mm10_v2_chr3_-_80802789_80802840	8.6642	Hoxa4	ENSMUST00000107745.1|Gria2|ENSMUSG00000033981.8|glutamate receptor, ionotropic, AMPA2 (alpha 2) 	ENSMUST00000075316.4|Gria2|ENSMUSG00000033981.8|glutamate receptor, ionotropic, AMPA2 (alpha 2)
mm10_v2_chr2_+_90885860_90885872	7.60942	Hoxa4	ENSMUST00000111466.2|C1qtnf4|ENSMUSG00000040794.5|C1q and tumor necrosis factor related protein 4
mm10_v2_chr2_+_170731807_170731920	6.61305	Hoxa4	ENSMUST00000029075.4|Dok5|ENSMUSG00000027560.4|docking protein 5
mm10_v2_chr5_+_17574726_17574899	5.59026	Hoxa4	ENSMUST00000169603.1|Sema3c|ENSMUSG00000028780.7|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C
mm10_v2_chr14_-_79771305_79771318	4.87455	Hoxa4	ENSMUST00000039568.5|Pcdh8|ENSMUSG00000036422.5|protocadherin 8
mm10_v2_chr4_+_144892813_144892835	4.77698	Hoxa4	ENSMUST00000105744.1|Dhrs3|ENSMUSG00000066026.8|dehydrogenase/reductase (SDR family) member 3 	ENSMUST00000171001.1|Dhrs3|ENSMUSG00000066026.8|dehydrogenase/reductase (SDR family) member 3
mm10_v2_chr1_+_19103022_19103043	4.61677	Hoxa4	ENSMUST00000037294.7|Tfap2d|ENSMUSG00000042596.7|transcription factor AP-2, delta
mm10_v2_chr5_-_84417359_84417389	4.56694	Hoxa4	ENSMUST00000113401.1|Epha5|ENSMUSG00000029245.10|Eph receptor A5
mm10_v2_chr2_-_77519565_77519647	4.56364	Hoxa4	ENSMUST00000111830.2|Zfp385b|ENSMUSG00000027016.11|zinc finger protein 385B
mm10_v2_chr2_+_71528657_71528683	4.38773	Hoxa4	ENSMUST00000126400.1|Dlx1|ENSMUSG00000041911.3|distal-less homeobox 1
mm10_v2_chr11_+_57011945_57011956	4.337	Hoxa4	ENSMUST00000094179.4|Gria1|ENSMUSG00000020524.10|glutamate receptor, ionotropic, AMPA1 (alpha 1)
mm10_v2_chr11_+_57011798_57011827	4.27865	Hoxa4	ENSMUST00000036315.9|Gria1|ENSMUSG00000020524.10|glutamate receptor, ionotropic, AMPA1 (alpha 1)
mm10_v2_chr4_+_119814495_119814526	4.20441	Hoxa4	ENSMUST00000106307.2|Hivep3|ENSMUSG00000028634.10|human immunodeficiency virus type I enhancer binding protein 3
mm10_v2_chr12_+_29528382_29528468	4.12722	Hoxa4	ENSMUST00000049784.9|Myt1l|ENSMUSG00000061911.8|myelin transcription factor 1-like
mm10_v2_chr4_+_144893077_144893103	4.01255	Hoxa4	ENSMUST00000154208.1|Dhrs3|ENSMUSG00000066026.8|dehydrogenase/reductase (SDR family) member 3
mm10_v2_chrX_+_159840463_159840481	3.72927	Hoxa4	ENSMUST00000112451.1|Sh3kbp1|ENSMUSG00000040990.11|SH3-domain kinase binding protein 1 	ENSMUST00000112453.2|Sh3kbp1|ENSMUSG00000040990.11|SH3-domain kinase binding protein 1
mm10_v2_chr4_+_144893127_144893151	3.67921	Hoxa4	ENSMUST00000142808.1|Dhrs3|ENSMUSG00000066026.8|dehydrogenase/reductase (SDR family) member 3
mm10_v2_chr18_+_37355271_37355271	3.66257	Hoxa4	ENSMUST00000051163.1|Pcdhb8|ENSMUSG00000045876.3|protocadherin beta 8
mm10_v2_chr18_+_37489465_37489465	3.63739	Hoxa4	ENSMUST00000055949.2|Pcdhb18|ENSMUSG00000048347.4|protocadherin beta 18
mm10_v2_chr18_+_37435602_37435636	3.5242	Hoxa4	ENSMUST00000055495.5|Pcdhb12|ENSMUSG00000043458.5|protocadherin beta 12
mm10_v2_chr8_-_84937347_84937367	3.08487	Hoxa4	ENSMUST00000109741.2|Mast1|ENSMUSG00000053693.10|microtubule associated serine/threonine kinase 1 	ENSMUST00000119820.1|Mast1|ENSMUSG00000053693.10|microtubule associated serine/threonine kinase 1
mm10_v2_chr4_+_101550411_101550594	3.07038	Hoxa4	ENSMUST00000094953.4|Dnajc6|ENSMUSG00000028528.10|DnaJ (Hsp40) homolog, subfamily C, member 6 	ENSMUST00000106933.1|Dnajc6|ENSMUSG00000028528.10|DnaJ (Hsp40) homolog, subfamily C, member 6
mm10_v2_chr2_-_6884975_6884996	2.9707	Hoxa4	ENSMUST00000114924.3|Celf2|ENSMUSG00000002107.12|CUGBP, Elav-like family member 2 	ENSMUST00000170438.1|Celf2|ENSMUSG00000002107.12|CUGBP, Elav-like family member 2 	ENSMUST00000114934.4|Celf2|ENSMUSG00000002107.12|CUGBP, Elav-like family member 2
mm10_v2_chr3_+_95164306_95164374	2.94898	Hoxa4	ENSMUST00000107217.1|Sema6c|ENSMUSG00000038777.13|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C 	ENSMUST00000168321.1|Sema6c|ENSMUSG00000038777.13|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C
mm10_v2_chr1_+_178529113_178529134	2.87998	Hoxa4	ENSMUST00000161017.1|Kif26b|ENSMUSG00000026494.6|kinesin family member 26B
mm10_v2_chr1_-_158356258_158356313	2.80294	Hoxa4	ENSMUST00000004133.8|Brinp2|ENSMUSG00000004031.8|bone morphogenic protein/retinoic acid inducible neural-specific 2
mm10_v2_chr2_-_65529275_65529404	2.79239	Hoxa4	ENSMUST00000126837.1|Scn3a|ENSMUSG00000057182.8|sodium channel, voltage-gated, type III, alpha
mm10_v2_chr13_+_42680565_42680623	2.71156	Hoxa4	ENSMUST00000128646.1|Phactr1|ENSMUSG00000054728.10|phosphatase and actin regulator 1
