mm10_v2_chr4_-_82505749_82505802	7.33976	Emx1_Emx2	ENSMUST00000107245.2|Nfib|ENSMUSG00000008575.11|nuclear factor I/B 	ENSMUST00000107246.1|Nfib|ENSMUSG00000008575.11|nuclear factor I/B
mm10_v2_chr4_-_82505274_82505358	6.78784	Emx1_Emx2	ENSMUST00000050872.8|Nfib|ENSMUSG00000008575.11|nuclear factor I/B 	ENSMUST00000064770.2|Nfib|ENSMUSG00000008575.11|nuclear factor I/B
mm10_v2_chr4_-_82505707_82505739	6.09029	Emx1_Emx2	ENSMUST00000107248.1|Nfib|ENSMUSG00000008575.11|nuclear factor I/B 	ENSMUST00000107247.1|Nfib|ENSMUSG00000008575.11|nuclear factor I/B
mm10_v2_chr4_+_118961578_118961612	3.66795	Emx1_Emx2	ENSMUST00000058651.4|Lao1|ENSMUSG00000024903.10|L-amino acid oxidase 1
mm10_v2_chr1_-_158356258_158356313	3.48396	Emx1_Emx2	ENSMUST00000004133.8|Brinp2|ENSMUSG00000004031.8|bone morphogenic protein/retinoic acid inducible neural-specific 2
mm10_v2_chr17_-_36032682_36032855	2.8018	Emx1_Emx2	ENSMUST00000102678.4|H2-T23|ENSMUSG00000067212.8|histocompatibility 2, T region locus 23
mm10_v2_chr11_-_42000284_42000356	2.3708	Emx1_Emx2	ENSMUST00000109292.2|Gabrg2|ENSMUSG00000020436.11|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2 	ENSMUST00000109290.1|Gabrg2|ENSMUSG00000020436.11|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2
mm10_v2_chr10_+_90071095_90071117	2.35981	Emx1_Emx2	ENSMUST00000183109.1|Anks1b|ENSMUSG00000058589.8|ankyrin repeat and sterile alpha motif domain containing 1B
mm10_v2_chr9_-_20728219_20728219	2.3093	Emx1_Emx2	ENSMUST00000034692.7|Olfm2|ENSMUSG00000032172.7|olfactomedin 2
mm10_v2_chr16_-_63864114_63864182	2.24192	Emx1_Emx2	ENSMUST00000064405.6|Epha3|ENSMUSG00000052504.6|Eph receptor A3
mm10_v2_chr10_+_81257277_81257309	2.16745	Emx1_Emx2	ENSMUST00000117488.1|Matk|ENSMUSG00000004933.11|megakaryocyte-associated tyrosine kinase 	ENSMUST00000105328.3|Matk|ENSMUSG00000004933.11|megakaryocyte-associated tyrosine kinase 	ENSMUST00000121205.1|Matk|ENSMUSG00000004933.11|megakaryocyte-associated tyrosine kinase
mm10_v2_chr16_-_97170707_97170759	2.12817	Emx1_Emx2	ENSMUST00000056102.7|Dscam|ENSMUSG00000050272.9|Down syndrome cell adhesion molecule
mm10_v2_chr3_+_127633134_127633140	2.0469	Emx1_Emx2	ENSMUST00000029587.7|Neurog2|ENSMUSG00000027967.7|neurogenin 2
mm10_v2_chr2_-_156392829_156392993	1.96585	Emx1_Emx2	ENSMUST00000088578.2|2900097C17Rik|ENSMUSG00000067833.2|RIKEN cDNA 2900097C17 gene
mm10_v2_chr7_-_103827922_103828096	1.86179	Emx1_Emx2	ENSMUST00000023934.6|Hbb-bs|ENSMUSG00000052305.5|hemoglobin, beta adult s chain 	ENSMUST00000153218.1|Hbb-bs|ENSMUSG00000052305.5|hemoglobin, beta adult s chain
mm10_v2_chr16_+_11406618_11406675	1.69601	Emx1_Emx2	ENSMUST00000122168.1|Snx29|ENSMUSG00000071669.8|sorting nexin 29
mm10_v2_chr1_+_32172711_32172806	1.57979	Emx1_Emx2	ENSMUST00000027226.5|Khdrbs2|ENSMUSG00000026058.5|KH domain containing, RNA binding, signal transduction associated 2
mm10_v2_chr7_+_126781483_126781483	1.53986	Emx1_Emx2	ENSMUST00000172352.1|Tbx6|ENSMUSG00000030699.10|T-box 6 	ENSMUST00000094037.4|Tbx6|ENSMUSG00000030699.10|T-box 6
mm10_v2_chr2_-_157566319_157566361	1.47509	Emx1_Emx2	ENSMUST00000109528.2|Blcap|ENSMUSG00000067787.4|bladder cancer associated protein homolog (human) 	ENSMUST00000088494.2|Blcap|ENSMUSG00000067787.4|bladder cancer associated protein homolog (human)
mm10_v2_chr8_-_21906412_21906437	1.42953	Emx1_Emx2	ENSMUST00000051965.4|Defb11|ENSMUSG00000045337.4|defensin beta 11
mm10_v2_chr2_-_160619971_160619971	1.42212	Emx1_Emx2	ENSMUST00000109473.1|Gm14221|ENSMUSG00000078956.2|predicted gene 14221
mm10_v2_chr5_-_118244861_118245116	1.36522	Emx1_Emx2	ENSMUST00000117177.1|Rnft2|ENSMUSG00000032850.10|ring finger protein, transmembrane 2 	ENSMUST00000133372.1|Rnft2|ENSMUSG00000032850.10|ring finger protein, transmembrane 2 	ENSMUST00000154786.1|Rnft2|ENSMUSG00000032850.10|ring finger protein, transmembrane 2 	ENSMUST00000121369.1|Rnft2|ENSMUSG00000032850.10|ring finger protein, transmembrane 2
