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A549 cells infected with RSV Analysis Results (GEO series: GSE147507)

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Results for HOXA4

Z-value: 0.43

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Transcription factors associated with HOXA4

Gene Symbol Gene ID Gene Info
HOXA4
ENSG00000197576.9 homeobox A4

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
HOXA4hg19_v2_chr7_-_27169801_271698440.514.9e-01Click!

Activity profile of HOXA4 motif

Sorted Z-values of HOXA4 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
chr9_-_3469181 0.35 ENST00000366116.2
AL365202.1
Uncharacterized protein
chr10_-_92681033 0.30 ENST00000371697.3
ANKRD1
ankyrin repeat domain 1 (cardiac muscle)
chr2_-_187367356 0.29 ENST00000595956.1
AC018867.2
AC018867.2
chr1_+_28586006 0.25 ENST00000253063.3
SESN2
sestrin 2
chr10_-_101825151 0.22 ENST00000441382.1
CPN1
carboxypeptidase N, polypeptide 1
chr21_+_17961006 0.20 ENST00000602323.1
LINC00478
long intergenic non-protein coding RNA 478
chr20_-_45976816 0.19 ENST00000441977.1
ZMYND8
zinc finger, MYND-type containing 8
chr21_+_17909594 0.17 ENST00000441820.1
ENST00000602280.1
LINC00478
long intergenic non-protein coding RNA 478
chr18_+_42260059 0.15 ENST00000426838.4
SETBP1
SET binding protein 1
chrX_+_37639302 0.13 ENST00000545017.1
ENST00000536160.1
CYBB
cytochrome b-245, beta polypeptide
chr19_+_45409011 0.13 ENST00000252486.4
ENST00000446996.1
ENST00000434152.1
APOE
apolipoprotein E
chr14_+_38065052 0.13 ENST00000556845.1
TTC6
tetratricopeptide repeat domain 6
chr14_-_83262540 0.13 ENST00000554451.1
RP11-11K13.1
RP11-11K13.1
chr1_-_204329013 0.13 ENST00000272203.3
ENST00000414478.1
PLEKHA6
pleckstrin homology domain containing, family A member 6
chr3_-_52486841 0.12 ENST00000496590.1
TNNC1
troponin C type 1 (slow)
chr2_+_171571827 0.12 ENST00000375281.3
SP5
Sp5 transcription factor
chr5_+_60933634 0.12 ENST00000505642.1
C5orf64
chromosome 5 open reading frame 64
chr5_+_49962495 0.12 ENST00000515175.1
PARP8
poly (ADP-ribose) polymerase family, member 8
chr17_+_37894570 0.11 ENST00000394211.3
GRB7
growth factor receptor-bound protein 7
chr5_+_49962772 0.11 ENST00000281631.5
ENST00000513738.1
ENST00000503665.1
ENST00000514067.2
ENST00000503046.1
PARP8
poly (ADP-ribose) polymerase family, member 8
chr20_+_53092232 0.11 ENST00000395939.1
DOK5
docking protein 5
chr5_+_66254698 0.11 ENST00000405643.1
ENST00000407621.1
ENST00000432426.1
MAST4
microtubule associated serine/threonine kinase family member 4
chrX_+_129473859 0.10 ENST00000424447.1
SLC25A14
solute carrier family 25 (mitochondrial carrier, brain), member 14
chr11_+_112046190 0.10 ENST00000357685.5
ENST00000393032.2
ENST00000361053.4
BCO2
beta-carotene oxygenase 2
chr12_+_54447637 0.10 ENST00000609810.1
ENST00000430889.2
HOXC4
HOXC4
homeobox C4
Homeobox protein Hox-C4
chr16_+_57728701 0.10 ENST00000569375.1
ENST00000360716.3
ENST00000569167.1
ENST00000394337.4
ENST00000563126.1
ENST00000336825.8
CCDC135
coiled-coil domain containing 135
chr10_+_77056134 0.09 ENST00000528121.1
ENST00000416398.1
ZNF503-AS1
ZNF503 antisense RNA 1
chr20_+_53092123 0.09 ENST00000262593.5
DOK5
docking protein 5
chr15_+_86087267 0.09 ENST00000558166.1
AKAP13
A kinase (PRKA) anchor protein 13
chr12_+_72058130 0.09 ENST00000547843.1
THAP2
THAP domain containing, apoptosis associated protein 2
chr2_+_177015950 0.09 ENST00000306324.3
HOXD4
homeobox D4
chr7_-_27170352 0.08 ENST00000428284.2
