mm10_v2_chr2_-_36105271_36105434	6.43407	Pax1_Pax9	ENSMUST00000112960.1|Lhx6|ENSMUSG00000026890.13|LIM homeobox protein 6 	ENSMUST00000112967.5|Lhx6|ENSMUSG00000026890.13|LIM homeobox protein 6 	ENSMUST00000112963.1|Lhx6|ENSMUSG00000026890.13|LIM homeobox protein 6
mm10_v2_chr4_-_143299498_143299564	3.41779	Pax1_Pax9	ENSMUST00000030317.7|Pdpn|ENSMUSG00000028583.8|podoplanin
mm10_v2_chr4_-_143299463_143299482	3.2809	Pax1_Pax9	ENSMUST00000119654.1|Pdpn|ENSMUSG00000028583.8|podoplanin
mm10_v2_chr9_-_22389113_22389206	3.06583	Pax1_Pax9	ENSMUST00000040912.7|Anln|ENSMUSG00000036777.7|anillin, actin binding protein
mm10_v2_chr12_-_90969768_90969790	2.11246	Pax1_Pax9	ENSMUST00000181184.1|4930544I03Rik|ENSMUSG00000097071.1|RIKEN cDNA 4930544I03 gene
mm10_v2_chr4_+_115000156_115000170	1.73242	Pax1_Pax9	ENSMUST00000030490.6|Stil|ENSMUSG00000028718.10|Scl/Tal1 interrupting locus
mm10_v2_chr4_+_11558914_11558979	1.53415	Pax1_Pax9	ENSMUST00000178703.1|Rad54b|ENSMUSG00000078773.5|RAD54 homolog B (S. cerevisiae) 	ENSMUST00000095145.5|Rad54b|ENSMUSG00000078773.5|RAD54 homolog B (S. cerevisiae) 	ENSMUST00000108306.2|Rad54b|ENSMUSG00000078773.5|RAD54 homolog B (S. cerevisiae) 	ENSMUST00000070755.6|Rad54b|ENSMUSG00000078773.5|RAD54 homolog B (S. cerevisiae)
mm10_v2_chr4_+_115000174_115000189	1.4808	Pax1_Pax9	ENSMUST00000129957.1|Stil|ENSMUSG00000028718.10|Scl/Tal1 interrupting locus
mm10_v2_chr5_-_129787175_129787259	1.42444	Pax1_Pax9	ENSMUST00000031399.6|Psph|ENSMUSG00000029446.8|phosphoserine phosphatase
mm10_v2_chr4_-_110286581_110286617	0.985049	Pax1_Pax9	ENSMUST00000138972.1|Elavl4|ENSMUSG00000028546.11|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)
mm10_v2_chr19_-_29047847_29047977	0.832139	Pax1_Pax9	ENSMUST00000025696.4|Ak3|ENSMUSG00000024782.7|adenylate kinase 3
mm10_v2_chr13_-_62607499_62607499	0.832127	Pax1_Pax9	ENSMUST00000091563.4|6720489N17Rik|ENSMUSG00000072066.3|RIKEN cDNA 6720489N17 gene
mm10_v2_chr13_-_62520451_62520544	0.504673	Pax1_Pax9	ENSMUST00000082203.6|Zfp934|ENSMUSG00000074865.4|zinc finger protein 934 	ENSMUST00000101547.4|Zfp934|ENSMUSG00000074865.4|zinc finger protein 934
mm10_v2_chr17_-_27909206_27909264	0.486636	Pax1_Pax9	ENSMUST00000114848.1|Taf11|ENSMUSG00000024218.6|TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor
mm10_v2_chr8_+_94838321_94838429	0.443678	Pax1_Pax9	ENSMUST00000034234.8|Coq9|ENSMUSG00000031782.8|coenzyme Q9 homolog (yeast) 	ENSMUST00000159871.1|Coq9|ENSMUSG00000031782.8|coenzyme Q9 homolog (yeast)
mm10_v2_chr9_+_96196246_96196280	0.441794	Pax1_Pax9	ENSMUST00000165120.2|Tfdp2|ENSMUSG00000032411.9|transcription factor Dp 2 	ENSMUST00000034982.9|Tfdp2|ENSMUSG00000032411.9|transcription factor Dp 2