mm10_v2_chr8_-_125898291_125898322	1.20752	Emx1_Emx2	ENSMUST00000047239.6|Pcnxl2|ENSMUSG00000060212.7|pecanex-like 2 (Drosophila)
mm10_v2_chr15_+_99006056_99006056	1.13387	Emx1_Emx2	ENSMUST00000079818.3|Gm8973|ENSMUSG00000064081.3|predicted gene 8973
mm10_v2_chr6_-_57535422_57535447	1.11369	Emx1_Emx2	ENSMUST00000042766.3|Ppm1k|ENSMUSG00000037826.3|protein phosphatase 1K (PP2C domain containing)
mm10_v2_chr17_-_32822200_32822200	1.10491	Emx1_Emx2	ENSMUST00000179695.1|Zfp799|ENSMUSG00000095253.1|zinc finger protein 799
mm10_v2_chr8_+_69300776_69300776	1.08685	Emx1_Emx2	ENSMUST00000078257.6|D130040H23Rik|ENSMUSG00000079038.2|RIKEN cDNA D130040H23 gene
mm10_v2_chr10_+_69787431_69787458	1.07619	Emx1_Emx2	ENSMUST00000183240.1|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial
mm10_v2_chr15_-_33687840_33687883	1.01375	Emx1_Emx2	ENSMUST00000042021.3|Tspyl5|ENSMUSG00000038984.3|testis-specific protein, Y-encoded-like 5
mm10_v2_chr12_-_90969768_90969790	0.971141	Emx1_Emx2	ENSMUST00000181184.1|4930544I03Rik|ENSMUSG00000097071.1|RIKEN cDNA 4930544I03 gene
mm10_v2_chr10_+_81183000_81183048	0.955323	Emx1_Emx2	ENSMUST00000178422.1|Dapk3|ENSMUSG00000034974.6|death-associated protein kinase 3
mm10_v2_chr13_+_16014457_16014475	0.879465	Emx1_Emx2	ENSMUST00000164993.1|Inhba|ENSMUSG00000041324.7|inhibin beta-A
mm10_v2_chr4_+_126609818_126609896	0.860619	Emx1_Emx2	ENSMUST00000097886.3|5730409E04Rik|ENSMUSG00000073755.4|RIKEN cDNA 5730409E04Rik gene 	ENSMUST00000164362.1|5730409E04Rik|ENSMUSG00000073755.4|RIKEN cDNA 5730409E04Rik gene
mm10_v2_chr10_+_79996479_79996505	0.839255	Emx1_Emx2	ENSMUST00000132517.1|Abca7|ENSMUSG00000035722.9|ATP-binding cassette, sub-family A (ABC1), member 7
mm10_v2_chr9_-_15301555_15301607	0.820805	Emx1_Emx2	ENSMUST00000034414.8|4931406C07Rik|ENSMUSG00000031938.8|RIKEN cDNA 4931406C07 gene
mm10_v2_chr8_+_45507768_45507818	0.801187	Emx1_Emx2	ENSMUST00000067065.7|Sorbs2|ENSMUSG00000031626.10|sorbin and SH3 domain containing 2 	ENSMUST00000098788.3|Sorbs2|ENSMUSG00000031626.10|sorbin and SH3 domain containing 2 	ENSMUST00000067107.7|Sorbs2|ENSMUSG00000031626.10|sorbin and SH3 domain containing 2 	ENSMUST00000171337.2|Sorbs2|ENSMUSG00000031626.10|sorbin and SH3 domain containing 2 	ENSMUST00000138049.1|Sorbs2|ENSMUSG00000031626.10|sorbin and SH3 domain containing 2 	ENSMUST00000141039.1|Sorbs2|ENSMUSG00000031626.10|sorbin and SH3 domain containing 2
mm10_v2_chr1_+_93685574_93685694	0.782892	Emx1_Emx2	ENSMUST00000027499.6|Bok|ENSMUSG00000026278.8|BCL2-related ovarian killer protein
mm10_v2_chr7_+_43672003_43672040	0.745707	Emx1_Emx2	ENSMUST00000038332.8|Ctu1|ENSMUSG00000038888.8|cytosolic thiouridylase subunit 1 homolog (S. pombe)
mm10_v2_chr15_-_102510681_102510705	0.732864	Emx1_Emx2	ENSMUST00000171565.1|Map3k12|ENSMUSG00000023050.2|mitogen-activated protein kinase kinase kinase 12
mm10_v2_chr10_-_49783259_49783582	0.717596	Emx1_Emx2	ENSMUST00000105484.3|Grik2|ENSMUSG00000056073.8|glutamate receptor, ionotropic, kainate 2 (beta 2) 	ENSMUST00000105486.1|Grik2|ENSMUSG00000056073.8|glutamate receptor, ionotropic, kainate 2 (beta 2) 	ENSMUST00000079751.2|Grik2|ENSMUSG00000056073.8|glutamate receptor, ionotropic, kainate 2 (beta 2) 	ENSMUST00000105485.1|Grik2|ENSMUSG00000056073.8|glutamate receptor, ionotropic, kainate 2 (beta 2)
mm10_v2_chr4_+_110397661_110397708	0.712087	Emx1_Emx2	ENSMUST00000106589.2|Agbl4|ENSMUSG00000061298.8|ATP/GTP binding protein-like 4 	ENSMUST00000106587.2|Agbl4|ENSMUSG00000061298.8|ATP/GTP binding protein-like 4 	ENSMUST00000106591.1|Agbl4|ENSMUSG00000061298.8|ATP/GTP binding protein-like 4 	ENSMUST00000106592.1|Agbl4|ENSMUSG00000061298.8|ATP/GTP binding protein-like 4
