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A549 cells infected with SARS-CoV-2 Analysis Results (GEO series: GSE147507)

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Results for GAGAUGA

Z-value: 0.22

Motif logo

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miRNA associated with seed GAGAUGA

NamemiRBASE accession
hsa-miR-143-3p
MIMAT0000435
hsa-miR-4770
MIMAT0019924
hsa-miR-6088
MIMAT0023713

Activity profile of GAGAUGA motif

Sorted Z-values of GAGAUGA motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
chr10_-_105615164 0.10 ENST00000355946.2
ENST00000369774.4
SH3PXD2A
SH3 and PX domains 2A
chr17_+_55333876 0.08 ENST00000284073.2
MSI2
musashi RNA-binding protein 2
chr15_-_26108355 0.07 ENST00000356865.6
ATP10A
ATPase, class V, type 10A
chr5_-_100238956 0.05 ENST00000231461.5
ST8SIA4
ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4
chr20_+_56964169 0.05 ENST00000475243.1
VAPB
VAMP (vesicle-associated membrane protein)-associated protein B and C
chr19_+_18942720 0.04 ENST00000262803.5
UPF1
UPF1 regulator of nonsense transcripts homolog (yeast)
chr12_+_11802753 0.04 ENST00000396373.4
ETV6
ets variant 6
chr14_+_37667118 0.04 ENST00000556615.1
ENST00000327441.7
ENST00000536774.1
MIPOL1
mirror-image polydactyly 1
chr4_+_87856129 0.04 ENST00000395146.4
ENST00000507468.1
AFF1
AF4/FMR2 family, member 1
chr8_-_63998590 0.04 ENST00000260116.4
TTPA
tocopherol (alpha) transfer protein
chr17_-_48278983 0.03 ENST00000225964.5
COL1A1
collagen, type I, alpha 1
chr1_-_179198702 0.03 ENST00000502732.1
ABL2
c-abl oncogene 2, non-receptor tyrosine kinase
chr4_+_184826418 0.03 ENST00000308497.4
ENST00000438269.1
STOX2
storkhead box 2
chr14_-_96830207 0.03 ENST00000359933.4
ATG2B
autophagy related 2B
chr9_+_130830451 0.03 ENST00000373068.2
ENST00000373069.5
SLC25A25
solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 25
chr1_+_110577229 0.03 ENST00000369795.3
ENST00000369794.2
STRIP1
striatin interacting protein 1
chr15_-_68724490 0.03 ENST00000315757.7
ENST00000423218.2
ITGA11
integrin, alpha 11
chr3_-_52188397 0.03 ENST00000474012.1
ENST00000296484.2
POC1A
POC1 centriolar protein A
chr15_+_85923856 0.03 ENST00000560302.1
ENST00000394518.2
ENST00000361243.2
ENST00000560256.1
AKAP13
A kinase (PRKA) anchor protein 13
chr9_+_116638562 0.02 ENST00000374126.5
ENST00000288466.7
ZNF618
zinc finger protein 618
chr14_+_77228532 0.02 ENST00000167106.4
ENST00000554237.1
VASH1
vasohibin 1
chr19_-_19739007 0.02 ENST00000586703.1
ENST00000591042.1
ENST00000407877.3
LPAR2
lysophosphatidic acid receptor 2
chr5_+_139944024 0.02 ENST00000323146.3
SLC35A4
solute carrier family 35, member A4
chr13_-_33002151 0.02 ENST00000495479.1
ENST00000343281.4
ENST00000464470.1
ENST00000380139.4
ENST00000380133.2
N4BP2L1
NEDD4 binding protein 2-like 1
chr10_-_89623194 0.02 ENST00000445946.3
KLLN
killin, p53-regulated DNA replication inhibitor
