mm10_v2_chr6_-_23248264_23248390	7.15788	Six4	ENSMUST00000031709.5|Fezf1|ENSMUSG00000029697.5|Fez family zinc finger 1
mm10_v2_chr7_-_137314394_137314445	5.18805	Six4	ENSMUST00000168203.1|Ebf3|ENSMUSG00000010476.7|early B cell factor 3 	ENSMUST00000106118.2|Ebf3|ENSMUSG00000010476.7|early B cell factor 3 	ENSMUST00000169486.2|Ebf3|ENSMUSG00000010476.7|early B cell factor 3 	ENSMUST00000033378.5|Ebf3|ENSMUSG00000010476.7|early B cell factor 3
mm10_v2_chr7_-_143460989_143461050	2.91867	Six4	ENSMUST00000167912.1|Cdkn1c|ENSMUSG00000037664.6|cyclin-dependent kinase inhibitor 1C (P57) 	ENSMUST00000037287.6|Cdkn1c|ENSMUSG00000037664.6|cyclin-dependent kinase inhibitor 1C (P57)
mm10_v2_chr4_-_134018829_134018841	2.4406	Six4	ENSMUST00000051674.2|Lin28a|ENSMUSG00000050966.3|lin-28 homolog A (C. elegans)
mm10_v2_chr7_+_29307924_29308057	2.24962	Six4	ENSMUST00000108230.1|Dpf1|ENSMUSG00000030584.7|D4, zinc and double PHD fingers family 1 	ENSMUST00000065181.5|Dpf1|ENSMUSG00000030584.7|D4, zinc and double PHD fingers family 1
mm10_v2_chr7_+_29309429_29309513	2.18392	Six4	ENSMUST00000137848.1|Dpf1|ENSMUSG00000030584.7|D4, zinc and double PHD fingers family 1
mm10_v2_chr6_+_7555053_7555096	1.68435	Six4	ENSMUST00000090679.2|Tac1|ENSMUSG00000061762.6|tachykinin 1 	ENSMUST00000184986.1|Tac1|ENSMUSG00000061762.6|tachykinin 1
mm10_v2_chr11_+_67078293_67078307	1.67254	Six4	ENSMUST00000108689.1|Myh3|ENSMUSG00000020908.8|myosin, heavy polypeptide 3, skeletal muscle, embryonic 	ENSMUST00000165221.1|Myh3|ENSMUSG00000020908.8|myosin, heavy polypeptide 3, skeletal muscle, embryonic 	ENSMUST00000007301.7|Myh3|ENSMUSG00000020908.8|myosin, heavy polypeptide 3, skeletal muscle, embryonic
mm10_v2_chr8_-_84237042_84237061	1.61411	Six4	ENSMUST00000039480.5|Zswim4|ENSMUSG00000035671.5|zinc finger SWIM-type containing 4
mm10_v2_chr1_-_78968079_78968079	1.57409	Six4	ENSMUST00000049117.5|Gm5830|ENSMUSG00000072978.2|predicted pseudogene 5830
mm10_v2_chr19_+_8764934_8765034	1.47212	Six4	ENSMUST00000184663.1|Nxf1|ENSMUSG00000010097.7|nuclear RNA export factor 1
mm10_v2_chr17_+_35049966_35049966	1.34287	Six4	ENSMUST00000007257.9|Clic1|ENSMUSG00000007041.9|chloride intracellular channel 1
mm10_v2_chr13_-_9878998_9878998	1.3382	Six4	ENSMUST00000063093.9|Chrm3|ENSMUSG00000046159.9|cholinergic receptor, muscarinic 3, cardiac
mm10_v2_chr13_+_54071815_54071859	1.30961	Six4	ENSMUST00000021930.8|Sfxn1|ENSMUSG00000021474.8|sideroflexin 1
mm10_v2_chr2_-_103797617_103797662	1.30016	Six4	ENSMUST00000028607.6|Caprin1|ENSMUSG00000027184.8|cell cycle associated protein 1
mm10_v2_chr7_-_132317198_132317228	1.16355	Six4	ENSMUST00000080215.5|Chst15|ENSMUSG00000030930.7|carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15
mm10_v2_chr6_+_50110186_50110383	1.12509	Six4	ENSMUST00000166318.1|Mpp6|ENSMUSG00000038388.8|membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6) 	ENSMUST00000036236.8|Mpp6|ENSMUSG00000038388.8|membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6) 	ENSMUST00000036225.8|Mpp6|ENSMUSG00000038388.8|membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)