mm10_v2_chr14_+_55560010_55560037	0.709965	Emx1_Emx2	ENSMUST00000147981.1|Dcaf11|ENSMUSG00000022214.8|DDB1 and CUL4 associated factor 11 	ENSMUST00000133256.1|Dcaf11|ENSMUSG00000022214.8|DDB1 and CUL4 associated factor 11
mm10_v2_chr12_-_98577940_98578046	0.699211	Emx1_Emx2	ENSMUST00000110113.1|Kcnk10|ENSMUSG00000033854.9|potassium channel, subfamily K, member 10
mm10_v2_chr16_-_26371828_26371846	0.694743	Emx1_Emx2	ENSMUST00000023154.2|Cldn1|ENSMUSG00000022512.2|claudin 1
mm10_v2_chr3_+_146852359_146852438	0.680325	Emx1_Emx2	ENSMUST00000038090.5|Ttll7|ENSMUSG00000036745.9|tubulin tyrosine ligase-like family, member 7 	ENSMUST00000170055.1|Ttll7|ENSMUSG00000036745.9|tubulin tyrosine ligase-like family, member 7
mm10_v2_chr8_+_72219726_72219785	0.673243	Emx1_Emx2	ENSMUST00000003123.8|Fam32a|ENSMUSG00000003039.8|family with sequence similarity 32, member A
mm10_v2_chr3_+_32436376_32436376	0.656344	Emx1_Emx2	ENSMUST00000108242.1|Pik3ca|ENSMUSG00000027665.7|phosphatidylinositol 3-kinase, catalytic, alpha polypeptide
mm10_v2_chr1_-_40085823_40085862	0.656107	Emx1_Emx2	ENSMUST00000181756.1|Gm16894|ENSMUSG00000097899.1|predicted gene, 16894
mm10_v2_chr9_+_34904913_34904913	0.650311	Emx1_Emx2	ENSMUST00000045091.6|Kirrel3|ENSMUSG00000032036.9|kin of IRRE like 3 (Drosophila)
mm10_v2_chr11_+_121237216_121237289	0.649215	Emx1_Emx2	ENSMUST00000103015.3|Narf|ENSMUSG00000000056.7|nuclear prelamin A recognition factor
mm10_v2_chr12_-_84617326_84617466	0.647997	Emx1_Emx2	ENSMUST00000021666.4|Abcd4|ENSMUSG00000021240.5|ATP-binding cassette, sub-family D (ALD), member 4
mm10_v2_chr7_-_97738222_97738317	0.64446	Emx1_Emx2	ENSMUST00000084986.6|Aqp11|ENSMUSG00000042797.8|aquaporin 11
mm10_v2_chr1_+_163779575_163779592	0.643591	Emx1_Emx2	ENSMUST00000027877.6|Kifap3|ENSMUSG00000026585.7|kinesin-associated protein 3 	ENSMUST00000077642.5|Kifap3|ENSMUSG00000026585.7|kinesin-associated protein 3
mm10_v2_chr6_+_129533183_129533205	0.621659	Emx1_Emx2	ENSMUST00000032264.6|Gabarapl1|ENSMUSG00000030161.6|gamma-aminobutyric acid (GABA) A receptor-associated protein-like 1
mm10_v2_chr6_+_79818031_79818031	0.620525	Emx1_Emx2	ENSMUST00000179797.1|Gm20594|ENSMUSG00000096887.1|predicted gene, 20594
mm10_v2_chr13_-_97747399_97747414	0.619436	Emx1_Emx2	ENSMUST00000144993.1|5330416C01Rik|ENSMUSG00000054944.7|RIKEN cDNA 5330416C01 gene
mm10_v2_chr13_-_23934156_23934225	0.618382	Emx1_Emx2	ENSMUST00000052776.2|Hist1h2ba|ENSMUSG00000050799.2|histone cluster 1, H2ba
mm10_v2_chr4_+_110397764_110397808	0.613169	Emx1_Emx2	ENSMUST00000097920.2|Agbl4|ENSMUSG00000061298.8|ATP/GTP binding protein-like 4 	ENSMUST00000080744.6|Agbl4|ENSMUSG00000061298.8|ATP/GTP binding protein-like 4
mm10_v2_chr9_+_56418624_56418681	0.583755	Emx1_Emx2	ENSMUST00000034879.3|Hmg20a|ENSMUSG00000032329.3|high mobility group 20A
mm10_v2_chr7_-_30534180_30534180	0.58361	Emx1_Emx2	ENSMUST00000044338.4|Arhgap33|ENSMUSG00000036882.6|Rho GTPase activating protein 33
mm10_v2_chr6_-_144209448_144209469	0.582816	Emx1_Emx2	ENSMUST00000077160.5|Sox5|ENSMUSG00000041540.10|SRY-box containing gene 5
mm10_v2_chr6_-_129533267_129533275	0.57498	Emx1_Emx2	ENSMUST00000181594.1|1700101I11Rik|ENSMUSG00000097675.1|RIKEN cDNA 1700101I11 gene
mm10_v2_chr1_-_144177259_144177372	0.559967	Emx1_Emx2	ENSMUST00000111941.1|Rgs13|ENSMUSG00000051079.2|regulator of G-protein signaling 13 	ENSMUST00000052375.1|Rgs13|ENSMUSG00000051079.2|regulator of G-protein signaling 13
mm10_v2_chr5_+_135009152_135009317	0.551441	Emx1_Emx2	ENSMUST00000111216.1|Abhd11|ENSMUSG00000040532.8|abhydrolase domain containing 11 	ENSMUST00000046999.8|Abhd11|ENSMUSG00000040532.8|abhydrolase domain containing 11
