mm10_v2_chr4_-_143299498_143299564	11.7789	Hoxa1	ENSMUST00000030317.7|Pdpn|ENSMUSG00000028583.8|podoplanin
mm10_v2_chr9_+_15239045_15239155	8.13033	Hoxa1	ENSMUST00000034413.6|Vstm5|ENSMUSG00000031937.6|V-set and transmembrane domain containing 5
mm10_v2_chr14_-_103844173_103844198	7.49021	Hoxa1	ENSMUST00000022718.3|Ednrb|ENSMUSG00000022122.8|endothelin receptor type B
mm10_v2_chr14_+_70077375_70077445	6.28435	Hoxa1	ENSMUST00000035908.1|Egr3|ENSMUSG00000033730.3|early growth response 3
mm10_v2_chr7_+_73391160_73391296	5.91016	Hoxa1	ENSMUST00000128471.1|Rgma|ENSMUSG00000070509.9|RGM domain family, member A
mm10_v2_chr2_+_163225363_163225469	5.73675	Hoxa1	ENSMUST00000099110.3|Tox2|ENSMUSG00000074607.5|TOX high mobility group box family member 2 	ENSMUST00000165937.1|Tox2|ENSMUSG00000074607.5|TOX high mobility group box family member 2
mm10_v2_chr4_-_143299463_143299482	4.58383	Hoxa1	ENSMUST00000119654.1|Pdpn|ENSMUSG00000028583.8|podoplanin
mm10_v2_chr2_+_152962485_152962510	4.46708	Hoxa1	ENSMUST00000099197.2|Ttll9|ENSMUSG00000074673.9|tubulin tyrosine ligase-like family, member 9 	ENSMUST00000103155.3|Ttll9|ENSMUSG00000074673.9|tubulin tyrosine ligase-like family, member 9
mm10_v2_chr8_-_11312731_11312826	3.45766	Hoxa1	ENSMUST00000033898.9|Col4a1|ENSMUSG00000031502.9|collagen, type IV, alpha 1
mm10_v2_chr15_-_95528702_95528777	3.39529	Hoxa1	ENSMUST00000166170.1|Nell2|ENSMUSG00000022454.10|NEL-like 2
mm10_v2_chr4_-_106799779_106799846	3.30224	Hoxa1	ENSMUST00000145061.1|Acot11|ENSMUSG00000034853.10|acyl-CoA thioesterase 11 	ENSMUST00000102762.3|Acot11|ENSMUSG00000034853.10|acyl-CoA thioesterase 11
mm10_v2_chr13_-_12340723_12340760	3.19893	Hoxa1	ENSMUST00000168193.1|Actn2|ENSMUSG00000052374.8|actinin alpha 2 	ENSMUST00000110616.1|Actn2|ENSMUSG00000052374.8|actinin alpha 2 	ENSMUST00000064204.7|Actn2|ENSMUSG00000052374.8|actinin alpha 2
mm10_v2_chr10_+_79988584_79988683	3.12809	Hoxa1	ENSMUST00000004784.4|Cnn2|ENSMUSG00000004665.4|calponin 2 	ENSMUST00000105374.1|Cnn2|ENSMUSG00000004665.4|calponin 2
mm10_v2_chr15_+_74516196_74516219	3.02143	Hoxa1	ENSMUST00000042035.9|Bai1|ENSMUSG00000034730.10|brain-specific angiogenesis inhibitor 1
mm10_v2_chr13_-_60177357_60177373	2.9681	Hoxa1	ENSMUST00000065086.4|Gas1|ENSMUSG00000052957.7|growth arrest specific 1
mm10_v2_chr10_+_94576254_94576270	2.5816	Hoxa1	ENSMUST00000117929.1|Tmcc3|ENSMUSG00000020023.11|transmembrane and coiled coil domains 3
mm10_v2_chr8_-_117673682_117673701	2.16655	Hoxa1	ENSMUST00000173522.1|Sdr42e1|ENSMUSG00000034308.7|short chain dehydrogenase/reductase family 42E, member 1 	ENSMUST00000174450.1|Sdr42e1|ENSMUSG00000034308.7|short chain dehydrogenase/reductase family 42E, member 1
mm10_v2_chr16_+_38902305_38902316	2.1188	Hoxa1	ENSMUST00000023478.7|Igsf11|ENSMUSG00000022790.7|immunoglobulin superfamily, member 11
mm10_v2_chr6_-_52012476_52012551	2.07277	Hoxa1	ENSMUST00000078214.5|Skap2|ENSMUSG00000059182.5|src family associated phosphoprotein 2