ENST00000360046.5
HOXA4
homeobox A4
chr15_+_75080883 0.08 ENST00000567571.1
CSK
c-src tyrosine kinase
chr6_-_26235206 0.07 ENST00000244534.5
HIST1H1D
histone cluster 1, H1d
chr9_+_26746951 0.07 ENST00000523363.1
RP11-18A15.1
RP11-18A15.1
chr18_-_658244 0.07 ENST00000585033.1
ENST00000323813.3
C18orf56
chromosome 18 open reading frame 56
chrX_-_84634737 0.07 ENST00000262753.4
POF1B
premature ovarian failure, 1B
chr5_+_133562095 0.07 ENST00000602919.1
CTD-2410N18.3
CTD-2410N18.3
chr6_+_63921351 0.07 ENST00000370659.1
FKBP1C
FK506 binding protein 1C
chr11_-_27494279 0.07 ENST00000379214.4
LGR4
leucine-rich repeat containing G protein-coupled receptor 4
chrX_+_37639264 0.07 ENST00000378588.4
CYBB
cytochrome b-245, beta polypeptide
chr12_+_29376673 0.07 ENST00000547116.1
FAR2
fatty acyl CoA reductase 2
chr21_+_17443521 0.06 ENST00000456342.1
LINC00478
long intergenic non-protein coding RNA 478
chr1_-_108231101 0.06 ENST00000544443.1
ENST00000415432.2
VAV3
vav 3 guanine nucleotide exchange factor
chr3_+_69134124 0.06 ENST00000478935.1
ARL6IP5
ADP-ribosylation-like factor 6 interacting protein 5
chr10_-_106240032 0.06 ENST00000447860.1
RP11-127O4.3
RP11-127O4.3
chr11_-_27494309 0.06 ENST00000389858.4
LGR4
leucine-rich repeat containing G protein-coupled receptor 4
chr3_-_64253655 0.06 ENST00000498162.1
PRICKLE2
prickle homolog 2 (Drosophila)
chr12_+_29376592 0.06 ENST00000182377.4
FAR2
fatty acyl CoA reductase 2
chr9_-_113342160 0.06 ENST00000401783.2
ENST00000374461.1
SVEP1
sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1
chr18_-_24128496 0.06 ENST00000417602.1
KCTD1
potassium channel tetramerization domain containing 1
chr12_-_68845165 0.05 ENST00000360485.3
ENST00000441255.2
RP11-81H14.2
RP11-81H14.2
chr2_-_43453734 0.05 ENST00000282388.3
ZFP36L2
ZFP36 ring finger protein-like 2
chr21_+_17443434 0.05 ENST00000400178.2
LINC00478
long intergenic non-protein coding RNA 478
chr17_+_54230819 0.05 ENST00000318698.2
ENST00000566473.2
ANKFN1
ankyrin-repeat and fibronectin type III domain containing 1
chr17_-_67138015 0.05 ENST00000284425.2
ENST00000590645.1
ABCA6
ATP-binding cassette, sub-family A (ABC1), member 6
chr19_-_42806919 0.05 ENST00000595530.1
ENST00000538771.1
ENST00000601865.1
PAFAH1B3
platelet-activating factor acetylhydrolase 1b, catalytic subunit 3 (29kDa)
chr12_-_86650077 0.05 ENST00000552808.2
ENST00000547225.1
MGAT4C
mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme C (putative)
chr9_+_44867571 0.05 ENST00000377548.2
RP11-160N1.10
RP11-160N1.10
chr14_-_80697396 0.04 ENST00000557010.1
DIO2
deiodinase, iodothyronine, type II
chr3_-_120400960 0.04 ENST00000476082.2
HGD
homogentisate 1,2-dioxygenase
chr5_+_66300464 0.04 ENST00000436277.1
MAST4
microtubule associated serine/threonine kinase family member 4
chr14_+_39734482 0.04 ENST00000554392.1
ENST00000555716.1
ENST00000341749.3
ENST00000557038.1
CTAGE5
CTAGE family, member 5
chr12_+_53848549 0.04 ENST00000439930.3
ENST00000548933.1
ENST00000562264.1
PCBP2
poly(rC) binding protein 2
chr3_+_9774164 0.04 ENST00000426583.1
BRPF1
bromodomain and PHD finger containing, 1
chr9_-_113761720 0.04 ENST00000541779.1
ENST00000374430.2
LPAR1
lysophosphatidic acid receptor 1
chr9_-_113341985 0.04 ENST00000374469.1
SVEP1
sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1
chr5_-_38557561 0.04 ENST00000511561.1
LIFR
leukemia inhibitory factor receptor alpha
chr1_+_26348259 0.04 ENST00000374280.3
EXTL1
exostosin-like glycosyltransferase 1
