Motif ID: Hoxd9

Z-value: 0.676


Transcription factors associated with Hoxd9:

Gene SymbolEntrez IDGene Name
Hoxd9 ENSMUSG00000043342.8 Hoxd9



Activity profile for motif Hoxd9.

activity profile for motif Hoxd9


Sorted Z-values histogram for motif Hoxd9

Sorted Z-values for motif Hoxd9



Network of associatons between targets according to the STRING database.



First level regulatory network of Hoxd9

PNG image of the network

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Top targets:


Promoter Score Refseq Gene Symbol Gene Name
chr3_-_116129615 10.008 ENSMUST00000029574.8
Vcam1
vascular cell adhesion molecule 1
chr4_+_136143497 9.069 ENSMUST00000008016.2
Id3
inhibitor of DNA binding 3
chr18_-_78206408 7.969 ENSMUST00000163367.1
Slc14a2
solute carrier family 14 (urea transporter), member 2
chr6_-_36811361 5.002 ENSMUST00000101534.1
Ptn
pleiotrophin
chr17_-_32166879 4.588 ENSMUST00000087723.3
Notch3
notch 3
chr15_-_37459327 4.521 ENSMUST00000119730.1
ENSMUST00000120746.1
Ncald

neurocalcin delta

chrX_+_82948861 4.473 ENSMUST00000114000.1
Dmd
dystrophin, muscular dystrophy
chr11_-_109472611 4.418 ENSMUST00000168740.1
Slc16a6
solute carrier family 16 (monocarboxylic acid transporters), member 6
chr3_-_66296807 4.224 ENSMUST00000029419.7
Veph1
ventricular zone expressed PH domain-containing 1
chr9_-_64172879 4.166 ENSMUST00000176299.1
ENSMUST00000130127.1
ENSMUST00000176794.1
ENSMUST00000177045.1
Zwilch



zwilch kinetochore protein



chr19_+_23723279 4.064 ENSMUST00000067077.1
Gm9938
predicted gene 9938
chr2_-_84425258 4.011 ENSMUST00000074262.2
Calcrl
calcitonin receptor-like
chr7_+_67647405 3.963 ENSMUST00000032774.8
ENSMUST00000107471.1
Ttc23

tetratricopeptide repeat domain 23

chr13_-_105271039 3.694 ENSMUST00000069686.6
Rnf180
ring finger protein 180
chr12_+_38783503 3.630 ENSMUST00000159334.1
Etv1
ets variant gene 1
chr1_+_167598450 3.490 ENSMUST00000111386.1
ENSMUST00000111384.1
Rxrg

retinoid X receptor gamma

chr5_-_62766153 3.457 ENSMUST00000076623.4
Arap2
ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2
chrX_+_85048309 3.402 ENSMUST00000113991.1
ENSMUST00000113992.2
Dmd

dystrophin, muscular dystrophy

chr1_-_163289214 3.376 ENSMUST00000183691.1
Prrx1
paired related homeobox 1
chr7_+_66365905 3.139 ENSMUST00000107486.1
Gm10974
predicted gene 10974
chr5_+_63812447 2.978 ENSMUST00000081747.3
0610040J01Rik
RIKEN cDNA 0610040J01 gene
chr1_+_167598384 2.647 ENSMUST00000015987.3
Rxrg
retinoid X receptor gamma
chr9_-_39604124 2.357 ENSMUST00000042485.4
ENSMUST00000141370.1
AW551984

expressed sequence AW551984

chr1_-_128102412 2.197 ENSMUST00000112538.1
ENSMUST00000086614.5
Zranb3

zinc finger, RAN-binding domain containing 3

chr7_+_127800604 2.185 ENSMUST00000046863.5
ENSMUST00000106272.1
ENSMUST00000139068.1
Hsd3b7


hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7


chr13_-_41273977 2.137 ENSMUST00000163881.1
Gm17364
predicted gene, 17364
chr11_+_110968016 2.108 ENSMUST00000106636.1
ENSMUST00000180023.1
Kcnj16

potassium inwardly-rectifying channel, subfamily J, member 16

chr5_-_62765618 2.089 ENSMUST00000159470.1
Arap2
ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2
chr15_+_39006272 2.067 ENSMUST00000179165.1
ENSMUST00000022906.7
Fzd6

frizzled homolog 6 (Drosophila)