mm10_v2_chr6_-_144209558_144209647	0.543756	Emx1_Emx2	ENSMUST00000111749.1|Sox5|ENSMUSG00000041540.10|SRY-box containing gene 5 	ENSMUST00000170367.2|Sox5|ENSMUSG00000041540.10|SRY-box containing gene 5
mm10_v2_chr15_+_99295087_99295279	0.528881	Emx1_Emx2	ENSMUST00000128352.1|Prpf40b|ENSMUSG00000023007.9|PRP40 pre-mRNA processing factor 40 homolog B (yeast) 	ENSMUST00000145482.1|Prpf40b|ENSMUSG00000023007.9|PRP40 pre-mRNA processing factor 40 homolog B (yeast)
mm10_v2_chr10_+_102158858_102158889	0.520385	Emx1_Emx2	ENSMUST00000138522.1|Mgat4c|ENSMUSG00000019888.9|mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme C (putative) 	ENSMUST00000163753.1|Mgat4c|ENSMUSG00000019888.9|mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme C (putative) 	ENSMUST00000138016.1|Mgat4c|ENSMUSG00000019888.9|mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme C (putative)
mm10_v2_chr18_-_6241486_6241550	0.517123	Emx1_Emx2	ENSMUST00000025083.7|Kif5b|ENSMUSG00000006740.7|kinesin family member 5B
mm10_v2_chr8_+_34054622_34054647	0.505836	Emx1_Emx2	ENSMUST00000149618.1|Gm9951|ENSMUSG00000054618.8|predicted gene 9951
mm10_v2_chr6_-_144209471_144209487	0.504206	Emx1_Emx2	ENSMUST00000038815.7|Sox5|ENSMUSG00000041540.10|SRY-box containing gene 5
mm10_v2_chrX_+_8271133_8271179	0.49408	Emx1_Emx2	ENSMUST00000127103.1|Slc38a5|ENSMUSG00000031170.8|solute carrier family 38, member 5 	ENSMUST00000115591.1|Slc38a5|ENSMUSG00000031170.8|solute carrier family 38, member 5
mm10_v2_chr1_-_184999549_184999549	0.490432	Emx1_Emx2	ENSMUST00000027929.4|Mark1|ENSMUSG00000026620.6|MAP/microtubule affinity-regulating kinase 1
mm10_v2_chr7_+_39588931_39588931	0.489571	Emx1_Emx2	ENSMUST00000178791.1|Gm2058|ENSMUSG00000074903.4|predicted gene 2058 	ENSMUST00000098511.3|Gm2058|ENSMUSG00000074903.4|predicted gene 2058
mm10_v2_chr17_-_47043039_47043039	0.480337	Emx1_Emx2	ENSMUST00000075152.5|Gm4945|ENSMUSG00000062472.5|predicted gene 4945
mm10_v2_chr3_+_32436151_32436151	0.478265	Emx1_Emx2	ENSMUST00000029201.7|Pik3ca|ENSMUSG00000027665.7|phosphatidylinositol 3-kinase, catalytic, alpha polypeptide
mm10_v2_chr14_+_58893465_58893506	0.459879	Emx1_Emx2	ENSMUST00000079960.1|Rpl13-ps3|ENSMUSG00000059835.1|ribosomal protein L13, pseudogene 3
mm10_v2_chr2_+_175469985_175470063	0.455919	Emx1_Emx2	ENSMUST00000109042.3|Gm8923|ENSMUSG00000078896.5|predicted gene 8923 	ENSMUST00000109002.2|Gm8923|ENSMUSG00000078896.5|predicted gene 8923 	ENSMUST00000109043.2|Gm8923|ENSMUSG00000078896.5|predicted gene 8923 	ENSMUST00000143490.1|Gm8923|ENSMUSG00000078896.5|predicted gene 8923
mm10_v2_chr7_-_5413145_5413145	0.453145	Emx1_Emx2	ENSMUST00000108569.2|Vmn1r58|ENSMUSG00000078808.4|vomeronasal 1 receptor 58
mm10_v2_chr8_+_93810832_93810843	0.444908	Emx1_Emx2	ENSMUST00000034198.8|Gnao1|ENSMUSG00000031748.9|guanine nucleotide binding protein, alpha O 	ENSMUST00000125716.1|Gnao1|ENSMUSG00000031748.9|guanine nucleotide binding protein, alpha O
mm10_v2_chr18_-_73754457_73754503	0.443743	Emx1_Emx2	ENSMUST00000041138.2|Elac1|ENSMUSG00000036941.2|elaC homolog 1 (E. coli)
mm10_v2_chr14_-_57133585_57133618	0.440916	Emx1_Emx2	ENSMUST00000039380.8|Gjb6|ENSMUSG00000040055.8|gap junction protein, beta 6
mm10_v2_chr2_+_175372436_175372492	0.437207	Emx1_Emx2	ENSMUST00000131676.1|Gm4723|ENSMUSG00000078898.3|predicted gene 4723 	ENSMUST00000109048.2|Gm4723|ENSMUSG00000078898.3|predicted gene 4723 	ENSMUST00000109047.2|Gm4723|ENSMUSG00000078898.3|predicted gene 4723
mm10_v2_chr13_-_97747373_97747384	0.436103	Emx1_Emx2	ENSMUST00000123535.1|5330416C01Rik|ENSMUSG00000054944.7|RIKEN cDNA 5330416C01 gene
