mm10_v2_chr2_-_156392829_156392993	5.53314	Hoxd1	ENSMUST00000088578.2|2900097C17Rik|ENSMUSG00000067833.2|RIKEN cDNA 2900097C17 gene
mm10_v2_chrX_-_143933089_143933142	4.32234	Hoxd1	ENSMUST00000087313.3|Dcx|ENSMUSG00000031285.8|doublecortin
mm10_v2_chrX_-_143933204_143933311	4.07303	Hoxd1	ENSMUST00000112851.1|Dcx|ENSMUSG00000031285.8|doublecortin 	ENSMUST00000112856.2|Dcx|ENSMUSG00000031285.8|doublecortin 	ENSMUST00000033642.3|Dcx|ENSMUSG00000031285.8|doublecortin
mm10_v2_chr10_-_110000219_110000219	3.55885	Hoxd1	ENSMUST00000032719.7|Nav3|ENSMUSG00000020181.9|neuron navigator 3
mm10_v2_chr9_-_55919605_55919605	3.26226	Hoxd1	ENSMUST00000037408.8|Scaper|ENSMUSG00000034007.9|S phase cyclin A-associated protein in the ER
mm10_v2_chr1_-_158356258_158356313	3.03944	Hoxd1	ENSMUST00000004133.8|Brinp2|ENSMUSG00000004031.8|bone morphogenic protein/retinoic acid inducible neural-specific 2
mm10_v2_chrM_+_10167_10167	2.99497	Hoxd1	ENSMUST00000082414.1|mt-Nd4|ENSMUSG00000064363.1|mitochondrially encoded NADH dehydrogenase 4
mm10_v2_chr5_+_107497762_107497802	2.92234	Hoxd1	ENSMUST00000152474.1|A830010M20Rik|ENSMUSG00000044060.11|RIKEN cDNA A830010M20 gene 	ENSMUST00000060553.7|A830010M20Rik|ENSMUSG00000044060.11|RIKEN cDNA A830010M20 gene
mm10_v2_chr2_-_20943413_20943424	2.89668	Hoxd1	ENSMUST00000140230.1|Arhgap21|ENSMUSG00000036591.9|Rho GTPase activating protein 21
mm10_v2_chr3_-_85722474_85722474	2.85941	Hoxd1	ENSMUST00000119077.1|Fam160a1|ENSMUSG00000051000.11|family with sequence similarity 160, member A1
mm10_v2_chr13_+_83732438_83732566	2.78267	Hoxd1	ENSMUST00000182701.1|C130071C03Rik|ENSMUSG00000050334.6|RIKEN cDNA C130071C03 gene
mm10_v2_chr12_+_52699297_52699411	2.66404	Hoxd1	ENSMUST00000095737.3|Akap6|ENSMUSG00000061603.7|A kinase (PRKA) anchor protein 6
mm10_v2_chr17_-_45659312_45659335	2.54426	Hoxd1	ENSMUST00000120717.1|Capn11|ENSMUSG00000058626.10|calpain 11
mm10_v2_chr2_+_116067213_116067250	2.52782	Hoxd1	ENSMUST00000152412.1|G630016G05Rik|ENSMUSG00000086308.1|RIKEN cDNA G630016G05 gene
mm10_v2_chr5_+_107497718_107497759	2.52645	Hoxd1	ENSMUST00000112671.2|A830010M20Rik|ENSMUSG00000044060.11|RIKEN cDNA A830010M20 gene
mm10_v2_chr2_+_170731807_170731920	2.50857	Hoxd1	ENSMUST00000029075.4|Dok5|ENSMUSG00000027560.4|docking protein 5
mm10_v2_chr12_-_24493656_24493656	2.47472	Hoxd1	ENSMUST00000073088.2|Gm16372|ENSMUSG00000057160.2|predicted pseudogene 16372
mm10_v2_chr2_+_37516618_37516634	2.40108	Hoxd1	ENSMUST00000065441.6|Gpr21|ENSMUSG00000053164.6|G protein-coupled receptor 21
mm10_v2_chr2_-_116067391_116067444	2.18904	Hoxd1	ENSMUST00000140185.1|2700033N17Rik|ENSMUSG00000086328.1|RIKEN cDNA 2700033N17 gene
mm10_v2_chr16_+_11406618_11406675	2.17165	Hoxd1	ENSMUST00000122168.1|Snx29|ENSMUSG00000071669.8|sorting nexin 29
mm10_v2_chr5_-_62766153_62766246	2.12874	Hoxd1	ENSMUST00000076623.4|Arap2|ENSMUSG00000037999.9|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2
mm10_v2_chr9_-_15301555_15301607	2.11258	Hoxd1	ENSMUST00000034414.8|4931406C07Rik|ENSMUSG00000031938.8|RIKEN cDNA 4931406C07 gene
mm10_v2_chr2_+_3424123_3424207	2.09032	Hoxd1	ENSMUST00000061852.5|Dclre1c|ENSMUSG00000026648.12|DNA cross-link repair 1C, PSO2 homolog (S. cerevisiae) 	ENSMUST00000100463.3|Dclre1c|ENSMUSG00000026648.12|DNA cross-link repair 1C, PSO2 homolog (S. cerevisiae) 	ENSMUST00000102988.3|Dclre1c|ENSMUSG00000026648.12|DNA cross-link repair 1C, PSO2 homolog (S. cerevisiae) 	ENSMUST00000115066.1|Dclre1c|ENSMUSG00000026648.12|DNA cross-link repair 1C, PSO2 homolog (S. cerevisiae)