chr2_-_58052832 1.986 ENSMUST00000090940.5
Ermn
ermin, ERM-like protein
chr9_-_21989427 1.965 ENSMUST00000045726.6
Rgl3
ral guanine nucleotide dissociation stimulator-like 3
chr11_+_29373618 1.916 ENSMUST00000040182.6
ENSMUST00000109477.1
Ccdc88a

coiled coil domain containing 88A

chr10_+_115569986 1.874 ENSMUST00000173620.1
A930009A15Rik
RIKEN cDNA A930009A15 gene
chrM_+_11734 1.815 ENSMUST00000082418.1
mt-Nd5
mitochondrially encoded NADH dehydrogenase 5
chr16_-_45693658 1.742 ENSMUST00000114562.2
ENSMUST00000036617.7
Tmprss7

transmembrane serine protease 7

chr3_+_114030532 1.651 ENSMUST00000123619.1
ENSMUST00000092155.5
Col11a1

collagen, type XI, alpha 1

chr10_+_75037066 1.622 ENSMUST00000147802.1
ENSMUST00000020391.5
Rab36

RAB36, member RAS oncogene family

chr2_-_63184253 1.604 ENSMUST00000075052.3
ENSMUST00000112454.1
Kcnh7

potassium voltage-gated channel, subfamily H (eag-related), member 7

chr5_-_77408034 1.557 ENSMUST00000163898.1
ENSMUST00000046746.6
Igfbp7

insulin-like growth factor binding protein 7

chr17_-_78684262 1.548 ENSMUST00000145480.1
Strn
striatin, calmodulin binding protein
chr1_-_139377094 1.437 ENSMUST00000131586.1
ENSMUST00000145244.1
Crb1

crumbs homolog 1 (Drosophila)

chr15_-_65014904 1.390 ENSMUST00000110100.2
Gm21961
predicted gene, 21961
chrX_-_49797700 1.355 ENSMUST00000033442.7
ENSMUST00000114891.1
Igsf1

immunoglobulin superfamily, member 1

chr11_-_89538556 1.341 ENSMUST00000169201.1
Ankfn1
ankyrin-repeat and fibronectin type III domain containing 1
chr19_-_56548122 1.324 ENSMUST00000026063.5
ENSMUST00000182276.1
Dclre1a

DNA cross-link repair 1A, PSO2 homolog (S. cerevisiae)

chr7_-_16286744 1.321 ENSMUST00000150528.2
ENSMUST00000118976.2
ENSMUST00000146609.2
Ccdc9


coiled-coil domain containing 9


chr17_-_45474839 1.316 ENSMUST00000024731.8
Spats1
spermatogenesis associated, serine-rich 1
chr19_+_56548254 1.313 ENSMUST00000071423.5
Nhlrc2
NHL repeat containing 2
chr1_+_180330470 1.298 ENSMUST00000070181.6
Itpkb
inositol 1,4,5-trisphosphate 3-kinase B
chr5_-_69590783 1.245 ENSMUST00000173927.1
Gnpda2
glucosamine-6-phosphate deaminase 2
chr14_-_100149764 1.202 ENSMUST00000097079.4
Klf12
Kruppel-like factor 12
chr3_+_35754121 1.155 ENSMUST00000108186.1
ENSMUST00000029257.8
Atp11b