chr4_-_53525406 0.02 ENST00000451218.2
ENST00000441222.3
USP46
ubiquitin specific peptidase 46
chr15_-_44486632 0.02 ENST00000484674.1
FRMD5
FERM domain containing 5
chrX_-_48824793 0.02 ENST00000376477.1
KCND1
potassium voltage-gated channel, Shal-related subfamily, member 1
chr17_-_46623441 0.02 ENST00000330070.4
HOXB2
homeobox B2
chr4_-_24914508 0.02 ENST00000504487.1
CCDC149
coiled-coil domain containing 149
chr5_-_142065612 0.02 ENST00000360966.5
ENST00000411960.1
FGF1
fibroblast growth factor 1 (acidic)
chr19_-_47735918 0.02 ENST00000449228.1
ENST00000300880.7
ENST00000341983.4
BBC3
BCL2 binding component 3
chr6_-_33282163 0.02 ENST00000434618.2
ENST00000456592.2
TAPBP
TAP binding protein (tapasin)
chr15_+_68871308 0.02 ENST00000261861.5
CORO2B
coronin, actin binding protein, 2B
chr5_+_142149955 0.02 ENST00000378004.3
ARHGAP26
Rho GTPase activating protein 26
chr11_+_118477144 0.02 ENST00000361417.2
PHLDB1
pleckstrin homology-like domain, family B, member 1
chr12_-_49449107 0.02 ENST00000301067.7
KMT2D
lysine (K)-specific methyltransferase 2D
chrX_-_48858630 0.02 ENST00000376425.3
ENST00000376444.3
GRIPAP1
GRIP1 associated protein 1
chr7_-_131241361 0.02 ENST00000378555.3
ENST00000322985.9
ENST00000541194.1
ENST00000537928.1
PODXL
podocalyxin-like
chr19_-_40324255 0.02 ENST00000593685.1
ENST00000600611.1
DYRK1B
dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B
chr2_-_25475120 0.02 ENST00000380746.4
ENST00000402667.1
DNMT3A
DNA (cytosine-5-)-methyltransferase 3 alpha
chr1_+_27153173 0.02 ENST00000374142.4
ZDHHC18
zinc finger, DHHC-type containing 18
chr12_+_50898881 0.02 ENST00000301180.5
DIP2B
DIP2 disco-interacting protein 2 homolog B (Drosophila)
chr5_-_158526756 0.02 ENST00000313708.6
ENST00000517373.1
EBF1
early B-cell factor 1
chr11_-_130184555 0.01 ENST00000525842.1
ZBTB44
zinc finger and BTB domain containing 44
chr6_-_91296602 0.01 ENST00000369325.3
ENST00000369327.3
MAP3K7
mitogen-activated protein kinase kinase kinase 7
chr5_+_71403061 0.01 ENST00000512974.1
ENST00000296755.7
MAP1B
microtubule-associated protein 1B
chr8_-_18871159 0.01 ENST00000327040.8
ENST00000440756.2
PSD3
pleckstrin and Sec7 domain containing 3
chr12_-_25403737 0.01 ENST00000256078.4
ENST00000556131.1
ENST00000311936.3
ENST00000557334.1
KRAS
Kirsten rat sarcoma viral oncogene homolog
chr19_+_37960240 0.01 ENST00000388801.3
ZNF570
zinc finger protein 570
chr1_+_87794150 0.01 ENST00000370544.5
LMO4
LIM domain only 4
chr7_+_6144514 0.01 ENST00000306177.5
ENST00000465073.2
USP42
ubiquitin specific peptidase 42
chr2_-_96931679 0.01 ENST00000258439.3
ENST00000432959.1
TMEM127
transmembrane protein 127
chr6_+_76458909 0.01 ENST00000369981.3
ENST00000369985.4
MYO6
myosin VI
chr1_+_62208091 0.01 ENST00000316485.6
ENST00000371158.2
INADL
InaD-like (Drosophila)
chr3_+_113465866 0.01 ENST00000273398.3
ENST00000538620.1