mm10_v2_chr17_+_27909337_27909409	0.421792	Pax1_Pax9	ENSMUST00000114842.1|Anks1|ENSMUSG00000024219.9|ankyrin repeat and SAM domain containing 1 	ENSMUST00000025058.7|Anks1|ENSMUSG00000024219.9|ankyrin repeat and SAM domain containing 1 	ENSMUST00000088027.5|Anks1|ENSMUSG00000024219.9|ankyrin repeat and SAM domain containing 1
mm10_v2_chrX_+_74313014_74313109	0.417438	Pax1_Pax9	ENSMUST00000114160.1|Fam50a|ENSMUSG00000001962.8|family with sequence similarity 50, member A
mm10_v2_chr18_-_10706688_10706771	0.391048	Pax1_Pax9	ENSMUST00000002549.7|Abhd3|ENSMUSG00000002475.9|abhydrolase domain containing 3 	ENSMUST00000117726.1|Abhd3|ENSMUSG00000002475.9|abhydrolase domain containing 3 	ENSMUST00000117828.1|Abhd3|ENSMUSG00000002475.9|abhydrolase domain containing 3
mm10_v2_chr2_+_84734050_84734107	0.353254	Pax1_Pax9	ENSMUST00000090729.2|Ypel4|ENSMUSG00000034059.7|yippee-like 4 (Drosophila)
mm10_v2_chr5_-_31291026_31291143	0.325164	Pax1_Pax9	ENSMUST00000041565.7|Ift172|ENSMUSG00000038564.7|intraflagellar transport 172
mm10_v2_chr9_-_121839460_121839465	0.301178	Pax1_Pax9	ENSMUST00000135986.2|Ccdc13|ENSMUSG00000079235.4|coiled-coil domain containing 13
mm10_v2_chr12_+_33957645_33957671	0.291674	Pax1_Pax9	ENSMUST00000049089.5|Twist1|ENSMUSG00000035799.5|twist basic helix-loop-helix transcription factor 1
mm10_v2_chr13_-_62777089_62777089	0.281688	Pax1_Pax9	ENSMUST00000167516.2|Gm5141|ENSMUSG00000091183.2|predicted gene 5141
mm10_v2_chr8_-_94838255_94838358	0.169115	Pax1_Pax9	ENSMUST00000161762.1|Ciapin1|ENSMUSG00000031781.7|cytokine induced apoptosis inhibitor 1 	ENSMUST00000162538.1|Ciapin1|ENSMUSG00000031781.7|cytokine induced apoptosis inhibitor 1
mm10_v2_chr18_+_69344503_69344530	0.118669	Pax1_Pax9	ENSMUST00000114985.3|Tcf4|ENSMUSG00000053477.9|transcription factor 4
mm10_v2_chr9_+_21337828_21337859	0.0914272	Pax1_Pax9	ENSMUST00000034697.7|Slc44a2|ENSMUSG00000057193.7|solute carrier family 44, member 2
mm10_v2_chr10_+_77978524_77978673	0.0743872	Pax1_Pax9	ENSMUST00000105397.3|1810043G02Rik|ENSMUSG00000020284.10|RIKEN cDNA 1810043G02 gene 	ENSMUST00000105398.1|1810043G02Rik|ENSMUSG00000020284.10|RIKEN cDNA 1810043G02 gene
mm10_v2_chr7_-_24299310_24299368	0.0590655	Pax1_Pax9	ENSMUST00000145131.1|Zfp61|ENSMUSG00000050605.11|zinc finger protein 61
mm10_v2_chr5_+_112255813_112255874	0.0337175	Pax1_Pax9	ENSMUST00000031286.6|Crybb1|ENSMUSG00000029343.11|crystallin, beta B1 	ENSMUST00000131673.1|Crybb1|ENSMUSG00000029343.11|crystallin, beta B1 	ENSMUST00000112375.1|Crybb1|ENSMUSG00000029343.11|crystallin, beta B1