mm10_v2_chr5_-_122002340_122002368	2.70662	Hoxa4	ENSMUST00000134326.1|Cux2|ENSMUSG00000042589.12|cut-like homeobox 2
mm10_v2_chr18_+_37341702_37341728	2.68847	Hoxa4	ENSMUST00000053037.3|Pcdhb7|ENSMUSG00000045062.3|protocadherin beta 7
mm10_v2_chr9_-_49798729_49798855	2.68447	Hoxa4	ENSMUST00000166811.2|Ncam1|ENSMUSG00000039542.9|neural cell adhesion molecule 1
mm10_v2_chr2_-_6884940_6884957	2.55853	Hoxa4	ENSMUST00000183091.1|Celf2|ENSMUSG00000002107.12|CUGBP, Elav-like family member 2 	ENSMUST00000182851.1|Celf2|ENSMUSG00000002107.12|CUGBP, Elav-like family member 2
mm10_v2_chr2_+_65930117_65930190	2.40308	Hoxa4	ENSMUST00000176109.1|Csrnp3|ENSMUSG00000044647.10|cysteine-serine-rich nuclear protein 3
mm10_v2_chr8_+_47713266_47713266	2.38202	Hoxa4	ENSMUST00000180928.1|E030037K01Rik|ENSMUSG00000097706.1|RIKEN cDNA E030037K01 gene
mm10_v2_chr9_-_49798905_49798931	2.3475	Hoxa4	ENSMUST00000114476.2|Ncam1|ENSMUSG00000039542.9|neural cell adhesion molecule 1
mm10_v2_chr18_+_37447641_37447674	2.32161	Hoxa4	ENSMUST00000052387.3|Pcdhb14|ENSMUSG00000044043.3|protocadherin beta 14
mm10_v2_chr9_-_29412204_29412277	2.27645	Hoxa4	ENSMUST00000115237.1|Ntm|ENSMUSG00000059974.4|neurotrimin
mm10_v2_chr1_-_130729249_130729260	2.25916	Hoxa4	ENSMUST00000171479.1|Pfkfb2|ENSMUSG00000026409.8|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2
mm10_v2_chr17_-_43667015_43667163	2.2485	Hoxa4	ENSMUST00000024705.4|Slc25a27|ENSMUSG00000023912.9|solute carrier family 25, member 27
mm10_v2_chr15_+_18818895_18818947	2.22516	Hoxa4	ENSMUST00000166873.2|Cdh10|ENSMUSG00000022321.9|cadherin 10
mm10_v2_chr1_-_180193475_180193492	2.1955	Hoxa4	ENSMUST00000160482.1|Adck3|ENSMUSG00000026489.7|aarF domain containing kinase 3 	ENSMUST00000170472.1|Adck3|ENSMUSG00000026489.7|aarF domain containing kinase 3
mm10_v2_chr6_-_77979515_77979622	2.15613	Hoxa4	ENSMUST00000159626.1|Ctnna2|ENSMUSG00000063063.6|catenin (cadherin associated protein), alpha 2 	ENSMUST00000075340.5|Ctnna2|ENSMUSG00000063063.6|catenin (cadherin associated protein), alpha 2 	ENSMUST00000162273.1|Ctnna2|ENSMUSG00000063063.6|catenin (cadherin associated protein), alpha 2
mm10_v2_chr7_-_19699008_19699166	2.00341	Hoxa4	ENSMUST00000174355.1|Apoe|ENSMUSG00000002985.9|apolipoprotein E 	ENSMUST00000172983.1|Apoe|ENSMUSG00000002985.9|apolipoprotein E 	ENSMUST00000174710.1|Apoe|ENSMUSG00000002985.9|apolipoprotein E 	ENSMUST00000167646.2|Apoe|ENSMUSG00000002985.9|apolipoprotein E 	ENSMUST00000003066.9|Apoe|ENSMUSG00000002985.9|apolipoprotein E 	ENSMUST00000174064.1|Apoe|ENSMUSG00000002985.9|apolipoprotein E
mm10_v2_chr9_-_55919605_55919605	1.99912	Hoxa4	ENSMUST00000037408.8|Scaper|ENSMUSG00000034007.9|S phase cyclin A-associated protein in the ER
mm10_v2_chr14_-_108914237_108914257	1.97623	Hoxa4	ENSMUST00000100322.2|Slitrk1|ENSMUSG00000075478.2|SLIT and NTRK-like family, member 1
mm10_v2_chr5_+_137030275_137030295	1.95701	Hoxa4	ENSMUST00000041543.8|Vgf|ENSMUSG00000037428.8|VGF nerve growth factor inducible
mm10_v2_chr2_+_4400958_4400975	1.92947	Hoxa4	ENSMUST00000075767.7|Frmd4a|ENSMUSG00000026657.10|FERM domain containing 4A
mm10_v2_chr14_-_30353468_30353535	1.89915	Hoxa4	ENSMUST00000112249.1|Cacna1d|ENSMUSG00000015968.10|calcium channel, voltage-dependent, L type, alpha 1D subunit
mm10_v2_chr6_+_58833689_58833734	1.88031	Hoxa4	ENSMUST00000041401.8|Herc3|ENSMUSG00000029804.10|hect domain and RLD 3
mm10_v2_chr3_-_122619442_122619553	1.85833	Hoxa4	ENSMUST00000162947.1|Fnbp1l|ENSMUSG00000039735.9|formin binding protein 1-like
mm10_v2_chr19_-_28967794_28967852	1.82964	Hoxa4	ENSMUST00000162110.1|4430402I18Rik|ENSMUSG00000064202.9|RIKEN cDNA 4430402I18 gene
mm10_v2_chr15_-_77956658_77956723	1.78019	Hoxa4	ENSMUST00000117725.1|Foxred2|ENSMUSG00000016552.7|FAD-dependent oxidoreductase domain containing 2 	ENSMUST00000016696.6|Foxred2|ENSMUSG00000016552.7|FAD-dependent oxidoreductase domain containing 2
mm10_v2_chr9_+_18427543_18427543	1.74066	Hoxa4	ENSMUST00000053326.9|Gm5612|ENSMUSG00000074501.5|predicted gene 5612
mm10_v2_chr3_+_88965812_88965812	1.68773	Hoxa4	ENSMUST00000090933.4|Ash1l|ENSMUSG00000028053.7|ash1 (absent, small, or homeotic)-like (Drosophila)
mm10_v2_chr1_+_132298606_132298631	1.66862	Hoxa4	ENSMUST00000046071.4|Klhdc8a|ENSMUSG00000042115.4|kelch domain containing 8A
mm10_v2_chr3_-_146781351_146781431	1.64805	Hoxa4	ENSMUST00000005164.7|Prkacb|ENSMUSG00000005034.9|protein kinase, cAMP dependent, catalytic, beta
mm10_v2_chr18_+_37307445_37307462	1.64296	Hoxa4	ENSMUST00000056712.2|Pcdhb4|ENSMUSG00000045689.2|protocadherin beta 4
