mm10_v2_chr6_+_8948608_8948619	3.27861	En2	ENSMUST00000160300.1|Nxph1|ENSMUSG00000046178.3|neurexophilin 1
mm10_v2_chr5_-_62766153_62766246	3.17435	En2	ENSMUST00000076623.4|Arap2|ENSMUSG00000037999.9|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2
mm10_v2_chr2_+_25372315_25372368	2.89761	En2	ENSMUST00000028329.6|Sapcd2|ENSMUSG00000026955.7|suppressor APC domain containing 2 	ENSMUST00000114293.2|Sapcd2|ENSMUSG00000026955.7|suppressor APC domain containing 2 	ENSMUST00000100323.2|Sapcd2|ENSMUSG00000026955.7|suppressor APC domain containing 2
mm10_v2_chr13_+_23574381_23574449	2.75648	En2	ENSMUST00000090776.4|Hist1h2ad|ENSMUSG00000071478.4|histone cluster 1, H2ad
mm10_v2_chrX_-_60893430_60893440	2.69955	En2	ENSMUST00000135107.2|Sox3|ENSMUSG00000045179.8|SRY-box containing gene 3
mm10_v2_chr14_-_67715585_67715681	2.61103	En2	ENSMUST00000163100.1|Cdca2|ENSMUSG00000048922.12|cell division cycle associated 2 	ENSMUST00000132705.1|Cdca2|ENSMUSG00000048922.12|cell division cycle associated 2 	ENSMUST00000124045.1|Cdca2|ENSMUSG00000048922.12|cell division cycle associated 2
mm10_v2_chr4_+_109978004_109978053	2.47116	En2	ENSMUST00000061187.3|Dmrta2|ENSMUSG00000047143.3|doublesex and mab-3 related transcription factor like family A2
mm10_v2_chr5_-_53707532_53707704	2.14624	En2	ENSMUST00000031093.3|Cckar|ENSMUSG00000029193.4|cholecystokinin A receptor
mm10_v2_chr10_+_73821857_73821883	2.06447	En2	ENSMUST00000177128.1|Pcdh15|ENSMUSG00000052613.10|protocadherin 15 	ENSMUST00000064562.7|Pcdh15|ENSMUSG00000052613.10|protocadherin 15 	ENSMUST00000129404.2|Pcdh15|ENSMUSG00000052613.10|protocadherin 15 	ENSMUST00000105426.3|Pcdh15|ENSMUSG00000052613.10|protocadherin 15 	ENSMUST00000131321.2|Pcdh15|ENSMUSG00000052613.10|protocadherin 15 	ENSMUST00000126920.2|Pcdh15|ENSMUSG00000052613.10|protocadherin 15 	ENSMUST00000147189.2|Pcdh15|ENSMUSG00000052613.10|protocadherin 15 	ENSMUST00000105424.3|Pcdh15|ENSMUSG00000052613.10|protocadherin 15 	ENSMUST00000092420.6|Pcdh15|ENSMUSG00000052613.10|protocadherin 15 	ENSMUST00000105429.3|Pcdh15|ENSMUSG00000052613.10|protocadherin 15 	ENSMUST00000131724.2|Pcdh15|ENSMUSG00000052613.10|protocadherin 15 	ENSMUST00000152655.2|Pcdh15|ENSMUSG00000052613.10|protocadherin 15 	ENSMUST00000151116.2|Pcdh15|ENSMUSG00000052613.10|protocadherin 15 	ENSMUST00000155701.2|Pcdh15|ENSMUSG00000052613.10|protocadherin 15 	ENSMUST00000152819.2|Pcdh15|ENSMUSG00000052613.10|protocadherin 15 	ENSMUST00000125517.2|Pcdh15|ENSMUSG00000052613.10|protocadherin 15 	ENSMUST00000124046.1|Pcdh15|ENSMUSG00000052613.10|protocadherin 15 	ENSMUST00000149977.2|Pcdh15|ENSMUSG00000052613.10|protocadherin 15 	ENSMUST00000146682.1|Pcdh15|ENSMUSG00000052613.10|protocadherin 15 	ENSMUST00000177107.1|Pcdh15|ENSMUSG00000052613.10|protocadherin 15
mm10_v2_chr5_-_77115145_77115156	1.93047	En2	ENSMUST00000081964.5|Hopx|ENSMUSG00000059325.8|HOP homeobox
mm10_v2_chr5_+_33658123_33658160	1.84189	En2	ENSMUST00000074849.6|Tacc3|ENSMUSG00000037313.10|transforming, acidic coiled-coil containing protein 3 	ENSMUST00000079534.4|Tacc3|ENSMUSG00000037313.10|transforming, acidic coiled-coil containing protein 3
mm10_v2_chr2_+_20737306_20737321	1.83882	En2	ENSMUST00000114606.1|Etl4|ENSMUSG00000036617.10|enhancer trap locus 4 	ENSMUST00000114608.1|Etl4|ENSMUSG00000036617.10|enhancer trap locus 4
mm10_v2_chr3_-_27153861_27153878	1.83627	En2	ENSMUST00000108300.1|Ect2|ENSMUSG00000027699.13|ect2 oncogene 	ENSMUST00000108298.2|Ect2|ENSMUSG00000027699.13|ect2 oncogene