mm10_v2_chr15_+_82256023_82256130	2.06366	Hoxd1	ENSMUST00000143238.1|1500009C09Rik|ENSMUSG00000068099.4|RIKEN cDNA 1500009C09 gene
mm10_v2_chrM_+_9870_9885	2.06281	Hoxd1	ENSMUST00000084013.1|mt-Nd4l|ENSMUSG00000065947.3|mitochondrially encoded NADH dehydrogenase 4L
mm10_v2_chr17_-_36032682_36032855	2.00078	Hoxd1	ENSMUST00000102678.4|H2-T23|ENSMUSG00000067212.8|histocompatibility 2, T region locus 23
mm10_v2_chr13_-_105054895_105054930	1.96309	Hoxd1	ENSMUST00000063551.5|Rgs7bp|ENSMUSG00000021719.8|regulator of G-protein signalling 7 binding protein
mm10_v2_chr18_+_37355271_37355271	1.93427	Hoxd1	ENSMUST00000051163.1|Pcdhb8|ENSMUSG00000045876.3|protocadherin beta 8
mm10_v2_chr16_-_45724600_45724619	1.92596	Hoxd1	ENSMUST00000096057.4|Tagln3|ENSMUSG00000022658.10|transgelin 3
mm10_v2_chr7_-_140154712_140154877	1.86755	Hoxd1	ENSMUST00000059241.7|Sprn|ENSMUSG00000045733.7|shadow of prion protein
mm10_v2_chr13_+_42866247_42866301	1.79373	Hoxd1	ENSMUST00000131942.1|Phactr1|ENSMUSG00000054728.10|phosphatase and actin regulator 1
mm10_v2_chr18_+_31609512_31609512	1.78725	Hoxd1	ENSMUST00000164667.1|B930094E09Rik|ENSMUSG00000092124.1|RIKEN cDNA B930094E09 gene
mm10_v2_chr1_+_65186727_65186750	1.75723	Hoxd1	ENSMUST00000097707.4|Pikfyve|ENSMUSG00000025949.9|phosphoinositide kinase, FYVE finger containing 	ENSMUST00000081154.7|Pikfyve|ENSMUSG00000025949.9|phosphoinositide kinase, FYVE finger containing
mm10_v2_chr7_+_29816061_29816153	1.73945	Hoxd1	ENSMUST00000032796.6|Zfp790|ENSMUSG00000011427.9|zinc finger protein 790 	ENSMUST00000178162.1|Zfp790|ENSMUSG00000011427.9|zinc finger protein 790
mm10_v2_chr2_+_150323702_150323702	1.73649	Hoxd1	ENSMUST00000133235.2|Gm10130|ENSMUSG00000095315.1|predicted gene 10130
mm10_v2_chr1_-_24612700_24612700	1.70374	Hoxd1	ENSMUST00000088336.1|Gm10222|ENSMUSG00000067736.1|predicted gene 10222
mm10_v2_chrX_+_170009892_170009892	1.70236	Hoxd1	ENSMUST00000180251.1|Gm21887|ENSMUSG00000095562.1|predicted gene, 21887
mm10_v2_chr8_-_41041828_41041866	1.68652	Hoxd1	ENSMUST00000051379.7|Mtus1|ENSMUSG00000045636.10|mitochondrial tumor suppressor 1
mm10_v2_chr17_+_88440711_88440741	1.67619	Hoxd1	ENSMUST00000112238.2|Foxn2|ENSMUSG00000034998.12|forkhead box N2 	ENSMUST00000155640.1|Foxn2|ENSMUSG00000034998.12|forkhead box N2
mm10_v2_chr5_-_106926245_106926321	1.64242	Hoxd1	ENSMUST00000117588.1|Hfm1|ENSMUSG00000043410.10|HFM1, ATP-dependent DNA helicase homolog (S. cerevisiae)
mm10_v2_chr16_-_55934845_55934868	1.59278	Hoxd1	ENSMUST00000121129.1|Cep97|ENSMUSG00000022604.12|centrosomal protein 97 	ENSMUST00000023270.7|Cep97|ENSMUSG00000022604.12|centrosomal protein 97
mm10_v2_chr1_-_33814516_33814576	1.53746	Hoxd1	ENSMUST00000044455.5|Zfp451|ENSMUSG00000042197.7|zinc finger protein 451 	ENSMUST00000115167.1|Zfp451|ENSMUSG00000042197.7|zinc finger protein 451
mm10_v2_chr8_-_54724474_54724504	1.51222	Hoxd1	ENSMUST00000175915.1|Wdr17|ENSMUSG00000039375.10|WD repeat domain 17
mm10_v2_chr2_-_45117349_45117395	1.51118	Hoxd1	ENSMUST00000176438.2|Zeb2|ENSMUSG00000026872.10|zinc finger E-box binding homeobox 2
