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A549 cells infected with RSV Analysis Results (GEO series: GSE147507)

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Results for MSX2

Z-value: 0.73

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Transcription factors associated with MSX2

Gene Symbol Gene ID Gene Info
ENSG00000120149.7 msh homeobox 2

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
MSX2hg19_v2_chr5_+_174151536_1741516100.703.0e-01Click!

Activity profile of MSX2 motif

Sorted Z-values of MSX2 motif

Promoter Log-likelihood Transcript Gene Gene Info
chr15_+_41245160 0.89 ENST00000444189.2
ENST00000446533.3
ChaC, cation transport regulator homolog 1 (E. coli)
chr17_+_74261413 0.54 ENST00000587913.1
UBA-like domain containing 2
chr17_-_43045439 0.50 ENST00000253407.3
complement component 1, q subcomponent-like 1
chr1_-_228613026 0.41 ENST00000366696.1
histone cluster 3, H3
chr7_+_100209979 0.36 ENST00000493970.1
ENST00000379527.2
motile sperm domain containing 3
chr15_+_80351910 0.35 ENST00000261749.6
ENST00000561060.1
zinc finger, AN1-type domain 6
chr17_+_74261277 0.34 ENST00000327490.6
UBA-like domain containing 2
chr19_+_4007644 0.34 ENST00000262971.2
protein inhibitor of activated STAT, 4
chr12_-_10022735 0.34 ENST00000228438.2
C-type lectin domain family 2, member B
chr7_+_100210133 0.33 ENST00000393950.2
ENST00000424091.2
motile sperm domain containing 3
chr7_+_130794846 0.33 ENST00000421797.2
muskelin 1, intracellular mediator containing kelch motifs
chr7_+_100209725 0.32 ENST00000223054.4
motile sperm domain containing 3
chr18_+_39535239 0.32 ENST00000585528.1
phosphatidylinositol 3-kinase, catalytic subunit type 3
chr12_+_52695617 0.31 ENST00000293525.5
keratin 86
chr22_+_46476192 0.29 ENST00000443490.1
hsa-mir-4763
chr7_-_100183742 0.28 ENST00000310300.6
leucine-rich repeats and calponin homology (CH) domain containing 4
chr20_+_54967663 0.27 ENST00000452950.1
cleavage stimulation factor, 3' pre-RNA, subunit 1, 50kDa
chr22_-_30960876 0.25 ENST00000401975.1
ENST00000428682.1
ENST00000423299.1
galactose-3-O-sulfotransferase 1
chr12_-_9102224 0.23 ENST00000543845.1
ENST00000544245.1
mannose-6-phosphate receptor (cation dependent)
chr3_-_48672859 0.23 ENST00000395550.2
ENST00000455886.2
ENST00000431739.1
ENST00000426599.1
ENST00000383733.3
ENST00000420764.2
ENST00000337000.8
solute carrier family 26 (anion exchanger), member 6
chr3_+_113251143 0.21 ENST00000264852.4
ENST00000393830.3
SID1 transmembrane family, member 1
chr14_-_95236551 0.20 ENST00000238558.3
goosecoid homeobox
chr11_+_17298543 0.20 ENST00000533926.1
nucleobindin 2
chr7_+_130794878 0.19 ENST00000416992.2
muskelin 1, intracellular mediator containing kelch motifs
chr4_-_171012844 0.19 ENST00000502392.1
aminoadipate aminotransferase
chr20_+_54967409 0.18 ENST00000415828.1
ENST00000217109.4
ENST00000428552.1
cleavage stimulation factor, 3' pre-RNA, subunit 1, 50kDa
chr19_+_42817450 0.18 ENST00000301204.3
transmembrane protein 145
chr16_-_18923035 0.17 ENST00000563836.1
SMG1 phosphatidylinositol 3-kinase-related kinase
chr9_+_34646624 0.17 ENST00000450095.2
ENST00000556278.1
galactose-1-phosphate uridylyltransferase
Uncharacterized protein