mm10_v2_chr3_+_68572245_68572392	1.965	Hoxa1	ENSMUST00000170788.2|Schip1|ENSMUSG00000027777.9|schwannomin interacting protein 1
mm10_v2_chr10_+_81628702_81628719	1.9511	Hoxa1	ENSMUST00000129622.1|Ankrd24|ENSMUSG00000054708.11|ankyrin repeat domain 24
mm10_v2_chr18_+_4994600_4994623	1.91307	Hoxa1	ENSMUST00000140448.1|Svil|ENSMUSG00000024236.11|supervillin
mm10_v2_chr5_+_27261916_27261980	1.90008	Hoxa1	ENSMUST00000101471.3|Dpp6|ENSMUSG00000061576.9|dipeptidylpeptidase 6
mm10_v2_chr3_-_110143937_110144011	1.87121	Hoxa1	ENSMUST00000051253.3|Ntng1|ENSMUSG00000050836.3|netrin G1
mm10_v2_chr12_+_53248677_53248677	1.75685	Hoxa1	ENSMUST00000101432.2|Npas3|ENSMUSG00000021010.7|neuronal PAS domain protein 3
mm10_v2_chr13_+_72628802_72628825	1.66181	Hoxa1	ENSMUST00000074372.4|Irx2|ENSMUSG00000001504.9|Iroquois related homeobox 2 (Drosophila)
mm10_v2_chr2_-_152951688_152951700	1.48752	Hoxa1	ENSMUST00000109811.3|Dusp15|ENSMUSG00000042662.10|dual specificity phosphatase-like 15
mm10_v2_chr3_+_98013503_98013547	1.43515	Hoxa1	ENSMUST00000079812.6|Notch2|ENSMUSG00000027878.10|notch 2
mm10_v2_chr17_+_70522083_70522145	1.42241	Hoxa1	ENSMUST00000148486.1|Dlgap1|ENSMUSG00000003279.10|discs, large (Drosophila) homolog-associated protein 1 	ENSMUST00000133717.1|Dlgap1|ENSMUSG00000003279.10|discs, large (Drosophila) homolog-associated protein 1
mm10_v2_chrX_+_110814390_110814413	1.39051	Hoxa1	ENSMUST00000078229.3|Pou3f4|ENSMUSG00000056854.3|POU domain, class 3, transcription factor 4
mm10_v2_chr13_+_31806627_31806650	1.3725	Hoxa1	ENSMUST00000062292.2|Foxc1|ENSMUSG00000050295.2|forkhead box C1
mm10_v2_chr9_-_21312255_21312333	1.3246	Hoxa1	ENSMUST00000115433.3|Ap1m2|ENSMUSG00000003309.7|adaptor protein complex AP-1, mu 2 subunit 	ENSMUST00000003397.7|Ap1m2|ENSMUSG00000003309.7|adaptor protein complex AP-1, mu 2 subunit
mm10_v2_chr17_+_70522149_70522169	1.30443	Hoxa1	ENSMUST00000140728.1|Dlgap1|ENSMUSG00000003279.10|discs, large (Drosophila) homolog-associated protein 1
mm10_v2_chr14_-_69503316_69503362	1.28237	Hoxa1	ENSMUST00000179116.2|Gm21464|ENSMUSG00000093954.2|predicted gene, 21464
mm10_v2_chr11_-_20332654_20332688	1.25638	Hoxa1	ENSMUST00000004634.6|Slc1a4|ENSMUSG00000020142.6|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4
mm10_v2_chr17_-_25081138_25081201	1.24481	Hoxa1	ENSMUST00000024984.6|Tmem204|ENSMUSG00000024168.7|transmembrane protein 204
mm10_v2_chr6_-_21851914_21852183	1.22511	Hoxa1	ENSMUST00000134635.1|Tspan12|ENSMUSG00000029669.8|tetraspanin 12 	ENSMUST00000123116.1|Tspan12|ENSMUSG00000029669.8|tetraspanin 12 	ENSMUST00000120965.1|Tspan12|ENSMUSG00000029669.8|tetraspanin 12
mm10_v2_chr6_-_136875794_136875811	1.09903	Hoxa1	ENSMUST00000032342.1|Mgp|ENSMUSG00000030218.1|matrix Gla protein
mm10_v2_chr14_+_56575603_56575633	1.09542	Hoxa1	ENSMUST00000161553.1|Parp4|ENSMUSG00000054509.7|poly (ADP-ribose) polymerase family, member 4