mm10_v2_chr9_-_85749308_85749356	1.47332	Hoxd1	ENSMUST00000039213.8|Ibtk|ENSMUSG00000035941.9|inhibitor of Bruton agammaglobulinemia tyrosine kinase
mm10_v2_chr9_-_107872403_107872422	1.4612	Hoxd1	ENSMUST00000183035.1|Rbm6|ENSMUSG00000032582.8|RNA binding motif protein 6
mm10_v2_chr2_+_65620829_65620857	1.45616	Hoxd1	ENSMUST00000028377.7|Scn2a1|ENSMUSG00000075318.6|sodium channel, voltage-gated, type II, alpha 1
mm10_v2_chr5_+_134932351_134932406	1.45165	Hoxd1	ENSMUST00000047196.7|Wbscr27|ENSMUSG00000040557.8|Williams Beuren syndrome chromosome region 27 (human) 	ENSMUST00000111221.2|Wbscr27|ENSMUSG00000040557.8|Williams Beuren syndrome chromosome region 27 (human) 	ENSMUST00000111219.1|Wbscr27|ENSMUSG00000040557.8|Williams Beuren syndrome chromosome region 27 (human) 	ENSMUST00000068617.5|Wbscr27|ENSMUSG00000040557.8|Williams Beuren syndrome chromosome region 27 (human) 	ENSMUST00000111218.1|Wbscr27|ENSMUSG00000040557.8|Williams Beuren syndrome chromosome region 27 (human) 	ENSMUST00000136246.1|Wbscr27|ENSMUSG00000040557.8|Williams Beuren syndrome chromosome region 27 (human)
mm10_v2_chr6_-_57535422_57535447	1.3961	Hoxd1	ENSMUST00000042766.3|Ppm1k|ENSMUSG00000037826.3|protein phosphatase 1K (PP2C domain containing)
mm10_v2_chr5_-_118244861_118245116	1.38986	Hoxd1	ENSMUST00000117177.1|Rnft2|ENSMUSG00000032850.10|ring finger protein, transmembrane 2 	ENSMUST00000133372.1|Rnft2|ENSMUSG00000032850.10|ring finger protein, transmembrane 2 	ENSMUST00000154786.1|Rnft2|ENSMUSG00000032850.10|ring finger protein, transmembrane 2 	ENSMUST00000121369.1|Rnft2|ENSMUSG00000032850.10|ring finger protein, transmembrane 2
mm10_v2_chr16_-_55934797_55934840	1.35414	Hoxd1	ENSMUST00000122280.1|Cep97|ENSMUSG00000022604.12|centrosomal protein 97 	ENSMUST00000121703.2|Cep97|ENSMUSG00000022604.12|centrosomal protein 97
mm10_v2_chr17_-_32822200_32822200	1.33872	Hoxd1	ENSMUST00000179695.1|Zfp799|ENSMUSG00000095253.1|zinc finger protein 799
mm10_v2_chr12_-_98577940_98578046	1.33439	Hoxd1	ENSMUST00000110113.1|Kcnk10|ENSMUSG00000033854.9|potassium channel, subfamily K, member 10
mm10_v2_chr2_+_69897255_69897303	1.26614	Hoxd1	ENSMUST00000131553.1|Ubr3|ENSMUSG00000044308.11|ubiquitin protein ligase E3 component n-recognin 3
mm10_v2_chr2_+_69897220_69897247	1.25883	Hoxd1	ENSMUST00000055758.9|Ubr3|ENSMUSG00000044308.11|ubiquitin protein ligase E3 component n-recognin 3 	ENSMUST00000112251.2|Ubr3|ENSMUSG00000044308.11|ubiquitin protein ligase E3 component n-recognin 3
mm10_v2_chr2_+_121956651_121956664	1.18789	Hoxd1	ENSMUST00000110574.1|Ctdspl2|ENSMUSG00000033411.10|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2
mm10_v2_chr2_-_177267036_177267036	1.1818	Hoxd1	ENSMUST00000108963.1|Gm14409|ENSMUSG00000078869.2|predicted gene 14409
mm10_v2_chr6_+_72097561_72097630	1.16543	Hoxd1	ENSMUST00000069994.4|St3gal5|ENSMUSG00000056091.6|ST3 beta-galactoside alpha-2,3-sialyltransferase 5 	ENSMUST00000114112.1|St3gal5|ENSMUSG00000056091.6|ST3 beta-galactoside alpha-2,3-sialyltransferase 5
mm10_v2_chr16_-_16600533_16600576	1.1599	Hoxd1	ENSMUST00000159542.1|Fgd4|ENSMUSG00000022788.10|FYVE, RhoGEF and PH domain containing 4
mm10_v2_chr8_+_113635550_113635597	1.1466	Hoxd1	ENSMUST00000179926.1|Mon1b|ENSMUSG00000078908.3|MON1 homolog b (yeast)
mm10_v2_chr8_+_113635787_113635842	1.14612	Hoxd1	ENSMUST00000035777.8|Mon1b|ENSMUSG00000078908.3|MON1 homolog b (yeast)