ENST00000496747.1
ENST00000475322.1
ATP6V1A
ATPase, H+ transporting, lysosomal 70kDa, V1 subunit A
chr1_-_211752073 0.01 ENST00000367001.4
SLC30A1
solute carrier family 30 (zinc transporter), member 1
chr5_-_126366500 0.01 ENST00000308660.5
MARCH3
membrane-associated ring finger (C3HC4) 3, E3 ubiquitin protein ligase
chr11_+_113930291 0.01 ENST00000335953.4
ZBTB16
zinc finger and BTB domain containing 16
chr14_+_21538429 0.01 ENST00000298694.4
ENST00000555038.1
ARHGEF40
Rho guanine nucleotide exchange factor (GEF) 40
chr16_+_70148230 0.01 ENST00000398122.3
ENST00000568530.1
PDPR
pyruvate dehydrogenase phosphatase regulatory subunit
chr10_-_30024716 0.01 ENST00000375398.2
ENST00000375400.3
SVIL
supervillin
chr19_-_47128294 0.01 ENST00000596260.1
ENST00000597185.1
ENST00000598865.1
ENST00000594275.1
ENST00000291294.2
PTGIR
prostaglandin I2 (prostacyclin) receptor (IP)
chr5_-_38595498 0.01 ENST00000263409.4
LIFR
leukemia inhibitory factor receptor alpha
chrX_-_73834449 0.01 ENST00000332687.6
ENST00000349225.2
RLIM
ring finger protein, LIM domain interacting
chr10_+_70320413 0.01 ENST00000373644.4
TET1
tet methylcytosine dioxygenase 1
chr11_-_9336234 0.01 ENST00000528080.1
TMEM41B
transmembrane protein 41B
chr15_+_77287426 0.01 ENST00000558012.1
ENST00000267939.5
ENST00000379595.3
PSTPIP1
proline-serine-threonine phosphatase interacting protein 1
chr2_+_97481974 0.01 ENST00000377060.3
ENST00000305510.3
CNNM3
cyclin M3
chr1_-_231560790 0.01 ENST00000366641.3
EGLN1
egl-9 family hypoxia-inducible factor 1
chr2_-_69870835 0.01 ENST00000409085.4
ENST00000406297.3
AAK1
AP2 associated kinase 1
chr2_+_86947296 0.01 ENST00000283632.4
RMND5A
required for meiotic nuclear division 5 homolog A (S. cerevisiae)
chr7_+_142985308 0.01 ENST00000310447.5
CASP2
caspase 2, apoptosis-related cysteine peptidase
chr16_+_50187556 0.01 ENST00000561678.1
ENST00000357464.3
PAPD5
PAP associated domain containing 5
chr5_+_169064245 0.01 ENST00000256935.8
DOCK2
dedicator of cytokinesis 2
chr20_+_42295745 0.01 ENST00000396863.4
ENST00000217026.4
MYBL2
v-myb avian myeloblastosis viral oncogene homolog-like 2
chr5_+_154092396 0.01 ENST00000336314.4
LARP1
La ribonucleoprotein domain family, member 1
chr7_-_128695147 0.01 ENST00000482320.1
ENST00000393245.1
ENST00000471234.1
TNPO3
transportin 3
chr9_-_123476719 0.01 ENST00000373930.3
MEGF9
multiple EGF-like-domains 9
chr11_-_26743546 0.01 ENST00000280467.6
ENST00000396005.3
SLC5A12
solute carrier family 5 (sodium/monocarboxylate cotransporter), member 12
chr22_-_22221900 0.01 ENST00000215832.6
ENST00000398822.3
MAPK1
mitogen-activated protein kinase 1
chr4_+_15004165 0.01 ENST00000538197.1
ENST00000541112.1
ENST00000442003.2
CPEB2
cytoplasmic polyadenylation element binding protein 2
chr12_+_69864129 0.01 ENST00000547219.1
ENST00000299293.2
ENST00000549921.1
ENST00000550316.1
ENST00000548154.1