mm10_v2_chr7_+_129591859_129591871	0.433752	Emx1_Emx2	ENSMUST00000084519.5|Wdr11|ENSMUSG00000042055.7|WD repeat domain 11
mm10_v2_chr17_-_45599603_45599623	0.419835	Emx1_Emx2	ENSMUST00000171847.1|Slc29a1|ENSMUSG00000023942.9|solute carrier family 29 (nucleoside transporters), member 1 	ENSMUST00000166633.1|Slc29a1|ENSMUSG00000023942.9|solute carrier family 29 (nucleoside transporters), member 1 	ENSMUST00000169729.1|Slc29a1|ENSMUSG00000023942.9|solute carrier family 29 (nucleoside transporters), member 1
mm10_v2_chr4_+_32657107_32657166	0.398885	Emx1_Emx2	ENSMUST00000071642.4|Mdn1|ENSMUSG00000058006.6|midasin homolog (yeast) 	ENSMUST00000178134.1|Mdn1|ENSMUSG00000058006.6|midasin homolog (yeast)
mm10_v2_chr4_-_64276595_64276604	0.398722	Emx1_Emx2	ENSMUST00000141162.1|Gm11217|ENSMUSG00000085032.1|predicted gene 11217
mm10_v2_chr4_+_83417715_83417758	0.390242	Emx1_Emx2	ENSMUST00000030206.3|Snapc3|ENSMUSG00000028483.7|small nuclear RNA activating complex, polypeptide 3 	ENSMUST00000071544.4|Snapc3|ENSMUSG00000028483.7|small nuclear RNA activating complex, polypeptide 3
mm10_v2_chr3_-_151749877_151749919	0.384321	Emx1_Emx2	ENSMUST00000029671.7|Ifi44|ENSMUSG00000028037.7|interferon-induced protein 44
mm10_v2_chr3_-_37125943_37125969	0.384279	Emx1_Emx2	ENSMUST00000029275.5|Il2|ENSMUSG00000027720.7|interleukin 2
mm10_v2_chr2_-_175703646_175703646	0.380677	Emx1_Emx2	ENSMUST00000109027.2|Gm4245|ENSMUSG00000095545.1|predicted gene 4245 	ENSMUST00000179061.1|Gm4245|ENSMUSG00000095545.1|predicted gene 4245 	ENSMUST00000131041.1|Gm4245|ENSMUSG00000095545.1|predicted gene 4245
mm10_v2_chrX_-_150814265_150814345	0.372627	Emx1_Emx2	ENSMUST00000026302.6|Maged2|ENSMUSG00000025268.9|melanoma antigen, family D, 2 	ENSMUST00000129768.1|Maged2|ENSMUSG00000025268.9|melanoma antigen, family D, 2 	ENSMUST00000112699.2|Maged2|ENSMUSG00000025268.9|melanoma antigen, family D, 2
mm10_v2_chr17_+_29274078_29274129	0.369999	Emx1_Emx2	ENSMUST00000149405.2|BC004004|ENSMUSG00000052712.10|cDNA sequence BC004004
mm10_v2_chr8_-_85432841_85432859	0.366297	Emx1_Emx2	ENSMUST00000047749.5|4921524J17Rik|ENSMUSG00000036934.8|RIKEN cDNA 4921524J17 gene
mm10_v2_chr8_-_8690493_8690538	0.363299	Emx1_Emx2	ENSMUST00000048545.8|Arglu1|ENSMUSG00000040459.10|arginine and glutamate rich 1
mm10_v2_chr2_-_34826071_34826087	0.362309	Emx1_Emx2	ENSMUST00000113077.1|Fbxw2|ENSMUSG00000035949.9|F-box and WD-40 domain protein 2 	ENSMUST00000028220.3|Fbxw2|ENSMUSG00000035949.9|F-box and WD-40 domain protein 2
mm10_v2_chr17_-_45686899_45686923	0.358271	Emx1_Emx2	ENSMUST00000156254.1|Tmem63b|ENSMUSG00000036026.9|transmembrane protein 63b
mm10_v2_chr9_+_72958785_72958850	0.357927	Emx1_Emx2	ENSMUST00000098567.2|Dyx1c1|ENSMUSG00000092192.1|dyslexia susceptibility 1 candidate 1 homolog (human) 	ENSMUST00000034734.8|Dyx1c1|ENSMUSG00000092192.1|dyslexia susceptibility 1 candidate 1 homolog (human)
mm10_v2_chr17_+_46772635_46772635	0.357192	Emx1_Emx2	ENSMUST00000071430.5|2310039H08Rik|ENSMUSG00000062619.5|RIKEN cDNA 2310039H08 gene
mm10_v2_chr2_+_144594054_144594083	0.356106	Emx1_Emx2	ENSMUST00000136628.1|Gm561|ENSMUSG00000074754.4|predicted gene 561
mm10_v2_chr2_-_37647199_37647285	0.35201	Emx1_Emx2	ENSMUST00000028279.3|Strbp|ENSMUSG00000026915.10|spermatid perinuclear RNA binding protein
mm10_v2_chr12_-_12940600_12940616	0.34904	Emx1_Emx2	ENSMUST00000130990.1|Mycn|ENSMUSG00000037169.8|v-myc myelocytomatosis viral related oncogene, neuroblastoma derived (avian)
mm10_v2_chr17_+_45734506_45734630	0.347179	Emx1_Emx2	ENSMUST00000180558.1|F630040K05Rik|ENSMUSG00000097727.1|RIKEN cDNA F630040K05 gene
mm10_v2_chr4_-_155645408_155645408	0.346272	Emx1_Emx2	ENSMUST00000115821.2|Gm10563|ENSMUSG00000073682.3|predicted gene 10563