mm10_v2_chr6_+_86527312_86527401	1.61537	Hoxa4	ENSMUST00000181928.1|1600020E01Rik|ENSMUSG00000097048.1|RIKEN cDNA 1600020E01 gene
mm10_v2_chr2_+_70563435_70563461	1.60528	Hoxa4	ENSMUST00000123330.1|Gad1|ENSMUSG00000070880.4|glutamate decarboxylase 1
mm10_v2_chr3_+_86070915_86070915	1.59583	Hoxa4	ENSMUST00000182666.1|Sh3d19|ENSMUSG00000028082.7|SH3 domain protein D19
mm10_v2_chr1_-_67038824_67038872	1.59395	Hoxa4	ENSMUST00000119559.1|Lancl1|ENSMUSG00000026000.10|LanC (bacterial lantibiotic synthetase component C)-like 1 	ENSMUST00000149996.1|Lancl1|ENSMUSG00000026000.10|LanC (bacterial lantibiotic synthetase component C)-like 1 	ENSMUST00000027149.5|Lancl1|ENSMUSG00000026000.10|LanC (bacterial lantibiotic synthetase component C)-like 1 	ENSMUST00000113979.3|Lancl1|ENSMUSG00000026000.10|LanC (bacterial lantibiotic synthetase component C)-like 1
mm10_v2_chr19_-_57197435_57197460	1.57607	Hoxa4	ENSMUST00000111550.1|Ablim1|ENSMUSG00000025085.10|actin-binding LIM protein 1
mm10_v2_chr2_-_116065798_116065853	1.56427	Hoxa4	ENSMUST00000110907.1|Meis2|ENSMUSG00000027210.14|Meis homeobox 2 	ENSMUST00000110908.2|Meis2|ENSMUSG00000027210.14|Meis homeobox 2
mm10_v2_chr10_+_69534208_69534222	1.54876	Hoxa4	ENSMUST00000182439.1|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial 	ENSMUST00000092434.5|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial 	ENSMUST00000092432.5|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial 	ENSMUST00000092431.5|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial 	ENSMUST00000054167.8|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial 	ENSMUST00000047061.6|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial
mm10_v2_chr11_+_29463735_29463888	1.54875	Hoxa4	ENSMUST00000155854.1|Ccdc88a|ENSMUSG00000032740.10|coiled coil domain containing 88A
mm10_v2_chr5_-_111761697_111761727	1.52731	Hoxa4	ENSMUST00000129146.1|E130006D01Rik|ENSMUSG00000085271.1|RIKEN cDNA E130006D01 gene 	ENSMUST00000137398.1|E130006D01Rik|ENSMUSG00000085271.1|RIKEN cDNA E130006D01 gene 	ENSMUST00000129065.1|E130006D01Rik|ENSMUSG00000085271.1|RIKEN cDNA E130006D01 gene
mm10_v2_chr1_+_180101144_180101144	1.5214	Hoxa4	ENSMUST00000133890.1|Cdc42bpa|ENSMUSG00000026490.11|CDC42 binding protein kinase alpha
mm10_v2_chr4_+_101507947_101508032	1.50959	Hoxa4	ENSMUST00000149047.1|Dnajc6|ENSMUSG00000028528.10|DnaJ (Hsp40) homolog, subfamily C, member 6 	ENSMUST00000106929.3|Dnajc6|ENSMUSG00000028528.10|DnaJ (Hsp40) homolog, subfamily C, member 6
mm10_v2_chr18_+_37300799_37300835	1.4966	Hoxa4	ENSMUST00000051754.1|Pcdhb3|ENSMUSG00000045498.1|protocadherin beta 3
mm10_v2_chr2_+_124610573_124610613	1.49285	Hoxa4	ENSMUST00000103239.3|Sema6d|ENSMUSG00000027200.11|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D 	ENSMUST00000103240.2|Sema6d|ENSMUSG00000027200.11|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D
mm10_v2_chr19_-_57197377_57197417	1.46007	Hoxa4	ENSMUST00000111546.1|Ablim1|ENSMUSG00000025085.10|actin-binding LIM protein 1
mm10_v2_chr5_+_76809964_76810010	1.4271	Hoxa4	ENSMUST00000120818.1|C530008M17Rik|ENSMUSG00000036377.12|RIKEN cDNA C530008M17 gene
mm10_v2_chr18_+_37819543_37819570	1.42229	Hoxa4	ENSMUST00000055935.5|Pcdhga9|ENSMUSG00000023036.8|protocadherin gamma subfamily A, 9
mm10_v2_chr12_-_84361802_84361838	1.42206	Hoxa4	ENSMUST00000021659.1|Fam161b|ENSMUSG00000021234.3|family with sequence similarity 161, member B 	ENSMUST00000065536.2|Fam161b|ENSMUSG00000021234.3|family with sequence similarity 161, member B
mm10_v2_chrX_+_136822781_136822840	1.40753	Hoxa4	ENSMUST00000113085.1|Plp1|ENSMUSG00000031425.9|proteolipid protein (myelin) 1
mm10_v2_chr2_-_5676046_5676065	1.39055	Hoxa4	ENSMUST00000114987.3|Camk1d|ENSMUSG00000039145.10|calcium/calmodulin-dependent protein kinase ID
mm10_v2_chr2_-_116065047_116065133	1.37238	Hoxa4	ENSMUST00000028639.6|Meis2|ENSMUSG00000027210.14|Meis homeobox 2 	ENSMUST00000102538.4|Meis2|ENSMUSG00000027210.14|Meis homeobox 2
mm10_v2_chr7_+_34251038_34251038	1.34788	Hoxa4	ENSMUST00000105172.1|Gm6096|ENSMUSG00000078380.1|predicted gene 6096
mm10_v2_chr19_-_57197556_57197631	1.34457	Hoxa4	ENSMUST00000099294.2|Ablim1|ENSMUSG00000025085.10|actin-binding LIM protein 1
mm10_v2_chr19_-_57197496_57197536	1.27904	Hoxa4	ENSMUST00000111544.1|Ablim1|ENSMUSG00000025085.10|actin-binding LIM protein 1
mm10_v2_chr7_+_30121915_30122001	1.26378	Hoxa4	ENSMUST00000098596.3|Zfp382|ENSMUSG00000074220.3|zinc finger protein 382 	ENSMUST00000153792.1|Zfp382|ENSMUSG00000074220.3|zinc finger protein 382