chr1_-_68698222 0.17 ENST00000370976.3
ENST00000354777.2
ENST00000262348.4
ENST00000540432.1
wntless Wnt ligand secretion mediator
chr6_-_167040731 0.17 ENST00000265678.4
ribosomal protein S6 kinase, 90kDa, polypeptide 2
chr1_-_94050668 0.17 ENST00000539242.1
breast cancer anti-estrogen resistance 3
chr19_+_42817527 0.16 ENST00000598766.1
transmembrane protein 145
chr17_+_12569472 0.16 ENST00000343344.4
myocardin
chr20_+_49126881 0.16 ENST00000371621.3
ENST00000541713.1
protein tyrosine phosphatase, non-receptor type 1
chr1_-_36916066 0.15 ENST00000315643.9
organic solute carrier partner 1
chr16_-_29934558 0.15 ENST00000568995.1
ENST00000566413.1
potassium channel tetramerization domain containing 13
chr1_-_68698197 0.15 ENST00000370973.2
ENST00000370971.1
wntless Wnt ligand secretion mediator
chr19_+_46236509 0.15 ENST00000457052.2
Uncharacterized protein
chrX_-_48931648 0.15 ENST00000376386.3
ENST00000376390.4
PRA1 domain family, member 2
chr14_-_88200641 0.14 ENST00000556168.1
RP11-1152H15.1
chr5_+_31532373 0.14 ENST00000325366.9
ENST00000355907.3
ENST00000507818.2
chromosome 5 open reading frame 22
chr11_+_17298255 0.14 ENST00000531172.1
ENST00000533738.2
ENST00000323688.6
nucleobindin 2
chr11_+_17298522 0.14 ENST00000529313.1
nucleobindin 2
chr10_-_28571015 0.13 ENST00000375719.3
ENST00000375732.1
membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)
chr6_+_34204642 0.13 ENST00000347617.6
ENST00000401473.3
ENST00000311487.5
ENST00000447654.1
ENST00000395004.3
high mobility group AT-hook 1
chr17_+_12569306 0.13 ENST00000425538.1
myocardin
chr8_+_9413410 0.13 ENST00000520408.1
ENST00000310430.6
ENST00000522110.1
tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase
chr1_-_47779762 0.12 ENST00000371877.3
ENST00000360380.3
ENST00000337817.5
ENST00000447475.2
SCL/TAL1 interrupting locus
chr9_+_74729511 0.12 ENST00000545168.1
guanine deaminase
chr12_+_64798826 0.12 ENST00000540203.1
exportin, tRNA
chr3_-_11685345 0.12 ENST00000430365.2
vestigial like 4 (Drosophila)
chrX_+_70752945 0.12 ENST00000373701.3
O-linked N-acetylglucosamine (GlcNAc) transferase
chr8_+_92261516 0.12 ENST00000276609.3
ENST00000309536.2
solute carrier family 26 (anion exchanger), member 7
chr18_+_63273310 0.12 ENST00000579862.1
RP11-775G23.1
chr11_+_17298297 0.12 ENST00000529010.1
nucleobindin 2
chr6_-_167040693 0.11 ENST00000366863.2
ribosomal protein S6 kinase, 90kDa, polypeptide 2
chr9_-_4666421 0.10 ENST00000381895.5
spermatogenesis associated 6-like
chr1_-_8877692 0.10 ENST00000400908.2
arginine-glutamic acid dipeptide (RE) repeats
chr1_-_190446759 0.09 ENST00000367462.3
bone morphogenetic protein/retinoic acid inducible neural-specific 3
chr12_+_54718904 0.09 ENST00000262061.2
ENST00000549043.1
ENST00000552218.1
ENST00000553231.1
ENST00000552362.1
ENST00000455864.2
ENST00000416254.2
ENST00000549116.1
ENST00000551779.1
coatomer protein complex, subunit zeta 1
chr12_+_117099342 0.09 ENST00000546835.1
RP11-497G19.1
chr3_+_129247479 0.09 ENST00000296271.3
rhodopsin
chr2_-_200335983 0.09 ENST00000457245.1
SATB homeobox 2
chr1_-_151431909 0.08 ENST00000361398.3
ENST00000271715.2
pogo transposable element with ZNF domain
chr18_+_39535152 0.08 ENST00000262039.4
ENST00000398870.3