chr12_-_120241187 0.04 ENST00000392520.2
CIT
citron (rho-interacting, serine/threonine kinase 21)
chr5_+_159343688 0.03 ENST00000306675.3
ADRA1B
adrenoceptor alpha 1B
chrM_+_5824 0.03 ENST00000361624.2
MT-CO1
mitochondrially encoded cytochrome c oxidase I
chr15_-_33447055 0.03 ENST00000559047.1
ENST00000561249.1
FMN1
formin 1
chr12_+_53848505 0.03 ENST00000552819.1
ENST00000455667.3
PCBP2
poly(rC) binding protein 2
chr6_+_31514622 0.03 ENST00000376146.4
NFKBIL1
nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor-like 1
chrX_+_123097014 0.03 ENST00000394478.1
STAG2
stromal antigen 2
chr8_+_22424551 0.03 ENST00000523348.1
SORBS3
sorbin and SH3 domain containing 3
chr2_+_53994927 0.03 ENST00000295304.4
CHAC2
ChaC, cation transport regulator homolog 2 (E. coli)
chr12_-_57037284 0.03 ENST00000551570.1
ATP5B
ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide
chr18_-_21017817 0.03 ENST00000542162.1
ENST00000383233.3
ENST00000582336.1
ENST00000450466.2
ENST00000578520.1
ENST00000399707.1
TMEM241
transmembrane protein 241
chr10_-_105845536 0.03 ENST00000393211.3
COL17A1
collagen, type XVII, alpha 1
chr10_-_105845674 0.03 ENST00000353479.5
ENST00000369733.3
COL17A1
collagen, type XVII, alpha 1
chr11_+_120971882 0.03 ENST00000392793.1
TECTA
tectorin alpha
chr21_+_17442799 0.03 ENST00000602580.1
ENST00000458468.1
ENST00000602935.1
LINC00478
long intergenic non-protein coding RNA 478
chr7_+_141418962 0.03 ENST00000493845.1
WEE2
WEE1 homolog 2 (S. pombe)
chrX_+_149867681 0.03 ENST00000438018.1
ENST00000436701.1
MTMR1
myotubularin related protein 1
chr14_+_45605127 0.02 ENST00000556036.1
ENST00000267430.5
FANCM
Fanconi anemia, complementation group M
chr5_+_140535577 0.02 ENST00000539533.1
PCDHB17
Protocadherin-psi1; Uncharacterized protein
chr8_+_77593474 0.02 ENST00000455469.2
ENST00000050961.6
ZFHX4
zinc finger homeobox 4
chr5_+_69321074 0.02 ENST00000380751.5
ENST00000380750.3
ENST00000503931.1
ENST00000506542.1
SERF1B
small EDRK-rich factor 1B (centromeric)
chr22_+_26138108 0.02 ENST00000536101.1
ENST00000335473.7
ENST00000407587.2
MYO18B
myosin XVIIIB
chr4_-_66536057 0.02 ENST00000273854.3
EPHA5
EPH receptor A5
chr7_-_140714430 0.02 ENST00000393008.3
MRPS33
mitochondrial ribosomal protein S33
chr1_-_156460391 0.02 ENST00000360595.3
MEF2D
myocyte enhancer factor 2D
chr2_-_163100045 0.02 ENST00000188790.4
FAP
fibroblast activation protein, alpha
chr8_+_77593448 0.02 ENST00000521891.2
ZFHX4
zinc finger homeobox 4
chr20_+_32150140 0.02 ENST00000344201.3
ENST00000346541.3
ENST00000397800.1
ENST00000397798.2
ENST00000492345.1
CBFA2T2
core-binding factor, runt domain, alpha subunit 2; translocated to, 2
chr6_-_116447283 0.02 ENST00000452729.1
ENST00000243222.4
COL10A1
collagen, type X, alpha 1
chr18_-_53019208 0.02 ENST00000562607.1
TCF4
transcription factor 4
chr2_-_180427304 0.02 ENST00000336917.5
ZNF385B
zinc finger protein 385B
chr18_-_28742813 0.02 ENST00000257197.3
ENST00000257198.5
DSC1
desmocollin 1
chrX_-_55024967 0.02 ENST00000545676.1
PFKFB1
6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1
chr18_-_53089723 0.01 ENST00000561992.1
ENST00000562512.2
TCF4
transcription factor 4
chr19_-_1021113 0.01 ENST00000333175.5
ENST00000356663.3
TMEM259
transmembrane protein 259
chr4_-_185139062 0.01 ENST00000296741.2
ENPP6
ectonucleotide pyrophosphatase/phosphodiesterase 6
chr17_-_2117600 0.01 ENST00000572369.1
SMG6
SMG6 nonsense mediated mRNA decay factor
chr5_+_140810132 0.01 ENST00000252085.3