mm10_v2_chr8_+_85432686_85432686	0.342449	Emx1_Emx2	ENSMUST00000180883.1|1700051O22Rik|ENSMUSG00000096933.1|RIKEN cDNA 1700051O22 Gene
mm10_v2_chr5_-_139345149_139345233	0.342068	Emx1_Emx2	ENSMUST00000049630.6|Cox19|ENSMUSG00000045438.6|cytochrome c oxidase assembly protein 19
mm10_v2_chr16_-_59553970_59553970	0.335924	Emx1_Emx2	ENSMUST00000139989.1|Crybg3|ENSMUSG00000022723.9|beta-gamma crystallin domain containing 3
mm10_v2_chrX_+_106027300_106027323	0.334593	Emx1_Emx2	ENSMUST00000055941.6|Atp7a|ENSMUSG00000033792.6|ATPase, Cu++ transporting, alpha polypeptide
mm10_v2_chr5_-_121502980_121502980	0.328037	Emx1_Emx2	ENSMUST00000079368.3|Adam1b|ENSMUSG00000062438.3|a disintegrin and metallopeptidase domain 1b
mm10_v2_chr11_+_72689997_72690015	0.318747	Emx1_Emx2	ENSMUST00000155998.1|Ankfy1|ENSMUSG00000020790.8|ankyrin repeat and FYVE domain containing 1
mm10_v2_chr15_+_80711292_80711340	0.314093	Emx1_Emx2	ENSMUST00000067689.7|Tnrc6b|ENSMUSG00000047888.9|trinucleotide repeat containing 6b
mm10_v2_chr12_-_87388317_87388355	0.308644	Emx1_Emx2	ENSMUST00000021424.4|Sptlc2|ENSMUSG00000021036.4|serine palmitoyltransferase, long chain base subunit 2
mm10_v2_chr17_+_14943184_14943281	0.299174	Emx1_Emx2	ENSMUST00000052691.8|1600012H06Rik|ENSMUSG00000050088.9|RIKEN cDNA 1600012H06 gene 	ENSMUST00000164837.2|1600012H06Rik|ENSMUSG00000050088.9|RIKEN cDNA 1600012H06 gene 	ENSMUST00000174004.1|1600012H06Rik|ENSMUSG00000050088.9|RIKEN cDNA 1600012H06 gene
mm10_v2_chrX_+_106027259_106027293	0.298354	Emx1_Emx2	ENSMUST00000113557.1|Atp7a|ENSMUSG00000033792.6|ATPase, Cu++ transporting, alpha polypeptide
mm10_v2_chr2_-_34826187_34826240	0.29226	Emx1_Emx2	ENSMUST00000113075.1|Fbxw2|ENSMUSG00000035949.9|F-box and WD-40 domain protein 2 	ENSMUST00000113080.2|Fbxw2|ENSMUSG00000035949.9|F-box and WD-40 domain protein 2 	ENSMUST00000091020.3|Fbxw2|ENSMUSG00000035949.9|F-box and WD-40 domain protein 2
mm10_v2_chr3_-_130730375_130730398	0.28458	Emx1_Emx2	ENSMUST00000079085.6|Rpl34|ENSMUSG00000062006.6|ribosomal protein L34
mm10_v2_chr2_-_5676046_5676065	0.284233	Emx1_Emx2	ENSMUST00000114987.3|Camk1d|ENSMUSG00000039145.10|calcium/calmodulin-dependent protein kinase ID
mm10_v2_chr16_+_21794320_21794381	0.276329	Emx1_Emx2	ENSMUST00000181780.1|1300002E11Rik|ENSMUSG00000097290.1|RIKEN cDNA 1300002E11 gene 	ENSMUST00000181960.1|1300002E11Rik|ENSMUSG00000097290.1|RIKEN cDNA 1300002E11 gene
mm10_v2_chrX_-_160994665_160994702	0.273685	Emx1_Emx2	ENSMUST00000087104.4|Cdkl5|ENSMUSG00000031292.8|cyclin-dependent kinase-like 5
mm10_v2_chr4_-_150914401_150914480	0.269889	Emx1_Emx2	ENSMUST00000105675.1|Park7|ENSMUSG00000028964.8|Parkinson disease (autosomal recessive, early onset) 7
mm10_v2_chr18_-_6241470_6241482	0.266074	Emx1_Emx2	ENSMUST00000163210.1|Kif5b|ENSMUSG00000006740.7|kinesin family member 5B
mm10_v2_chr9_-_124304718_124304718	0.259287	Emx1_Emx2	ENSMUST00000071300.6|2010315B03Rik|ENSMUSG00000074829.4|RIKEN cDNA 2010315B03 gene
mm10_v2_chr9_+_108648720_108648840	0.254224	Emx1_Emx2	ENSMUST00000098384.2|Gm10621|ENSMUSG00000074075.2|predicted gene 10621
mm10_v2_chr12_+_36314160_36314171	0.246863	Emx1_Emx2	ENSMUST00000041407.5|Sostdc1|ENSMUSG00000036169.5|sclerostin domain containing 1
mm10_v2_chr3_+_121531603_121531634	0.230121	Emx1_Emx2	ENSMUST00000180804.1|A530020G20Rik|ENSMUSG00000097124.1|RIKEN cDNA A530020G20 gene
mm10_v2_chr4_+_41966058_41966058	0.22832	Emx1_Emx2	ENSMUST00000108026.2|Gm20938|ENSMUSG00000078746.2|predicted gene, 20938
mm10_v2_chr2_+_36230426_36230491	0.227747	Emx1_Emx2	ENSMUST00000062069.5|Ptgs1|ENSMUSG00000047250.7|prostaglandin-endoperoxide synthase 1
mm10_v2_chr6_+_124304646_124304671	0.221203	Emx1_Emx2	ENSMUST00000112541.2|Cd163|ENSMUSG00000008845.3|CD163 antigen 	ENSMUST00000032234.2|Cd163|ENSMUSG00000008845.3|CD163 antigen