mm10_v2_chr5_+_29195983_29196032	1.09425	Hoxd1	ENSMUST00000160888.1|Rnf32|ENSMUSG00000029130.6|ring finger protein 32 	ENSMUST00000159272.1|Rnf32|ENSMUSG00000029130.6|ring finger protein 32 	ENSMUST00000001247.5|Rnf32|ENSMUSG00000029130.6|ring finger protein 32 	ENSMUST00000161398.1|Rnf32|ENSMUSG00000029130.6|ring finger protein 32 	ENSMUST00000160246.1|Rnf32|ENSMUSG00000029130.6|ring finger protein 32
mm10_v2_chrX_-_75578188_75578247	1.09278	Hoxd1	ENSMUST00000033545.5|Rab39b|ENSMUSG00000031202.5|RAB39B, member RAS oncogene family
mm10_v2_chr5_-_70842617_70842617	1.08489	Hoxd1	ENSMUST00000031119.1|Gabrg1|ENSMUSG00000001260.6|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 1
mm10_v2_chr5_-_123012874_123012880	1.07639	Hoxd1	ENSMUST00000172729.1|Kdm2b|ENSMUSG00000029475.11|lysine (K)-specific demethylase 2B
mm10_v2_chr11_-_107337556_107337637	1.07213	Hoxd1	ENSMUST00000040380.6|Pitpnc1|ENSMUSG00000040430.12|phosphatidylinositol transfer protein, cytoplasmic 1
mm10_v2_chr10_+_103367748_103367836	1.06559	Hoxd1	ENSMUST00000074204.4|Slc6a15|ENSMUSG00000019894.7|solute carrier family 6 (neurotransmitter transporter), member 15 	ENSMUST00000179636.1|Slc6a15|ENSMUSG00000019894.7|solute carrier family 6 (neurotransmitter transporter), member 15
mm10_v2_chr2_+_121956411_121956480	1.06215	Hoxd1	ENSMUST00000110578.1|Ctdspl2|ENSMUSG00000033411.10|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2
mm10_v2_chr10_+_90071095_90071117	1.05709	Hoxd1	ENSMUST00000183109.1|Anks1b|ENSMUSG00000058589.8|ankyrin repeat and sterile alpha motif domain containing 1B
mm10_v2_chr15_+_98092569_98092603	1.05522	Hoxd1	ENSMUST00000163507.1|Pfkm|ENSMUSG00000033065.7|phosphofructokinase, muscle
mm10_v2_chr11_-_121388186_121388267	1.03355	Hoxd1	ENSMUST00000106107.2|Rab40b|ENSMUSG00000025170.7|Rab40b, member RAS oncogene family
mm10_v2_chr13_-_67332525_67332553	1.02321	Hoxd1	ENSMUST00000168892.1|Zfp595|ENSMUSG00000057842.7|zinc finger protein 595 	ENSMUST00000109735.2|Zfp595|ENSMUSG00000057842.7|zinc finger protein 595
mm10_v2_chr3_-_116712644_116712655	1.00125	Hoxd1	ENSMUST00000029569.2|Slc35a3|ENSMUSG00000027957.7|solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member 3
mm10_v2_chr12_+_72441852_72441866	0.993579	Hoxd1	ENSMUST00000162159.1|Lrrc9|ENSMUSG00000021090.9|leucine rich repeat containing 9
mm10_v2_chrX_+_9885622_9885622	0.979977	Hoxd1	ENSMUST00000067529.2|Sytl5|ENSMUSG00000054453.5|synaptotagmin-like 5 	ENSMUST00000086165.3|Sytl5|ENSMUSG00000054453.5|synaptotagmin-like 5
mm10_v2_chr8_-_122915987_122915987	0.972088	Hoxd1	ENSMUST00000098333.4|Ankrd11|ENSMUSG00000035569.10|ankyrin repeat domain 11
mm10_v2_chr17_+_34931253_34931343	0.944186	Hoxd1	ENSMUST00000007253.5|Neu1|ENSMUSG00000007038.5|neuraminidase 1
mm10_v2_chr9_-_123851855_123851912	0.922124	Hoxd1	ENSMUST00000184082.1|Fyco1|ENSMUSG00000025241.9|FYVE and coiled-coil domain containing 1 	ENSMUST00000167595.2|Fyco1|ENSMUSG00000025241.9|FYVE and coiled-coil domain containing 1
mm10_v2_chr19_+_8802486_8802530	0.899681	Hoxd1	ENSMUST00000172175.1|Zbtb3|ENSMUSG00000071661.6|zinc finger and BTB domain containing 3
mm10_v2_chr9_-_86880647_86880659	0.862959	Hoxd1	ENSMUST00000167014.1|Snap91|ENSMUSG00000033419.9|synaptosomal-associated protein 91
mm10_v2_chr12_+_16653470_16653486	0.857593	Hoxd1	ENSMUST00000111064.1|Ntsr2|ENSMUSG00000020591.10|neurotensin receptor 2