mm10_v2_chr13_-_47106176_47106206	1.80151	En2	ENSMUST00000021807.6|Dek|ENSMUSG00000021377.8|DEK oncogene (DNA binding) 	ENSMUST00000135278.1|Dek|ENSMUSG00000021377.8|DEK oncogene (DNA binding)
mm10_v2_chr5_+_139543889_139543904	1.74622	En2	ENSMUST00000174792.1|Uncx|ENSMUSG00000029546.11|UNC homeobox 	ENSMUST00000031523.8|Uncx|ENSMUSG00000029546.11|UNC homeobox
mm10_v2_chr3_-_27153844_27153855	1.67957	En2	ENSMUST00000176242.2|Ect2|ENSMUSG00000027699.13|ect2 oncogene 	ENSMUST00000176780.1|Ect2|ENSMUSG00000027699.13|ect2 oncogene
mm10_v2_chr13_+_23544052_23544052	1.6696	En2	ENSMUST00000075558.2|Hist1h3f|ENSMUSG00000059309.2|histone cluster 1, H3f
mm10_v2_chr18_-_80986578_80986578	1.66486	En2	ENSMUST00000057950.7|Sall3|ENSMUSG00000024565.8|sal-like 3 (Drosophila)
mm10_v2_chr5_+_33658567_33658616	1.52622	En2	ENSMUST00000114426.3|Tacc3|ENSMUSG00000037313.10|transforming, acidic coiled-coil containing protein 3
mm10_v2_chr13_+_21717626_21717631	1.52241	En2	ENSMUST00000091754.2|Hist1h3h|ENSMUSG00000069312.2|histone cluster 1, H3h
mm10_v2_chr9_+_65890237_65890343	1.52055	En2	ENSMUST00000045802.6|2810417H13Rik|ENSMUSG00000040204.6|RIKEN cDNA 2810417H13 gene
mm10_v2_chr3_+_88207308_88207328	1.40618	En2	ENSMUST00000180582.1|Gm3764|ENSMUSG00000097156.1|predicted gene 3764
mm10_v2_chr4_+_62583568_62583601	1.37284	En2	ENSMUST00000098031.3|Rgs3|ENSMUSG00000059810.12|regulator of G-protein signaling 3
mm10_v2_chr10_+_26772477_26772515	1.33876	En2	ENSMUST00000039557.7|Arhgap18|ENSMUSG00000039031.9|Rho GTPase activating protein 18
mm10_v2_chr3_+_76075583_76075583	1.33736	En2	ENSMUST00000160261.1|Fstl5|ENSMUSG00000034098.8|follistatin-like 5
mm10_v2_chr4_+_130047840_130047901	1.33564	En2	ENSMUST00000044565.8|Col16a1|ENSMUSG00000040690.9|collagen, type XVI, alpha 1 	ENSMUST00000132251.1|Col16a1|ENSMUSG00000040690.9|collagen, type XVI, alpha 1
mm10_v2_chr5_+_33658550_33658563	1.33168	En2	ENSMUST00000152847.1|Tacc3|ENSMUSG00000037313.10|transforming, acidic coiled-coil containing protein 3
mm10_v2_chr6_+_146888481_146888589	1.33139	En2	ENSMUST00000016631.7|Ppfibp1|ENSMUSG00000016487.9|PTPRF interacting protein, binding protein 1 (liprin beta 1) 	ENSMUST00000111623.2|Ppfibp1|ENSMUSG00000016487.9|PTPRF interacting protein, binding protein 1 (liprin beta 1)
mm10_v2_chr7_+_29071597_29071613	1.28972	En2	ENSMUST00000180926.1|Gm26604|ENSMUSG00000097079.1|predicted gene, 26604
mm10_v2_chrX_+_134308084_134308209	1.28761	En2	ENSMUST00000081064.5|Cenpi|ENSMUSG00000031262.6|centromere protein I 	ENSMUST00000101251.1|Cenpi|ENSMUSG00000031262.6|centromere protein I 	ENSMUST00000129782.1|Cenpi|ENSMUSG00000031262.6|centromere protein I
mm10_v2_chrM_+_7005_7022	1.26809	En2	ENSMUST00000082405.1|mt-Co2|ENSMUSG00000064354.1|mitochondrially encoded cytochrome c oxidase II
mm10_v2_chr5_-_84417359_84417389	1.185	En2	ENSMUST00000113401.1|Epha5|ENSMUSG00000029245.10|Eph receptor A5
mm10_v2_chr11_-_102946688_102946725	1.12315	En2	ENSMUST00000057849.5|C1ql1|ENSMUSG00000045532.5|complement component 1, q subcomponent-like 1
mm10_v2_chr3_+_96268654_96268683	1.10144	En2	ENSMUST00000098843.2|Hist2h3b|ENSMUSG00000074403.2|histone cluster 2, H3b
mm10_v2_chr16_+_45093611_45093622	1.0888	En2	ENSMUST00000099498.2|Ccdc80|ENSMUSG00000022665.8|coiled-coil domain containing 80
mm10_v2_chr2_+_62664279_62664300	1.08446	En2	ENSMUST00000028257.2|Gca|ENSMUSG00000026893.4|grancalcin