ENST00000547414.1
ENST00000550389.1
ENST00000550937.1
ENST00000549092.1
ENST00000550169.1
FRS2
fibroblast growth factor receptor substrate 2
chr2_-_206950781 0.01 ENST00000403263.1
INO80D
INO80 complex subunit D
chr17_-_18908040 0.01 ENST00000388995.6
FAM83G
family with sequence similarity 83, member G
chr5_+_141488070 0.01 ENST00000253814.4
NDFIP1
Nedd4 family interacting protein 1
chr12_-_32908809 0.01 ENST00000324868.8
YARS2
tyrosyl-tRNA synthetase 2, mitochondrial
chr1_+_178062855 0.01 ENST00000448150.3
RASAL2
RAS protein activator like 2
chr20_+_30865429 0.01 ENST00000375712.3
KIF3B
kinesin family member 3B
chr17_-_61920280 0.01 ENST00000448276.2
ENST00000577990.1
SMARCD2
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2
chr17_+_61086917 0.01 ENST00000424789.2
ENST00000389520.4
TANC2
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2
chr1_+_2323260 0.01 ENST00000378518.1
ENST00000605895.1
ENST00000378513.3
ENST00000306256.9
ENST00000378512.1
RER1
retention in endoplasmic reticulum sorting receptor 1
chr3_+_128444965 0.01 ENST00000265062.3
RAB7A
RAB7A, member RAS oncogene family
chr2_-_85839146 0.01 ENST00000306336.5
ENST00000409734.3
C2orf68
chromosome 2 open reading frame 68
chr2_-_118771701 0.01 ENST00000376300.2
ENST00000319432.5
CCDC93
coiled-coil domain containing 93
chr2_-_9563319 0.01 ENST00000497105.1
ENST00000360635.3
ENST00000359712.3
ITGB1BP1
integrin beta 1 binding protein 1
chr1_+_51701924 0.01 ENST00000242719.3
RNF11
ring finger protein 11
chr6_+_114178512 0.01 ENST00000368635.4
MARCKS
myristoylated alanine-rich protein kinase C substrate
chr2_+_181845298 0.01 ENST00000410062.4
UBE2E3
ubiquitin-conjugating enzyme E2E 3
chr19_-_14629224 0.01 ENST00000254322.2
DNAJB1
DnaJ (Hsp40) homolog, subfamily B, member 1
chr11_+_76494253 0.01 ENST00000333090.4
TSKU
tsukushi, small leucine rich proteoglycan
chr5_-_154317740 0.01 ENST00000285873.7
GEMIN5
gem (nuclear organelle) associated protein 5
chr12_+_60083118 0.01 ENST00000261187.4
ENST00000543448.1
SLC16A7
solute carrier family 16 (monocarboxylate transporter), member 7
chr6_+_32936353 0.01 ENST00000374825.4
BRD2
bromodomain containing 2
chr7_+_2671568 0.01 ENST00000258796.7
TTYH3
tweety family member 3
chr4_+_44680429 0.01 ENST00000281543.5
GUF1
GUF1 GTPase homolog (S. cerevisiae)
chr1_+_36348790 0.00 ENST00000373204.4
AGO1
argonaute RISC catalytic component 1
chr15_+_39873268 0.00 ENST00000397591.2
ENST00000260356.5
THBS1
thrombospondin 1
chr18_-_60987220 0.00 ENST00000398117.1
BCL2
B-cell CLL/lymphoma 2
chr19_+_3359561 0.00 ENST00000589123.1
ENST00000346156.5
ENST00000395111.3
ENST00000586919.1
NFIC
nuclear factor I/C (CCAAT-binding transcription factor)
chr7_+_127292234 0.00 ENST00000354725.3
SND1
staphylococcal nuclease and tudor domain containing 1
chr8_-_82024290 0.00 ENST00000220597.4
PAG1
phosphoprotein associated with glycosphingolipid microdomains 1
