckstrin domain protein 1 (chondrocyte-derived)
chr2_-_213403565 0.19 ENST00000342788.4
ENST00000436443.1
ERBB4
v-erb-b2 avian erythroblastic leukemia viral oncogene homolog 4
chr3_-_52312636 0.18 ENST00000296490.3
WDR82
WD repeat domain 82
chr17_+_61086917 0.18 ENST00000424789.2
ENST00000389520.4
TANC2
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2
chr10_-_62149433 0.18 ENST00000280772.2
ANK3
ankyrin 3, node of Ranvier (ankyrin G)
chr7_+_155250824 0.18 ENST00000297375.4
EN2
engrailed homeobox 2
chr3_-_124774802 0.17 ENST00000311127.4
HEG1
heart development protein with EGF-like domains 1
chr12_-_57030115 0.17 ENST00000379441.3
ENST00000179765.5
ENST00000551812.1
BAZ2A
bromodomain adjacent to zinc finger domain, 2A
chr11_-_62494821 0.17 ENST00000301785.5
HNRNPUL2
heterogeneous nuclear ribonucleoprotein U-like 2
chr20_-_4982132 0.16 ENST00000338244.1
ENST00000424750.2
SLC23A2
solute carrier family 23 (ascorbic acid transporter), member 2
chr19_+_39616410 0.16 ENST00000602004.1
ENST00000599470.1
ENST00000321944.4
ENST00000593480.1
ENST00000358301.3
ENST00000593690.1
ENST00000599386.1
PAK4
p21 protein (Cdc42/Rac)-activated kinase 4
chr15_-_61521495 0.15 ENST00000335670.6
RORA
RAR-related orphan receptor A
chr2_+_14772810 0.15 ENST00000295092.2
ENST00000331243.4
FAM84A
family with sequence similarity 84, member A
chr2_-_38978492 0.14 ENST00000409276.1
ENST00000446327.2
ENST00000313117.6
SRSF7
serine/arginine-rich splicing factor 7
chr6_-_16761678 0.14 ENST00000244769.4
ENST00000436367.1
ATXN1
ataxin 1
chr18_-_53255766 0.14 ENST00000566286.1
ENST00000564999.1
ENST00000566279.1
ENST00000354452.3
ENST00000356073.4
TCF4
transcription factor 4
chr17_+_27717415 0.13 ENST00000583121.1
ENST00000261716.3
TAOK1
TAO kinase 1
chr1_+_244227632 0.13 ENST00000598000.1
AL590483.1
Uncharacterized protein; cDNA FLJ42623 fis, clone BRACE3015894
chr5_+_179921430 0.13 ENST00000393356.1
CNOT6
CCR4-NOT transcription complex, subunit 6
chrX_-_80065146 0.12 ENST00000373275.4
BRWD3
bromodomain and WD repeat domain containing 3
chr17_-_74733404 0.12 ENST00000508921.3
ENST00000583836.1
ENST00000358156.6
ENST00000392485.2
ENST00000359995.5
SRSF2
serine/arginine-rich splicing factor 2
chr16_-_28074822 0.11 ENST00000395724.3
ENST00000380898.2
ENST00000447459.2
GSG1L
GSG1-like
chr6_-_2634820 0.11 ENST00000296847.3
C6orf195
chromosome 6 open reading frame 195
chr7_-_20826504 0.11 ENST00000418710.2
ENST00000361443.4
SP8
Sp8 transcription factor
chr19_+_797392 0.10 ENST00000350092.4
ENST00000349038.4
ENST00000586481.1
ENST00000585535.1
PTBP1
polypyrimidine tract binding protein 1
chr15_+_44719394 0.10 ENST00000260327.4
ENST00000396780.1
CTDSPL2
CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2
chr11_-_128392085 0.10 ENST00000526145.2
ENST00000531611.1
ENST00000319397.6
ENST00000345075.4
ENST00000535549.1
ETS1
v-ets avian erythroblastosis virus E26 oncogene homolog 1
chr8_-_57123815 0.10 ENST00000316981.3
ENST00000423799.2
ENST00000429357.2
PLAG1
pleiomorphic adenoma gene 1
chr11_+_128563652 0.10 ENST00000527786.2
FLI1
Fli-1 proto-oncogene, ETS transcription factor
chr8_-_89339705 0.10 ENST00000286614.6
MMP16
matrix metallopeptidase 16 (membrane-inserted)
chr22_-_39548627 0.10 ENST00000216133.5
CBX7
