mm10_v2_chr12_-_90738438_90738438	3.53435	Pax4	ENSMUST00000082432.3|Dio2|ENSMUSG00000007682.5|deiodinase, iodothyronine, type II
mm10_v2_chr8_-_84773381_84773427	3.15479	Pax4	ENSMUST00000109764.1|Nfix|ENSMUSG00000001911.10|nuclear factor I/X
mm10_v2_chr15_-_88978958_88979007	2.9974	Pax4	ENSMUST00000042594.6|Mlc1|ENSMUSG00000035805.7|megalencephalic leukoencephalopathy with subcortical cysts 1 homolog (human) 	ENSMUST00000109368.1|Mlc1|ENSMUSG00000035805.7|megalencephalic leukoencephalopathy with subcortical cysts 1 homolog (human)
mm10_v2_chr15_-_79164477_79164496	2.58046	Pax4	ENSMUST00000040019.4|Sox10|ENSMUSG00000033006.9|SRY-box containing gene 10
mm10_v2_chrX_+_9199865_9199907	2.52696	Pax4	ENSMUST00000069763.2|Lancl3|ENSMUSG00000047344.9|LanC lantibiotic synthetase component C-like 3 (bacterial)
mm10_v2_chr9_+_32696005_32696121	2.26677	Pax4	ENSMUST00000034534.6|Ets1|ENSMUSG00000032035.9|E26 avian leukemia oncogene 1, 5' domain 	ENSMUST00000050797.7|Ets1|ENSMUSG00000032035.9|E26 avian leukemia oncogene 1, 5' domain 	ENSMUST00000184887.1|Ets1|ENSMUSG00000032035.9|E26 avian leukemia oncogene 1, 5' domain
mm10_v2_chr9_-_58159201_58159239	2.11233	Pax4	ENSMUST00000041477.7|Islr|ENSMUSG00000037206.8|immunoglobulin superfamily containing leucine-rich repeat
mm10_v2_chr13_-_101768154_101768217	1.98691	Pax4	ENSMUST00000055518.6|Pik3r1|ENSMUSG00000041417.9|phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 1 (p85 alpha)
mm10_v2_chr2_+_73271925_73271939	1.97542	Pax4	ENSMUST00000090813.5|Sp9|ENSMUSG00000068859.5|trans-acting transcription factor 9
mm10_v2_chrX_+_142227923_142227951	1.67234	Pax4	ENSMUST00000042329.5|Nxt2|ENSMUSG00000042271.7|nuclear transport factor 2-like export factor 2
mm10_v2_chrX_+_142228177_142228250	1.53996	Pax4	ENSMUST00000112914.1|Nxt2|ENSMUSG00000042271.7|nuclear transport factor 2-like export factor 2
mm10_v2_chr4_+_136357423_136357541	1.38165	Pax4	ENSMUST00000182167.1|Gm17388|ENSMUSG00000097588.2|predicted gene, 17388
mm10_v2_chr2_-_168741898_168741973	1.28426	Pax4	ENSMUST00000109176.1|Atp9a|ENSMUSG00000027546.9|ATPase, class II, type 9A 	ENSMUST00000178504.1|Atp9a|ENSMUSG00000027546.9|ATPase, class II, type 9A
mm10_v2_chr13_-_23430826_23431022	1.23733	Pax4	ENSMUST00000153753.1|C230035I16Rik|ENSMUSG00000085024.1|RIKEN cDNA C230035I16 gene 	ENSMUST00000141543.1|C230035I16Rik|ENSMUSG00000085024.1|RIKEN cDNA C230035I16 gene
mm10_v2_chr4_-_88033328_88033373	1.08289	Pax4	ENSMUST00000078090.5|Mllt3|ENSMUSG00000028496.11|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3
mm10_v2_chr2_-_168741752_168741800	1.07905	Pax4	ENSMUST00000029060.4|Atp9a|ENSMUSG00000027546.9|ATPase, class II, type 9A
mm10_v2_chr12_+_71048338_71048356	1.03681	Pax4	ENSMUST00000135709.1|Arid4a|ENSMUSG00000048118.11|AT rich interactive domain 4A (RBP1-like)
mm10_v2_chr9_-_101198999_101199080	0.942908	Pax4	ENSMUST00000066773.7|Ppp2r3a|ENSMUSG00000043154.9|protein phosphatase 2, regulatory subunit B'', alpha
mm10_v2_chr2_+_158666690_158666740	0.942254	Pax4	ENSMUST00000103116.3|Ppp1r16b|ENSMUSG00000037754.7|protein phosphatase 1, regulatory (inhibitor) subunit 16B