chr12_-_65146636 0.00 ENST00000418919.2
GNS
glucosamine (N-acetyl)-6-sulfatase
chr16_-_23521710 0.00 ENST00000562117.1
ENST00000567468.1
ENST00000562944.1
ENST00000309859.4
GGA2
golgi-associated, gamma adaptin ear containing, ARF binding protein 2
chr6_+_118228657 0.00 ENST00000360388.4
SLC35F1
solute carrier family 35, member F1
chr1_+_6673745 0.00 ENST00000377648.4
PHF13
PHD finger protein 13
chrX_+_9983602 0.00 ENST00000380861.4
WWC3
WWC family member 3
chr2_+_85198216 0.00 ENST00000456682.1
ENST00000409785.4
KCMF1
potassium channel modulatory factor 1
chr1_-_41131326 0.00 ENST00000372684.3
RIMS3
regulating synaptic membrane exocytosis 3
chr2_+_233562015 0.00 ENST00000427233.1
ENST00000373566.3
ENST00000373563.4
ENST00000428883.1
ENST00000456491.1
ENST00000409480.1
ENST00000421433.1
ENST00000425040.1
ENST00000430720.1
ENST00000409547.1
ENST00000423659.1
ENST00000409196.3
ENST00000409451.3
ENST00000429187.1
ENST00000440945.1
GIGYF2
GRB10 interacting GYF protein 2
chrX_-_110655391 0.00 ENST00000356915.2
ENST00000356220.3
DCX
doublecortin
chr2_+_220042933 0.00 ENST00000430297.2
FAM134A
family with sequence similarity 134, member A
chr8_-_37756972 0.00 ENST00000330843.4
ENST00000522727.1
ENST00000287263.4
RAB11FIP1
RAB11 family interacting protein 1 (class I)
chr16_-_79634595 0.00 ENST00000326043.4
ENST00000393350.1
MAF
v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog
chr17_+_37026106 0.00 ENST00000318008.6
LASP1
LIM and SH3 protein 1
chr12_+_8234807 0.00 ENST00000339754.5
NECAP1
NECAP endocytosis associated 1
chr20_-_50159198 0.00 ENST00000371564.3
ENST00000396009.3
ENST00000610033.1
NFATC2
nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2
chr22_+_40390930 0.00 ENST00000333407.6
FAM83F
family with sequence similarity 83, member F
chr16_+_67063036 0.00 ENST00000290858.6
ENST00000564034.1
CBFB
core-binding factor, beta subunit
chr15_+_31619013 0.00 ENST00000307145.3
KLF13
Kruppel-like factor 13
chr1_-_155532484 0.00 ENST00000368346.3
ENST00000548830.1
ASH1L
ash1 (absent, small, or homeotic)-like (Drosophila)
chr9_+_130374537 0.00 ENST00000373302.3
ENST00000373299.1
STXBP1
syntaxin binding protein 1
chr19_-_51141196 0.00 ENST00000338916.4
SYT3
synaptotagmin III
chr15_+_67358163 0.00 ENST00000327367.4
SMAD3
SMAD family member 3
chr14_+_90863327 0.00 ENST00000356978.4
CALM1
calmodulin 1 (phosphorylase kinase, delta)
chr9_-_74525658 0.00 ENST00000333421.6
ABHD17B
abhydrolase domain containing 17B
chr10_+_105253661 0.00 ENST00000369780.4
NEURL
neuralized E3 ubiquitin protein ligase 1
chr1_+_165796753 0.00 ENST00000367879.4
UCK2
uridine-cytidine kinase 2
chr11_-_77532050 0.00 ENST00000308488.6
RSF1
remodeling and spacing factor 1
chr3_+_183873098 0.00 ENST00000313143.3
DVL3
dishevelled segment polarity protein 3
chr20_-_40247133 0.00 ENST00000373233.3
ENST00000309279.7
CHD6
chromodomain helicase DNA binding protein 6