mm10_v2_chr7_+_38183787_38183869	1.09015	Six4	ENSMUST00000067854.8|1600014C10Rik|ENSMUSG00000054676.9|RIKEN cDNA 1600014C10 gene 	ENSMUST00000177983.1|1600014C10Rik|ENSMUSG00000054676.9|RIKEN cDNA 1600014C10 gene
mm10_v2_chr5_-_145191511_145191548	0.972029	Six4	ENSMUST00000161845.1|Atp5j2|ENSMUSG00000038690.9|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F2
mm10_v2_chr8_-_85067982_85067982	0.95769	Six4	ENSMUST00000177563.1|Gm5741|ENSMUSG00000095845.1|predicted gene 5741
mm10_v2_chr13_+_73626886_73627001	0.952804	Six4	ENSMUST00000022104.7|Tert|ENSMUSG00000021611.8|telomerase reverse transcriptase
mm10_v2_chr8_+_62951361_62951498	0.909562	Six4	ENSMUST00000119068.1|Spock3|ENSMUSG00000054162.9|sparc/osteonectin, cwcv and kazal-like domains proteoglycan 3
mm10_v2_chr14_-_89898466_89898466	0.906841	Six4	ENSMUST00000081204.4|Gm10110|ENSMUSG00000062093.4|predicted gene 10110
mm10_v2_chr13_+_51645232_51645276	0.902048	Six4	ENSMUST00000075853.5|Cks2|ENSMUSG00000062248.5|CDC28 protein kinase regulatory subunit 2
mm10_v2_chr12_-_57546121_57546141	0.858565	Six4	ENSMUST00000044380.6|Foxa1|ENSMUSG00000035451.6|forkhead box A1
mm10_v2_chr2_+_119351222_119351233	0.735189	Six4	ENSMUST00000028780.3|Chac1|ENSMUSG00000027313.3|ChaC, cation transport regulator 1
mm10_v2_chr6_+_149130170_149130170	0.716042	Six4	ENSMUST00000087348.3|Gm10203|ENSMUSG00000067292.3|predicted gene 10203
mm10_v2_chr3_-_129831374_129831406	0.677022	Six4	ENSMUST00000029643.8|Gar1|ENSMUSG00000028010.10|GAR1 ribonucleoprotein homolog (yeast)
mm10_v2_chr1_-_180813534_180813583	0.67614	Six4	ENSMUST00000159789.1|H3f3a|ENSMUSG00000060743.6|H3 histone, family 3A 	ENSMUST00000081026.4|H3f3a|ENSMUSG00000060743.6|H3 histone, family 3A
mm10_v2_chr1_+_37890477_37890542	0.65596	Six4	ENSMUST00000027256.5|Mrpl30|ENSMUSG00000026087.5|mitochondrial ribosomal protein L30
mm10_v2_chr2_-_91444622_91444726	0.651983	Six4	ENSMUST00000064652.7|1110051M20Rik|ENSMUSG00000040591.12|RIKEN cDNA 1110051M20 gene 	ENSMUST00000102594.4|1110051M20Rik|ENSMUSG00000040591.12|RIKEN cDNA 1110051M20 gene 	ENSMUST00000094835.2|1110051M20Rik|ENSMUSG00000040591.12|RIKEN cDNA 1110051M20 gene
mm10_v2_chr1_-_37890333_37890416	0.637073	Six4	ENSMUST00000139725.1|Mitd1|ENSMUSG00000026088.9|MIT, microtubule interacting and transport, domain containing 1 	ENSMUST00000027257.8|Mitd1|ENSMUSG00000026088.9|MIT, microtubule interacting and transport, domain containing 1
mm10_v2_chr3_+_40950631_40950657	0.576421	Six4	ENSMUST00000048490.6|Larp1b|ENSMUSG00000037814.9|La ribonucleoprotein domain family, member 1B
mm10_v2_chr8_+_94214567_94214608	0.558783	Six4	ENSMUST00000079961.6|Nup93|ENSMUSG00000032939.7|nucleoporin 93
mm10_v2_chr2_+_131133497_131133497	0.541798	Six4	ENSMUST00000110225.1|Gm11037|ENSMUSG00000079039.1|predicted gene 11037