mm10_v2_chr13_+_23738804_23738809	0.917273	Pax4	ENSMUST00000040914.1|Hist1h1c|ENSMUSG00000036181.1|histone cluster 1, H1c
mm10_v2_chr8_-_70700070_70700088	0.884611	Pax4	ENSMUST00000116172.1|Gm11175|ENSMUSG00000080058.1|predicted gene 11175
mm10_v2_chr2_+_158667119_158667130	0.856044	Pax4	ENSMUST00000045503.4|Ppp1r16b|ENSMUSG00000037754.7|protein phosphatase 1, regulatory (inhibitor) subunit 16B
mm10_v2_chr10_-_64090265_64090297	0.849361	Pax4	ENSMUST00000105439.1|Lrrtm3|ENSMUSG00000042846.8|leucine rich repeat transmembrane neuronal 3
mm10_v2_chr15_+_99006056_99006056	0.842776	Pax4	ENSMUST00000079818.3|Gm8973|ENSMUSG00000064081.3|predicted gene 8973
mm10_v2_chr12_-_98577940_98578046	0.79135	Pax4	ENSMUST00000110113.1|Kcnk10|ENSMUSG00000033854.9|potassium channel, subfamily K, member 10
mm10_v2_chr10_-_62792243_62792368	0.79038	Pax4	ENSMUST00000020268.5|Ccar1|ENSMUSG00000020074.6|cell division cycle and apoptosis regulator 1
mm10_v2_chr5_-_103100054_103100088	0.765804	Pax4	ENSMUST00000112848.1|Mapk10|ENSMUSG00000046709.10|mitogen-activated protein kinase 10
mm10_v2_chr13_+_109632760_109632790	0.66145	Pax4	ENSMUST00000135275.1|Pde4d|ENSMUSG00000021699.11|phosphodiesterase 4D, cAMP specific
mm10_v2_chr10_+_107271827_107271850	0.6358	Pax4	ENSMUST00000020057.8|Lin7a|ENSMUSG00000019906.8|lin-7 homolog A (C. elegans) 	ENSMUST00000105280.3|Lin7a|ENSMUSG00000019906.8|lin-7 homolog A (C. elegans)
mm10_v2_chr5_-_116288978_116288999	0.618572	Pax4	ENSMUST00000050178.6|Ccdc60|ENSMUSG00000043913.8|coiled-coil domain containing 60
mm10_v2_chr19_-_32712287_32712336	0.610286	Pax4	ENSMUST00000070210.4|Atad1|ENSMUSG00000013662.5|ATPase family, AAA domain containing 1
mm10_v2_chrX_-_9662950_9663003	0.609631	Pax4	ENSMUST00000033519.2|Dynlt3|ENSMUSG00000031176.2|dynein light chain Tctex-type 3
mm10_v2_chrX_-_8206475_8206547	0.597741	Pax4	ENSMUST00000089403.3|Porcn|ENSMUSG00000031169.7|porcupine homolog (Drosophila) 	ENSMUST00000077595.5|Porcn|ENSMUSG00000031169.7|porcupine homolog (Drosophila) 	ENSMUST00000089402.3|Porcn|ENSMUSG00000031169.7|porcupine homolog (Drosophila) 	ENSMUST00000082320.5|Porcn|ENSMUSG00000031169.7|porcupine homolog (Drosophila)
mm10_v2_chr18_+_58836721_58836764	0.587291	Pax4	ENSMUST00000052907.5|Adamts19|ENSMUSG00000053441.4|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 19
mm10_v2_chr11_+_62574523_62574552	0.574502	Pax4	ENSMUST00000018651.7|Trpv2|ENSMUSG00000018507.10|transient receptor potential cation channel, subfamily V, member 2
mm10_v2_chr9_+_58488568_58488603	0.571195	Pax4	ENSMUST00000085658.4|6030419C18Rik|ENSMUSG00000066607.4|RIKEN cDNA 6030419C18 gene
mm10_v2_chr10_-_64090241_64090262	0.567225	Pax4	ENSMUST00000133588.1|Lrrtm3|ENSMUSG00000042846.8|leucine rich repeat transmembrane neuronal 3
mm10_v2_chrX_+_73192222_73192222	0.560883	Pax4	ENSMUST00000101486.4|Xlr3b|ENSMUSG00000073125.4|X-linked lymphocyte-regulated 3B
mm10_v2_chr9_-_103222063_103222149	0.487283	Pax4	ENSMUST00000170904.1|Trf|ENSMUSG00000032554.9|transferrin