ENST00000586545.1
phosphatidylinositol 3-kinase, catalytic subunit type 3
chr21_-_22175341 0.08 ENST00000416768.1
ENST00000452561.1
ENST00000419299.1
ENST00000437238.1
long intergenic non-protein coding RNA 320
chrX_-_15332665 0.08 ENST00000537676.1
ENST00000344384.4
ankyrin repeat and SOCS box containing 11
chr7_-_56174161 0.08 ENST00000395422.3
coiled-coil-helix-coiled-coil-helix domain containing 2
chr11_-_121986923 0.08 ENST00000560104.1
BH3-like motif containing, cell death inducer
chr14_+_65381079 0.08 ENST00000549115.1
ENST00000607599.1
ENST00000548752.2
ENST00000359118.2
ENST00000552002.2
ENST00000551947.1
ENST00000551093.1
ENST00000542227.1
ENST00000447296.2
ENST00000549987.1
churchill domain containing 1
farnesyltransferase, CAAX box, beta
CHURC1-FNTB readthrough
chr17_-_9929581 0.07 ENST00000437099.2
ENST00000396115.2
growth arrest-specific 7
chr4_+_71587669 0.07 ENST00000381006.3
ENST00000226328.4
RUN and FYVE domain containing 3
chr1_+_44115814 0.07 ENST00000372396.3
lysine (K)-specific demethylase 4A
chr7_+_134331550 0.07 ENST00000344924.3
ENST00000418040.1
ENST00000393132.2
2,3-bisphosphoglycerate mutase
chr14_+_32798462 0.07 ENST00000280979.4
A kinase (PRKA) anchor protein 6
chr17_-_80250663 0.07 ENST00000581489.1
RP13-516M14.4
chr1_+_11714914 0.07 ENST00000425796.1
ENST00000376770.1
ENST00000376768.1
ENST00000251547.5
ENST00000376760.1
ENST00000376762.4
F-box protein 44
chr6_+_53948328 0.06 ENST00000370876.2
muscular LMNA-interacting protein
chr1_-_151431674 0.06 ENST00000531094.1
pogo transposable element with ZNF domain
chr1_-_232651312 0.06 ENST00000262861.4
signal-induced proliferation-associated 1 like 2
chr20_-_50419055 0.05 ENST00000217086.4
spalt-like transcription factor 4
chr2_-_55646957 0.05 ENST00000263630.8
coiled-coil domain containing 88A
chr13_-_103389159 0.05 ENST00000322527.2
coiled-coil domain containing 168
chr11_+_33061543 0.05 ENST00000432887.1
ENST00000528898.1
ENST00000531632.2
t-complex 11, testis-specific-like 1
chr11_+_108535752 0.05 ENST00000322536.3
DEAD (Asp-Glu-Ala-Asp) box polypeptide 10
chr17_-_12920907 0.05 ENST00000609757.1
ENST00000581499.2
ENST00000580504.1
elaC ribonuclease Z 2
chr10_-_56561022 0.05 ENST00000373965.2
ENST00000414778.1
ENST00000395438.1
ENST00000409834.1
ENST00000395445.1
ENST00000395446.1
ENST00000395442.1
ENST00000395440.1
ENST00000395432.2
ENST00000361849.3
ENST00000395433.1
ENST00000320301.6
ENST00000395430.1
ENST00000437009.1
protocadherin-related 15
chr7_-_99716914 0.05 ENST00000431404.2
TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa
chr9_+_34646651 0.05 ENST00000378842.3
galactose-1-phosphate uridylyltransferase
chr2_-_55647057 0.05 ENST00000436346.1
coiled-coil domain containing 88A
chr11_-_124981475 0.05 ENST00000532156.1
ENST00000532407.1
ENST00000279968.4
ENST00000527766.1
ENST00000529583.1
ENST00000524373.1
ENST00000527271.1
ENST00000526175.1
ENST00000529609.1
ENST00000533273.1
ENST00000531909.1
ENST00000529530.1
transmembrane protein 218
chr20_+_30467600 0.05 ENST00000375934.4
ENST00000375922.4
tubulin tyrosine ligase-like family, member 9
chr1_-_158173659 0.05 ENST00000415019.1
RP11-404O13.5
chr3_-_141747950 0.05 ENST00000497579.1
transcription factor Dp-2 (E2F dimerization partner 2)