mm10_v2_chr18_+_86711059_86711110	1.26269	Hoxa4	ENSMUST00000068423.3|Cbln2|ENSMUSG00000024647.8|cerebellin 2 precursor protein
mm10_v2_chr10_-_127121125_127121160	1.2592	Hoxa4	ENSMUST00000164259.1|Os9|ENSMUSG00000040462.6|amplified in osteosarcoma 	ENSMUST00000080975.4|Os9|ENSMUSG00000040462.6|amplified in osteosarcoma
mm10_v2_chr16_-_64786321_64786321	1.23853	Hoxa4	ENSMUST00000052588.4|Zfp654|ENSMUSG00000047141.4|zinc finger protein 654
mm10_v2_chr9_+_72274966_72275013	1.23702	Hoxa4	ENSMUST00000183410.1|Zfp280d|ENSMUSG00000038535.11|zinc finger protein 280D
mm10_v2_chr6_+_8949670_8949686	1.19795	Hoxa4	ENSMUST00000060369.3|Nxph1|ENSMUSG00000046178.3|neurexophilin 1
mm10_v2_chr7_+_79273201_79273270	1.17182	Hoxa4	ENSMUST00000037315.6|Abhd2|ENSMUSG00000039202.6|abhydrolase domain containing 2
mm10_v2_chr1_+_165788746_165788769	1.17	Hoxa4	ENSMUST00000161559.2|Cd247|ENSMUSG00000005763.9|CD247 antigen
mm10_v2_chr19_+_11965817_11965887	1.14316	Hoxa4	ENSMUST00000025590.9|Osbp|ENSMUSG00000024687.10|oxysterol binding protein
mm10_v2_chr16_-_76373827_76373852	1.11833	Hoxa4	ENSMUST00000121927.1|Nrip1|ENSMUSG00000048490.7|nuclear receptor interacting protein 1
mm10_v2_chr12_+_91400990_91401022	1.10156	Hoxa4	ENSMUST00000021346.7|Tshr|ENSMUSG00000020963.8|thyroid stimulating hormone receptor 	ENSMUST00000021343.6|Tshr|ENSMUSG00000020963.8|thyroid stimulating hormone receptor
mm10_v2_chr18_-_79109391_79109510	1.10064	Hoxa4	ENSMUST00000025430.8|Setbp1|ENSMUSG00000024548.9|SET binding protein 1 	ENSMUST00000161465.2|Setbp1|ENSMUSG00000024548.9|SET binding protein 1
mm10_v2_chr12_+_65075582_65075617	1.10001	Hoxa4	ENSMUST00000058889.4|Fancm|ENSMUSG00000055884.7|Fanconi anemia, complementation group M
mm10_v2_chr1_+_165788681_165788728	1.09294	Hoxa4	ENSMUST00000161971.1|Cd247|ENSMUSG00000005763.9|CD247 antigen 	ENSMUST00000178336.1|Cd247|ENSMUSG00000005763.9|CD247 antigen 	ENSMUST00000005907.5|Cd247|ENSMUSG00000005763.9|CD247 antigen 	ENSMUST00000027849.4|Cd247|ENSMUSG00000005763.9|CD247 antigen
mm10_v2_chr18_+_86711520_86711650	1.08866	Hoxa4	ENSMUST00000122464.1|Cbln2|ENSMUSG00000024647.8|cerebellin 2 precursor protein
mm10_v2_chr5_-_124187150_124187225	1.07771	Hoxa4	ENSMUST00000161938.1|Pitpnm2|ENSMUSG00000029406.9|phosphatidylinositol transfer protein, membrane-associated 2
mm10_v2_chr3_+_5218546_5218561	1.06278	Hoxa4	ENSMUST00000026284.6|Zfhx4|ENSMUSG00000025255.12|zinc finger homeodomain 4
mm10_v2_chr4_+_105790534_105790534	1.03151	Hoxa4	ENSMUST00000185012.1|Gm12728|ENSMUSG00000083780.2|predicted gene 12728
mm10_v2_chr18_+_76059458_76059501	1.02977	Hoxa4	ENSMUST00000167921.1|Zbtb7c|ENSMUSG00000044646.8|zinc finger and BTB domain containing 7C
mm10_v2_chr2_+_83644435_83644490	1.02754	Hoxa4	ENSMUST00000081591.6|Zc3h15|ENSMUSG00000027091.8|zinc finger CCCH-type containing 15
mm10_v2_chr5_+_30814722_30814776	0.996278	Hoxa4	ENSMUST00000114724.1|Mapre3|ENSMUSG00000029166.8|microtubule-associated protein, RP/EB family, member 3
mm10_v2_chrX_+_136822671_136822780	0.992125	Hoxa4	ENSMUST00000033800.6|Plp1|ENSMUSG00000031425.9|proteolipid protein (myelin) 1
mm10_v2_chr12_+_55598917_55598917	0.987119	Hoxa4	ENSMUST00000051857.3|Insm2|ENSMUSG00000045440.3|insulinoma-associated 2
mm10_v2_chr19_+_8840519_8840549	0.976672	Hoxa4	ENSMUST00000086058.6|Bscl2|ENSMUSG00000071657.6|Bernardinelli-Seip congenital lipodystrophy 2 homolog (human)
mm10_v2_chr6_+_97210689_97210728	0.966319	Hoxa4	ENSMUST00000044681.6|Arl6ip5|ENSMUSG00000035199.6|ADP-ribosylation factor-like 6 interacting protein 5
mm10_v2_chr10_+_39612934_39612934	0.957733	Hoxa4	ENSMUST00000019987.6|Traf3ip2|ENSMUSG00000019842.6|TRAF3 interacting protein 2
mm10_v2_chr12_+_10390756_10390836	0.952345	Hoxa4	ENSMUST00000020947.5|Rdh14|ENSMUSG00000020621.5|retinol dehydrogenase 14 (all-trans and 9-cis)
mm10_v2_chr10_-_70655934_70655972	0.950838	Hoxa4	ENSMUST00000162144.1|Phyhipl|ENSMUSG00000037747.3|phytanoyl-CoA hydroxylase interacting protein-like 	ENSMUST00000162793.1|Phyhipl|ENSMUSG00000037747.3|phytanoyl-CoA hydroxylase interacting protein-like
mm10_v2_chr3_-_88177671_88177785	0.942178	Hoxa4	ENSMUST00000181837.1|1700113A16Rik|ENSMUSG00000096935.1|RIKEN cDNA 1700113A16 gene
mm10_v2_chr1_+_180111339_180111339	0.936463	Hoxa4	ENSMUST00000145181.1|Cdc42bpa|ENSMUSG00000026490.11|CDC42 binding protein kinase alpha
mm10_v2_chr17_-_71459300_71459300	0.935987	Hoxa4	ENSMUST00000183937.1|Gm4707|ENSMUSG00000091831.4|predicted gene 4707