mm10_v2_chr11_+_78499087_78499123	0.484616	Pax4	ENSMUST00000017488.4|Vtn|ENSMUSG00000017344.4|vitronectin
mm10_v2_chr13_-_66851513_66851513	0.479968	Pax4	ENSMUST00000169322.1|Gm17404|ENSMUSG00000095206.1|predicted gene, 17404
mm10_v2_chr18_+_53862087_53862143	0.446225	Pax4	ENSMUST00000069597.6|Csnk1g3|ENSMUSG00000073563.2|casein kinase 1, gamma 3
mm10_v2_chr7_+_7171330_7171373	0.432096	Pax4	ENSMUST00000051435.7|Zfp418|ENSMUSG00000034538.7|zinc finger protein 418
mm10_v2_chrX_-_73097017_73097095	0.419517	Pax4	ENSMUST00000114524.2|Xlr3a|ENSMUSG00000057836.6|X-linked lymphocyte-regulated 3A 	ENSMUST00000074619.5|Xlr3a|ENSMUSG00000057836.6|X-linked lymphocyte-regulated 3A
mm10_v2_chr3_+_20057802_20057857	0.413584	Pax4	ENSMUST00000002502.5|Hltf|ENSMUSG00000002428.6|helicase-like transcription factor
mm10_v2_chr15_-_50889691_50889714	0.404298	Pax4	ENSMUST00000165201.2|Trps1|ENSMUSG00000038679.10|trichorhinophalangeal syndrome I (human) 	ENSMUST00000184458.1|Trps1|ENSMUSG00000038679.10|trichorhinophalangeal syndrome I (human)
mm10_v2_chr2_-_33086366_33086447	0.364548	Pax4	ENSMUST00000049618.2|Garnl3|ENSMUSG00000038860.9|GTPase activating RANGAP domain-like 3
mm10_v2_chr5_+_124552845_124552903	0.359162	Pax4	ENSMUST00000071057.7|Ddx55|ENSMUSG00000029389.11|DEAD (Asp-Glu-Ala-Asp) box polypeptide 55
mm10_v2_chr19_-_10482874_10482938	0.323849	Pax4	ENSMUST00000038842.3|Ppp1r32|ENSMUSG00000035179.3|protein phosphatase 1, regulatory subunit 32
mm10_v2_chr16_+_15637844_15637889	0.319592	Pax4	ENSMUST00000023352.8|Prkdc|ENSMUSG00000022672.8|protein kinase, DNA activated, catalytic polypeptide
mm10_v2_chr14_-_12823031_12823133	0.305849	Pax4	ENSMUST00000067491.6|Cadps|ENSMUSG00000054423.7|Ca2+-dependent secretion activator 	ENSMUST00000177814.1|Cadps|ENSMUSG00000054423.7|Ca2+-dependent secretion activator 	ENSMUST00000112658.1|Cadps|ENSMUSG00000054423.7|Ca2+-dependent secretion activator 	ENSMUST00000112657.2|Cadps|ENSMUSG00000054423.7|Ca2+-dependent secretion activator
mm10_v2_chrM_+_11734_11757	0.304193	Pax4	ENSMUST00000082418.1|mt-Nd5|ENSMUSG00000064367.1|mitochondrially encoded NADH dehydrogenase 5
mm10_v2_chr10_+_119992916_119992958	0.300007	Pax4	ENSMUST00000105261.2|Grip1|ENSMUSG00000034813.10|glutamate receptor interacting protein 1
mm10_v2_chr5_-_121502980_121502980	0.282067	Pax4	ENSMUST00000079368.3|Adam1b|ENSMUSG00000062438.3|a disintegrin and metallopeptidase domain 1b
mm10_v2_chr1_-_88008520_88008556	0.247292	Pax4	ENSMUST00000040783.4|Usp40|ENSMUSG00000005501.8|ubiquitin specific peptidase 40
mm10_v2_chr13_+_38204928_38204962	0.241197	Pax4	ENSMUST00000091641.5|Snrnp48|ENSMUSG00000021431.8|small nuclear ribonucleoprotein 48 (U11/U12) 	ENSMUST00000178564.1|Snrnp48|ENSMUSG00000021431.8|small nuclear ribonucleoprotein 48 (U11/U12)
mm10_v2_chr1_-_74935549_74935613	0.228696	Pax4	ENSMUST00000094844.3|Ccdc108|ENSMUSG00000047021.8|coiled-coil domain containing 108
mm10_v2_chr4_+_136284708_136284775	0.190552	Pax4	ENSMUST00000130223.1|Zfp46|ENSMUSG00000051351.8|zinc finger protein 46
mm10_v2_chr4_+_150087365_150087541	0.179829	Pax4	ENSMUST00000094451.3|Gpr157|ENSMUSG00000047875.6|G protein-coupled receptor 157