mm10_v2_chrX_-_139714481_139714507	0.540535	Six4	ENSMUST00000183728.1|Gm15013|ENSMUSG00000098559.1|predicted gene 15013
mm10_v2_chr3_+_145938004_145938063	0.538301	Six4	ENSMUST00000039571.7|2410004B18Rik|ENSMUSG00000036873.7|RIKEN cDNA 2410004B18 gene
mm10_v2_chr6_+_134929089_134929103	0.514336	Six4	ENSMUST00000183867.1|RP23-45G16.5|ENSMUSG00000098318.1|RP23-45G16.5	ENSMUST00000184991.1|RP23-45G16.5|ENSMUSG00000098318.1|RP23-45G16.5	ENSMUST00000183905.1|RP23-45G16.5|ENSMUSG00000098318.1|RP23-45G16.5
mm10_v2_chr6_+_134929118_134929164	0.502066	Six4	ENSMUST00000185152.1|RP23-45G16.5|ENSMUSG00000098318.1|RP23-45G16.5	ENSMUST00000184504.1|RP23-45G16.5|ENSMUSG00000098318.1|RP23-45G16.5
mm10_v2_chr17_+_24896488_24896530	0.470971	Six4	ENSMUST00000024978.6|Nme3|ENSMUSG00000073435.4|NME/NM23 nucleoside diphosphate kinase 3
mm10_v2_chr10_-_80918212_80918256	0.466054	Six4	ENSMUST00000057623.7|Lmnb2|ENSMUSG00000062075.7|lamin B2 	ENSMUST00000179022.1|Lmnb2|ENSMUSG00000062075.7|lamin B2
mm10_v2_chr8_+_95703037_95703063	0.452645	Six4	ENSMUST00000073139.7|Ndrg4|ENSMUSG00000036564.10|N-myc downstream regulated gene 4 	ENSMUST00000080666.7|Ndrg4|ENSMUSG00000036564.10|N-myc downstream regulated gene 4
mm10_v2_chr6_+_124931378_124931425	0.429577	Six4	ENSMUST00000032214.7|Mlf2|ENSMUSG00000030120.8|myeloid leukemia factor 2 	ENSMUST00000180095.1|Mlf2|ENSMUSG00000030120.8|myeloid leukemia factor 2
mm10_v2_chr1_-_180813591_180813632	0.327194	Six4	ENSMUST00000162118.1|H3f3a|ENSMUSG00000060743.6|H3 histone, family 3A 	ENSMUST00000159685.1|H3f3a|ENSMUSG00000060743.6|H3 histone, family 3A 	ENSMUST00000161308.1|H3f3a|ENSMUSG00000060743.6|H3 histone, family 3A
mm10_v2_chr11_-_45955465_45955494	0.319242	Six4	ENSMUST00000011398.6|Thg1l|ENSMUSG00000011254.10|tRNA-histidine guanylyltransferase 1-like (S. cerevisiae)
mm10_v2_chr19_-_38224096_38224183	0.310689	Six4	ENSMUST00000067167.5|Fra10ac1|ENSMUSG00000054237.5|FRA10AC1 homolog (human)
mm10_v2_chr15_-_79834323_79834334	0.30259	Six4	ENSMUST00000177316.2|Nptxr|ENSMUSG00000022421.12|neuronal pentraxin receptor 	ENSMUST00000175858.2|Nptxr|ENSMUSG00000022421.12|neuronal pentraxin receptor
mm10_v2_chr2_-_10048580_10048621	0.297261	Six4	ENSMUST00000026888.4|Taf3|ENSMUSG00000025782.6|TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated factor
mm10_v2_chr17_-_48409729_48409906	0.294812	Six4	ENSMUST00000160319.1|Nfya|ENSMUSG00000023994.7|nuclear transcription factor-Y alpha 	ENSMUST00000159535.1|Nfya|ENSMUSG00000023994.7|nuclear transcription factor-Y alpha 	ENSMUST00000078800.6|Nfya|ENSMUSG00000023994.7|nuclear transcription factor-Y alpha 	ENSMUST00000046719.7|Nfya|ENSMUSG00000023994.7|nuclear transcription factor-Y alpha 	ENSMUST00000162460.1|Nfya|ENSMUSG00000023994.7|nuclear transcription factor-Y alpha
mm10_v2_chr1_-_74284636_74284738	0.27715	Six4	ENSMUST00000178235.1|Aamp|ENSMUSG00000006299.7|angio-associated migratory protein 	ENSMUST00000006462.7|Aamp|ENSMUSG00000006299.7|angio-associated migratory protein