mm10_v2_chrX_-_150814265_150814345	0.905999	Hoxa4	ENSMUST00000026302.6|Maged2|ENSMUSG00000025268.9|melanoma antigen, family D, 2 	ENSMUST00000129768.1|Maged2|ENSMUSG00000025268.9|melanoma antigen, family D, 2 	ENSMUST00000112699.2|Maged2|ENSMUSG00000025268.9|melanoma antigen, family D, 2
mm10_v2_chr13_+_58807884_58807902	0.887952	Hoxa4	ENSMUST00000079828.5|Ntrk2|ENSMUSG00000055254.8|neurotrophic tyrosine kinase, receptor, type 2
mm10_v2_chr4_-_118180043_118180054	0.886494	Hoxa4	ENSMUST00000106406.2|Kdm4a|ENSMUSG00000033326.9|lysine (K)-specific demethylase 4A
mm10_v2_chr5_-_146220901_146220987	0.883581	Hoxa4	ENSMUST00000169407.2|Rnf6|ENSMUSG00000029634.9|ring finger protein (C3H2C3 type) 6 	ENSMUST00000161331.1|Rnf6|ENSMUSG00000029634.9|ring finger protein (C3H2C3 type) 6 	ENSMUST00000159074.2|Rnf6|ENSMUSG00000029634.9|ring finger protein (C3H2C3 type) 6 	ENSMUST00000067837.3|Rnf6|ENSMUSG00000029634.9|ring finger protein (C3H2C3 type) 6
mm10_v2_chr18_+_23752333_23752401	0.867873	Hoxa4	ENSMUST00000170802.1|Mapre2|ENSMUSG00000024277.8|microtubule-associated protein, RP/EB family, member 2 	ENSMUST00000155708.1|Mapre2|ENSMUSG00000024277.8|microtubule-associated protein, RP/EB family, member 2 	ENSMUST00000118826.2|Mapre2|ENSMUSG00000024277.8|microtubule-associated protein, RP/EB family, member 2
mm10_v2_chr17_-_26886175_26886248	0.837944	Hoxa4	ENSMUST00000108741.2|Gm17382|ENSMUSG00000078838.2|predicted gene, 17382
mm10_v2_chr12_+_38780817_38780854	0.836383	Hoxa4	ENSMUST00000160856.1|Etv1|ENSMUSG00000004151.10|ets variant gene 1
mm10_v2_chr4_-_129378116_129378116	0.834967	Hoxa4	ENSMUST00000030610.2|Zbtb8a|ENSMUSG00000028807.2|zinc finger and BTB domain containing 8a
mm10_v2_chr15_-_99820072_99820154	0.823535	Hoxa4	ENSMUST00000109024.2|Lima1|ENSMUSG00000023022.7|LIM domain and actin binding 1
mm10_v2_chr4_-_118179946_118180035	0.821145	Hoxa4	ENSMUST00000050288.8|Kdm4a|ENSMUSG00000033326.9|lysine (K)-specific demethylase 4A 	ENSMUST00000106403.1|Kdm4a|ENSMUSG00000033326.9|lysine (K)-specific demethylase 4A
mm10_v2_chrX_+_66653003_66653031	0.778259	Hoxa4	ENSMUST00000036043.4|Slitrk2|ENSMUSG00000036790.5|SLIT and NTRK-like family, member 2
mm10_v2_chr16_-_63864114_63864182	0.775272	Hoxa4	ENSMUST00000064405.6|Epha3|ENSMUSG00000052504.6|Eph receptor A3
mm10_v2_chr3_+_5218516_5218544	0.754331	Hoxa4	ENSMUST00000175866.1|Zfhx4|ENSMUSG00000025255.12|zinc finger homeodomain 4
mm10_v2_chr12_-_80760541_80760730	0.745556	Hoxa4	ENSMUST00000073251.6|Ccdc177|ENSMUSG00000062961.6|coiled-coil domain containing 177
mm10_v2_chr10_+_127421124_127421203	0.735492	Hoxa4	ENSMUST00000170336.1|R3hdm2|ENSMUSG00000025404.9|R3H domain containing 2
mm10_v2_chr6_-_56901870_56901891	0.728062	Hoxa4	ENSMUST00000101367.2|Nt5c3|ENSMUSG00000029780.8|5'-nucleotidase, cytosolic III
mm10_v2_chr18_-_37178493_37178531	0.718803	Hoxa4	ENSMUST00000181887.1|Gm10544|ENSMUSG00000097430.1|predicted gene 10544 	ENSMUST00000180516.1|Gm10544|ENSMUSG00000097430.1|predicted gene 10544
mm10_v2_chr17_+_24850654_24850683	0.711895	Hoxa4	ENSMUST00000130989.1|Hagh|ENSMUSG00000024158.11|hydroxyacyl glutathione hydrolase 	ENSMUST00000024974.9|Hagh|ENSMUSG00000024158.11|hydroxyacyl glutathione hydrolase
mm10_v2_chr15_+_55307743_55307762	0.710545	Hoxa4	ENSMUST00000023053.5|Col14a1|ENSMUSG00000022371.9|collagen, type XIV, alpha 1 	ENSMUST00000110221.2|Col14a1|ENSMUSG00000022371.9|collagen, type XIV, alpha 1 	ENSMUST00000110217.3|Col14a1|ENSMUSG00000022371.9|collagen, type XIV, alpha 1
mm10_v2_chr6_+_77242644_77242697	0.683481	Hoxa4	ENSMUST00000159616.1|Lrrtm1|ENSMUSG00000060780.2|leucine rich repeat transmembrane neuronal 1
mm10_v2_chr6_+_124304646_124304671	0.672351	Hoxa4	ENSMUST00000112541.2|Cd163|ENSMUSG00000008845.3|CD163 antigen 	ENSMUST00000032234.2|Cd163|ENSMUSG00000008845.3|CD163 antigen
mm10_v2_chrX_-_20950597_20950613	0.657578	Hoxa4	ENSMUST00000009550.7|Elk1|ENSMUSG00000009406.7|ELK1, member of ETS oncogene family
mm10_v2_chr3_+_116562965_116563004	0.654689	Hoxa4	ENSMUST00000029573.5|Lrrc39|ENSMUSG00000027961.5|leucine rich repeat containing 39
mm10_v2_chr6_+_77242715_77242729	0.644889	Hoxa4	ENSMUST00000161677.1|Lrrtm1|ENSMUSG00000060780.2|leucine rich repeat transmembrane neuronal 1
mm10_v2_chrM_+_10167_10167	0.617327	Hoxa4	ENSMUST00000082414.1|mt-Nd4|ENSMUSG00000064363.1|mitochondrially encoded NADH dehydrogenase 4
mm10_v2_chr3_-_146682410_146682522	0.616154	Hoxa4	ENSMUST00000124931.1|Samd13|ENSMUSG00000048652.6|sterile alpha motif domain containing 13 	ENSMUST00000147113.1|Samd13|ENSMUSG00000048652.6|sterile alpha motif domain containing 13