mm10_v2_chr14_-_55560340_55560406	1.07848	En2	ENSMUST00000066106.3|A730061H03Rik|ENSMUSG00000053588.3|RIKEN cDNA A730061H03 gene
mm10_v2_chr6_-_146502141_146502230	1.07221	En2	ENSMUST00000079573.6|Itpr2|ENSMUSG00000030287.9|inositol 1,4,5-triphosphate receptor 2 	ENSMUST00000139732.1|Itpr2|ENSMUSG00000030287.9|inositol 1,4,5-triphosphate receptor 2
mm10_v2_chr2_+_116067213_116067250	1.06746	En2	ENSMUST00000152412.1|G630016G05Rik|ENSMUSG00000086308.1|RIKEN cDNA G630016G05 gene
mm10_v2_chr4_+_21848039_21848077	1.04421	En2	ENSMUST00000098238.2|Sfrs18|ENSMUSG00000028248.9|serine/arginine-rich splicing factor 18 	ENSMUST00000108229.1|Sfrs18|ENSMUSG00000028248.9|serine/arginine-rich splicing factor 18
mm10_v2_chr12_+_38780284_38780349	1.02809	En2	ENSMUST00000162563.1|Etv1|ENSMUSG00000004151.10|ets variant gene 1 	ENSMUST00000161164.1|Etv1|ENSMUSG00000004151.10|ets variant gene 1 	ENSMUST00000160996.1|Etv1|ENSMUSG00000004151.10|ets variant gene 1
mm10_v2_chr8_+_83955507_83955507	1.02089	En2	ENSMUST00000005607.8|Asf1b|ENSMUSG00000005470.8|ASF1 anti-silencing function 1 homolog B (S. cerevisiae)
mm10_v2_chr19_-_15924928_15925059	1.0079	En2	ENSMUST00000025542.3|Psat1|ENSMUSG00000024640.3|phosphoserine aminotransferase 1
mm10_v2_chr17_+_34039437_34039481	1.00498	En2	ENSMUST00000131134.1|Col11a2|ENSMUSG00000024330.10|collagen, type XI, alpha 2 	ENSMUST00000087497.4|Col11a2|ENSMUSG00000024330.10|collagen, type XI, alpha 2 	ENSMUST00000114255.1|Col11a2|ENSMUSG00000024330.10|collagen, type XI, alpha 2 	ENSMUST00000114252.1|Col11a2|ENSMUSG00000024330.10|collagen, type XI, alpha 2
mm10_v2_chrX_+_56454871_56454887	0.980739	En2	ENSMUST00000039374.2|Ddx26b|ENSMUSG00000035967.9|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 26B 	ENSMUST00000101553.2|Ddx26b|ENSMUSG00000035967.9|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 26B
mm10_v2_chr12_+_38780817_38780854	0.964899	En2	ENSMUST00000160856.1|Etv1|ENSMUSG00000004151.10|ets variant gene 1
mm10_v2_chr8_-_45382198_45382291	0.950891	En2	ENSMUST00000093526.6|Fam149a|ENSMUSG00000070044.9|family with sequence similarity 149, member A
mm10_v2_chr5_-_62765618_62765656	0.910394	En2	ENSMUST00000159470.1|Arap2|ENSMUSG00000037999.9|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2
mm10_v2_chrX_-_134111852_134111873	0.874747	En2	ENSMUST00000033610.6|Nox1|ENSMUSG00000031257.8|NADPH oxidase 1
mm10_v2_chrX_-_57338598_57338729	0.872791	En2	ENSMUST00000033468.4|Arhgef6|ENSMUSG00000031133.6|Rac/Cdc42 guanine nucleotide exchange factor (GEF) 6 	ENSMUST00000114736.1|Arhgef6|ENSMUSG00000031133.6|Rac/Cdc42 guanine nucleotide exchange factor (GEF) 6
mm10_v2_chr1_+_104768510_104768529	0.856185	En2	ENSMUST00000062528.8|Cdh20|ENSMUSG00000050840.8|cadherin 20
mm10_v2_chrM_+_10167_10167	0.82697	En2	ENSMUST00000082414.1|mt-Nd4|ENSMUSG00000064363.1|mitochondrially encoded NADH dehydrogenase 4
mm10_v2_chrX_-_37110257_37110346	0.814158	En2	ENSMUST00000076265.6|Upf3b|ENSMUSG00000036572.10|UPF3 regulator of nonsense transcripts homolog B (yeast)
mm10_v2_chr14_+_67716095_67716151	0.810584	En2	ENSMUST00000078053.6|Kctd9|ENSMUSG00000034327.11|potassium channel tetramerisation domain containing 9 	ENSMUST00000145542.1|Kctd9|ENSMUSG00000034327.11|potassium channel tetramerisation domain containing 9 	ENSMUST00000125212.1|Kctd9|ENSMUSG00000034327.11|potassium channel tetramerisation domain containing 9
mm10_v2_chr19_-_15924560_15924622	0.803706	En2	ENSMUST00000162053.1|Psat1|ENSMUSG00000024640.3|phosphoserine aminotransferase 1