mm10_v2_chr12_-_21417356_21417436	0.276738	Six4	ENSMUST00000103002.1|Ywhaq|ENSMUSG00000076432.6|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide
mm10_v2_chr19_-_6980420_6980481	0.25241	Six4	ENSMUST00000070878.8|Fkbp2|ENSMUSG00000056629.9|FK506 binding protein 2 	ENSMUST00000177752.1|Fkbp2|ENSMUSG00000056629.9|FK506 binding protein 2
mm10_v2_chr12_+_75818294_75818356	0.246363	Six4	ENSMUST00000143031.1|Syne2|ENSMUSG00000063450.8|spectrin repeat containing, nuclear envelope 2 	ENSMUST00000044217.9|Syne2|ENSMUSG00000063450.8|spectrin repeat containing, nuclear envelope 2 	ENSMUST00000150317.1|Syne2|ENSMUSG00000063450.8|spectrin repeat containing, nuclear envelope 2
mm10_v2_chrX_-_150440887_150440937	0.207843	Six4	ENSMUST00000163233.1|Tmem29|ENSMUSG00000090483.1|transmembrane protein 29
mm10_v2_chr9_-_57158288_57158338	0.184387	Six4	ENSMUST00000065358.7|Commd4|ENSMUSG00000032299.9|COMM domain containing 4
mm10_v2_chr15_-_79834224_79834245	0.174965	Six4	ENSMUST00000109623.1|Cbx6|ENSMUSG00000089715.5|chromobox 6 	ENSMUST00000023060.6|Npcd|ENSMUSG00000089837.3|neuronal pentraxin chromo domain 	ENSMUST00000089299.5|Npcd|ENSMUSG00000089837.3|neuronal pentraxin chromo domain 	ENSMUST00000109625.1|Cbx6|ENSMUSG00000089715.5|chromobox 6
mm10_v2_chr11_-_45955183_45955193	0.166155	Six4	ENSMUST00000109254.1|Thg1l|ENSMUSG00000011254.10|tRNA-histidine guanylyltransferase 1-like (S. cerevisiae)
mm10_v2_chr1_+_74284930_74285072	0.13393	Six4	ENSMUST00000113805.1|Pnkd|ENSMUSG00000026179.8|paroxysmal nonkinesiogenic dyskinesia 	ENSMUST00000027370.6|Pnkd|ENSMUSG00000026179.8|paroxysmal nonkinesiogenic dyskinesia 	ENSMUST00000087226.4|Pnkd|ENSMUSG00000026179.8|paroxysmal nonkinesiogenic dyskinesia
mm10_v2_chr17_+_48409980_48410104	0.0961349	Six4	ENSMUST00000167180.1|Oard1|ENSMUSG00000040771.7|O-acyl-ADP-ribose deacylase 1 	ENSMUST00000046651.6|Oard1|ENSMUSG00000040771.7|O-acyl-ADP-ribose deacylase 1
mm10_v2_chr9_-_70503718_70503805	0.0900723	Six4	ENSMUST00000034739.5|Rnf111|ENSMUSG00000032217.6|ring finger 111
mm10_v2_chr11_+_85312164_85312180	0.0782576	Six4	ENSMUST00000127717.1|Ppm1d|ENSMUSG00000020525.11|protein phosphatase 1D magnesium-dependent, delta isoform
mm10_v2_chr18_+_60212080_60212122	0.0289854	Six4	ENSMUST00000031549.5|Gm4951|ENSMUSG00000073555.1|predicted gene 4951
mm10_v2_chr19_+_6400523_6400583	0.013681	Six4	ENSMUST00000146831.1|Rasgrp2|ENSMUSG00000032946.10|RAS, guanyl releasing protein 2 	ENSMUST00000035716.8|Rasgrp2|ENSMUSG00000032946.10|RAS, guanyl releasing protein 2 	ENSMUST00000138555.1|Rasgrp2|ENSMUSG00000032946.10|RAS, guanyl releasing protein 2 	ENSMUST00000167240.1|Rasgrp2|ENSMUSG00000032946.10|RAS, guanyl releasing protein 2
mm10_v2_chr19_+_6400611_6400623	0.00632644	Six4	ENSMUST00000113467.1|Rasgrp2|ENSMUSG00000032946.10|RAS, guanyl releasing protein 2