mm10_v2_chr1_+_165301863_165301863	0.600284	Hoxa4	ENSMUST00000178700.1|Gpr161|ENSMUSG00000040836.9|G protein-coupled receptor 161
mm10_v2_chr17_+_24470393_24470481	0.589943	Hoxa4	ENSMUST00000053024.6|Pgp|ENSMUSG00000043445.6|phosphoglycolate phosphatase
mm10_v2_chr9_-_42399915_42399929	0.578734	Hoxa4	ENSMUST00000042190.7|Tecta|ENSMUSG00000037705.7|tectorin alpha
mm10_v2_chr11_-_30986326_30986372	0.562672	Hoxa4	ENSMUST00000020553.4|Chac2|ENSMUSG00000020309.6|ChaC, cation transport regulator 2 	ENSMUST00000101394.4|Chac2|ENSMUSG00000020309.6|ChaC, cation transport regulator 2
mm10_v2_chr6_+_124916863_124916863	0.56085	Hoxa4	ENSMUST00000069553.2|A230083G16Rik|ENSMUSG00000055818.2|RIKEN cDNA A230083G16 gene
mm10_v2_chr12_+_84362029_84362064	0.56017	Hoxa4	ENSMUST00000110278.1|Coq6|ENSMUSG00000021235.7|coenzyme Q6 homolog (yeast) 	ENSMUST00000145522.1|Coq6|ENSMUSG00000021235.7|coenzyme Q6 homolog (yeast)
mm10_v2_chrX_+_48623737_48623790	0.559705	Hoxa4	ENSMUST00000114936.1|Slc25a14|ENSMUSG00000031105.10|solute carrier family 25 (mitochondrial carrier, brain), member 14
mm10_v2_chr8_-_67974567_67974596	0.552912	Hoxa4	ENSMUST00000098696.3|Psd3|ENSMUSG00000030465.12|pleckstrin and Sec7 domain containing 3 	ENSMUST00000038959.9|Psd3|ENSMUSG00000030465.12|pleckstrin and Sec7 domain containing 3 	ENSMUST00000093469.4|Psd3|ENSMUSG00000030465.12|pleckstrin and Sec7 domain containing 3
mm10_v2_chr7_+_131966446_131966469	0.549609	Hoxa4	ENSMUST00000045840.4|Gpr26|ENSMUSG00000040125.4|G protein-coupled receptor 26
mm10_v2_chr4_+_138775735_138775784	0.547228	Hoxa4	ENSMUST00000030528.2|Pla2g2d|ENSMUSG00000041202.6|phospholipase A2, group IID
mm10_v2_chr10_+_127420867_127420916	0.529631	Hoxa4	ENSMUST00000064793.6|R3hdm2|ENSMUSG00000025404.9|R3H domain containing 2
mm10_v2_chr6_+_29468068_29468113	0.509301	Hoxa4	ENSMUST00000143101.1|Atp6v1f|ENSMUSG00000004285.6|ATPase, H+ transporting, lysosomal V1 subunit F
mm10_v2_chr6_+_29467718_29467764	0.506722	Hoxa4	ENSMUST00000004396.6|Atp6v1f|ENSMUSG00000004285.6|ATPase, H+ transporting, lysosomal V1 subunit F
mm10_v2_chr17_+_24850515_24850591	0.475507	Hoxa4	ENSMUST00000154363.1|Hagh|ENSMUSG00000024158.11|hydroxyacyl glutathione hydrolase 	ENSMUST00000169200.1|Hagh|ENSMUSG00000024158.11|hydroxyacyl glutathione hydrolase
mm10_v2_chr12_+_38783503_38783527	0.462835	Hoxa4	ENSMUST00000159334.1|Etv1|ENSMUSG00000004151.10|ets variant gene 1
mm10_v2_chr3_+_94837533_94837567	0.449824	Hoxa4	ENSMUST00000107270.2|Pogz|ENSMUSG00000038902.8|pogo transposable element with ZNF domain
mm10_v2_chr1_+_143739016_143739050	0.446727	Hoxa4	ENSMUST00000145969.1|Glrx2|ENSMUSG00000018196.12|glutaredoxin 2 (thioltransferase)
mm10_v2_chr9_-_110624361_110624439	0.431444	Hoxa4	ENSMUST00000035069.9|Nradd|ENSMUSG00000032491.10|neurotrophin receptor associated death domain
mm10_v2_chr3_-_103791537_103791563	0.427462	Hoxa4	ENSMUST00000118317.1|Hipk1|ENSMUSG00000008730.11|homeodomain interacting protein kinase 1
mm10_v2_chr6_+_54040078_54040091	0.415282	Hoxa4	ENSMUST00000127323.2|Chn2|ENSMUSG00000004633.11|chimerin (chimaerin) 2
mm10_v2_chr1_+_143739551_143739566	0.414758	Hoxa4	ENSMUST00000050491.9|Glrx2|ENSMUSG00000018196.12|glutaredoxin 2 (thioltransferase)
mm10_v2_chr3_+_68572245_68572392	0.411277	Hoxa4	ENSMUST00000170788.2|Schip1|ENSMUSG00000027777.9|schwannomin interacting protein 1
mm10_v2_chr10_+_127420334_127420348	0.392429	Hoxa4	ENSMUST00000171434.1|R3hdm2|ENSMUSG00000025404.9|R3H domain containing 2
mm10_v2_chr1_+_45981548_45981548	0.389583	Hoxa4	ENSMUST00000085632.2|Rpl23a-ps1|ENSMUSG00000070896.1|ribosomal protein 23A, pseudogene 1
mm10_v2_chr12_+_84361968_84362018	0.381233	Hoxa4	ENSMUST00000021661.6|Coq6|ENSMUSG00000021235.7|coenzyme Q6 homolog (yeast)
mm10_v2_chr13_+_38204928_38204962	0.374803	Hoxa4	ENSMUST00000091641.5|Snrnp48|ENSMUSG00000021431.8|small nuclear ribonucleoprotein 48 (U11/U12) 	ENSMUST00000178564.1|Snrnp48|ENSMUSG00000021431.8|small nuclear ribonucleoprotein 48 (U11/U12)
mm10_v2_chr4_+_130107556_130107606	0.371853	Hoxa4	ENSMUST00000030563.5|Pef1|ENSMUSG00000028779.10|penta-EF hand domain containing 1
mm10_v2_chr1_-_152766281_152766319	0.371592	Hoxa4	ENSMUST00000111859.1|Rgl1|ENSMUSG00000026482.7|ral guanine nucleotide dissociation stimulator,-like 1 	ENSMUST00000148865.1|Rgl1|ENSMUSG00000026482.7|ral guanine nucleotide dissociation stimulator,-like 1
mm10_v2_chr10_+_53337686_53337724	0.364623	Hoxa4	ENSMUST00000046221.6|Pln|ENSMUSG00000038583.6|phospholamban 	ENSMUST00000163319.1|Pln|ENSMUSG00000038583.6|phospholamban