chrX_-_74145273 0.00 ENST00000055682.6
KIAA2022
KIAA2022
chr2_-_190044480 0.00 ENST00000374866.3
COL5A2
collagen, type V, alpha 2
chr11_+_57520715 0.00 ENST00000524630.1
ENST00000529919.1
ENST00000399039.4
ENST00000533189.1
CTNND1
catenin (cadherin-associated protein), delta 1
chr1_-_205290865 0.00 ENST00000367157.3
NUAK2
NUAK family, SNF1-like kinase, 2
chr12_-_53625958 0.00 ENST00000327550.3
ENST00000546717.1
ENST00000425354.2
ENST00000394426.1
RARG
retinoic acid receptor, gamma
chr10_+_76871454 0.00 ENST00000372687.4
SAMD8
sterile alpha motif domain containing 8
chr12_-_54673871 0.00 ENST00000209875.4
CBX5
chromobox homolog 5
chr6_-_24721054 0.00 ENST00000378119.4
C6orf62
chromosome 6 open reading frame 62
chr11_+_86748863 0.00 ENST00000340353.7
TMEM135
transmembrane protein 135
chr19_-_38806560 0.00 ENST00000591755.1
ENST00000337679.8
ENST00000339413.6
YIF1B
Yip1 interacting factor homolog B (S. cerevisiae)
chr6_+_163835669 0.00 ENST00000453779.2
ENST00000275262.7
ENST00000392127.2
ENST00000361752.3
QKI
QKI, KH domain containing, RNA binding
chr1_-_154155595 0.00 ENST00000328159.4
ENST00000368531.2
ENST00000323144.7
ENST00000368533.3
ENST00000341372.3
TPM3
tropomyosin 3
chr12_+_103981044 0.00 ENST00000388887.2
STAB2
stabilin 2
chr11_-_67236691 0.00 ENST00000544903.1
ENST00000308022.2
ENST00000393877.3
ENST00000452789.2
TMEM134
transmembrane protein 134
chr14_-_31495569 0.00 ENST00000357479.5
ENST00000355683.5
STRN3
striatin, calmodulin binding protein 3
chr1_+_145611010 0.00 ENST00000369291.5
RNF115
ring finger protein 115
chr11_+_94501497 0.00 ENST00000317829.8
ENST00000317837.9
ENST00000433060.2
AMOTL1
angiomotin like 1
chr3_+_185303962 0.00 ENST00000296257.5
SENP2
SUMO1/sentrin/SMT3 specific peptidase 2
chr1_+_110527308 0.00 ENST00000369799.5
AHCYL1
adenosylhomocysteinase-like 1
chr5_+_141303373 0.00 ENST00000432126.2
ENST00000194118.4
KIAA0141
KIAA0141
chr9_+_79074068 0.00 ENST00000444201.2
ENST00000376730.4
GCNT1
glucosaminyl (N-acetyl) transferase 1, core 2
chr6_-_43543702 0.00 ENST00000265351.7
XPO5
exportin 5
chr17_+_56160768 0.00 ENST00000579991.2
DYNLL2
dynein, light chain, LC8-type 2

Network of associatons between targets according to the STRING database.

First level regulatory network of GAGAUGA

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological_process category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.1 GO:0072675 multinuclear osteoclast differentiation(GO:0072674) osteoclast fusion(GO:0072675)
0.0 0.0 GO:0044691 tooth eruption(GO:0044691)
0.0 0.0 GO:0000294 nuclear-transcribed mRNA catabolic process, endonucleolytic cleavage-dependent decay(GO:0000294)

Gene overrepresentation in molecular_function category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.0 GO:0033149 FFAT motif binding(GO:0033149)
0.0 0.0 GO:0008431 vitamin E binding(GO:0008431)