mm10_v2_chrX_+_129749740_129749822	0.794151	En2	ENSMUST00000167619.2|Diap2|ENSMUSG00000034480.12|diaphanous homolog 2 (Drosophila) 	ENSMUST00000037854.8|Diap2|ENSMUSG00000034480.12|diaphanous homolog 2 (Drosophila)
mm10_v2_chr2_-_72986716_72986716	0.788534	En2	ENSMUST00000112062.1|Gm11084|ENSMUSG00000079286.1|predicted gene 11084
mm10_v2_chr3_-_79841729_79841729	0.782758	En2	ENSMUST00000168038.1|Tmem144|ENSMUSG00000027956.5|transmembrane protein 144
mm10_v2_chr4_-_24430838_24430890	0.75173	En2	ENSMUST00000183964.1|RP23-35K5.2|ENSMUSG00000099150.1|RP23-35K5.2
mm10_v2_chrX_+_136741821_136741864	0.701253	En2	ENSMUST00000089350.4|BC065397|ENSMUSG00000072960.2|cDNA sequence BC065397
mm10_v2_chr8_-_84662841_84662859	0.69667	En2	ENSMUST00000060427.4|Ier2|ENSMUSG00000053560.4|immediate early response 2
mm10_v2_chr12_-_91779129_91779144	0.680518	En2	ENSMUST00000170077.1|Ston2|ENSMUSG00000020961.8|stonin 2
mm10_v2_chr12_+_52699297_52699411	0.679051	En2	ENSMUST00000095737.3|Akap6|ENSMUSG00000061603.7|A kinase (PRKA) anchor protein 6
mm10_v2_chrM_+_11734_11757	0.669561	En2	ENSMUST00000082418.1|mt-Nd5|ENSMUSG00000064367.1|mitochondrially encoded NADH dehydrogenase 5
mm10_v2_chr2_+_152754156_152754186	0.659219	En2	ENSMUST00000010020.5|Cox4i2|ENSMUSG00000009876.7|cytochrome c oxidase subunit IV isoform 2
mm10_v2_chr1_+_110099295_110099295	0.650791	En2	ENSMUST00000134301.1|Cdh7|ENSMUSG00000026312.11|cadherin 7, type 2
mm10_v2_chrM_+_7759_7927	0.643874	En2	ENSMUST00000082407.1|mt-Atp8|ENSMUSG00000064356.3|mitochondrially encoded ATP synthase 8 	ENSMUST00000082408.1|mt-Atp6|ENSMUSG00000064357.1|mitochondrially encoded ATP synthase 6
mm10_v2_chr2_-_116067391_116067444	0.635396	En2	ENSMUST00000140185.1|2700033N17Rik|ENSMUSG00000086328.1|RIKEN cDNA 2700033N17 gene
mm10_v2_chrM_+_3906_3926	0.595166	En2	ENSMUST00000082396.1|mt-Nd2|ENSMUSG00000064345.1|mitochondrially encoded NADH dehydrogenase 2
mm10_v2_chr3_-_116253467_116253484	0.586783	En2	ENSMUST00000090473.5|Gpr88|ENSMUSG00000068696.5|G-protein coupled receptor 88
mm10_v2_chr7_+_27486910_27486960	0.565492	En2	ENSMUST00000008528.7|Sertad1|ENSMUSG00000008384.8|SERTA domain containing 1
mm10_v2_chr1_+_131527901_131527911	0.563268	En2	ENSMUST00000068613.4|Fam72a|ENSMUSG00000055184.4|family with sequence similarity 72, member A
mm10_v2_chr13_-_23574196_23574229	0.539255	En2	ENSMUST00000105106.1|Hist1h2bf|ENSMUSG00000069268.4|histone cluster 1, H2bf
mm10_v2_chr3_-_94412883_94412890	0.539201	En2	ENSMUST00000181305.1|1700040D17Rik|ENSMUSG00000097515.1|RIKEN cDNA 1700040D17 gene
mm10_v2_chr7_+_25681158_25681158	0.522602	En2	ENSMUST00000108403.3|B9d2|ENSMUSG00000063439.6|B9 protein domain 2
mm10_v2_chr5_+_135106881_135106918	0.507127	En2	ENSMUST00000005507.3|Mlxipl|ENSMUSG00000005373.7|MLX interacting protein-like
mm10_v2_chr5_+_81021583_81021593	0.50527	En2	ENSMUST00000121707.1|Lphn3|ENSMUSG00000037605.10|latrophilin 3
mm10_v2_chr19_-_56822161_56822220	0.490884	En2	ENSMUST00000118592.1|A630007B06Rik|ENSMUSG00000035173.8|RIKEN cDNA A630007B06 gene
mm10_v2_chr7_+_103550368_103550368	0.469096	En2	ENSMUST00000106888.1|Olfr613|ENSMUSG00000078624.2|olfactory receptor 613
mm10_v2_chr9_-_66514567_66514597	0.466735	En2	ENSMUST00000056890.8|Fbxl22|ENSMUSG00000050503.8|F-box and leucine-rich repeat protein 22
mm10_v2_chr18_+_56432116_56432163	0.456363	En2	ENSMUST00000070166.5|Gramd3|ENSMUSG00000001700.9|GRAM domain containing 3