mm10_v2_chr9_+_44398176_44398176	0.357498	Hoxa4	ENSMUST00000165839.1|Slc37a4|ENSMUSG00000032114.8|solute carrier family 37 (glucose-6-phosphate transporter), member 4
mm10_v2_chr11_-_116189542_116189575	0.348198	Hoxa4	ENSMUST00000148601.1|Acox1|ENSMUSG00000020777.10|acyl-Coenzyme A oxidase 1, palmitoyl
mm10_v2_chr10_+_18469958_18469981	0.337763	Hoxa4	ENSMUST00000162891.1|Nhsl1|ENSMUSG00000039835.9|NHS-like 1 	ENSMUST00000100054.3|Nhsl1|ENSMUSG00000039835.9|NHS-like 1
mm10_v2_chr16_+_22857845_22857914	0.337574	Hoxa4	ENSMUST00000004574.7|Dnajb11|ENSMUSG00000004460.10|DnaJ (Hsp40) homolog, subfamily B, member 11 	ENSMUST00000178320.1|Dnajb11|ENSMUSG00000004460.10|DnaJ (Hsp40) homolog, subfamily B, member 11 	ENSMUST00000166487.2|Dnajb11|ENSMUSG00000004460.10|DnaJ (Hsp40) homolog, subfamily B, member 11
mm10_v2_chr13_-_117025505_117025541	0.33637	Hoxa4	ENSMUST00000022239.6|Parp8|ENSMUSG00000021725.8|poly (ADP-ribose) polymerase family, member 8
mm10_v2_chr10_+_102158858_102158889	0.325943	Hoxa4	ENSMUST00000138522.1|Mgat4c|ENSMUSG00000019888.9|mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme C (putative) 	ENSMUST00000163753.1|Mgat4c|ENSMUSG00000019888.9|mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme C (putative) 	ENSMUST00000138016.1|Mgat4c|ENSMUSG00000019888.9|mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme C (putative)
mm10_v2_chr1_+_143739573_143739642	0.321068	Hoxa4	ENSMUST00000111957.3|Glrx2|ENSMUSG00000018196.12|glutaredoxin 2 (thioltransferase) 	ENSMUST00000145571.1|Glrx2|ENSMUSG00000018196.12|glutaredoxin 2 (thioltransferase)
mm10_v2_chr12_+_38780284_38780349	0.317701	Hoxa4	ENSMUST00000162563.1|Etv1|ENSMUSG00000004151.10|ets variant gene 1 	ENSMUST00000161164.1|Etv1|ENSMUSG00000004151.10|ets variant gene 1 	ENSMUST00000160996.1|Etv1|ENSMUSG00000004151.10|ets variant gene 1
mm10_v2_chr1_-_5070281_5070288	0.306308	Hoxa4	ENSMUST00000147158.1|Rgs20|ENSMUSG00000002459.11|regulator of G-protein signaling 20 	ENSMUST00000118000.1|Rgs20|ENSMUSG00000002459.11|regulator of G-protein signaling 20
mm10_v2_chr11_+_103966716_103966871	0.299826	Hoxa4	ENSMUST00000057921.3|Arf2|ENSMUSG00000062421.7|ADP-ribosylation factor 2 	ENSMUST00000063347.5|Arf2|ENSMUSG00000062421.7|ADP-ribosylation factor 2
mm10_v2_chr5_-_137531204_137531297	0.296609	Hoxa4	ENSMUST00000150063.2|Gnb2|ENSMUSG00000029713.9|guanine nucleotide binding protein (G protein), beta 2
mm10_v2_chr15_+_85116829_85116829	0.292691	Hoxa4	ENSMUST00000105085.1|Gm10923|ENSMUSG00000078289.1|predicted gene 10923
mm10_v2_chr17_+_45734506_45734630	0.279068	Hoxa4	ENSMUST00000180558.1|F630040K05Rik|ENSMUSG00000097727.1|RIKEN cDNA F630040K05 gene
mm10_v2_chr18_-_42579652_42579790	0.277502	Hoxa4	ENSMUST00000054738.3|Gpr151|ENSMUSG00000042816.3|G protein-coupled receptor 151
mm10_v2_chr8_+_4238733_4238767	0.266742	Hoxa4	ENSMUST00000110998.2|Map2k7|ENSMUSG00000002948.12|mitogen-activated protein kinase kinase 7 	ENSMUST00000062686.4|Map2k7|ENSMUSG00000002948.12|mitogen-activated protein kinase kinase 7
mm10_v2_chr12_+_84361636_84361657	0.248688	Hoxa4	ENSMUST00000110276.1|Coq6|ENSMUSG00000021235.7|coenzyme Q6 homolog (yeast)
mm10_v2_chr15_-_82912134_82912190	0.240586	Hoxa4	ENSMUST00000048966.5|Tcf20|ENSMUSG00000041852.8|transcription factor 20 	ENSMUST00000109510.2|Tcf20|ENSMUSG00000041852.8|transcription factor 20
mm10_v2_chrX_-_59166080_59166164	0.234135	Hoxa4	ENSMUST00000119306.1|Fgf13|ENSMUSG00000031137.11|fibroblast growth factor 13
mm10_v2_chr13_-_21832194_21832198	0.227501	Hoxa4	ENSMUST00000102979.1|Hist1h4n|ENSMUSG00000069305.3|histone cluster 1, H4n
mm10_v2_chr3_+_5218589_5218614	0.207357	Hoxa4	ENSMUST00000177488.1|Zfhx4|ENSMUSG00000025255.12|zinc finger homeodomain 4
mm10_v2_chr4_+_109343029_109343081	0.200906	Hoxa4	ENSMUST00000030281.5|Eps15|ENSMUSG00000028552.7|epidermal growth factor receptor pathway substrate 15
mm10_v2_chr3_-_130730375_130730398	0.195253	Hoxa4	ENSMUST00000079085.6|Rpl34|ENSMUSG00000062006.6|ribosomal protein L34
mm10_v2_chr9_-_65885024_65885069	0.193507	Hoxa4	ENSMUST00000122410.1|Trip4|ENSMUSG00000032386.9|thyroid hormone receptor interactor 4 	ENSMUST00000117083.1|Trip4|ENSMUSG00000032386.9|thyroid hormone receptor interactor 4
mm10_v2_chr15_+_99055164_99055183	0.185929	Hoxa4	ENSMUST00000047104.7|Prph|ENSMUSG00000023484.7|peripherin 	ENSMUST00000024249.3|Prph|ENSMUSG00000023484.7|peripherin