chromobox homolog 7
chr1_+_26126667 0.10 ENST00000361547.2
ENST00000354177.4
ENST00000374315.1
SEPN1
selenoprotein N, 1
chr2_-_208030647 0.09 ENST00000309446.6
KLF7
Kruppel-like factor 7 (ubiquitous)
chr12_-_56236711 0.09 ENST00000409200.3
MMP19
matrix metallopeptidase 19
chr1_+_76540386 0.09 ENST00000328299.3
ST6GALNAC3
ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3
chr2_-_180726232 0.09 ENST00000410066.1
ZNF385B
zinc finger protein 385B
chr10_+_75670862 0.09 ENST00000446342.1
ENST00000372764.3
ENST00000372762.4
PLAU
plasminogen activator, urokinase
chr16_+_85646763 0.09 ENST00000411612.1
ENST00000253458.7
GSE1
Gse1 coiled-coil protein
chr2_+_85981008 0.08 ENST00000306279.3
ATOH8
atonal homolog 8 (Drosophila)
chr18_-_47013586 0.08 ENST00000318240.3
ENST00000579820.1
C18orf32
chromosome 18 open reading frame 32
chr2_-_217560248 0.08 ENST00000233813.4
IGFBP5
insulin-like growth factor binding protein 5
chr4_+_55524085 0.08 ENST00000412167.2
ENST00000288135.5
KIT
v-kit Hardy-Zuckerman 4 feline sarcoma viral oncogene homolog
chrX_+_151806637 0.07 ENST00000370306.2
GABRQ
gamma-aminobutyric acid (GABA) A receptor, theta
chr8_-_101965146 0.07 ENST00000395957.2
ENST00000395948.2
ENST00000457309.1
YWHAZ
tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta
chr13_-_99404875 0.07 ENST00000376503.5
SLC15A1
solute carrier family 15 (oligopeptide transporter), member 1
chr12_-_104234966 0.07 ENST00000392876.3
NT5DC3
5'-nucleotidase domain containing 3
chr7_-_35293740 0.07 ENST00000408931.3
TBX20
T-box 20
chr8_-_30585439 0.06 ENST00000221130.5
GSR
glutathione reductase
chr11_+_118307179 0.06 ENST00000534358.1
ENST00000531904.2
ENST00000389506.5
ENST00000354520.4
KMT2A
lysine (K)-specific methyltransferase 2A
chr3_-_57199397 0.06 ENST00000296318.7
IL17RD
interleukin 17 receptor D
chr22_+_24666763 0.06 ENST00000437398.1
ENST00000421374.1
ENST00000314328.9
ENST00000541492.1
SPECC1L
sperm antigen with calponin homology and coiled-coil domains 1-like
chr15_+_64443905 0.06 ENST00000325881.4
SNX22
sorting nexin 22
chr17_+_48796905 0.06 ENST00000505658.1
ENST00000393227.2
ENST00000240304.1
ENST00000311571.3
ENST00000505619.1
ENST00000544170.1
ENST00000510984.1
LUC7L3
LUC7-like 3 (S. cerevisiae)
chr11_-_124670550 0.06 ENST00000239614.4
MSANTD2
Myb/SANT-like DNA-binding domain containing 2
chr2_+_166326157 0.06 ENST00000421875.1
ENST00000314499.7
ENST00000409664.1
CSRNP3
cysteine-serine-rich nuclear protein 3
chr1_+_145507587 0.06 ENST00000330165.8
ENST00000369307.3
RBM8A
RNA binding motif protein 8A
chr3_-_107809816 0.05 ENST00000361309.5
ENST00000355354.7
CD47
CD47 molecule
chrX_+_49687216 0.05 ENST00000376088.3
CLCN5
chloride channel, voltage-sensitive 5
chr3_+_132136331 0.05 ENST00000260818.6
DNAJC13
DnaJ (Hsp40) homolog, subfamily C, member 13
chr20_+_42086525 0.05 ENST00000244020.3
SRSF6
serine/arginine-rich splicing factor 6
chr15_+_84322827 0.05 ENST00000286744.5
ENST00000567476.1
ADAMTSL3
ADAMTS-like 3
chr2_-_161350305 0.04 ENST00000348849.3
RBMS1
RNA binding motif, single stranded interacting protein 1
chr3_-_52090461 0.04 ENST00000296483.6
ENST00000495880.1
DUSP7
dual specificity phosphatase 7
chr2_+_204192942 0.04 ENST00000295851.5
ENST00000261017.5
ABI2
abl-interactor 2