mm10_v2_chrM_+_2743_2761	0.45386	En2	ENSMUST00000082392.1|mt-Nd1|ENSMUSG00000064341.1|mitochondrially encoded NADH dehydrogenase 1
mm10_v2_chr8_-_70139197_70139261	0.446029	En2	ENSMUST00000075724.7|Rfxank|ENSMUSG00000036120.9|regulatory factor X-associated ankyrin-containing protein
mm10_v2_chr12_-_84450944_84451018	0.442304	En2	ENSMUST00000085192.5|Aldh6a1|ENSMUSG00000021238.10|aldehyde dehydrogenase family 6, subfamily A1
mm10_v2_chr14_+_79515618_79515694	0.414326	En2	ENSMUST00000110835.1|Elf1|ENSMUSG00000036461.9|E74-like factor 1
mm10_v2_chr2_-_144527341_144527424	0.411353	En2	ENSMUST00000163701.1|Dzank1|ENSMUSG00000037259.9|double zinc ribbon and ankyrin repeat domains 1 	ENSMUST00000081982.5|Dzank1|ENSMUSG00000037259.9|double zinc ribbon and ankyrin repeat domains 1
mm10_v2_chr18_+_34625009_34625033	0.408432	En2	ENSMUST00000166044.1|Kif20a|ENSMUSG00000003779.9|kinesin family member 20A
mm10_v2_chr8_-_90908415_90908415	0.391793	En2	ENSMUST00000098517.1|Gm6658|ENSMUSG00000074171.1|predicted gene 6658
mm10_v2_chr2_+_118861954_118862008	0.380524	En2	ENSMUST00000028807.5|Ivd|ENSMUSG00000027332.5|isovaleryl coenzyme A dehydrogenase
mm10_v2_chr12_+_35047180_35047230	0.380461	En2	ENSMUST00000048519.9|Snx13|ENSMUSG00000020590.9|sorting nexin 13 	ENSMUST00000163677.1|Snx13|ENSMUSG00000020590.9|sorting nexin 13
mm10_v2_chrX_+_75514299_75514316	0.360596	En2	ENSMUST00000114070.3|Vbp1|ENSMUSG00000031197.5|von Hippel-Lindau binding protein 1 	ENSMUST00000033540.5|Vbp1|ENSMUSG00000031197.5|von Hippel-Lindau binding protein 1
mm10_v2_chr5_-_106696530_106696650	0.359932	En2	ENSMUST00000137285.1|Zfp644|ENSMUSG00000049606.10|zinc finger protein 644 	ENSMUST00000124263.1|Zfp644|ENSMUSG00000049606.10|zinc finger protein 644 	ENSMUST00000112695.1|Zfp644|ENSMUSG00000049606.10|zinc finger protein 644 	ENSMUST00000155495.1|Zfp644|ENSMUSG00000049606.10|zinc finger protein 644 	ENSMUST00000135108.1|Zfp644|ENSMUSG00000049606.10|zinc finger protein 644
mm10_v2_chr3_-_94436574_94436616	0.358096	En2	ENSMUST00000029787.4|Oaz3|ENSMUSG00000028141.4|ornithine decarboxylase antizyme 3
mm10_v2_chr9_-_107635330_107635353	0.355158	En2	ENSMUST00000055704.6|Gnai2|ENSMUSG00000032562.8|guanine nucleotide binding protein (G protein), alpha inhibiting 2
mm10_v2_chr5_-_106696819_106696839	0.346703	En2	ENSMUST00000127434.1|Zfp644|ENSMUSG00000049606.10|zinc finger protein 644 	ENSMUST00000112696.1|Zfp644|ENSMUSG00000049606.10|zinc finger protein 644 	ENSMUST00000112698.1|Zfp644|ENSMUSG00000049606.10|zinc finger protein 644
mm10_v2_chr14_+_53324632_53324632	0.337115	En2	ENSMUST00000178100.1|Trav7n-6|ENSMUSG00000095415.1|T cell receptor alpha variable 7N-6
mm10_v2_chr9_+_45138437_45138462	0.333144	En2	ENSMUST00000060125.5|Scn4b|ENSMUSG00000046480.5|sodium channel, type IV, beta
mm10_v2_chr18_+_34624621_34624629	0.330928	En2	ENSMUST00000167161.1|Kif20a|ENSMUSG00000003779.9|kinesin family member 20A
mm10_v2_chr1_+_66468364_66468435	0.330696	En2	ENSMUST00000061620.9|Unc80|ENSMUSG00000055567.10|unc-80 homolog (C. elegans)
mm10_v2_chrM_+_9870_9885	0.325795	En2	ENSMUST00000084013.1|mt-Nd4l|ENSMUSG00000065947.3|mitochondrially encoded NADH dehydrogenase 4L
mm10_v2_chr18_+_42511496_42511521	0.321644	En2	ENSMUST00000025375.7|Tcerg1|ENSMUSG00000024498.9|transcription elongation regulator 1 (CA150)
mm10_v2_chr18_+_82914632_82914664	0.318888	En2	ENSMUST00000071233.6|Zfp516|ENSMUSG00000058881.6|zinc finger protein 516