mm10_v2_chr9_-_53667429_53667521	0.216509	Emx1_Emx2	ENSMUST00000166367.1|Cul5|ENSMUSG00000032030.10|cullin 5 	ENSMUST00000034529.7|Cul5|ENSMUSG00000032030.10|cullin 5
mm10_v2_chrX_-_74393003_74393072	0.214292	Emx1_Emx2	ENSMUST00000015427.6|Fam3a|ENSMUSG00000031399.9|family with sequence similarity 3, member A
mm10_v2_chr3_-_146495115_146495139	0.210539	Emx1_Emx2	ENSMUST00000093951.2|Spata1|ENSMUSG00000028188.7|spermatogenesis associated 1
mm10_v2_chr1_-_23909687_23909706	0.210368	Emx1_Emx2	ENSMUST00000129254.1|Smap1|ENSMUSG00000026155.7|small ArfGAP 1
mm10_v2_chrX_-_102505359_102505412	0.194282	Emx1_Emx2	ENSMUST00000087916.4|Hdac8|ENSMUSG00000067567.6|histone deacetylase 8
mm10_v2_chr6_+_17749170_17749265	0.194219	Emx1_Emx2	ENSMUST00000053148.7|St7|ENSMUSG00000029534.11|suppression of tumorigenicity 7 	ENSMUST00000115417.3|St7|ENSMUSG00000029534.11|suppression of tumorigenicity 7
mm10_v2_chrM_+_2743_2761	0.19189	Emx1_Emx2	ENSMUST00000082392.1|mt-Nd1|ENSMUSG00000064341.1|mitochondrially encoded NADH dehydrogenase 1
mm10_v2_chr14_+_53324632_53324632	0.190398	Emx1_Emx2	ENSMUST00000178100.1|Trav7n-6|ENSMUSG00000095415.1|T cell receptor alpha variable 7N-6
mm10_v2_chr13_-_99516537_99516602	0.189097	Emx1_Emx2	ENSMUST00000064762.4|Map1b|ENSMUSG00000052727.5|microtubule-associated protein 1B
mm10_v2_chr7_+_126976338_126976400	0.181495	Emx1_Emx2	ENSMUST00000032920.3|Cdipt|ENSMUSG00000030682.3|CDP-diacylglycerol--inositol 3-phosphatidyltransferase (phosphatidylinositol synthase)
mm10_v2_chr1_-_37496095_37496156	0.177545	Emx1_Emx2	ENSMUST00000148047.1|Mgat4a|ENSMUSG00000026110.9|mannoside acetylglucosaminyltransferase 4, isoenzyme A 	ENSMUST00000143636.1|Mgat4a|ENSMUSG00000026110.9|mannoside acetylglucosaminyltransferase 4, isoenzyme A
mm10_v2_chr2_-_12419456_12419474	0.176695	Emx1_Emx2	ENSMUST00000154899.1|Fam188a|ENSMUSG00000026767.6|family with sequence similarity 188, member A 	ENSMUST00000028105.6|Fam188a|ENSMUSG00000026767.6|family with sequence similarity 188, member A
mm10_v2_chr2_+_69789647_69789749	0.176046	Emx1_Emx2	ENSMUST00000112266.1|Phospho2|ENSMUSG00000027088.4|phosphatase, orphan 2
mm10_v2_chr15_-_36496722_36496808	0.162925	Emx1_Emx2	ENSMUST00000057486.7|Ankrd46|ENSMUSG00000048307.7|ankyrin repeat domain 46
mm10_v2_chr5_-_28210022_28210034	0.160738	Emx1_Emx2	ENSMUST00000118882.1|Cnpy1|ENSMUSG00000044681.12|canopy 1 homolog (zebrafish)
mm10_v2_chr3_-_49757257_49757316	0.157406	Emx1_Emx2	ENSMUST00000035931.7|Pcdh18|ENSMUSG00000037892.8|protocadherin 18
mm10_v2_chrX_-_134111852_134111873	0.151325	Emx1_Emx2	ENSMUST00000033610.6|Nox1|ENSMUSG00000031257.8|NADPH oxidase 1
mm10_v2_chr10_-_25297055_25297101	0.148902	Emx1_Emx2	ENSMUST00000177124.1|Akap7|ENSMUSG00000039166.9|A kinase (PRKA) anchor protein 7
mm10_v2_chr10_-_76110956_76110962	0.142756	Emx1_Emx2	ENSMUST00000120757.1|Slc5a4b|ENSMUSG00000020226.9|solute carrier family 5 (neutral amino acid transporters, system A), member 4b
mm10_v2_chr2_-_12419387_12419399	0.141406	Emx1_Emx2	ENSMUST00000124515.1|Fam188a|ENSMUSG00000026767.6|family with sequence similarity 188, member A
mm10_v2_chr7_-_84679346_84679401	0.136351	Emx1_Emx2	ENSMUST00000069537.2|Zfand6|ENSMUSG00000030629.8|zinc finger, AN1-type domain 6 	ENSMUST00000178385.1|Zfand6|ENSMUSG00000030629.8|zinc finger, AN1-type domain 6
mm10_v2_chr10_+_128322443_128322476	0.135681	Emx1_Emx2	ENSMUST00000026446.2|Cnpy2|ENSMUSG00000025381.2|canopy 2 homolog (zebrafish)
mm10_v2_chr6_+_37870786_37870882	0.129246	Emx1_Emx2	ENSMUST00000120428.1|Trim24|ENSMUSG00000029833.11|tripartite motif-containing 24 	ENSMUST00000031859.7|Trim24|ENSMUSG00000029833.11|tripartite motif-containing 24
mm10_v2_chr4_-_134245579_134245604	0.109516	Emx1_Emx2	ENSMUST00000030644.7|Zfp593|ENSMUSG00000028840.10|zinc finger protein 593