mm10_v2_chr1_+_153665274_153665325	0.931294	Hoxa1	ENSMUST00000152114.1|Rgs8|ENSMUSG00000042671.6|regulator of G-protein signaling 8 	ENSMUST00000111812.1|Rgs8|ENSMUSG00000042671.6|regulator of G-protein signaling 8
mm10_v2_chr2_+_158375638_158375721	0.872943	Hoxa1	ENSMUST00000109488.1|Snhg11|ENSMUSG00000044349.9|small nucleolar RNA host gene 11
mm10_v2_chr9_-_4796218_4796267	0.791825	Hoxa1	ENSMUST00000027020.6|Gria4|ENSMUSG00000025892.9|glutamate receptor, ionotropic, AMPA4 (alpha 4) 	ENSMUST00000063508.7|Gria4|ENSMUSG00000025892.9|glutamate receptor, ionotropic, AMPA4 (alpha 4) 	ENSMUST00000163309.1|Gria4|ENSMUSG00000025892.9|glutamate receptor, ionotropic, AMPA4 (alpha 4)
mm10_v2_chr11_+_103774150_103774193	0.789383	Hoxa1	ENSMUST00000000127.5|Wnt3|ENSMUSG00000000125.5|wingless-related MMTV integration site 3
mm10_v2_chr12_-_80260356_80260371	0.744336	Hoxa1	ENSMUST00000021554.8|Actn1|ENSMUSG00000015143.8|actinin, alpha 1
mm10_v2_chr2_-_26246707_26246707	0.734195	Hoxa1	ENSMUST00000166349.1|C030048H21Rik|ENSMUSG00000090340.1|RIKEN cDNA C030048H21 gene
mm10_v2_chr10_+_75037291_75037332	0.73101	Hoxa1	ENSMUST00000139384.1|Rab36|ENSMUSG00000020175.7|RAB36, member RAS oncogene family
mm10_v2_chr13_+_72628831_72628971	0.691567	Hoxa1	ENSMUST00000169028.1|Irx2|ENSMUSG00000001504.9|Iroquois related homeobox 2 (Drosophila)
mm10_v2_chr1_+_10993452_10993478	0.67659	Hoxa1	ENSMUST00000027056.5|Prex2|ENSMUSG00000048960.7|phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 2
mm10_v2_chr15_+_98167806_98167873	0.671016	Hoxa1	ENSMUST00000031914.4|AI836003|ENSMUSG00000029875.4|expressed sequence AI836003
mm10_v2_chr14_-_69284982_69285112	0.639094	Hoxa1	ENSMUST00000183882.1|Slc25a37|ENSMUSG00000034248.7|solute carrier family 25, member 37 	ENSMUST00000037064.4|Slc25a37|ENSMUSG00000034248.7|solute carrier family 25, member 37
mm10_v2_chr7_+_144838590_144838614	0.627547	Hoxa1	ENSMUST00000105898.1|Fgf3|ENSMUSG00000031074.8|fibroblast growth factor 3
mm10_v2_chr15_-_53346118_53346169	0.597253	Hoxa1	ENSMUST00000077273.2|Ext1|ENSMUSG00000061731.3|exostoses (multiple) 1
mm10_v2_chr19_-_41743665_41743706	0.55111	Hoxa1	ENSMUST00000025993.3|Slit1|ENSMUSG00000025020.5|slit homolog 1 (Drosophila)
mm10_v2_chr10_+_14523062_14523065	0.54659	Hoxa1	ENSMUST00000096020.5|Gm10335|ENSMUSG00000071532.5|predicted gene 10335
mm10_v2_chr16_-_18876522_18876570	0.502745	Hoxa1	ENSMUST00000119273.1|Mrpl40|ENSMUSG00000022706.9|mitochondrial ribosomal protein L40
mm10_v2_chr10_+_26078255_26078255	0.490457	Hoxa1	ENSMUST00000041011.3|Gm9767|ENSMUSG00000039098.3|predicted gene 9767
mm10_v2_chr4_-_108406676_108406745	0.473688	Hoxa1	ENSMUST00000184609.1|Gpx7|ENSMUSG00000028597.11|glutathione peroxidase 7
mm10_v2_chr4_-_35845204_35845204	0.470924	Hoxa1	ENSMUST00000164772.1|Lingo2|ENSMUSG00000045083.8|leucine rich repeat and Ig domain containing 2 	ENSMUST00000065173.2|Lingo2|ENSMUSG00000045083.8|leucine rich repeat and Ig domain containing 2