mm10_v2_chr6_-_85451248_85451283	0.314544	En2	ENSMUST00000113770.1|Pradc1|ENSMUSG00000030008.3|protease-associated domain containing 1 	ENSMUST00000032080.2|Pradc1|ENSMUSG00000030008.3|protease-associated domain containing 1
mm10_v2_chr11_-_86993682_86993707	0.311634	En2	ENSMUST00000018571.4|Ypel2|ENSMUSG00000018427.7|yippee-like 2 (Drosophila)
mm10_v2_chr17_+_45734506_45734630	0.307315	En2	ENSMUST00000180558.1|F630040K05Rik|ENSMUSG00000097727.1|RIKEN cDNA F630040K05 gene
mm10_v2_chr11_-_109611417_109611432	0.304	En2	ENSMUST00000103060.3|Wipi1|ENSMUSG00000041895.9|WD repeat domain, phosphoinositide interacting 1 	ENSMUST00000047186.3|Wipi1|ENSMUSG00000041895.9|WD repeat domain, phosphoinositide interacting 1 	ENSMUST00000106689.1|Wipi1|ENSMUSG00000041895.9|WD repeat domain, phosphoinositide interacting 1
mm10_v2_chr5_+_88583527_88583590	0.297522	En2	ENSMUST00000031229.6|Rufy3|ENSMUSG00000029291.7|RUN and FYVE domain containing 3
mm10_v2_chr9_-_71163224_71163293	0.292736	En2	ENSMUST00000074465.2|Aqp9|ENSMUSG00000032204.7|aquaporin 9
mm10_v2_chr1_+_132298606_132298631	0.289348	En2	ENSMUST00000046071.4|Klhdc8a|ENSMUSG00000042115.4|kelch domain containing 8A
mm10_v2_chr15_+_80255184_80255263	0.277537	En2	ENSMUST00000109605.3|Atf4|ENSMUSG00000042406.7|activating transcription factor 4
mm10_v2_chr8_-_107403197_107403213	0.268326	En2	ENSMUST00000003947.8|Nqo1|ENSMUSG00000003849.8|NAD(P)H dehydrogenase, quinone 1
mm10_v2_chr2_+_144527718_144527773	0.263051	En2	ENSMUST00000028914.2|Polr3f|ENSMUSG00000027427.7|polymerase (RNA) III (DNA directed) polypeptide F 	ENSMUST00000110017.2|Polr3f|ENSMUSG00000027427.7|polymerase (RNA) III (DNA directed) polypeptide F
mm10_v2_chr9_+_113930934_113930987	0.25931	En2	ENSMUST00000084885.5|Ubp1|ENSMUSG00000009741.8|upstream binding protein 1 	ENSMUST00000009885.7|Ubp1|ENSMUSG00000009741.8|upstream binding protein 1
mm10_v2_chr3_+_61364507_61364633	0.259298	En2	ENSMUST00000049064.2|Rap2b|ENSMUSG00000036894.2|RAP2B, member of RAS oncogene family
mm10_v2_chr12_+_72441852_72441866	0.259112	En2	ENSMUST00000162159.1|Lrrc9|ENSMUSG00000021090.9|leucine rich repeat containing 9
mm10_v2_chr18_-_88927447_88927481	0.24056	En2	ENSMUST00000147313.1|Socs6|ENSMUSG00000056153.8|suppressor of cytokine signaling 6
mm10_v2_chr3_+_134236483_134236500	0.23744	En2	ENSMUST00000181904.1|Cxxc4|ENSMUSG00000044365.10|CXXC finger 4 	ENSMUST00000053048.9|Cxxc4|ENSMUSG00000044365.10|CXXC finger 4
mm10_v2_chr19_-_28967794_28967852	0.236534	En2	ENSMUST00000162110.1|4430402I18Rik|ENSMUSG00000064202.9|RIKEN cDNA 4430402I18 gene
mm10_v2_chr13_+_5861489_5861501	0.225257	En2	ENSMUST00000000080.6|Klf6|ENSMUSG00000000078.6|Kruppel-like factor 6
mm10_v2_chr3_+_108653931_108653964	0.214958	En2	ENSMUST00000029483.8|Clcc1|ENSMUSG00000027884.10|chloride channel CLIC-like 1 	ENSMUST00000124384.1|Clcc1|ENSMUSG00000027884.10|chloride channel CLIC-like 1
mm10_v2_chr2_+_71389239_71389278	0.211008	En2	ENSMUST00000028408.2|Hat1|ENSMUSG00000027018.5|histone aminotransferase 1
mm10_v2_chr12_+_72441933_72441970	0.210204	En2	ENSMUST00000161284.1|Lrrc9|ENSMUSG00000021090.9|leucine rich repeat containing 9
mm10_v2_chr6_-_71632897_71632947	0.182361	En2	ENSMUST00000065509.4|Kdm3a|ENSMUSG00000053470.7|lysine (K)-specific demethylase 3A
mm10_v2_chr2_-_173276144_173276189	0.170959	En2	ENSMUST00000139306.1|Pmepa1|ENSMUSG00000038400.9|prostate transmembrane protein, androgen induced 1