chrX_+_110339439 0.04 ENST00000372010.1
ENST00000519681.1
ENST00000372007.5
PAK3
p21 protein (Cdc42/Rac)-activated kinase 3
chr1_+_151584544 0.04 ENST00000458013.2
ENST00000368843.3
SNX27
sorting nexin family member 27
chr22_+_40390930 0.04 ENST00000333407.6
FAM83F
family with sequence similarity 83, member F
chr1_-_169863016 0.04 ENST00000367772.4
ENST00000367771.6
SCYL3
SCY1-like 3 (S. cerevisiae)
chr17_+_8213590 0.04 ENST00000361926.3
ARHGEF15
Rho guanine nucleotide exchange factor (GEF) 15
chr6_+_39760783 0.03 ENST00000398904.2
ENST00000538976.1
DAAM2
dishevelled associated activator of morphogenesis 2
chr7_-_143059845 0.03 ENST00000443739.2
FAM131B
family with sequence similarity 131, member B
chr20_+_57226284 0.03 ENST00000458280.1
ENST00000355957.5
ENST00000361770.5
ENST00000312283.8
ENST00000412911.1
ENST00000359617.4
ENST00000371141.4
STX16
syntaxin 16
chr4_-_87281224 0.03 ENST00000395169.3
ENST00000395161.2
MAPK10
mitogen-activated protein kinase 10
chr21_-_35831880 0.03 ENST00000399289.3
ENST00000432085.1
KCNE1
potassium voltage-gated channel, Isk-related family, member 1
chr6_-_47277634 0.03 ENST00000296861.2
TNFRSF21
tumor necrosis factor receptor superfamily, member 21
chr17_-_4167142 0.03 ENST00000570535.1
ENST00000574367.1
ENST00000341657.4
ENST00000433651.1
ANKFY1
ankyrin repeat and FYVE domain containing 1
chr4_+_126237554 0.03 ENST00000394329.3
FAT4
FAT atypical cadherin 4
chr16_+_56225248 0.02 ENST00000262493.6
GNAO1
guanine nucleotide binding protein (G protein), alpha activating activity polypeptide O
chr2_-_69870835 0.02 ENST00000409085.4
ENST00000406297.3
AAK1
AP2 associated kinase 1
chr9_-_3525968 0.02 ENST00000382004.3
ENST00000302303.1
ENST00000449190.1
RFX3
regulatory factor X, 3 (influences HLA class II expression)
chr19_-_14629224 0.02 ENST00000254322.2
DNAJB1
DnaJ (Hsp40) homolog, subfamily B, member 1
chr8_+_110552337 0.02 ENST00000337573.5
EBAG9
estrogen receptor binding site associated, antigen, 9
chr9_-_135819987 0.02 ENST00000298552.3
ENST00000403810.1
TSC1
tuberous sclerosis 1
chr11_+_66188475 0.01 ENST00000311034.2
NPAS4
neuronal PAS domain protein 4
chr18_+_67068228 0.01 ENST00000382713.5
DOK6
docking protein 6
chr7_-_14029515 0.01 ENST00000430479.1
ENST00000405218.2
ENST00000343495.5
ETV1
ets variant 1
chr14_+_102228123 0.01 ENST00000422945.2
ENST00000554442.1
ENST00000556260.2
ENST00000328724.5
ENST00000557268.1
PPP2R5C
protein phosphatase 2, regulatory subunit B', gamma
chr17_+_30677136 0.01 ENST00000394670.4
ENST00000321233.6
ENST00000394673.2
ENST00000341711.6
ENST00000579634.1
ENST00000580759.1
ENST00000342555.6
ENST00000577908.1
ENST00000394679.5
ENST00000582165.1
ZNF207
zinc finger protein 207
chr17_+_61627814 0.01 ENST00000310827.4
ENST00000431926.1
ENST00000415273.2
DCAF7
DDB1 and CUL4 associated factor 7
chr2_-_206950781 0.01 ENST00000403263.1
INO80D
INO80 complex subunit D
chr13_+_111365602 0.01 ENST00000333219.7
ING1
inhibitor of growth family, member 1
chr10_-_102279586 0.00 ENST00000370345.3
ENST00000451524.1
ENST00000370329.5
SEC31B
SEC31 homolog B (S. cerevisiae)
chr11_-_17035943 0.00 ENST00000355661.3
ENST00000532079.1
ENST00000448080.2
ENST00000531066.1
PLEKHA7
pleckstrin homology domain containing, family A member 7