PCDHGA12
protocadherin gamma subfamily A, 12
chr19_-_51220176 0.01 ENST00000359082.3
ENST00000293441.1
SHANK1
SH3 and multiple ankyrin repeat domains 1
chr1_-_42384343 0.01 ENST00000372584.1
HIVEP3
human immunodeficiency virus type I enhancer binding protein 3
chr15_+_51669444 0.01 ENST00000396399.2
GLDN
gliomedin
chr11_+_128563948 0.01 ENST00000534087.2
FLI1
Fli-1 proto-oncogene, ETS transcription factor
chr20_+_57464200 0.01 ENST00000604005.1
GNAS
GNAS complex locus
chr3_-_57233966 0.01 ENST00000473921.1
ENST00000295934.3
HESX1
HESX homeobox 1
chr12_+_106976678 0.01 ENST00000392842.1
RFX4
regulatory factor X, 4 (influences HLA class II expression)
chr10_-_62332357 0.01 ENST00000503366.1
ANK3
ankyrin 3, node of Ranvier (ankyrin G)
chr14_+_45605157 0.01 ENST00000542564.2
FANCM
Fanconi anemia, complementation group M
chr7_+_18330035 0.01 ENST00000413509.2
HDAC9
histone deacetylase 9
chr6_+_100054606 0.01 ENST00000369215.4
PRDM13
PR domain containing 13
chr2_+_39117010 0.01 ENST00000409978.1
ARHGEF33
Rho guanine nucleotide exchange factor (GEF) 33
chr5_+_67586465 0.01 ENST00000336483.5
PIK3R1
phosphoinositide-3-kinase, regulatory subunit 1 (alpha)
chr14_+_37131058 0.01 ENST00000361487.6
PAX9
paired box 9
chr3_+_122103014 0.01 ENST00000232125.5
ENST00000477892.1
ENST00000469967.1
FAM162A
family with sequence similarity 162, member A
chr4_-_41884582 0.01 ENST00000499082.2
LINC00682
long intergenic non-protein coding RNA 682
chr1_-_216978709 0.01 ENST00000360012.3
ESRRG
estrogen-related receptor gamma
chr7_-_130598059 0.01 ENST00000432045.2
MIR29B1
microRNA 29a
chr19_-_10047219 0.01 ENST00000264833.4
OLFM2
olfactomedin 2
chr5_+_152870734 0.01 ENST00000521843.2
GRIA1
glutamate receptor, ionotropic, AMPA 1
chr14_+_59100774 0.01 ENST00000556859.1
ENST00000421793.1
DACT1
dishevelled-binding antagonist of beta-catenin 1
chr14_-_54423529 0.01 ENST00000245451.4
ENST00000559087.1
BMP4
bone morphogenetic protein 4
chr4_-_66536196 0.01 ENST00000511294.1
EPHA5
EPH receptor A5
chr10_+_11047259 0.00 ENST00000379261.4
ENST00000416382.2
CELF2
CUGBP, Elav-like family member 2
chr1_+_151739131 0.00 ENST00000400999.1
OAZ3
ornithine decarboxylase antizyme 3
chr1_+_160160283 0.00 ENST00000368079.3
CASQ1
calsequestrin 1 (fast-twitch, skeletal muscle)
chr18_-_56985776 0.00 ENST00000587244.1
CPLX4
complexin 4
chr8_+_79503458 0.00 ENST00000518467.1
PKIA
protein kinase (cAMP-dependent, catalytic) inhibitor alpha
chr9_+_87284622 0.00 ENST00000395882.1
NTRK2
neurotrophic tyrosine kinase, receptor, type 2
chr9_+_87284675 0.00 ENST00000376208.1
ENST00000304053.6
ENST00000277120.3
NTRK2
neurotrophic tyrosine kinase, receptor, type 2
chr1_+_214161272 0.00 ENST00000498508.2
ENST00000366958.4
PROX1
prospero homeobox 1
chr11_+_22688150 0.00 ENST00000454584.2
GAS2
growth arrest-specific 2
chr1_-_159832438 0.00 ENST00000368100.1
VSIG8
V-set and immunoglobulin domain containing 8
chr17_+_73452545 0.00 ENST00000314256.7
KIAA0195
KIAA0195
chr2_+_128403439 0.00 ENST00000544369.1
GPR17
G protein-coupled receptor 17
chr5_+_40909354 0.00 ENST00000313164.9
C7
complement component 7
chr1_+_160160346 0.00 ENST00000368078.3
CASQ1
calsequestrin 1 (fast-twitch, skeletal muscle)
chr7_+_95115210 0.00 ENST00000428113.1
ENST00000325885.5
ASB4
ankyrin repeat and SOCS box containing 4
chr1_+_155658849 0.00 ENST00000368336.5
ENST00000343043.3
ENST00000421487.2
ENST00000535183.1
ENST00000465375.1
ENST00000470830.1
DAP3
death associated protein 3