mm10_v2_chr13_-_66852017_66852017	0.172241	Pax4	ENSMUST00000059329.6|Gm17449|ENSMUSG00000094740.1|predicted gene, 17449
mm10_v2_chr1_-_156034800_156034817	0.14646	Pax4	ENSMUST00000169241.1|Tor1aip1|ENSMUSG00000026466.10|torsin A interacting protein 1
mm10_v2_chrX_+_143518576_143518599	0.136149	Pax4	ENSMUST00000033640.7|Pak3|ENSMUSG00000031284.10|p21 protein (Cdc42/Rac)-activated kinase 3
mm10_v2_chr8_+_8689666_8689666	0.117138	Pax4	ENSMUST00000179702.1|B930078G14Rik|ENSMUSG00000094143.1|RIKEN cDNA B930078G14 gene
mm10_v2_chr17_+_35059035_35059130	0.101173	Pax4	ENSMUST00000007255.6|Ddah2|ENSMUSG00000007039.6|dimethylarginine dimethylaminohydrolase 2 	ENSMUST00000174493.1|Ddah2|ENSMUSG00000007039.6|dimethylarginine dimethylaminohydrolase 2
mm10_v2_chrM_+_3906_3926	0.0933364	Pax4	ENSMUST00000082396.1|mt-Nd2|ENSMUSG00000064345.1|mitochondrially encoded NADH dehydrogenase 2
mm10_v2_chr2_+_22895583_22895629	0.0855561	Pax4	ENSMUST00000152170.1|Pdss1|ENSMUSG00000026784.8|prenyl (solanesyl) diphosphate synthase, subunit 1
mm10_v2_chr12_+_33314277_33314328	0.0739165	Pax4	ENSMUST00000133549.1|Atxn7l1|ENSMUSG00000020564.10|ataxin 7-like 1
mm10_v2_chr2_+_22895482_22895522	0.0644266	Pax4	ENSMUST00000053729.7|Pdss1|ENSMUSG00000026784.8|prenyl (solanesyl) diphosphate synthase, subunit 1
mm10_v2_chr4_+_147132038_147132038	0.0615133	Pax4	ENSMUST00000084149.3|Gm13139|ENSMUSG00000067916.3|predicted gene 13139
mm10_v2_chr10_+_90071095_90071117	0.061098	Pax4	ENSMUST00000183109.1|Anks1b|ENSMUSG00000058589.8|ankyrin repeat and sterile alpha motif domain containing 1B
mm10_v2_chr13_+_21717626_21717631	0.0554742	Pax4	ENSMUST00000091754.2|Hist1h3h|ENSMUSG00000069312.2|histone cluster 1, H3h
mm10_v2_chr12_-_80112998_80113019	0.0542881	Pax4	ENSMUST00000165114.1|Zfp36l1|ENSMUSG00000021127.6|zinc finger protein 36, C3H type-like 1 	ENSMUST00000021552.1|Zfp36l1|ENSMUSG00000021127.6|zinc finger protein 36, C3H type-like 1
mm10_v2_chr8_-_22476809_22476879	0.0541991	Pax4	ENSMUST00000163774.1|Smim19|ENSMUSG00000031534.8|small integral membrane protein 19 	ENSMUST00000033935.8|Smim19|ENSMUSG00000031534.8|small integral membrane protein 19
mm10_v2_chr15_-_50890041_50890064	0.0521387	Pax4	ENSMUST00000077935.5|Trps1|ENSMUSG00000038679.10|trichorhinophalangeal syndrome I (human)
mm10_v2_chr4_+_136284658_136284686	0.0287066	Pax4	ENSMUST00000144217.1|Zfp46|ENSMUSG00000051351.8|zinc finger protein 46
mm10_v2_chr6_+_136518820_136518851	0.0245543	Pax4	ENSMUST00000032335.6|Atf7ip|ENSMUSG00000030213.6|activating transcription factor 7 interacting protein
mm10_v2_chr13_+_75089826_75089886	0.0232917	Pax4	ENSMUST00000022075.4|Pcsk1|ENSMUSG00000021587.4|proprotein convertase subtilisin/kexin type 1
mm10_v2_chr15_+_80977765_80977845	0.00585557	Pax4	ENSMUST00000139517.1|Sgsm3|ENSMUSG00000042303.10|small G protein signaling modulator 3 	ENSMUST00000042506.8|Sgsm3|ENSMUSG00000042303.10|small G protein signaling modulator 3 	ENSMUST00000137255.1|Sgsm3|ENSMUSG00000042303.10|small G protein signaling modulator 3