mm10_v2_chr7_+_79273201_79273270	0.826068	Hoxd1	ENSMUST00000037315.6|Abhd2|ENSMUSG00000039202.6|abhydrolase domain containing 2
mm10_v2_chr11_+_35121126_35121224	0.809332	Hoxd1	ENSMUST00000069837.3|Slit3|ENSMUSG00000056427.4|slit homolog 3 (Drosophila)
mm10_v2_chr18_+_59062462_59062538	0.759839	Hoxd1	ENSMUST00000058633.2|A730017C20Rik|ENSMUSG00000050875.5|RIKEN cDNA A730017C20 gene 	ENSMUST00000175897.1|A730017C20Rik|ENSMUSG00000050875.5|RIKEN cDNA A730017C20 gene 	ENSMUST00000118510.1|A730017C20Rik|ENSMUSG00000050875.5|RIKEN cDNA A730017C20 gene 	ENSMUST00000175830.1|A730017C20Rik|ENSMUSG00000050875.5|RIKEN cDNA A730017C20 gene
mm10_v2_chr7_-_44929410_44929521	0.745193	Hoxd1	ENSMUST00000107857.3|Ap2a1|ENSMUSG00000060279.7|adaptor-related protein complex 2, alpha 1 subunit 	ENSMUST00000085399.6|Ap2a1|ENSMUSG00000060279.7|adaptor-related protein complex 2, alpha 1 subunit 	ENSMUST00000167930.1|Ap2a1|ENSMUSG00000060279.7|adaptor-related protein complex 2, alpha 1 subunit 	ENSMUST00000166972.1|Ap2a1|ENSMUSG00000060279.7|adaptor-related protein complex 2, alpha 1 subunit
mm10_v2_chr4_+_102570065_102570124	0.722754	Hoxd1	ENSMUST00000097950.2|Pde4b|ENSMUSG00000028525.10|phosphodiesterase 4B, cAMP specific
mm10_v2_chr11_+_116843278_116843278	0.703586	Hoxd1	ENSMUST00000106370.3|Mettl23|ENSMUSG00000090266.4|methyltransferase like 23
mm10_v2_chr9_-_105395237_105395289	0.68283	Hoxd1	ENSMUST00000140851.1|Nek11|ENSMUSG00000035032.5|NIMA (never in mitosis gene a)-related expressed kinase 11
mm10_v2_chr12_+_72441933_72441970	0.674907	Hoxd1	ENSMUST00000161284.1|Lrrc9|ENSMUSG00000021090.9|leucine rich repeat containing 9
mm10_v2_chr7_+_130774069_130774185	0.661496	Hoxd1	ENSMUST00000048453.5|Btbd16|ENSMUSG00000040298.5|BTB (POZ) domain containing 16
mm10_v2_chr16_+_52031549_52031570	0.623229	Hoxd1	ENSMUST00000114471.1|Cblb|ENSMUSG00000022637.10|Casitas B-lineage lymphoma b
mm10_v2_chr8_+_72219726_72219785	0.619185	Hoxd1	ENSMUST00000003123.8|Fam32a|ENSMUSG00000003039.8|family with sequence similarity 32, member A
mm10_v2_chr14_-_75754475_75754563	0.592243	Hoxd1	ENSMUST00000049168.7|Cog3|ENSMUSG00000034893.7|component of oligomeric golgi complex 3
mm10_v2_chr7_+_127511976_127512075	0.566261	Hoxd1	ENSMUST00000098025.4|Srcap|ENSMUSG00000053877.6|Snf2-related CREBBP activator protein
mm10_v2_chr9_+_72958785_72958850	0.56473	Hoxd1	ENSMUST00000098567.2|Dyx1c1|ENSMUSG00000092192.1|dyslexia susceptibility 1 candidate 1 homolog (human) 	ENSMUST00000034734.8|Dyx1c1|ENSMUSG00000092192.1|dyslexia susceptibility 1 candidate 1 homolog (human)
mm10_v2_chr12_-_84617326_84617466	0.555122	Hoxd1	ENSMUST00000021666.4|Abcd4|ENSMUSG00000021240.5|ATP-binding cassette, sub-family D (ALD), member 4
mm10_v2_chr18_+_12741324_12741355	0.552059	Hoxd1	ENSMUST00000115857.2|Cabyr|ENSMUSG00000024430.7|calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2) 	ENSMUST00000121018.1|Cabyr|ENSMUSG00000024430.7|calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2) 	ENSMUST00000119108.1|Cabyr|ENSMUSG00000024430.7|calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2)
mm10_v2_chr3_-_41742471_41742548	0.547651	Hoxd1	ENSMUST00000026866.8|Sclt1|ENSMUSG00000059834.6|sodium channel and clathrin linker 1