Network of associatons between targets according to the STRING database.

First level regulatory network of HOXA4

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological_process category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.2 GO:0030070 insulin processing(GO:0030070)
0.1 0.2 GO:0090526 regulation of gluconeogenesis involved in cellular glucose homeostasis(GO:0090526)
0.0 0.1 GO:2000646 lipid transport involved in lipid storage(GO:0010877) positive regulation of receptor catabolic process(GO:2000646)
0.0 0.2 GO:1904844 response to L-glutamine(GO:1904844) cellular response to L-glutamine(GO:1904845)
0.0 0.1 GO:0061289 cell-cell signaling involved in kidney development(GO:0060995) Wnt signaling pathway involved in kidney development(GO:0061289) canonical Wnt signaling pathway involved in metanephric kidney development(GO:0061290) cell-cell signaling involved in metanephros development(GO:0072204)
0.0 0.1 GO:0032972 regulation of muscle filament sliding speed(GO:0032972)
0.0 0.2 GO:1902952 positive regulation of dendritic spine maintenance(GO:1902952)
0.0 0.1 GO:0010166 wax biosynthetic process(GO:0010025) wax metabolic process(GO:0010166)
0.0 0.1 GO:1900169 regulation of glucocorticoid mediated signaling pathway(GO:1900169)
0.0 0.2 GO:0051386 regulation of neurotrophin TRK receptor signaling pathway(GO:0051386)
0.0 0.3 GO:0043517 positive regulation of DNA damage response, signal transduction by p53 class mediator(GO:0043517)

Gene overrepresentation in cellular_component category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.1 GO:0034365 discoidal high-density lipoprotein particle(GO:0034365)
0.0 0.1 GO:1990584 cardiac Troponin complex(GO:1990584)
0.0 0.2 GO:1990316 ATG1/ULK1 kinase complex(GO:1990316)
0.0 0.2 GO:0043020 NADPH oxidase complex(GO:0043020)
0.0 0.0 GO:0071821 FANCM-MHF complex(GO:0071821)

Gene overrepresentation in molecular_function category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.3 GO:0061629 RNA polymerase II sequence-specific DNA binding transcription factor binding(GO:0061629)
0.0 0.2 GO:0070728 leucine binding(GO:0070728)
0.0 0.1 GO:0070326 very-low-density lipoprotein particle receptor binding(GO:0070326)
0.0 0.1 GO:0080019 fatty-acyl-CoA reductase (alcohol-forming) activity(GO:0080019)
0.0 0.1 GO:0031013 troponin I binding(GO:0031013)
0.0 0.2 GO:0016175 superoxide-generating NADPH oxidase activity(GO:0016175)