ATPase, class VI, type 11B

chr12_+_102128718 1.115 ENSMUST00000159329.1
Slc24a4
solute carrier family 24 (sodium/potassium/calcium exchanger), member 4
chr16_-_65562686 1.059 ENSMUST00000004965.6
Chmp2b
charged multivesicular body protein 2B
chr1_-_139377041 1.046 ENSMUST00000059825.5
Crb1
crumbs homolog 1 (Drosophila)
chr6_+_145934113 1.002 ENSMUST00000032383.7
Sspn
sarcospan
chr2_-_175131864 1.002 ENSMUST00000108929.2
Gm14399
predicted gene 14399
chr3_+_53845086 0.996 ENSMUST00000108014.1
Gm10985
predicted gene 10985
chr19_-_56548013 0.978 ENSMUST00000182059.1
Dclre1a
DNA cross-link repair 1A, PSO2 homolog (S. cerevisiae)
chr17_+_78491549 0.963 ENSMUST00000079363.4
Gm10093
predicted pseudogene 10093
chr16_-_50330987 0.772 ENSMUST00000114488.1
Bbx
bobby sox homolog (Drosophila)
chr2_-_63184170 0.681 ENSMUST00000112452.1
Kcnh7
potassium voltage-gated channel, subfamily H (eag-related), member 7
chr19_+_46689902 0.671 ENSMUST00000074912.7
2010012O05Rik
RIKEN cDNA 2010012O05 gene
chrX_-_134541847 0.654 ENSMUST00000054213.4
Timm8a1
translocase of inner mitochondrial membrane 8A1
chr2_+_91526756 0.645 ENSMUST00000111338.3
Ckap5
cytoskeleton associated protein 5
chr3_-_88772578 0.628 ENSMUST00000090945.4
Syt11
synaptotagmin XI
chr1_+_183388981 0.623 ENSMUST00000097043.5
Taf1a
TATA box binding protein (Tbp)-associated factor, RNA polymerase I, A
chr16_+_10835046 0.606 ENSMUST00000037913.8
Rmi2
RMI2, RecQ mediated genome instability 2, homolog (S. cerevisiae)
chr19_-_29753600 0.604 ENSMUST00000175764.1
9930021J03Rik
RIKEN cDNA 9930021J03 gene
chr2_+_30952955 0.587 ENSMUST00000028199.5
Tor1b
torsin family 1, member B
chr10_-_63421739 0.571 ENSMUST00000054760.4
Gm7075
predicted gene 7075
chr7_+_120851183 0.550 ENSMUST00000106487.1
ENSMUST00000143322.1
ENSMUST00000106488.1
Eef2k


eukaryotic elongation factor-2 kinase


chr7_-_34313531 0.504 ENSMUST00000108074.1
4931406P16Rik
RIKEN cDNA 4931406P16 gene
chr2_-_116064721 0.396 ENSMUST00000110906.2
Meis2
Meis homeobox 2
chr14_-_75754475 0.386 ENSMUST00000049168.7
Cog3
component of oligomeric golgi complex 3
chr14_-_118923070 0.367 ENSMUST00000047208.5
Dzip1
DAZ interacting protein 1
chr7_+_30565410 0.359 ENSMUST00000043850.7
Igflr1
IGF-like family receptor 1
chrX_-_134111852 0.315 ENSMUST00000033610.6
Nox1
NADPH oxidase 1
chr9_-_96437434 0.246 ENSMUST00000070500.2
BC043934
cDNA sequence BC043934
chr12_+_59129757 0.190 ENSMUST00000069430.8
ENSMUST00000177370.1
Ctage5

CTAGE family, member 5

chr13_+_58281183 0.181 ENSMUST00000180882.1
ENSMUST00000180452.1
Gm26555

predicted gene, 26555

chr12_+_59129720 0.148 ENSMUST00000175912.1
ENSMUST00000176892.1
Ctage5

CTAGE family, member 5

chr2_+_11172080 0.142 ENSMUST00000114853.1
Prkcq
protein kinase C, theta
chr3_-_65958236 0.137 ENSMUST00000029416.7
Ccnl1
cyclin L1
chr3_-_49757257 0.100 ENSMUST00000035931.7
Pcdh18
protocadherin 18
chr16_+_44943737 0.044 ENSMUST00000114622.3
ENSMUST00000166731.1
Cd200r3

CD200 receptor 3


Gene Ontology Analysis

Gene overrepresentation in biological_process category:

Log-likelihood per target  Total log-likelihood Term Description
2.6 7.9 GO:0008065 establishment of blood-nerve barrier(GO:0008065) regulation of skeletal muscle contraction by regulation of release of sequestered calcium ion(GO:0014809)
1.7 5.0 GO:1904395 regulation of skeletal muscle acetylcholine-gated channel clustering(GO:1904393) positive regulation of skeletal muscle acetylcholine-gated channel clustering(GO:1904395)
1.1 8.0 GO:0015840 urea transport(GO:0015840) urea transmembrane transport(GO:0071918)
1.0 4.0 GO:0034285 response to sucrose(GO:0009744) response to disaccharide(GO:0034285)
0.9 10.0 GO:0061032 visceral serous pericardium development(GO:0061032)
0.7 2.2 GO:0036292 DNA rewinding(GO:0036292)
0.7 2.1 GO:0035880 embryonic nail plate morphogenesis(GO:0035880)
0.3 2.4 GO:0060923 cardiac muscle cell fate commitment(GO:0060923)
0.3 9.1 GO:0071398 cellular response to fatty acid(GO:0071398)
0.3 1.3 GO:0033030 negative regulation of neutrophil apoptotic process(GO:0033030)
0.3 0.6 GO:1904468 negative regulation of tumor necrosis factor secretion(GO:1904468)
0.3 3.7 GO:0042415 norepinephrine metabolic process(GO:0042415)
0.3 2.3 GO:0031848 protection from non-homologous end joining at telomere(GO:0031848)
0.3 1.7 GO:0035989 tendon development(GO:0035989)
0.3 3.4 GO:0048664 neuron fate determination(GO:0048664)
0.2 4.4 GO:0035873 lactate transport(GO:0015727) lactate transmembrane transport(GO:0035873) plasma membrane lactate transport(GO:0035879)
0.2 2.2 GO:0016127 cholesterol catabolic process(GO:0006707) sterol catabolic process(GO:0016127)
0.2 6.1 GO:1901522 positive regulation of transcription from RNA polymerase II promoter involved in cellular response to chemical stimulus(GO:1901522)
0.2 1.2 GO:0006046 N-acetylglucosamine catabolic process(GO:0006046)
0.1 1.3 GO:0050957 equilibrioception(GO:0050957)
0.1 0.6 GO:0030951 establishment or maintenance of microtubule cytoskeleton polarity(GO:0030951)
0.1 1.1 GO:0097186 amelogenesis(GO:0097186)
0.1 1.1 GO:1901673 regulation of mitotic spindle assembly(GO:1901673)
0.1 4.6 GO:0048844 artery morphogenesis(GO:0048844)
0.1 2.5 GO:0007638 mechanosensory behavior(GO:0007638)
0.1 0.3 GO:0045113 integrin biosynthetic process(GO:0045112) regulation of integrin biosynthetic process(GO:0045113)
0.1 1.9 GO:0032148 activation of protein kinase B activity(GO:0032148)
0.1 2.1 GO:0042462 eye photoreceptor cell development(GO:0042462)
0.1 0.6 GO:0071763 nuclear membrane organization(GO:0071763)
0.1 4.5 GO:0003073 regulation of systemic arterial blood pressure(GO:0003073)
0.0 0.1 GO:2000569 T-helper 2 cell activation(GO:0035712) positive regulation of T-helper 17 type immune response(GO:2000318) regulation of T-helper 2 cell activation(GO:2000569) positive regulation of T-helper 2 cell activation(GO:2000570)
0.0 1.1 GO:0010107 potassium ion import(GO:0010107)
0.0 4.2 GO:0007093 mitotic cell cycle checkpoint(GO:0007093)
0.0 1.3 GO:0042773 ATP synthesis coupled electron transport(GO:0042773)
0.0 1.6 GO:0050810 regulation of steroid biosynthetic process(GO:0050810)
0.0 0.4 GO:0000301 retrograde transport, vesicle recycling within Golgi(GO:0000301)
0.0 2.3 GO:0071805 potassium ion transmembrane transport(GO:0071805)
0.0 0.5 GO:0031952 regulation of protein autophosphorylation(GO:0031952)
0.0 0.1 GO:1901409 regulation of phosphorylation of RNA polymerase II C-terminal domain(GO:1901407) positive regulation of phosphorylation of RNA polymerase II C-terminal domain(GO:1901409)
0.0 0.6 GO:0006360 transcription from RNA polymerase I promoter(GO:0006360)

Gene overrepresentation in cellular_component category:

Log-likelihood per target  Total log-likelihood Term Description
1.4 4.2 GO:1990423 RZZ complex(GO:1990423)
0.5 8.9 GO:0016010 dystrophin-associated glycoprotein complex(GO:0016010) glycoprotein complex(GO:0090665)
0.4 10.0 GO:0002102 podosome(GO:0002102)
0.2 2.0 GO:0033269 internode region of axon(GO:0033269)
0.1 1.7 GO:0098643 fibrillar collagen trimer(GO:0005583) banded collagen fibril(GO:0098643)
0.1 0.6 GO:0000120 RNA polymerase I transcription factor complex(GO:0000120)
0.1 0.6 GO:0048787 presynaptic active zone membrane(GO:0048787)
0.1 2.1 GO:0016327 apicolateral plasma membrane(GO:0016327)
0.1 1.5 GO:0000159 protein phosphatase type 2A complex(GO:0000159)
0.1 0.3 GO:0071438 NADPH oxidase complex(GO:0043020) invadopodium membrane(GO:0071438)
0.1 5.1 GO:0031594 neuromuscular junction(GO:0031594)
0.0 1.7 GO:0043596 nuclear replication fork(GO:0043596)
0.0 2.5 GO:0005902 microvillus(GO:0005902)
0.0 0.6 GO:0000930 gamma-tubulin complex(GO:0000930)
0.0 3.7 GO:0031227 intrinsic component of endoplasmic reticulum membrane(GO:0031227)
0.0 0.4 GO:0017119 Golgi transport complex(GO:0017119)
0.0 0.4 GO:0097539 ciliary transition fiber(GO:0097539)
0.0 15.6 GO:0005887 integral component of plasma membrane(GO:0005887)
0.0 1.3 GO:0070469 respiratory chain(GO:0070469)
0.0 2.3 GO:0000784 nuclear chromosome, telomeric region(GO:0000784)
0.0 0.6 GO:0005788 endoplasmic reticulum lumen(GO:0005788)
0.0 0.7 GO:0005758 mitochondrial intermembrane space(GO:0005758)

Gene overrepresentation in molecular_function category:

Log-likelihood per target  Total log-likelihood Term Description
2.5 10.0 GO:0008131 primary amine oxidase activity(GO:0008131)
1.7 5.0 GO:0035373 chondroitin sulfate proteoglycan binding(GO:0035373)
1.3 8.0 GO:0015265 urea channel activity(GO:0015265)
1.0 4.0 GO:0097642 calcitonin family receptor activity(GO:0097642)
0.6 6.1 GO:0004886 9-cis retinoic acid receptor activity(GO:0004886)
0.5 7.9 GO:0017166 dystroglycan binding(GO:0002162) vinculin binding(GO:0017166)
0.4 2.2 GO:0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity(GO:0003854)
0.3 2.0 GO:0008321 Ral guanyl-nucleotide exchange factor activity(GO:0008321)
0.3 4.4 GO:0015129 lactate transmembrane transporter activity(GO:0015129)
0.3 2.3 GO:0035312 5'-3' exodeoxyribonuclease activity(GO:0035312)
0.2 1.2 GO:0004342 glucosamine-6-phosphate deaminase activity(GO:0004342)
0.2 1.1 GO:0008273 calcium, potassium:sodium antiporter activity(GO:0008273)
0.2 9.1 GO:0005504 fatty acid binding(GO:0005504)
0.2 1.3 GO:0008440 inositol-1,4,5-trisphosphate 3-kinase activity(GO:0008440)
0.2 0.5 GO:0004686 elongation factor-2 kinase activity(GO:0004686)
0.2 2.2 GO:0036310 annealing helicase activity(GO:0036310)
0.2 3.4 GO:0005242 inward rectifier potassium channel activity(GO:0005242)
0.2 1.4 GO:0034711 inhibin binding(GO:0034711)
0.1 4.5 GO:0043014 alpha-tubulin binding(GO:0043014)
0.1 5.5 GO:0005547 phosphatidylinositol-3,4,5-trisphosphate binding(GO:0005547)
0.1 0.3 GO:0030171 voltage-gated proton channel activity(GO:0030171)
0.1 3.4 GO:0071837 HMG box domain binding(GO:0071837)
0.1 3.7 GO:0031624 ubiquitin conjugating enzyme binding(GO:0031624)
0.1 2.1 GO:0042813 Wnt-activated receptor activity(GO:0042813)
0.1 1.9 GO:0043422 protein kinase B binding(GO:0043422)
0.1 1.6 GO:0005520 insulin-like growth factor binding(GO:0005520)
0.1 1.8 GO:0050136 NADH dehydrogenase (ubiquinone) activity(GO:0008137) NADH dehydrogenase (quinone) activity(GO:0050136)
0.1 1.5 GO:0070016 armadillo repeat domain binding(GO:0070016)
0.1 1.2 GO:0004012 phospholipid-translocating ATPase activity(GO:0004012)
0.0 1.7 GO:0005201 extracellular matrix structural constituent(GO:0005201)
0.0 1.7 GO:0004252 serine-type endopeptidase activity(GO:0004252)
0.0 0.6 GO:0048487 beta-tubulin binding(GO:0048487)
0.0 2.0 GO:0051015 actin filament binding(GO:0051015)