mm10_v2_chr10_-_117148474_117148510	0.546113	Hoxd1	ENSMUST00000020381.3|Frs2|ENSMUSG00000020170.3|fibroblast growth factor receptor substrate 2
mm10_v2_chr4_+_103143052_103143071	0.539717	Hoxd1	ENSMUST00000106855.1|Mier1|ENSMUSG00000028522.10|mesoderm induction early response 1 homolog (Xenopus laevis
mm10_v2_chr18_+_59062282_59062376	0.500002	Hoxd1	ENSMUST00000165666.2|A730017C20Rik|ENSMUSG00000050875.5|RIKEN cDNA A730017C20 gene
mm10_v2_chr14_+_55559993_55560006	0.49753	Hoxd1	ENSMUST00000117236.1|Dcaf11|ENSMUSG00000022214.8|DDB1 and CUL4 associated factor 11
mm10_v2_chr3_+_94837702_94837723	0.476045	Hoxd1	ENSMUST00000107266.1|Pogz|ENSMUSG00000038902.8|pogo transposable element with ZNF domain 	ENSMUST00000042402.5|Pogz|ENSMUSG00000038902.8|pogo transposable element with ZNF domain 	ENSMUST00000107269.1|Pogz|ENSMUSG00000038902.8|pogo transposable element with ZNF domain
mm10_v2_chr3_+_94837533_94837567	0.475731	Hoxd1	ENSMUST00000107270.2|Pogz|ENSMUSG00000038902.8|pogo transposable element with ZNF domain
mm10_v2_chr2_-_79908428_79908438	0.472472	Hoxd1	ENSMUST00000102652.3|Pde1a|ENSMUSG00000059173.13|phosphodiesterase 1A, calmodulin-dependent 	ENSMUST00000102651.3|Pde1a|ENSMUSG00000059173.13|phosphodiesterase 1A, calmodulin-dependent
mm10_v2_chr2_+_131491764_131491943	0.464717	Hoxd1	ENSMUST00000028806.5|Smox|ENSMUSG00000027333.12|spermine oxidase 	ENSMUST00000110179.2|Smox|ENSMUSG00000027333.12|spermine oxidase 	ENSMUST00000110189.2|Smox|ENSMUSG00000027333.12|spermine oxidase 	ENSMUST00000110182.2|Smox|ENSMUSG00000027333.12|spermine oxidase 	ENSMUST00000110183.2|Smox|ENSMUSG00000027333.12|spermine oxidase 	ENSMUST00000110186.2|Smox|ENSMUSG00000027333.12|spermine oxidase 	ENSMUST00000110188.1|Smox|ENSMUSG00000027333.12|spermine oxidase
mm10_v2_chr18_-_60273267_60273267	0.462827	Hoxd1	ENSMUST00000090260.4|Gm4841|ENSMUSG00000068606.5|predicted gene 4841
mm10_v2_chr14_+_4198185_4198185	0.437414	Hoxd1	ENSMUST00000180184.1|Gm2974|ENSMUSG00000079391.4|predicted gene 2974
mm10_v2_chr12_+_80644212_80644265	0.423684	Hoxd1	ENSMUST00000085245.5|Slc39a9|ENSMUSG00000048833.8|solute carrier family 39 (zinc transporter), member 9
mm10_v2_chr9_-_119341390_119341420	0.421629	Hoxd1	ENSMUST00000139870.1|Myd88|ENSMUSG00000032508.8|myeloid differentiation primary response gene 88
mm10_v2_chr4_+_147132038_147132038	0.409226	Hoxd1	ENSMUST00000084149.3|Gm13139|ENSMUSG00000067916.3|predicted gene 13139
mm10_v2_chr12_+_10390756_10390836	0.379308	Hoxd1	ENSMUST00000020947.5|Rdh14|ENSMUSG00000020621.5|retinol dehydrogenase 14 (all-trans and 9-cis)
mm10_v2_chr16_+_18836573_18836583	0.36253	Hoxd1	ENSMUST00000055413.6|2510002D24Rik|ENSMUSG00000071632.4|RIKEN cDNA 2510002D24 gene
mm10_v2_chr19_-_53944621_53944632	0.360631	Hoxd1	ENSMUST00000135402.2|Bbip1|ENSMUSG00000084957.2|BBSome interacting protein 1
mm10_v2_chr2_+_92375306_92375306	0.352161	Hoxd1	ENSMUST00000028650.8|Pex16|ENSMUSG00000027222.8|peroxisomal biogenesis factor 16
mm10_v2_chr8_-_105966038_105966120	0.347059	Hoxd1	ENSMUST00000116429.2|Slc12a4|ENSMUSG00000017765.10|solute carrier family 12, member 4 	ENSMUST00000034370.9|Slc12a4|ENSMUSG00000017765.10|solute carrier family 12, member 4
mm10_v2_chr12_-_87388317_87388355	0.340685	Hoxd1	ENSMUST00000021424.4|Sptlc2|ENSMUSG00000021036.4|serine palmitoyltransferase, long chain base subunit 2
