ISMARA results: GGAGUGU

Project

A549 cells infected with SARS-CoV-2 Analysis Results (GEO series: GSE147507)

Navigation

Downloads

Results for GGAGUGU

Z-value: 0.17

Motif logo

miRNA associated with seed GGAGUGU

Name	miRBASE accession
hsa-miR-122-5p miRBase	MIMAT0000421

Activity profile of GGAGUGU motif

Sorted Z-values of GGAGUGU motif

Top targets:

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr5_+_162864575 Show fit	0.07	ENST00000512163.1 ENST00000393929.1 ENST00000340828.2 ENST00000511683.2 ENST00000510097.1 ENST00000511490.2 ENST00000510664.1	CCNG1 Ensembl NCBI GeneCards UniProt Show fit	cyclin G1
chr7_+_100318423 Show fit	0.05	ENST00000252723.2	EPO Ensembl NCBI GeneCards UniProt Show fit	erythropoietin
chrX_-_135056216 Show fit	0.05	ENST00000305963.2	MMGT1 Ensembl NCBI GeneCards UniProt Show fit	membrane magnesium transporter 1
chr7_-_33102338 Show fit	0.04	ENST00000610140.1	NT5C3A Ensembl NCBI GeneCards UniProt Show fit	5'-nucleotidase, cytosolic IIIA
chr8_+_16884740 Show fit	0.04	ENST00000318063.5	MICU3 Ensembl NCBI GeneCards UniProt Show fit	mitochondrial calcium uptake family, member 3
chr1_+_16062820 Show fit	0.04	ENST00000294454.5	SLC25A34 Ensembl NCBI GeneCards UniProt Show fit	solute carrier family 25, member 34
chr1_+_25071848 Show fit	0.04	ENST00000374379.4	CLIC4 Ensembl NCBI GeneCards UniProt Show fit	chloride intracellular channel 4
chr14_+_37667118 Show fit	0.03	ENST00000556615.1 ENST00000327441.7 ENST00000536774.1	MIPOL1 Ensembl NCBI GeneCards UniProt Show fit	mirror-image polydactyly 1
chr7_-_95225768 Show fit	0.03	ENST00000005178.5	PDK4 Ensembl NCBI GeneCards UniProt Show fit	pyruvate dehydrogenase kinase, isozyme 4
chr8_-_57123815 Show fit	0.03	ENST00000316981.3 ENST00000423799.2 ENST00000429357.2	PLAG1 Ensembl NCBI GeneCards UniProt Show fit	pleiomorphic adenoma gene 1
chr6_-_35464727 Show fit	0.02	ENST00000402886.3	TEAD3 Ensembl NCBI GeneCards UniProt Show fit	TEA domain family member 3
chr15_-_83316254 Show fit	0.02	ENST00000567678.1 ENST00000450751.2	CPEB1 Ensembl NCBI GeneCards UniProt Show fit	cytoplasmic polyadenylation element binding protein 1
chr4_-_53525406 Show fit	0.02	ENST00000451218.2 ENST00000441222.3	USP46 Ensembl NCBI GeneCards UniProt Show fit	ubiquitin specific peptidase 46
chr4_-_103266219 Show fit	0.02	ENST00000394833.2	SLC39A8 Ensembl NCBI GeneCards UniProt Show fit	solute carrier family 39 (zinc transporter), member 8
chr4_-_76598296 Show fit	0.02	ENST00000395719.3	G3BP2 Ensembl NCBI GeneCards UniProt Show fit	GTPase activating protein (SH3 domain) binding protein 2
chr12_-_98897617 Show fit	0.02	ENST00000501499.1	RP11-181C3.1 Ensembl NCBI GeneCards UniProt Show fit	Uncharacterized protein
chr21_+_41117334 Show fit	0.02	ENST00000380588.4	IGSF5 Ensembl NCBI GeneCards UniProt Show fit	immunoglobulin superfamily, member 5
chr1_-_244615425 Show fit	0.02	ENST00000366535.3	ADSS Ensembl NCBI GeneCards UniProt Show fit	adenylosuccinate synthase
chr15_+_44719394 Show fit	0.02	ENST00000260327.4 ENST00000396780.1	CTDSPL2 Ensembl NCBI GeneCards UniProt Show fit	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2
chr5_+_96271141 Show fit	0.02	ENST00000231368.5	LNPEP Ensembl NCBI GeneCards UniProt Show fit	leucyl/cystinyl aminopeptidase
chr5_+_179125907 Show fit	0.01	ENST00000247461.4 ENST00000452673.2 ENST00000502498.1 ENST00000507307.1 ENST00000513246.1 ENST00000502673.1 ENST00000506654.1 ENST00000512607.2 ENST00000510810.1	CANX Ensembl NCBI GeneCards UniProt Show fit	calnexin
chr2_-_219925189 Show fit	0.01	ENST00000295731.6	IHH Ensembl NCBI GeneCards UniProt Show fit	indian hedgehog
chr1_+_27114418 Show fit	0.01	ENST00000078527.4	PIGV Ensembl NCBI GeneCards UniProt Show fit	phosphatidylinositol glycan anchor biosynthesis, class V
chr21_-_40685477 Show fit	0.01	ENST00000342449.3	BRWD1 Ensembl NCBI GeneCards UniProt Show fit	bromodomain and WD repeat domain containing 1
chr10_+_70480963 Show fit	0.01	ENST00000265872.6 ENST00000535016.1 ENST00000538031.1 ENST00000543719.1 ENST00000539539.1 ENST00000543225.1 ENST00000536012.1 ENST00000494903.2	CCAR1 Ensembl NCBI GeneCards UniProt Show fit	cell division cycle and apoptosis regulator 1
chr10_-_74856608 Show fit	0.01	ENST00000307116.2 ENST00000373008.2 ENST00000412021.2 ENST00000394890.2 ENST00000263556.3 ENST00000440381.1	P4HA1 Ensembl NCBI GeneCards UniProt Show fit	prolyl 4-hydroxylase, alpha polypeptide I