chr1_+_175036966 0.05 ENST00000239462.4
tenascin N
chr8_+_1993152 0.04 ENST00000262113.4
myomesin 2
chr12_-_95397442 0.04 ENST00000547157.1
ENST00000547986.1
ENST00000327772.2
NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12
chr10_-_99205607 0.04 ENST00000477692.2
ENST00000485122.2
ENST00000370886.5
ENST00000370885.4
ENST00000370902.3
ENST00000370884.5
exosome component 1
chr7_-_99716952 0.04 ENST00000523306.1
ENST00000344095.4
ENST00000417349.1
ENST00000493322.1
ENST00000520135.1
ENST00000418432.2
ENST00000460673.2
ENST00000452041.1
ENST00000452438.2
ENST00000451699.1
ENST00000453269.2
TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa
chr11_+_67250490 0.04 ENST00000528641.2
ENST00000279146.3
aryl hydrocarbon receptor interacting protein
chr11_+_17298342 0.04 ENST00000530964.1
nucleobindin 2
chr11_+_101918153 0.04 ENST00000434758.2
ENST00000526781.1
ENST00000534360.1
chromosome 11 open reading frame 70
chr1_-_36915880 0.03 ENST00000445843.3
organic solute carrier partner 1
chr7_-_2883928 0.03 ENST00000275364.3
guanine nucleotide binding protein (G protein) alpha 12
chr19_-_19249255 0.03 ENST00000587583.2
ENST00000450333.2
ENST00000587096.1
ENST00000162044.9
ENST00000592369.1
ENST00000587915.1
transmembrane protein 161A
chr1_+_151735431 0.03 ENST00000321531.5
ENST00000315067.8
ornithine decarboxylase antizyme 3
chr3_-_120003941 0.03 ENST00000464295.1
G protein-coupled receptor 156
chr7_-_2883650 0.03 ENST00000544127.1
guanine nucleotide binding protein (G protein) alpha 12
chr8_+_1993173 0.03 ENST00000523438.1
myomesin 2
chr7_-_99716940 0.03 ENST00000440225.1
TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa
chr1_-_21377383 0.02 ENST00000374935.3
eukaryotic translation initiation factor 4 gamma, 3
chr14_-_23504337 0.02 ENST00000361611.6
proteasome (prosome, macropain) subunit, beta type, 5
chr6_-_116833500 0.02 ENST00000356128.4
trafficking protein particle complex 3-like
chr5_+_140557371 0.02 ENST00000239444.2
protocadherin beta 8
chrX_+_70752917 0.02 ENST00000373719.3
O-linked N-acetylglucosamine (GlcNAc) transferase
chr22_+_17956618 0.02 ENST00000262608.8
cat eye syndrome chromosome region, candidate 2
chr11_+_108535849 0.02 ENST00000526794.1
DEAD (Asp-Glu-Ala-Asp) box polypeptide 10
chr8_-_117886612 0.01 ENST00000520992.1
RAD21 homolog (S. pombe)
chr1_-_151762943 0.01 ENST00000368825.3
ENST00000368823.1
ENST00000458431.2
ENST00000368827.6
ENST00000368824.3
tudor and KH domain containing
chr5_-_31532238 0.01 ENST00000507438.1
drosha, ribonuclease type III
chr1_+_244515930 0.01 ENST00000366537.1
ENST00000308105.4
chromosome 1 open reading frame 100
chr1_+_202317815 0.01 ENST00000608999.1
ENST00000336894.4
ENST00000480184.1
protein phosphatase 1, regulatory subunit 12B
chr20_-_50418947 0.01 ENST00000371539.3
spalt-like transcription factor 4
chr7_-_99717463 0.00 ENST00000437822.2
TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa
chr1_-_151431647 0.00 ENST00000368863.2
ENST00000409503.1
ENST00000491586.1
ENST00000533351.1
ENST00000540984.1
pogo transposable element with ZNF domain
chr17_-_46716647 0.00 ENST00000608940.1
RP11-357H14.17
chrX_-_21676442 0.00 ENST00000379499.2
kelch-like family member 34