mm10_v2_chr8_+_95825353_95825354	0.469916	Hoxa1	ENSMUST00000074053.4|Gm10094|ENSMUSG00000061104.4|predicted gene 10094
mm10_v2_chr17_+_55445375_55445389	0.467773	Hoxa1	ENSMUST00000133899.1|St6gal2|ENSMUSG00000024172.4|beta galactoside alpha 2,6 sialyltransferase 2 	ENSMUST00000086878.3|St6gal2|ENSMUSG00000024172.4|beta galactoside alpha 2,6 sialyltransferase 2
mm10_v2_chr18_-_56562215_56562254	0.457629	Hoxa1	ENSMUST00000170309.1|Aldh7a1|ENSMUSG00000053644.7|aldehyde dehydrogenase family 7, member A1
mm10_v2_chr18_-_56562261_56562328	0.446433	Hoxa1	ENSMUST00000066208.6|Aldh7a1|ENSMUSG00000053644.7|aldehyde dehydrogenase family 7, member A1 	ENSMUST00000172734.1|Aldh7a1|ENSMUSG00000053644.7|aldehyde dehydrogenase family 7, member A1
mm10_v2_chr18_-_56562187_56562209	0.431951	Hoxa1	ENSMUST00000171844.2|Aldh7a1|ENSMUSG00000053644.7|aldehyde dehydrogenase family 7, member A1
mm10_v2_chr5_-_137684665_137684729	0.419406	Hoxa1	ENSMUST00000100544.4|Agfg2|ENSMUSG00000029722.9|ArfGAP with FG repeats 2 	ENSMUST00000031736.9|Agfg2|ENSMUSG00000029722.9|ArfGAP with FG repeats 2 	ENSMUST00000151839.1|Agfg2|ENSMUSG00000029722.9|ArfGAP with FG repeats 2
mm10_v2_chr1_-_45503282_45503282	0.414251	Hoxa1	ENSMUST00000086430.4|Col5a2|ENSMUSG00000026042.10|collagen, type V, alpha 2
mm10_v2_chr9_+_65890237_65890343	0.404517	Hoxa1	ENSMUST00000045802.6|2810417H13Rik|ENSMUSG00000040204.6|RIKEN cDNA 2810417H13 gene
mm10_v2_chr6_-_88446491_88446539	0.375457	Hoxa1	ENSMUST00000165242.1|Eefsec|ENSMUSG00000033216.7|eukaryotic elongation factor, selenocysteine-tRNA-specific
mm10_v2_chr3_-_88762244_88762384	0.367306	Hoxa1	ENSMUST00000183267.1|Syt11|ENSMUSG00000068923.8|synaptotagmin XI
mm10_v2_chr16_+_18877037_18877241	0.324327	Hoxa1	ENSMUST00000120532.1|Hira|ENSMUSG00000022702.9|histone cell cycle regulation defective homolog A (S. cerevisiae) 	ENSMUST00000004222.7|Hira|ENSMUSG00000022702.9|histone cell cycle regulation defective homolog A (S. cerevisiae)
mm10_v2_chr10_-_63421739_63421739	0.316353	Hoxa1	ENSMUST00000054760.4|Gm7075|ENSMUSG00000048185.4|predicted gene 7075
mm10_v2_chr18_+_56562443_56562593	0.309249	Hoxa1	ENSMUST00000130163.1|Phax|ENSMUSG00000008301.5|phosphorylated adaptor for RNA export 	ENSMUST00000132628.1|Phax|ENSMUSG00000008301.5|phosphorylated adaptor for RNA export
mm10_v2_chr17_-_28622419_28622473	0.306271	Hoxa1	ENSMUST00000114767.1|Srpk1|ENSMUSG00000004865.9|serine/arginine-rich protein specific kinase 1
mm10_v2_chr5_+_137030275_137030295	0.301416	Hoxa1	ENSMUST00000041543.8|Vgf|ENSMUSG00000037428.8|VGF nerve growth factor inducible
mm10_v2_chr1_+_89454769_89454885	0.293863	Hoxa1	ENSMUST00000027521.8|Agap1|ENSMUSG00000055013.8|ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 	ENSMUST00000074945.5|Agap1|ENSMUSG00000055013.8|ArfGAP with GTPase domain, ankyrin repeat and PH domain 1