mm10_v2_chr2_-_93849679_93849836	0.183815	Hoxa4	ENSMUST00000068513.4|Accs|ENSMUSG00000040272.8|1-aminocyclopropane-1-carboxylate synthase (non-functional) 	ENSMUST00000041593.8|Accs|ENSMUSG00000040272.8|1-aminocyclopropane-1-carboxylate synthase (non-functional) 	ENSMUST00000130077.1|Accs|ENSMUSG00000040272.8|1-aminocyclopropane-1-carboxylate synthase (non-functional)
mm10_v2_chr3_-_61365951_61365951	0.181043	Hoxa4	ENSMUST00000066298.2|B430305J03Rik|ENSMUSG00000053706.2|RIKEN cDNA B430305J03 gene
mm10_v2_chr4_+_5724304_5724357	0.171343	Hoxa4	ENSMUST00000108380.1|Fam110b|ENSMUSG00000049119.8|family with sequence similarity 110, member B
mm10_v2_chr8_+_120488416_120488490	0.168215	Hoxa4	ENSMUST00000034279.9|Gse1|ENSMUSG00000031822.12|genetic suppressor element 1
mm10_v2_chr7_-_35056467_35056556	0.147224	Hoxa4	ENSMUST00000130491.1|Cebpg|ENSMUSG00000056216.8|CCAAT/enhancer binding protein (C/EBP), gamma
mm10_v2_chr1_-_23909687_23909706	0.135796	Hoxa4	ENSMUST00000129254.1|Smap1|ENSMUSG00000026155.7|small ArfGAP 1
mm10_v2_chr6_-_92534855_92534890	0.13531	Hoxa4	ENSMUST00000113446.1|Prickle2|ENSMUSG00000030020.7|prickle homolog 2 (Drosophila)
mm10_v2_chr1_-_190170671_190170744	0.11194	Hoxa4	ENSMUST00000175916.1|Prox1|ENSMUSG00000010175.7|prospero-related homeobox 1
mm10_v2_chr8_-_60954726_60954790	0.105198	Hoxa4	ENSMUST00000110302.1|Clcn3|ENSMUSG00000004319.9|chloride channel 3
mm10_v2_chr19_-_42752710_42752775	0.0975998	Hoxa4	ENSMUST00000076505.3|Pyroxd2|ENSMUSG00000060224.3|pyridine nucleotide-disulphide oxidoreductase domain 2
mm10_v2_chr6_+_106769120_106769234	0.0914567	Hoxa4	ENSMUST00000113247.1|Trnt1|ENSMUSG00000013736.10|tRNA nucleotidyl transferase, CCA-adding, 1 	ENSMUST00000113249.1|Trnt1|ENSMUSG00000013736.10|tRNA nucleotidyl transferase, CCA-adding, 1 	ENSMUST00000057578.9|Trnt1|ENSMUSG00000013736.10|tRNA nucleotidyl transferase, CCA-adding, 1 	ENSMUST00000113248.1|Trnt1|ENSMUSG00000013736.10|tRNA nucleotidyl transferase, CCA-adding, 1
mm10_v2_chr6_+_134981998_134982002	0.083428	Hoxa4	ENSMUST00000167323.1|Apold1|ENSMUSG00000090698.1|apolipoprotein L domain containing 1
mm10_v2_chrX_+_7579666_7579693	0.0814645	Hoxa4	ENSMUST00000115740.1|Foxp3|ENSMUSG00000039521.6|forkhead box P3 	ENSMUST00000115739.1|Foxp3|ENSMUSG00000039521.6|forkhead box P3
mm10_v2_chr11_-_121673103_121673153	0.0808152	Hoxa4	ENSMUST00000067399.7|B3gntl1|ENSMUSG00000046605.8|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like 1 	ENSMUST00000062654.7|B3gntl1|ENSMUSG00000046605.8|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like 1
mm10_v2_chr16_-_22857514_22857576	0.0776685	Hoxa4	ENSMUST00000004576.6|Tbccd1|ENSMUSG00000004462.6|TBCC domain containing 1
mm10_v2_chr12_+_38781093_38781129	0.0776324	Hoxa4	ENSMUST00000161513.1|Etv1|ENSMUSG00000004151.10|ets variant gene 1
mm10_v2_chr3_+_94837702_94837723	0.0654095	Hoxa4	ENSMUST00000107266.1|Pogz|ENSMUSG00000038902.8|pogo transposable element with ZNF domain 	ENSMUST00000042402.5|Pogz|ENSMUSG00000038902.8|pogo transposable element with ZNF domain 	ENSMUST00000107269.1|Pogz|ENSMUSG00000038902.8|pogo transposable element with ZNF domain
mm10_v2_chr5_+_64812336_64812350	0.0631313	Hoxa4	ENSMUST00000166409.1|Klf3|ENSMUSG00000029178.8|Kruppel-like factor 3 (basic)
mm10_v2_chr3_-_130730310_130730352	0.0616934	Hoxa4	ENSMUST00000062601.7|Rpl34|ENSMUSG00000062006.6|ribosomal protein L34
mm10_v2_chr19_-_38224096_38224183	0.0567558	Hoxa4	ENSMUST00000067167.5|Fra10ac1|ENSMUSG00000054237.5|FRA10AC1 homolog (human)
mm10_v2_chr11_-_30268169_30268191	0.051288	Hoxa4	ENSMUST00000006629.7|Sptbn1|ENSMUSG00000020315.12|spectrin beta, non-erythrocytic 1
mm10_v2_chr5_-_122614445_122614544	0.026483	Hoxa4	ENSMUST00000127220.1|Ift81|ENSMUSG00000029469.8|intraflagellar transport 81 	ENSMUST00000031426.7|Ift81|ENSMUSG00000029469.8|intraflagellar transport 81
mm10_v2_chrX_+_7697131_7697187	0.0222409	Hoxa4	ENSMUST00000049896.6|Gpkow|ENSMUSG00000031148.8|G patch domain and KOW motifs
mm10_v2_chrX_+_140367494_140367494	0.0111075	Hoxa4	ENSMUST00000141660.1|Frmpd3|ENSMUSG00000042425.11|FERM and PDZ domain containing 3
mm10_v2_chr17_+_39846958_39847059	0.00995984	Hoxa4	ENSMUST00000182010.1|Gm26924|ENSMUSG00000098178.1|predicted gene, 26924
mm10_v2_chr2_-_57113053_57113072	0.00880258	Hoxa4	ENSMUST00000112627.1|Nr4a2|ENSMUSG00000026826.7|nuclear receptor subfamily 4, group A, member 2
mm10_v2_chr8_+_4238815_4238886	0.00446631	Hoxa4	ENSMUST00000003027.7|Map2k7|ENSMUSG00000002948.12|mitogen-activated protein kinase kinase 7 	ENSMUST00000110999.1|Map2k7|ENSMUSG00000002948.12|mitogen-activated protein kinase kinase 7