mm10_v2_chr2_-_69712461_69712606	0.336138	Hoxd1	ENSMUST00000102706.3|Fastkd1|ENSMUSG00000027086.10|FAST kinase domains 1 	ENSMUST00000073152.6|Fastkd1|ENSMUSG00000027086.10|FAST kinase domains 1
mm10_v2_chr4_+_146610961_146610961	0.326984	Hoxd1	ENSMUST00000130825.1|Gm13248|ENSMUSG00000063245.5|predicted gene 13248
mm10_v2_chr17_-_32886083_32886083	0.288315	Hoxd1	ENSMUST00000178401.1|Zfp870|ENSMUSG00000095325.1|zinc finger protein 870
mm10_v2_chr10_-_112928974_112929026	0.283362	Hoxd1	ENSMUST00000099276.2|Atxn7l3b|ENSMUSG00000074748.2|ataxin 7-like 3B
mm10_v2_chr4_+_145585166_145585211	0.279146	Hoxd1	ENSMUST00000105739.1|Gm13212|ENSMUSG00000078502.4|predicted gene 13212 	ENSMUST00000119718.1|Gm13212|ENSMUSG00000078502.4|predicted gene 13212
mm10_v2_chr13_-_56895737_56895793	0.279011	Hoxd1	ENSMUST00000022023.6|Trpc7|ENSMUSG00000021541.7|transient receptor potential cation channel, subfamily C, member 7 	ENSMUST00000109871.1|Trpc7|ENSMUSG00000021541.7|transient receptor potential cation channel, subfamily C, member 7
mm10_v2_chr14_-_104522615_104522707	0.274443	Hoxd1	ENSMUST00000022716.2|Rnf219|ENSMUSG00000022120.3|ring finger protein 219
mm10_v2_chr10_+_116143881_116143903	0.263082	Hoxd1	ENSMUST00000105271.2|Ptprr|ENSMUSG00000020151.10|protein tyrosine phosphatase, receptor type, R
mm10_v2_chr19_+_41933464_41933540	0.261252	Hoxd1	ENSMUST00000026154.7|Zdhhc16|ENSMUSG00000025157.7|zinc finger, DHHC domain containing 16
mm10_v2_chr13_+_44121167_44121322	0.257962	Hoxd1	ENSMUST00000163056.1|Gm5083|ENSMUSG00000089815.1|predicted gene 5083 	ENSMUST00000159595.1|Gm5083|ENSMUSG00000089815.1|predicted gene 5083
mm10_v2_chr9_+_119341487_119341515	0.250864	Hoxd1	ENSMUST00000175743.1|Acaa1a|ENSMUSG00000036138.10|acetyl-Coenzyme A acyltransferase 1A 	ENSMUST00000176397.1|Acaa1a|ENSMUSG00000036138.10|acetyl-Coenzyme A acyltransferase 1A
mm10_v2_chr18_-_24603464_24603530	0.241512	Hoxd1	ENSMUST00000154205.1|Slc39a6|ENSMUSG00000024270.5|solute carrier family 39 (metal ion transporter), member 6
mm10_v2_chr5_-_63968867_63968905	0.207662	Hoxd1	ENSMUST00000154169.1|Rell1|ENSMUSG00000047881.8|RELT-like 1
mm10_v2_chr13_+_24801657_24801657	0.202232	Hoxd1	ENSMUST00000019276.4|BC005537|ENSMUSG00000019132.4|cDNA sequence BC005537
mm10_v2_chr19_-_32196393_32196428	0.199986	Hoxd1	ENSMUST00000151822.1|Sgms1|ENSMUSG00000040451.11|sphingomyelin synthase 1
mm10_v2_chr2_-_160619971_160619971	0.198923	Hoxd1	ENSMUST00000109473.1|Gm14221|ENSMUSG00000078956.2|predicted gene 14221
mm10_v2_chr9_+_119341294_119341363	0.192192	Hoxd1	ENSMUST00000039784.5|Acaa1a|ENSMUSG00000036138.10|acetyl-Coenzyme A acyltransferase 1A
mm10_v2_chr15_+_98571004_98571026	0.17939	Hoxd1	ENSMUST00000023728.6|4930415O20Rik|ENSMUSG00000022993.6|RIKEN cDNA 4930415O20 gene
mm10_v2_chr10_+_116018213_116018421	0.157404	Hoxd1	ENSMUST00000063470.4|Ptprr|ENSMUSG00000020151.10|protein tyrosine phosphatase, receptor type, R
mm10_v2_chr13_+_24802020_24802020	0.15549	Hoxd1	ENSMUST00000155575.1|BC005537|ENSMUSG00000019132.4|cDNA sequence BC005537
mm10_v2_chrX_+_16619698_16619758	0.143996	Hoxd1	ENSMUST00000026013.5|Maoa|ENSMUSG00000025037.6|monoamine oxidase A
mm10_v2_chr14_+_48446128_48446276	0.131107	Hoxd1	ENSMUST00000124720.1|Tmem260|ENSMUSG00000036339.11|transmembrane protein 260
mm10_v2_chr2_+_69822370_69822511	0.113977	Hoxd1	ENSMUST00000053087.3|Klhl23|ENSMUSG00000042155.3|kelch-like 23