mm10_v2_chr16_-_18876655_18876767	0.286957	Hoxa1	ENSMUST00000023391.8|Mrpl40|ENSMUSG00000022706.9|mitochondrial ribosomal protein L40
mm10_v2_chrX_-_150812932_150813154	0.214302	Hoxa1	ENSMUST00000131241.1|Maged2|ENSMUSG00000025268.9|melanoma antigen, family D, 2 	ENSMUST00000147152.1|Maged2|ENSMUSG00000025268.9|melanoma antigen, family D, 2 	ENSMUST00000143843.1|Maged2|ENSMUSG00000025268.9|melanoma antigen, family D, 2
mm10_v2_chr8_-_67515606_67515606	0.206685	Hoxa1	ENSMUST00000032981.5|Gm9755|ENSMUSG00000030735.5|predicted pseudogene 9755
mm10_v2_chr3_-_58525867_58525873	0.200609	Hoxa1	ENSMUST00000029385.7|Serp1|ENSMUSG00000027808.7|stress-associated endoplasmic reticulum protein 1
mm10_v2_chr5_+_42067960_42067960	0.17841	Hoxa1	ENSMUST00000087332.4|Gm16223|ENSMUSG00000067285.4|predicted gene 16223
mm10_v2_chr9_+_110344185_110344204	0.170149	Hoxa1	ENSMUST00000142100.1|Scap|ENSMUSG00000032485.8|SREBF chaperone
mm10_v2_chr11_-_116189542_116189575	0.139676	Hoxa1	ENSMUST00000148601.1|Acox1|ENSMUSG00000020777.10|acyl-Coenzyme A oxidase 1, palmitoyl
mm10_v2_chr2_+_36230426_36230491	0.0996194	Hoxa1	ENSMUST00000062069.5|Ptgs1|ENSMUSG00000047250.7|prostaglandin-endoperoxide synthase 1
mm10_v2_chr10_-_78352469_78352515	0.0891585	Hoxa1	ENSMUST00000138035.1|Agpat3|ENSMUSG00000001211.8|1-acylglycerol-3-phosphate O-acyltransferase 3
mm10_v2_chr7_+_119690026_119690026	0.0889571	Hoxa1	ENSMUST00000047045.8|Acsm4|ENSMUSG00000047026.8|acyl-CoA synthetase medium-chain family member 4
mm10_v2_chr2_+_112261926_112261951	0.0708958	Hoxa1	ENSMUST00000028553.3|Nop10|ENSMUSG00000027133.3|NOP10 ribonucleoprotein
mm10_v2_chr3_+_58525821_58525821	0.0622805	Hoxa1	ENSMUST00000029387.8|Eif2a|ENSMUSG00000027810.8|eukaryotic translation initiation factor 2A
mm10_v2_chrX_-_134161928_134161928	0.0590368	Hoxa1	ENSMUST00000033611.4|Xkrx|ENSMUSG00000031258.4|X Kell blood group precursor related X linked
mm10_v2_chr7_-_30534180_30534180	0.0540177	Hoxa1	ENSMUST00000044338.4|Arhgap33|ENSMUSG00000036882.6|Rho GTPase activating protein 33
mm10_v2_chr5_-_135573036_135573051	0.0537462	Hoxa1	ENSMUST00000004936.6|Ccl24|ENSMUSG00000004814.7|chemokine (C-C motif) ligand 24
mm10_v2_chr5_-_143732273_143732316	0.0519525	Hoxa1	ENSMUST00000053287.5|Usp42|ENSMUSG00000051306.7|ubiquitin specific peptidase 42
mm10_v2_chr7_-_127708886_127708933	0.0474865	Hoxa1	ENSMUST00000061468.8|Bcl7c|ENSMUSG00000030814.11|B cell CLL/lymphoma 7C
mm10_v2_chr11_-_40755201_40755311	0.0357363	Hoxa1	ENSMUST00000020576.7|Ccng1|ENSMUSG00000020326.7|cyclin G1
mm10_v2_chr9_+_113930934_113930987	0.0177187	Hoxa1	ENSMUST00000084885.5|Ubp1|ENSMUSG00000009741.8|upstream binding protein 1 	ENSMUST00000009885.7|Ubp1|ENSMUSG00000009741.8|upstream binding protein 1
mm10_v2_chr9_+_58129476_58129501	0.00186153	Hoxa1	ENSMUST00000133287.1|Stra6|ENSMUSG00000032327.8|stimulated by retinoic acid gene 6