mm10_v2_chr7_-_4778141_4778144	0.165501	En2	ENSMUST00000094892.5|Il11|ENSMUSG00000004371.8|interleukin 11
mm10_v2_chr13_+_44121167_44121322	0.158279	En2	ENSMUST00000163056.1|Gm5083|ENSMUSG00000089815.1|predicted gene 5083 	ENSMUST00000159595.1|Gm5083|ENSMUSG00000089815.1|predicted gene 5083
mm10_v2_chr7_+_101896340_101896431	0.15626	En2	ENSMUST00000035395.7|Anapc15|ENSMUSG00000030649.11|anaphase prompoting complex C subunit 15 	ENSMUST00000106973.1|Anapc15|ENSMUSG00000030649.11|anaphase prompoting complex C subunit 15 	ENSMUST00000144207.1|Anapc15|ENSMUSG00000030649.11|anaphase prompoting complex C subunit 15
mm10_v2_chr5_+_138187485_138187521	0.150437	En2	ENSMUST00000110934.2|Cnpy4|ENSMUSG00000036968.9|canopy 4 homolog (zebrafish)
mm10_v2_chr12_+_102128718_102128739	0.136948	En2	ENSMUST00000159329.1|Slc24a4|ENSMUSG00000041771.7|solute carrier family 24 (sodium/potassium/calcium exchanger), member 4
mm10_v2_chr4_-_14621805_14621819	0.134143	En2	ENSMUST00000042221.7|Slc26a7|ENSMUSG00000040569.7|solute carrier family 26, member 7
mm10_v2_chr11_+_69059750_69059809	0.132671	En2	ENSMUST00000051888.2|2310047M10Rik|ENSMUSG00000045176.2|RIKEN cDNA 2310047M10 gene
mm10_v2_chr6_-_71632651_71632694	0.127324	En2	ENSMUST00000167220.1|Kdm3a|ENSMUSG00000053470.7|lysine (K)-specific demethylase 3A
mm10_v2_chrM_+_9452_9468	0.124509	En2	ENSMUST00000082411.1|mt-Nd3|ENSMUSG00000064360.1|mitochondrially encoded NADH dehydrogenase 3
mm10_v2_chr7_-_30559600_30559659	0.122749	En2	ENSMUST00000043975.4|Lin37|ENSMUSG00000036845.6|lin-37 homolog (C. elegans) 	ENSMUST00000156241.1|Lin37|ENSMUSG00000036845.6|lin-37 homolog (C. elegans)
mm10_v2_chr11_-_70687917_70687981	0.121628	En2	ENSMUST00000108545.2|Camta2|ENSMUSG00000040712.10|calmodulin binding transcription activator 2 	ENSMUST00000120261.1|Camta2|ENSMUSG00000040712.10|calmodulin binding transcription activator 2 	ENSMUST00000036299.7|Camta2|ENSMUSG00000040712.10|calmodulin binding transcription activator 2 	ENSMUST00000119120.1|Camta2|ENSMUSG00000040712.10|calmodulin binding transcription activator 2 	ENSMUST00000100933.3|Camta2|ENSMUSG00000040712.10|calmodulin binding transcription activator 2
mm10_v2_chr17_-_35697971_35698001	0.11498	En2	ENSMUST00000146472.1|Ddr1|ENSMUSG00000003534.11|discoidin domain receptor family, member 1
mm10_v2_chr13_-_23710714_23710854	0.107962	En2	ENSMUST00000091707.6|Hfe|ENSMUSG00000006611.8|hemochromatosis 	ENSMUST00000006787.7|Hfe|ENSMUSG00000006611.8|hemochromatosis 	ENSMUST00000091706.6|Hfe|ENSMUSG00000006611.8|hemochromatosis
mm10_v2_chr6_+_4755327_4755357	0.106655	En2	ENSMUST00000176551.1|Peg10|ENSMUSG00000092035.2|paternally expressed 10
mm10_v2_chr15_-_38300693_38300715	0.106272	En2	ENSMUST00000074043.5|Klf10|ENSMUSG00000037465.9|Kruppel-like factor 10
mm10_v2_chr8_+_4238733_4238767	0.106185	En2	ENSMUST00000110998.2|Map2k7|ENSMUSG00000002948.12|mitogen-activated protein kinase kinase 7 	ENSMUST00000062686.4|Map2k7|ENSMUSG00000002948.12|mitogen-activated protein kinase kinase 7
mm10_v2_chr6_+_125145235_125145251	0.104143	En2	ENSMUST00000119527.1|Iffo1|ENSMUSG00000038271.11|intermediate filament family orphan 1 	ENSMUST00000088276.6|Iffo1|ENSMUSG00000038271.11|intermediate filament family orphan 1 	ENSMUST00000051171.7|Iffo1|ENSMUSG00000038271.11|intermediate filament family orphan 1 	ENSMUST00000117675.1|Iffo1|ENSMUSG00000038271.11|intermediate filament family orphan 1
mm10_v2_chr14_+_67716262_67716359	0.097106	En2	ENSMUST00000150768.1|Kctd9|ENSMUSG00000034327.11|potassium channel tetramerisation domain containing 9