Network of associatons between targets according to the STRING database.

First level regulatory network of MSX2

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological_process category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 0.5 GO:0061743 motor learning(GO:0061743) maintenance of synapse structure(GO:0099558)
0.1 0.3 GO:0061357 positive regulation of Wnt protein secretion(GO:0061357)
0.1 0.2 GO:0042938 dipeptide transport(GO:0042938)
0.1 0.2 GO:0006258 UDP-glucose catabolic process(GO:0006258)
0.1 0.3 GO:0001560 regulation of cell growth by extracellular stimulus(GO:0001560)
0.1 0.2 GO:2000646 positive regulation of receptor catabolic process(GO:2000646)
0.0 0.3 GO:1902231 positive regulation of keratinocyte apoptotic process(GO:1902174) positive regulation of intrinsic apoptotic signaling pathway in response to DNA damage(GO:1902231)
0.0 0.9 GO:0006751 glutathione catabolic process(GO:0006751)
0.0 0.4 GO:0030242 pexophagy(GO:0030242)
0.0 0.1 GO:0006147 guanine catabolic process(GO:0006147)
0.0 0.1 GO:0090526 regulation of gluconeogenesis involved in cellular glucose homeostasis(GO:0090526)
0.0 0.2 GO:0033512 L-lysine catabolic process to acetyl-CoA via saccharopine(GO:0033512) L-kynurenine metabolic process(GO:0097052)
0.0 0.1 GO:0090402 senescence-associated heterochromatin focus assembly(GO:0035986) oncogene-induced cell senescence(GO:0090402)
0.0 0.1 GO:1903566 positive regulation of protein localization to cilium(GO:1903566)
0.0 0.1 GO:0070213 protein auto-ADP-ribosylation(GO:0070213)
0.0 0.3 GO:0006682 galactosylceramide biosynthetic process(GO:0006682) galactolipid biosynthetic process(GO:0019375)
0.0 0.1 GO:0043456 regulation of pentose-phosphate shunt(GO:0043456)
0.0 0.1 GO:0072684 mitochondrial tRNA 3'-trailer cleavage, endonucleolytic(GO:0072684)
0.0 0.2 GO:0033299 secretion of lysosomal enzymes(GO:0033299)
0.0 0.1 GO:0021691 cerebellar Purkinje cell layer maturation(GO:0021691)
0.0 0.1 GO:0033504 floor plate development(GO:0033504)
0.0 0.1 GO:0071896 protein localization to adherens junction(GO:0071896)
0.0 0.2 GO:0033227 dsRNA transport(GO:0033227)
0.0 0.1 GO:0018343 protein farnesylation(GO:0018343)
0.0 0.2 GO:0014029 neural crest formation(GO:0014029)
0.0 0.3 GO:0035090 maintenance of apical/basal cell polarity(GO:0035090) maintenance of epithelial cell apical/basal polarity(GO:0045199)
0.0 0.4 GO:0032460 negative regulation of protein oligomerization(GO:0032460)

Gene overrepresentation in cellular_component category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.4 GO:0044301 climbing fiber(GO:0044301)
0.1 0.4 GO:0034272 phosphatidylinositol 3-kinase complex, class III, type I(GO:0034271) phosphatidylinositol 3-kinase complex, class III, type II(GO:0034272)
0.0 0.4 GO:0000788 nuclear nucleosome(GO:0000788)
0.0 0.1 GO:0035985 senescence-associated heterochromatin focus(GO:0035985)
0.0 0.1 GO:0005965 protein farnesyltransferase complex(GO:0005965)
0.0 0.2 GO:0098554 cytoplasmic side of endoplasmic reticulum membrane(GO:0098554)
0.0 0.2 GO:0097225 sperm midpiece(GO:0097225)

Gene overrepresentation in molecular_function category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 0.9 GO:0003839 gamma-glutamylcyclotransferase activity(GO:0003839)
0.1 0.2 GO:0047536 2-aminoadipate transaminase activity(GO:0047536)
0.0 0.2 GO:0015563 uptake transmembrane transporter activity(GO:0015563)
0.0 0.1 GO:0008892 guanine deaminase activity(GO:0008892)
0.0 0.3 GO:0061665 SUMO ligase activity(GO:0061665)
0.0 0.2 GO:0051032 nucleic acid transmembrane transporter activity(GO:0051032) RNA transmembrane transporter activity(GO:0051033)
0.0 0.1 GO:0097363 protein O-GlcNAc transferase activity(GO:0097363)
0.0 0.3 GO:0031852 mu-type opioid receptor binding(GO:0031852)
0.0 0.3 GO:0050694 galactosylceramide sulfotransferase activity(GO:0001733) galactose 3-O-sulfotransferase activity(GO:0050694)
0.0 0.1 GO:0008267 poly-glutamine tract binding(GO:0008267)
0.0 0.1 GO:0004660 protein farnesyltransferase activity(GO:0004660)
0.0 0.1 GO:0046538 bisphosphoglycerate mutase activity(GO:0004082) phosphoglycerate mutase activity(GO:0004619) 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase activity(GO:0046538)
0.0 0.2 GO:0070569 uridylyltransferase activity(GO:0070569)
0.0 0.1 GO:0042781 3'-tRNA processing endoribonuclease activity(GO:0042781)
0.0 0.2 GO:0005537 mannose binding(GO:0005537)

Gene overrepresentation in C2:CP:REACTOME category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.4 REACTOME SYNTHESIS OF PIPS AT THE LATE ENDOSOME MEMBRANE Genes involved in Synthesis of PIPs at the late endosome membrane
0.0 0.5 REACTOME PROCESSING OF INTRONLESS PRE MRNAS Genes involved in Processing of Intronless Pre-mRNAs
0.0 0.1 REACTOME APOBEC3G MEDIATED RESISTANCE TO HIV1 INFECTION Genes involved in APOBEC3G mediated resistance to HIV-1 infection
0.0 0.1 REACTOME OPSINS Genes involved in Opsins