Network of associatons between targets according to the STRING database.

First level regulatory network of ACUGGCC

PNG image of the network

In order to view interactive SVG image please either update your browser to latest version or install SVG plugin.
View svg image
View png image

Gene Ontology Analysis

Gene overrepresentation in biological_process category:

Log-likelihood per target  Total log-likelihood Term Description
0.5 1.8 GO:0090076 relaxation of skeletal muscle(GO:0090076)
0.1 0.3 GO:0045081 negative regulation of interleukin-10 biosynthetic process(GO:0045081)
0.1 0.2 GO:2000364 regulation of STAT protein import into nucleus(GO:2000364) positive regulation of STAT protein import into nucleus(GO:2000366)
0.1 0.5 GO:0038165 oncostatin-M-mediated signaling pathway(GO:0038165)
0.1 0.3 GO:0042271 susceptibility to natural killer cell mediated cytotoxicity(GO:0042271)
0.1 0.2 GO:0090271 positive regulation of fibroblast growth factor production(GO:0090271)
0.1 0.2 GO:0070904 L-ascorbic acid transport(GO:0015882) molecular hydrogen transport(GO:0015993) transepithelial L-ascorbic acid transport(GO:0070904)
0.0 0.3 GO:0048619 embryonic hindgut morphogenesis(GO:0048619)
0.0 0.2 GO:1900827 maintenance of protein location in membrane(GO:0072658) maintenance of protein location in plasma membrane(GO:0072660) positive regulation of membrane depolarization during cardiac muscle cell action potential(GO:1900827)
0.0 0.3 GO:0007296 vitellogenesis(GO:0007296)
0.0 0.4 GO:0046543 development of secondary female sexual characteristics(GO:0046543)
0.0 0.3 GO:0070141 response to UV-A(GO:0070141)
0.0 0.1 GO:0014734 skeletal muscle hypertrophy(GO:0014734) regulation of skeletal muscle hypertrophy(GO:1904204)
0.0 0.1 GO:0038162 response to stem cell factor(GO:0036215) cellular response to stem cell factor stimulus(GO:0036216) Kit signaling pathway(GO:0038109) erythropoietin-mediated signaling pathway(GO:0038162)
0.0 0.1 GO:0042938 dipeptide transport(GO:0042938)
0.0 0.6 GO:0070831 basement membrane assembly(GO:0070831)
0.0 0.1 GO:2000097 regulation of smooth muscle cell-matrix adhesion(GO:2000097)
0.0 0.1 GO:0070966 nuclear-transcribed mRNA catabolic process, no-go decay(GO:0070966)
0.0 0.1 GO:0021524 visceral motor neuron differentiation(GO:0021524)
0.0 0.2 GO:0010571 positive regulation of nuclear cell cycle DNA replication(GO:0010571)
0.0 0.1 GO:0030578 PML body organization(GO:0030578)
0.0 0.0 GO:1902954 regulation of early endosome to recycling endosome transport(GO:1902954)
0.0 0.2 GO:0080182 histone H3-K4 trimethylation(GO:0080182)
0.0 0.1 GO:0001554 luteolysis(GO:0001554)
0.0 0.2 GO:1990403 embryonic brain development(GO:1990403)