mm10_v2_chr4_+_102589687_102589843	0.102189	Emx1_Emx2	ENSMUST00000097949.4|Pde4b|ENSMUSG00000028525.10|phosphodiesterase 4B, cAMP specific 	ENSMUST00000106901.1|Pde4b|ENSMUSG00000028525.10|phosphodiesterase 4B, cAMP specific
mm10_v2_chr13_+_94976435_94976452	0.0968476	Emx1_Emx2	ENSMUST00000160409.1|Wdr41|ENSMUSG00000042015.10|WD repeat domain 41 	ENSMUST00000159647.1|Wdr41|ENSMUSG00000042015.10|WD repeat domain 41 	ENSMUST00000167155.1|Wdr41|ENSMUSG00000042015.10|WD repeat domain 41
mm10_v2_chr7_-_142661858_142661880	0.0900433	Emx1_Emx2	ENSMUST00000145896.2|Igf2|ENSMUSG00000048583.10|insulin-like growth factor 2
mm10_v2_chr8_+_31089471_31089760	0.0843279	Emx1_Emx2	ENSMUST00000036631.7|Dusp26|ENSMUSG00000039661.8|dual specificity phosphatase 26 (putative) 	ENSMUST00000170204.1|Dusp26|ENSMUSG00000039661.8|dual specificity phosphatase 26 (putative)
mm10_v2_chr14_-_18893376_18893420	0.0768101	Emx1_Emx2	ENSMUST00000151926.1|Ube2e2|ENSMUSG00000058317.5|ubiquitin-conjugating enzyme E2E 2
mm10_v2_chr7_-_42706369_42706369	0.0708213	Emx1_Emx2	ENSMUST00000180131.1|Gm17067|ENSMUSG00000095144.1|predicted gene 17067
mm10_v2_chr3_+_88716838_88716883	0.0671951	Emx1_Emx2	ENSMUST00000029692.8|Rit1|ENSMUSG00000028057.8|Ras-like without CAAX 1 	ENSMUST00000171645.1|Rit1|ENSMUSG00000028057.8|Ras-like without CAAX 1
mm10_v2_chr1_-_97761538_97761609	0.0655544	Emx1_Emx2	ENSMUST00000171129.1|Ppip5k2|ENSMUSG00000040648.8|diphosphoinositol pentakisphosphate kinase 2
mm10_v2_chr2_-_155930190_155930310	0.0582593	Emx1_Emx2	ENSMUST00000109636.4|Uqcc1|ENSMUSG00000005882.12|ubiquinol-cytochrome c reductase complex assembly factor 1 	ENSMUST00000109631.1|Uqcc1|ENSMUSG00000005882.12|ubiquinol-cytochrome c reductase complex assembly factor 1
mm10_v2_chr5_+_121749196_121749196	0.0513442	Emx1_Emx2	ENSMUST00000161064.1|Atxn2|ENSMUSG00000042605.9|ataxin 2
mm10_v2_chr15_+_16778101_16778101	0.0506357	Emx1_Emx2	ENSMUST00000026432.6|Cdh9|ENSMUSG00000025370.6|cadherin 9
mm10_v2_chr11_+_17257558_17257688	0.0455996	Emx1_Emx2	ENSMUST00000000594.2|C1d|ENSMUSG00000000581.2|C1D nuclear receptor co-repressor 	ENSMUST00000156784.1|C1d|ENSMUSG00000000581.2|C1D nuclear receptor co-repressor
mm10_v2_chr6_-_89595647_89595658	0.0386535	Emx1_Emx2	ENSMUST00000032172.8|Chchd6|ENSMUSG00000030086.10|coiled-coil-helix-coiled-coil-helix domain containing 6 	ENSMUST00000113550.3|Chchd6|ENSMUSG00000030086.10|coiled-coil-helix-coiled-coil-helix domain containing 6
mm10_v2_chrM_+_11734_11757	0.0373656	Emx1_Emx2	ENSMUST00000082418.1|mt-Nd5|ENSMUSG00000064367.1|mitochondrially encoded NADH dehydrogenase 5
mm10_v2_chr12_+_80463095_80463179	0.0284431	Emx1_Emx2	ENSMUST00000038185.8|Exd2|ENSMUSG00000032705.8|exonuclease 3'-5' domain containing 2
mm10_v2_chr13_+_23763660_23763674	0.0239992	Emx1_Emx2	ENSMUST00000055770.1|Hist1h1a|ENSMUSG00000049539.1|histone cluster 1, H1a
mm10_v2_chr4_-_94603239_94603253	0.0221979	Emx1_Emx2	ENSMUST00000107107.2|Plaa|ENSMUSG00000028577.7|phospholipase A2, activating protein
mm10_v2_chr2_-_73580288_73580353	0.0200336	Emx1_Emx2	ENSMUST00000028515.3|Chrna1|ENSMUSG00000027107.3|cholinergic receptor, nicotinic, alpha polypeptide 1 (muscle)
mm10_v2_chr4_-_149099802_149099876	0.0158242	Emx1_Emx2	ENSMUST00000103217.4|Pex14|ENSMUSG00000028975.10|peroxisomal biogenesis factor 14
mm10_v2_chr11_+_6560183_6560240	0.0063675	Emx1_Emx2	ENSMUST00000109722.2|Ccm2|ENSMUSG00000000378.9|cerebral cavernous malformation 2
mm10_v2_chr11_+_5788480_5788560	0.00365685	Emx1_Emx2	ENSMUST00000109845.1|Dbnl|ENSMUSG00000020476.8|drebrin-like 	ENSMUST00000020769.7|Dbnl|ENSMUSG00000020476.8|drebrin-like 	ENSMUST00000102928.4|Dbnl|ENSMUSG00000020476.8|drebrin-like