mm10_v2_chr10_-_120112946_120112987	0.107202	Hoxd1	ENSMUST00000020449.5|Helb|ENSMUSG00000020228.5|helicase (DNA) B
mm10_v2_chr2_+_119047129_119047159	0.10429	Hoxd1	ENSMUST00000153300.1|Casc5|ENSMUSG00000027326.7|cancer susceptibility candidate 5 	ENSMUST00000028799.5|Casc5|ENSMUSG00000027326.7|cancer susceptibility candidate 5
mm10_v2_chr17_-_57031468_57031538	0.100591	Hoxd1	ENSMUST00000007814.8|Khsrp|ENSMUSG00000007670.9|KH-type splicing regulatory protein
mm10_v2_chr1_-_172027269_172027313	0.0856302	Hoxd1	ENSMUST00000027837.6|Vangl2|ENSMUSG00000026556.9|vang-like 2 (van gogh, Drosophila) 	ENSMUST00000111264.1|Vangl2|ENSMUSG00000026556.9|vang-like 2 (van gogh, Drosophila)
mm10_v2_chr11_+_87109221_87109239	0.0852087	Hoxd1	ENSMUST00000020794.5|Ska2|ENSMUSG00000020492.5|spindle and kinetochore associated complex subunit 2
mm10_v2_chr6_+_34029421_34029456	0.0753371	Hoxd1	ENSMUST00000070189.3|Lrguk|ENSMUSG00000056215.6|leucine-rich repeats and guanylate kinase domain containing 	ENSMUST00000101564.2|Lrguk|ENSMUSG00000056215.6|leucine-rich repeats and guanylate kinase domain containing
mm10_v2_chr16_+_65520503_65520548	0.0713447	Hoxd1	ENSMUST00000176330.1|Pou1f1|ENSMUSG00000004842.12|POU domain, class 1, transcription factor 1 	ENSMUST00000004964.8|Pou1f1|ENSMUSG00000004842.12|POU domain, class 1, transcription factor 1 	ENSMUST00000176038.1|Pou1f1|ENSMUSG00000004842.12|POU domain, class 1, transcription factor 1
mm10_v2_chr10_-_76110956_76110962	0.0602769	Hoxd1	ENSMUST00000120757.1|Slc5a4b|ENSMUSG00000020226.9|solute carrier family 5 (neutral amino acid transporters, system A), member 4b
mm10_v2_chr3_+_103739366_103739366	0.0501065	Hoxd1	ENSMUST00000106852.1|Gm10964|ENSMUSG00000078620.1|predicted gene 10964
mm10_v2_chr1_-_65186456_65186504	0.0475453	Hoxd1	ENSMUST00000169032.1|Idh1|ENSMUSG00000025950.10|isocitrate dehydrogenase 1 (NADP+), soluble
mm10_v2_chr4_-_147809788_147809840	0.0451918	Hoxd1	ENSMUST00000105734.3|Gm13157|ENSMUSG00000078495.4|predicted gene 13157 	ENSMUST00000176201.1|Gm20707|ENSMUSG00000093594.1|predicted gene 20707
mm10_v2_chr17_+_36837123_36837211	0.0395978	Hoxd1	ENSMUST00000179968.1|Trim26|ENSMUSG00000024457.10|tripartite motif-containing 26 	ENSMUST00000130367.1|Trim26|ENSMUSG00000024457.10|tripartite motif-containing 26 	ENSMUST00000130801.1|Trim26|ENSMUSG00000024457.10|tripartite motif-containing 26 	ENSMUST00000144182.1|Trim26|ENSMUSG00000024457.10|tripartite motif-containing 26 	ENSMUST00000123715.1|Trim26|ENSMUSG00000024457.10|tripartite motif-containing 26 	ENSMUST00000053434.8|Trim26|ENSMUSG00000024457.10|tripartite motif-containing 26
mm10_v2_chr2_-_79908389_79908403	0.0359553	Hoxd1	ENSMUST00000090756.4|Pde1a|ENSMUSG00000059173.13|phosphodiesterase 1A, calmodulin-dependent
mm10_v2_chr5_+_136987019_136987019	0.0358255	Hoxd1	ENSMUST00000004968.4|Plod3|ENSMUSG00000004846.4|procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3
mm10_v2_chr7_-_6730412_6730431	0.0250273	Hoxd1	ENSMUST00000051209.4|Peg3|ENSMUSG00000002265.9|paternally expressed 3
mm10_v2_chr1_+_161969284_161969313	0.0247789	Hoxd1	ENSMUST00000160881.1|Pigc|ENSMUSG00000026698.7|phosphatidylinositol glycan anchor biosynthesis, class C 	ENSMUST00000159648.1|Pigc|ENSMUSG00000026698.7|phosphatidylinositol glycan anchor biosynthesis, class C