Gene overrepresentation in cellular_component category:

Log-likelihood per target  Total log-likelihood Term Description
0.3 0.3 GO:0005607 laminin-2 complex(GO:0005607)
0.2 0.5 GO:0005900 oncostatin-M receptor complex(GO:0005900)
0.1 0.4 GO:0005606 laminin-1 complex(GO:0005606) laminin-11 complex(GO:0043260)
0.0 0.2 GO:0034715 pICln-Sm protein complex(GO:0034715)
0.0 1.8 GO:0005790 smooth endoplasmic reticulum(GO:0005790)
0.0 0.2 GO:0033553 rDNA heterochromatin(GO:0033553)
0.0 0.1 GO:0042272 nuclear RNA export factor complex(GO:0042272)
0.0 0.1 GO:0035061 interchromatin granule(GO:0035061)
0.0 0.1 GO:0071203 WASH complex(GO:0071203)
0.0 0.2 GO:0072357 PTW/PP1 phosphatase complex(GO:0072357)

Gene overrepresentation in molecular_function category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 1.9 GO:0086008 voltage-gated potassium channel activity involved in cardiac muscle cell action potential repolarization(GO:0086008)
0.1 0.5 GO:0004924 oncostatin-M receptor activity(GO:0004924)
0.1 0.2 GO:0071209 U7 snRNA binding(GO:0071209)
0.1 0.2 GO:0070890 L-ascorbate:sodium symporter activity(GO:0008520) L-ascorbic acid transporter activity(GO:0015229) sodium-dependent L-ascorbate transmembrane transporter activity(GO:0070890)
0.0 0.1 GO:0005427 proton-dependent oligopeptide secondary active transmembrane transporter activity(GO:0005427) secondary active oligopeptide transmembrane transporter activity(GO:0015322)
0.0 0.1 GO:0034046 poly(G) binding(GO:0034046)
0.0 0.1 GO:0004362 glutathione-disulfide reductase activity(GO:0004362)
0.0 0.1 GO:0045322 unmethylated CpG binding(GO:0045322)
0.0 0.3 GO:0004716 receptor signaling protein tyrosine kinase activity(GO:0004716)
0.0 0.2 GO:0008142 oxysterol binding(GO:0008142)
0.0 0.3 GO:0055106 ubiquitin-protein transferase regulator activity(GO:0055106)
0.0 0.1 GO:0001665 alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase activity(GO:0001665)

Gene overrepresentation in C2:CP category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.6 PID INTEGRIN4 PATHWAY Alpha6 beta4 integrin-ligand interactions
0.0 0.3 SA REG CASCADE OF CYCLIN EXPR Expression of cyclins regulates progression through the cell cycle by activating cyclin-dependent kinases.

Gene overrepresentation in C2:CP:REACTOME category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 1.8 REACTOME INHIBITION OF VOLTAGE GATED CA2 CHANNELS VIA GBETA GAMMA SUBUNITS Genes involved in Inhibition of voltage gated Ca2+ channels via Gbeta/gamma subunits
0.0 0.2 REACTOME SLBP DEPENDENT PROCESSING OF REPLICATION DEPENDENT HISTONE PRE MRNAS Genes involved in SLBP Dependent Processing of Replication-Dependent Histone Pre-mRNAs