mm10_v2_chr15_+_100334929_100334929	0.0952006	En2	ENSMUST00000075420.4|Mettl7a3|ENSMUSG00000058057.4|methyltransferase like 7A3
mm10_v2_chr11_-_20332689_20332774	0.0850036	En2	ENSMUST00000109594.1|Slc1a4|ENSMUSG00000020142.6|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4
mm10_v2_chr11_+_102285161_102285251	0.0837706	En2	ENSMUST00000156326.1|Tmub2|ENSMUSG00000034757.9|transmembrane and ubiquitin-like domain containing 2
mm10_v2_chr17_-_29007925_29007962	0.0829686	En2	ENSMUST00000009138.5|Stk38|ENSMUSG00000024006.10|serine/threonine kinase 38 	ENSMUST00000119274.1|Stk38|ENSMUSG00000024006.10|serine/threonine kinase 38
mm10_v2_chr19_-_6942406_6942450	0.0804964	En2	ENSMUST00000099782.3|Gpr137|ENSMUSG00000024958.6|G protein-coupled receptor 137
mm10_v2_chr15_+_100353149_100353200	0.0804081	En2	ENSMUST00000075675.5|AB099516|ENSMUSG00000093789.1|cDNA sequence AB099516 	ENSMUST00000088142.5|Mettl7a2|ENSMUSG00000056487.8|methyltransferase like 7A2 	ENSMUST00000176287.1|Mettl7a2|ENSMUSG00000056487.8|methyltransferase like 7A2
mm10_v2_chr7_+_64501687_64501706	0.0795572	En2	ENSMUST00000032732.8|Apba2|ENSMUSG00000030519.8|amyloid beta (A4) precursor protein-binding, family A, member 2
mm10_v2_chr11_-_20332654_20332688	0.0712825	En2	ENSMUST00000004634.6|Slc1a4|ENSMUSG00000020142.6|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4
mm10_v2_chr7_-_30559828_30559842	0.070942	En2	ENSMUST00000108164.1|Lin37|ENSMUSG00000036845.6|lin-37 homolog (C. elegans)
mm10_v2_chr4_+_138775735_138775784	0.070189	En2	ENSMUST00000030528.2|Pla2g2d|ENSMUSG00000041202.6|phospholipase A2, group IID
mm10_v2_chrX_-_157415286_157415318	0.0470291	En2	ENSMUST00000079945.4|Phex|ENSMUSG00000057457.5|phosphate regulating gene with homologies to endopeptidases on the X chromosome (hypophosphatemia, vitamin D resistant rickets) 	ENSMUST00000138396.1|Phex|ENSMUSG00000057457.5|phosphate regulating gene with homologies to endopeptidases on the X chromosome (hypophosphatemia, vitamin D resistant rickets)
mm10_v2_chr3_-_55055038_55055055	0.043906	En2	ENSMUST00000029368.2|Ccna1|ENSMUSG00000027793.2|cyclin A1
mm10_v2_chr3_+_94413244_94413318	0.0343972	En2	ENSMUST00000166032.1|Tdrkh|ENSMUSG00000041912.6|tudor and KH domain containing protein 	ENSMUST00000045245.5|Tdrkh|ENSMUSG00000041912.6|tudor and KH domain containing protein
mm10_v2_chr19_+_6046576_6046662	0.0251162	En2	ENSMUST00000138532.1|Syvn1|ENSMUSG00000024807.11|synovial apoptosis inhibitor 1, synoviolin 	ENSMUST00000129081.1|Syvn1|ENSMUSG00000024807.11|synovial apoptosis inhibitor 1, synoviolin 	ENSMUST00000156550.1|Syvn1|ENSMUSG00000024807.11|synovial apoptosis inhibitor 1, synoviolin
mm10_v2_chr11_+_69095217_69095289	0.022687	En2	ENSMUST00000101004.2|Per1|ENSMUSG00000020893.11|period circadian clock 1
mm10_v2_chr3_-_141982224_141982264	0.0217107	En2	ENSMUST00000029948.8|Bmpr1b|ENSMUSG00000052430.9|bone morphogenetic protein receptor, type 1B
mm10_v2_chr1_-_79440039_79440090	0.0103764	En2	ENSMUST00000049972.4|Scg2|ENSMUSG00000050711.6|secretogranin II
mm10_v2_chr19_+_3851797_3851811	0.00388659	En2	ENSMUST00000072055.6|Chka|ENSMUSG00000024843.9|choline kinase alpha
mm10_v2_chr3_-_146682410_146682522	0.00283453	En2	ENSMUST00000124931.1|Samd13|ENSMUSG00000048652.6|sterile alpha motif domain containing 13 	ENSMUST00000147113.1|Samd13|ENSMUSG00000048652.6|sterile alpha motif domain containing 13