chr8_-_68255912 Show fit	0.01	ENST00000262215.3 ENST00000519436.1	ARFGEF1 Ensembl NCBI GeneCards UniProt Show fit	ADP-ribosylation factor guanine nucleotide-exchange factor 1 (brefeldin A-inhibited)
chr18_-_47013586 Show fit	0.01	ENST00000318240.3 ENST00000579820.1	C18orf32 Ensembl NCBI GeneCards UniProt Show fit	chromosome 18 open reading frame 32
chr17_-_4269768 Show fit	0.01	ENST00000396981.2	UBE2G1 Ensembl NCBI GeneCards UniProt Show fit	ubiquitin-conjugating enzyme E2G 1
chr4_+_145567173 Show fit	0.01	ENST00000296575.3	HHIP Ensembl NCBI GeneCards UniProt Show fit	hedgehog interacting protein
chr1_-_208417620 Show fit	0.01	ENST00000367033.3	PLXNA2 Ensembl NCBI GeneCards UniProt Show fit	plexin A2
chr16_+_69599861 Show fit	0.01	ENST00000354436.2	NFAT5 Ensembl NCBI GeneCards UniProt Show fit	nuclear factor of activated T-cells 5, tonicity-responsive
chr10_-_61666267 Show fit	0.01	ENST00000263102.6	CCDC6 Ensembl NCBI GeneCards UniProt Show fit	coiled-coil domain containing 6
chr2_-_96811170 Show fit	0.01	ENST00000288943.4	DUSP2 Ensembl NCBI GeneCards UniProt Show fit	dual specificity phosphatase 2
chr22_+_38201114 Show fit	0.00	ENST00000340857.2	H1F0 Ensembl NCBI GeneCards UniProt Show fit	H1 histone family, member 0
chr8_+_102504651 Show fit	0.00	ENST00000251808.3 ENST00000521085.1	GRHL2 Ensembl NCBI GeneCards UniProt Show fit	grainyhead-like 2 (Drosophila)
chr10_-_23003460 Show fit	0.00	ENST00000376573.4	PIP4K2A Ensembl NCBI GeneCards UniProt Show fit	phosphatidylinositol-5-phosphate 4-kinase, type II, alpha
chr10_-_32345305 Show fit	0.00	ENST00000302418.4	KIF5B Ensembl NCBI GeneCards UniProt Show fit	kinesin family member 5B
chr19_+_46800289 Show fit	0.00	ENST00000377670.4	HIF3A Ensembl NCBI GeneCards UniProt Show fit	hypoxia inducible factor 3, alpha subunit
chr1_-_109940550 Show fit	0.00	ENST00000256637.6	SORT1 Ensembl NCBI GeneCards UniProt Show fit	sortilin 1
chr1_-_161102421 Show fit	0.00	ENST00000490843.2 ENST00000368006.3 ENST00000392188.1 ENST00000545495.1	DEDD Ensembl NCBI GeneCards UniProt Show fit	death effector domain containing
chr15_-_34628951 Show fit	0.00	ENST00000397707.2 ENST00000560611.1	SLC12A6 Ensembl NCBI GeneCards UniProt Show fit	solute carrier family 12 (potassium/chloride transporter), member 6
chr1_+_161087873 Show fit	0.00	ENST00000368009.2 ENST00000368007.4 ENST00000368008.1 ENST00000392190.5	NIT1 Ensembl NCBI GeneCards UniProt Show fit	nitrilase 1
chr6_+_152011628 Show fit	0.00	ENST00000404742.1 ENST00000440973.1	ESR1 Ensembl NCBI GeneCards UniProt Show fit	estrogen receptor 1
chr11_-_108369101 Show fit	0.00	ENST00000323468.5	KDELC2 Ensembl NCBI GeneCards UniProt Show fit	KDEL (Lys-Asp-Glu-Leu) containing 2
chr5_-_141392538 Show fit	0.00	ENST00000503794.1 ENST00000510194.1 ENST00000504424.1 ENST00000513454.1 ENST00000458112.2 ENST00000542860.1 ENST00000503229.1 ENST00000500692.2 ENST00000311337.6 ENST00000504139.1 ENST00000505689.1	GNPDA1 Ensembl NCBI GeneCards UniProt Show fit	glucosamine-6-phosphate deaminase 1
chr8_-_117886955 Show fit	0.00	ENST00000297338.2	RAD21 Ensembl NCBI GeneCards UniProt Show fit	RAD21 homolog (S. pombe)
chr17_+_41857793 Show fit	0.00	ENST00000449302.3	C17orf105 Ensembl NCBI GeneCards UniProt Show fit	chromosome 17 open reading frame 105

Network of associatons between targets according to the STRING database.

First level regulatory network of GGAGUGU

View svg image
View png image

Gene Ontology Analysis

Gene overrepresentation in biological_process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0038162	erythropoietin-mediated signaling pathway(GO:0038162)

Gene overrepresentation in molecular_function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0005128	erythropoietin receptor binding(GO:0005128)

Results for GGAGUGU

Z-value: 0.17

Motif logo

miRNA associated with seed GGAGUGU

Activity profile of GGAGUGU motif

Sorted Z-values of GGAGUGU motif

Top targets:

Network of associatons between targets according to the STRING database.

First level regulatory network of GGAGUGU

In order to view interactive SVG image please either update your browser to latest version or install SVG plugin.

Gene Ontology Analysis

Gene overrepresentation in biological_process category:

Gene overrepresentation in molecular_function category: