mm10_v2_chr13_-_84064772_84064808	12.3144	Hoxd11_Cdx1_Hoxc11	ENSMUST00000182477.1|Gm17750|ENSMUSG00000098087.1|predicted gene, 17750
mm10_v2_chr1_+_159737510_159737510	8.63679	Hoxd11_Cdx1_Hoxc11	ENSMUST00000111669.3|Tnr|ENSMUSG00000015829.8|tenascin R
mm10_v2_chr4_+_144893127_144893151	8.13287	Hoxd11_Cdx1_Hoxc11	ENSMUST00000142808.1|Dhrs3|ENSMUSG00000066026.8|dehydrogenase/reductase (SDR family) member 3
mm10_v2_chr17_-_91092715_91092822	6.83503	Hoxd11_Cdx1_Hoxc11	ENSMUST00000160800.2|Nrxn1|ENSMUSG00000024109.12|neurexin I 	ENSMUST00000159778.1|Nrxn1|ENSMUSG00000024109.12|neurexin I 	ENSMUST00000160844.3|Nrxn1|ENSMUSG00000024109.12|neurexin I
mm10_v2_chr17_+_3397189_3397207	6.44065	Hoxd11_Cdx1_Hoxc11	ENSMUST00000072156.6|Tiam2|ENSMUSG00000023800.8|T cell lymphoma invasion and metastasis 2
mm10_v2_chr5_-_62766153_62766246	5.32586	Hoxd11_Cdx1_Hoxc11	ENSMUST00000076623.4|Arap2|ENSMUSG00000037999.9|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2
mm10_v2_chr4_+_144892813_144892835	5.25603	Hoxd11_Cdx1_Hoxc11	ENSMUST00000105744.1|Dhrs3|ENSMUSG00000066026.8|dehydrogenase/reductase (SDR family) member 3 	ENSMUST00000171001.1|Dhrs3|ENSMUSG00000066026.8|dehydrogenase/reductase (SDR family) member 3
mm10_v2_chr15_+_81936911_81936982	4.91098	Hoxd11_Cdx1_Hoxc11	ENSMUST00000135663.1|Csdc2|ENSMUSG00000042109.7|cold shock domain containing C2, RNA binding
mm10_v2_chr15_+_81936753_81936839	4.80322	Hoxd11_Cdx1_Hoxc11	ENSMUST00000038757.7|Csdc2|ENSMUSG00000042109.7|cold shock domain containing C2, RNA binding
mm10_v2_chr4_+_144893077_144893103	4.0532	Hoxd11_Cdx1_Hoxc11	ENSMUST00000154208.1|Dhrs3|ENSMUSG00000066026.8|dehydrogenase/reductase (SDR family) member 3
mm10_v2_chr18_+_69593361_69593450	3.84004	Hoxd11_Cdx1_Hoxc11	ENSMUST00000114978.2|Tcf4|ENSMUSG00000053477.9|transcription factor 4 	ENSMUST00000114977.1|Tcf4|ENSMUSG00000053477.9|transcription factor 4
mm10_v2_chr3_+_62419668_62419668	3.61777	Hoxd11_Cdx1_Hoxc11	ENSMUST00000161057.1|Arhgef26|ENSMUSG00000036885.8|Rho guanine nucleotide exchange factor (GEF) 26
mm10_v2_chr13_-_101692624_101692647	3.41418	Hoxd11_Cdx1_Hoxc11	ENSMUST00000035532.6|Pik3r1|ENSMUSG00000041417.9|phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 1 (p85 alpha)
mm10_v2_chr6_+_80018877_80018945	3.24056	Hoxd11_Cdx1_Hoxc11	ENSMUST00000147663.1|Lrrtm4|ENSMUSG00000052581.7|leucine rich repeat transmembrane neuronal 4 	ENSMUST00000128718.1|Lrrtm4|ENSMUSG00000052581.7|leucine rich repeat transmembrane neuronal 4 	ENSMUST00000126005.1|Lrrtm4|ENSMUSG00000052581.7|leucine rich repeat transmembrane neuronal 4 	ENSMUST00000133918.1|Lrrtm4|ENSMUSG00000052581.7|leucine rich repeat transmembrane neuronal 4
mm10_v2_chr18_-_42899470_42899643	3.15757	Hoxd11_Cdx1_Hoxc11	ENSMUST00000120632.1|Ppp2r2b|ENSMUSG00000024500.12|protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), beta isoform
mm10_v2_chr6_-_13839916_13839942	2.86275	Hoxd11_Cdx1_Hoxc11	ENSMUST00000060442.7|Gpr85|ENSMUSG00000048216.7|G protein-coupled receptor 85
mm10_v2_chr1_+_19103022_19103043	2.82019	Hoxd11_Cdx1_Hoxc11	ENSMUST00000037294.7|Tfap2d|ENSMUSG00000042596.7|transcription factor AP-2, delta
mm10_v2_chr7_-_73537621_73537766	2.50011	Hoxd11_Cdx1_Hoxc11	ENSMUST00000172704.1|Chd2|ENSMUSG00000078671.4|chromodomain helicase DNA binding protein 2
mm10_v2_chr17_+_31433054_31433071	2.47044	Hoxd11_Cdx1_Hoxc11	ENSMUST00000136384.1|Pde9a|ENSMUSG00000041119.5|phosphodiesterase 9A
mm10_v2_chr3_+_108591279_108591414	2.43363	Hoxd11_Cdx1_Hoxc11	ENSMUST00000051145.8|Wdr47|ENSMUSG00000040389.9|WD repeat domain 47 	ENSMUST00000139626.1|Wdr47|ENSMUSG00000040389.9|WD repeat domain 47
mm10_v2_chr1_-_56969864_56969875	2.27955	Hoxd11_Cdx1_Hoxc11	ENSMUST00000177424.1|Satb2|ENSMUSG00000038331.9|special AT-rich sequence binding protein 2
mm10_v2_chr1_-_56969827_56969850	2.25086	Hoxd11_Cdx1_Hoxc11	ENSMUST00000176759.1|Satb2|ENSMUSG00000038331.9|special AT-rich sequence binding protein 2
mm10_v2_chr10_+_116177351_116177417	2.24591	Hoxd11_Cdx1_Hoxc11	ENSMUST00000155606.1|Ptprr|ENSMUSG00000020151.10|protein tyrosine phosphatase, receptor type, R 	ENSMUST00000128399.1|Ptprr|ENSMUSG00000020151.10|protein tyrosine phosphatase, receptor type, R
mm10_v2_chr4_-_64046925_64047015	2.10835	Hoxd11_Cdx1_Hoxc11	ENSMUST00000107377.3|Tnc|ENSMUSG00000028364.9|tenascin C
mm10_v2_chr5_-_62765618_62765656	2.098	Hoxd11_Cdx1_Hoxc11	ENSMUST00000159470.1|Arap2|ENSMUSG00000037999.9|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2
mm10_v2_chr8_+_57455898_57455923	2.09147	Hoxd11_Cdx1_Hoxc11	ENSMUST00000034023.3|Scrg1|ENSMUSG00000031610.3|scrapie responsive gene 1
mm10_v2_chr9_-_55919605_55919605	1.99431	Hoxd11_Cdx1_Hoxc11	ENSMUST00000037408.8|Scaper|ENSMUSG00000034007.9|S phase cyclin A-associated protein in the ER
mm10_v2_chr9_+_62858085_62858138	1.94592	Hoxd11_Cdx1_Hoxc11	ENSMUST00000034777.6|Calml4|ENSMUSG00000032246.7|calmodulin-like 4 	ENSMUST00000163820.1|Calml4|ENSMUSG00000032246.7|calmodulin-like 4
mm10_v2_chr2_+_32395896_32395896	1.86131	Hoxd11_Cdx1_Hoxc11	ENSMUST00000028162.3|Ptges2|ENSMUSG00000026820.3|prostaglandin E synthase 2
mm10_v2_chr7_+_25306085_25306157	1.8387	Hoxd11_Cdx1_Hoxc11	ENSMUST00000119703.1|Tmem145|ENSMUSG00000043843.10|transmembrane protein 145 	ENSMUST00000108409.1|Tmem145|ENSMUSG00000043843.10|transmembrane protein 145
mm10_v2_chr4_-_88033328_88033373	1.82677	Hoxd11_Cdx1_Hoxc11	ENSMUST00000078090.5|Mllt3|ENSMUSG00000028496.11|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3
mm10_v2_chr16_+_11405648_11405713	1.68761	Hoxd11_Cdx1_Hoxc11	ENSMUST00000096273.2|Snx29|ENSMUSG00000071669.8|sorting nexin 29
mm10_v2_chr16_+_42907563_42907684	1.65826	Hoxd11_Cdx1_Hoxc11	ENSMUST00000151244.1|Zbtb20|ENSMUSG00000022708.10|zinc finger and BTB domain containing 20 	ENSMUST00000114694.2|Zbtb20|ENSMUSG00000022708.10|zinc finger and BTB domain containing 20
mm10_v2_chr19_-_45812291_45812307	1.6306	Hoxd11_Cdx1_Hoxc11	ENSMUST00000086993.4|Kcnip2|ENSMUSG00000025221.9|Kv channel-interacting protein 2
mm10_v2_chr7_-_29906087_29906137	1.57657	Hoxd11_Cdx1_Hoxc11	ENSMUST00000053521.8|Zfp27|ENSMUSG00000062040.8|zinc finger protein 27
mm10_v2_chr4_-_154636831_154636873	1.56262	Hoxd11_Cdx1_Hoxc11	ENSMUST00000030902.6|Prdm16|ENSMUSG00000039410.10|PR domain containing 16 	ENSMUST00000105637.1|Prdm16|ENSMUSG00000039410.10|PR domain containing 16 	ENSMUST00000070313.7|Prdm16|ENSMUSG00000039410.10|PR domain containing 16 	ENSMUST00000105636.1|Prdm16|ENSMUSG00000039410.10|PR domain containing 16 	ENSMUST00000105638.2|Prdm16|ENSMUSG00000039410.10|PR domain containing 16 	ENSMUST00000097759.2|Prdm16|ENSMUSG00000039410.10|PR domain containing 16 	ENSMUST00000124771.1|Prdm16|ENSMUSG00000039410.10|PR domain containing 16
mm10_v2_chr3_+_76074270_76074270	1.51715	Hoxd11_Cdx1_Hoxc11	ENSMUST00000038364.8|Fstl5|ENSMUSG00000034098.8|follistatin-like 5
mm10_v2_chr3_+_66985680_66985692	1.49994	Hoxd11_Cdx1_Hoxc11	ENSMUST00000065047.6|Rsrc1|ENSMUSG00000034544.11|arginine/serine-rich coiled-coil 1
mm10_v2_chr16_-_4880284_4880315	1.46692	Hoxd11_Cdx1_Hoxc11	ENSMUST00000037843.6|Ubald1|ENSMUSG00000039568.6|UBA-like domain containing 1
mm10_v2_chr13_-_22035589_22035643	1.37955	Hoxd11_Cdx1_Hoxc11	ENSMUST00000091742.4|Hist1h2ah|ENSMUSG00000069302.4|histone cluster 1, H2ah
mm10_v2_chr5_-_73256555_73256636	1.33572	Hoxd11_Cdx1_Hoxc11	ENSMUST00000171179.1|Fryl|ENSMUSG00000090491.1|furry homolog-like (Drosophila) 	ENSMUST00000101127.5|Fryl|ENSMUSG00000070733.7|furry homolog-like (Drosophila)
mm10_v2_chr18_-_42899294_42899317	1.28959	Hoxd11_Cdx1_Hoxc11	ENSMUST00000117687.1|Ppp2r2b|ENSMUSG00000024500.12|protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), beta isoform
mm10_v2_chr2_-_66410064_66410134	1.26426	Hoxd11_Cdx1_Hoxc11	ENSMUST00000112366.1|Scn1a|ENSMUSG00000064329.7|sodium channel, voltage-gated, type I, alpha
mm10_v2_chr6_-_97617536_97617597	1.2572	Hoxd11_Cdx1_Hoxc11	ENSMUST00000113355.2|Frmd4b|ENSMUSG00000030064.10|FERM domain containing 4B
mm10_v2_chr1_-_72536930_72536999	1.25694	Hoxd11_Cdx1_Hoxc11	ENSMUST00000047786.5|March4|ENSMUSG00000039372.5|membrane-associated ring finger (C3HC4) 4
mm10_v2_chr2_-_45112890_45113010	1.216	Hoxd11_Cdx1_Hoxc11	ENSMUST00000076836.6|Zeb2|ENSMUSG00000026872.10|zinc finger E-box binding homeobox 2
mm10_v2_chr13_+_80883403_80883422	1.21185	Hoxd11_Cdx1_Hoxc11	ENSMUST00000099356.2|Arrdc3|ENSMUSG00000074794.3|arrestin domain containing 3
mm10_v2_chr4_+_31964081_31964263	1.19579	Hoxd11_Cdx1_Hoxc11	ENSMUST00000037607.4|Map3k7|ENSMUSG00000028284.7|mitogen-activated protein kinase kinase kinase 7 	ENSMUST00000080933.6|Map3k7|ENSMUSG00000028284.7|mitogen-activated protein kinase kinase kinase 7 	ENSMUST00000108183.1|Map3k7|ENSMUSG00000028284.7|mitogen-activated protein kinase kinase kinase 7 	ENSMUST00000108184.2|Map3k7|ENSMUSG00000028284.7|mitogen-activated protein kinase kinase kinase 7
mm10_v2_chr7_-_142661858_142661880	1.19578	Hoxd11_Cdx1_Hoxc11	ENSMUST00000145896.2|Igf2|ENSMUSG00000048583.10|insulin-like growth factor 2
mm10_v2_chr7_-_27181149_27181162	1.17161	Hoxd11_Cdx1_Hoxc11	ENSMUST00000071986.6|Mia|ENSMUSG00000089661.3|melanoma inhibitory activity 	ENSMUST00000121848.1|Mia|ENSMUSG00000089661.3|melanoma inhibitory activity
mm10_v2_chr17_-_90455872_90456026	1.14587	Hoxd11_Cdx1_Hoxc11	ENSMUST00000174337.1|Nrxn1|ENSMUSG00000024109.12|neurexin I 	ENSMUST00000172466.1|Nrxn1|ENSMUSG00000024109.12|neurexin I
mm10_v2_chrX_-_12673540_12673668	1.13832	Hoxd11_Cdx1_Hoxc11	ENSMUST00000060108.6|1810030O07Rik|ENSMUSG00000044148.6|RIKEN cDNA 1810030O07 gene
mm10_v2_chr15_+_100761741_100761797	1.10953	Hoxd11_Cdx1_Hoxc11	ENSMUST00000023776.6|Slc4a8|ENSMUSG00000023032.6|solute carrier family 4 (anion exchanger), member 8
mm10_v2_chr1_-_155099630_155099636	1.10312	Hoxd11_Cdx1_Hoxc11	ENSMUST00000055322.4|Ier5|ENSMUSG00000056708.4|immediate early response 5
mm10_v2_chr10_-_25200110_25200178	1.0894	Hoxd11_Cdx1_Hoxc11	ENSMUST00000100012.2|Akap7|ENSMUSG00000039166.9|A kinase (PRKA) anchor protein 7
mm10_v2_chr7_-_134232005_134232054	1.08269	Hoxd11_Cdx1_Hoxc11	ENSMUST00000134504.1|Adam12|ENSMUSG00000054555.5|a disintegrin and metallopeptidase domain 12 (meltrin alpha)
mm10_v2_chr2_-_31845925_31846005	1.05627	Hoxd11_Cdx1_Hoxc11	ENSMUST00000028188.7|Fibcd1|ENSMUSG00000026841.7|fibrinogen C domain containing 1
mm10_v2_chr11_-_109298066_109298079	1.02311	Hoxd11_Cdx1_Hoxc11	ENSMUST00000106706.1|Rgs9|ENSMUSG00000020599.7|regulator of G-protein signaling 9
mm10_v2_chr11_+_29463735_29463888	1.02274	Hoxd11_Cdx1_Hoxc11	ENSMUST00000155854.1|Ccdc88a|ENSMUSG00000032740.10|coiled coil domain containing 88A
mm10_v2_chr11_-_109298121_109298142	1.00977	Hoxd11_Cdx1_Hoxc11	ENSMUST00000020920.3|Rgs9|ENSMUSG00000020599.7|regulator of G-protein signaling 9
mm10_v2_chr11_-_79504078_79504089	0.986256	Hoxd11_Cdx1_Hoxc11	ENSMUST00000164465.2|Omg|ENSMUSG00000049612.10|oligodendrocyte myelin glycoprotein
mm10_v2_chr4_-_11981265_11981265	0.96419	Hoxd11_Cdx1_Hoxc11	ENSMUST00000098260.2|Gm10604|ENSMUSG00000073995.2|predicted gene 10604
mm10_v2_chr9_-_44799179_44799307	0.963132	Hoxd11_Cdx1_Hoxc11	ENSMUST00000114705.1|Tmem25|ENSMUSG00000002032.10|transmembrane protein 25 	ENSMUST00000002100.7|Tmem25|ENSMUSG00000002032.10|transmembrane protein 25
mm10_v2_chr9_-_42124276_42124333	0.947529	Hoxd11_Cdx1_Hoxc11	ENSMUST00000060989.8|Sorl1|ENSMUSG00000049313.8|sortilin-related receptor, LDLR class A repeats-containing
mm10_v2_chr6_-_144209558_144209647	0.947524	Hoxd11_Cdx1_Hoxc11	ENSMUST00000111749.1|Sox5|ENSMUSG00000041540.10|SRY-box containing gene 5 	ENSMUST00000170367.2|Sox5|ENSMUSG00000041540.10|SRY-box containing gene 5
mm10_v2_chr10_+_69787431_69787458	0.945674	Hoxd11_Cdx1_Hoxc11	ENSMUST00000183240.1|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial
mm10_v2_chr5_+_107497718_107497759	0.932502	Hoxd11_Cdx1_Hoxc11	ENSMUST00000112671.2|A830010M20Rik|ENSMUSG00000044060.11|RIKEN cDNA A830010M20 gene
mm10_v2_chr18_+_36939178_36939318	0.909442	Hoxd11_Cdx1_Hoxc11	ENSMUST00000115662.2|Pcdha2|ENSMUSG00000007440.8|protocadherin alpha 2
mm10_v2_chr6_-_144209448_144209469	0.901687	Hoxd11_Cdx1_Hoxc11	ENSMUST00000077160.5|Sox5|ENSMUSG00000041540.10|SRY-box containing gene 5
mm10_v2_chr8_-_105943382_105943407	0.898234	Hoxd11_Cdx1_Hoxc11	ENSMUST00000038896.7|Lcat|ENSMUSG00000035237.7|lecithin cholesterol acyltransferase
mm10_v2_chr2_+_178141920_178141939	0.897013	Hoxd11_Cdx1_Hoxc11	ENSMUST00000103066.3|Phactr3|ENSMUSG00000027525.11|phosphatase and actin regulator 3
mm10_v2_chr5_-_24030649_24030707	0.874933	Hoxd11_Cdx1_Hoxc11	ENSMUST00000030849.6|Fam126a|ENSMUSG00000028995.8|family with sequence similarity 126, member A
mm10_v2_chr16_-_32877723_32877766	0.867104	Hoxd11_Cdx1_Hoxc11	ENSMUST00000119810.1|1700021K19Rik|ENSMUSG00000035629.11|RIKEN cDNA 1700021K19 gene
mm10_v2_chr2_-_24048857_24048868	0.857804	Hoxd11_Cdx1_Hoxc11	ENSMUST00000114497.1|Hnmt|ENSMUSG00000026986.8|histamine N-methyltransferase
mm10_v2_chr6_+_125215551_125215591	0.854621	Hoxd11_Cdx1_Hoxc11	ENSMUST00000032487.7|Vamp1|ENSMUSG00000030337.10|vesicle-associated membrane protein 1 	ENSMUST00000100942.2|Vamp1|ENSMUSG00000030337.10|vesicle-associated membrane protein 1 	ENSMUST00000063588.8|Vamp1|ENSMUSG00000030337.10|vesicle-associated membrane protein 1
mm10_v2_chr1_+_81077274_81077327	0.833863	Hoxd11_Cdx1_Hoxc11	ENSMUST00000068275.5|Nyap2|ENSMUSG00000054976.8|neuronal tyrosine-phophorylated phosphoinositide 3-kinase adaptor 2 	ENSMUST00000113494.2|Nyap2|ENSMUSG00000054976.8|neuronal tyrosine-phophorylated phosphoinositide 3-kinase adaptor 2
mm10_v2_chr19_+_60755947_60755987	0.830837	Hoxd11_Cdx1_Hoxc11	ENSMUST00000088237.4|Nanos1|ENSMUSG00000072437.3|nanos homolog 1 (Drosophila)
mm10_v2_chr12_+_55836365_55836408	0.804789	Hoxd11_Cdx1_Hoxc11	ENSMUST00000059250.6|Brms1l|ENSMUSG00000012076.7|breast cancer metastasis-suppressor 1-like
mm10_v2_chr14_+_76504185_76504249	0.801968	Hoxd11_Cdx1_Hoxc11	ENSMUST00000177207.1|Tsc22d1|ENSMUSG00000022010.13|TSC22 domain family, member 1
mm10_v2_chr1_+_180109192_180109265	0.800923	Hoxd11_Cdx1_Hoxc11	ENSMUST00000143176.1|Cdc42bpa|ENSMUSG00000026490.11|CDC42 binding protein kinase alpha 	ENSMUST00000135056.1|Cdc42bpa|ENSMUSG00000026490.11|CDC42 binding protein kinase alpha
mm10_v2_chr18_-_35498856_35498925	0.798911	Hoxd11_Cdx1_Hoxc11	ENSMUST00000025215.8|Sil1|ENSMUSG00000024357.9|endoplasmic reticulum chaperone SIL1 homolog (S. cerevisiae)
mm10_v2_chr6_+_8259288_8259312	0.7953	Hoxd11_Cdx1_Hoxc11	ENSMUST00000159335.1|Gm16039|ENSMUSG00000089862.2|predicted gene 16039
mm10_v2_chr5_+_107497762_107497802	0.791472	Hoxd11_Cdx1_Hoxc11	ENSMUST00000152474.1|A830010M20Rik|ENSMUSG00000044060.11|RIKEN cDNA A830010M20 gene 	ENSMUST00000060553.7|A830010M20Rik|ENSMUSG00000044060.11|RIKEN cDNA A830010M20 gene
mm10_v2_chr5_+_150259922_150259936	0.790461	Hoxd11_Cdx1_Hoxc11	ENSMUST00000087204.5|Fry|ENSMUSG00000056602.8|furry homolog (Drosophila)
mm10_v2_chr6_+_125552948_125552980	0.744658	Hoxd11_Cdx1_Hoxc11	ENSMUST00000112254.1|Vwf|ENSMUSG00000001930.11|Von Willebrand factor homolog 	ENSMUST00000112253.1|Vwf|ENSMUSG00000001930.11|Von Willebrand factor homolog 	ENSMUST00000001995.7|Vwf|ENSMUSG00000001930.11|Von Willebrand factor homolog
mm10_v2_chr7_-_134232125_134232146	0.726259	Hoxd11_Cdx1_Hoxc11	ENSMUST00000127524.1|Adam12|ENSMUSG00000054555.5|a disintegrin and metallopeptidase domain 12 (meltrin alpha)
mm10_v2_chr16_-_35769356_35769384	0.720917	Hoxd11_Cdx1_Hoxc11	ENSMUST00000023554.8|Dirc2|ENSMUSG00000022848.8|disrupted in renal carcinoma 2 (human)
mm10_v2_chr6_-_144209471_144209487	0.720777	Hoxd11_Cdx1_Hoxc11	ENSMUST00000038815.7|Sox5|ENSMUSG00000041540.10|SRY-box containing gene 5
mm10_v2_chr11_-_110251736_110251776	0.715773	Hoxd11_Cdx1_Hoxc11	ENSMUST00000044003.7|Abca6|ENSMUSG00000044749.7|ATP-binding cassette, sub-family A (ABC1), member 6
mm10_v2_chr13_-_23622502_23622563	0.691357	Hoxd11_Cdx1_Hoxc11	ENSMUST00000062045.2|Hist1h1e|ENSMUSG00000051627.2|histone cluster 1, H1e
mm10_v2_chr17_-_35074485_35074500	0.676453	Hoxd11_Cdx1_Hoxc11	ENSMUST00000007259.3|Ly6g6d|ENSMUSG00000073413.3|lymphocyte antigen 6 complex, locus G6D
mm10_v2_chr1_+_81077204_81077252	0.64209	Hoxd11_Cdx1_Hoxc11	ENSMUST00000123720.1|Nyap2|ENSMUSG00000054976.8|neuronal tyrosine-phophorylated phosphoinositide 3-kinase adaptor 2
mm10_v2_chr3_-_49757257_49757316	0.641474	Hoxd11_Cdx1_Hoxc11	ENSMUST00000035931.7|Pcdh18|ENSMUSG00000037892.8|protocadherin 18
mm10_v2_chr1_-_176807124_176807124	0.641338	Hoxd11_Cdx1_Hoxc11	ENSMUST00000057037.7|Cep170|ENSMUSG00000057335.6|centrosomal protein 170
mm10_v2_chr18_-_37020679_37020679	0.635231	Hoxd11_Cdx1_Hoxc11	ENSMUST00000097612.2|Gm10545|ENSMUSG00000073594.2|predicted gene 10545
mm10_v2_chr11_-_109298090_109298118	0.630437	Hoxd11_Cdx1_Hoxc11	ENSMUST00000106704.2|Rgs9|ENSMUSG00000020599.7|regulator of G-protein signaling 9
mm10_v2_chr2_-_33086366_33086447	0.619065	Hoxd11_Cdx1_Hoxc11	ENSMUST00000049618.2|Garnl3|ENSMUSG00000038860.9|GTPase activating RANGAP domain-like 3
mm10_v2_chr2_-_114013619_114013638	0.617615	Hoxd11_Cdx1_Hoxc11	ENSMUST00000090275.4|Gjd2|ENSMUSG00000068615.4|gap junction protein, delta 2
mm10_v2_chr16_-_91728599_91728637	0.596049	Hoxd11_Cdx1_Hoxc11	ENSMUST00000122254.1|Cryzl1|ENSMUSG00000058240.7|crystallin, zeta (quinone reductase)-like 1
mm10_v2_chr5_+_63812447_63812538	0.56355	Hoxd11_Cdx1_Hoxc11	ENSMUST00000081747.3|0610040J01Rik|ENSMUSG00000060512.3|RIKEN cDNA 0610040J01 gene
mm10_v2_chr10_+_123264076_123264125	0.549816	Hoxd11_Cdx1_Hoxc11	ENSMUST00000050756.7|Fam19a2|ENSMUSG00000044071.7|family with sequence similarity 19, member A2
mm10_v2_chr2_+_29965560_29965717	0.549719	Hoxd11_Cdx1_Hoxc11	ENSMUST00000113717.1|Sptan1|ENSMUSG00000057738.7|spectrin alpha, non-erythrocytic 1 	ENSMUST00000113719.2|Sptan1|ENSMUSG00000057738.7|spectrin alpha, non-erythrocytic 1 	ENSMUST00000100225.2|Sptan1|ENSMUSG00000057738.7|spectrin alpha, non-erythrocytic 1 	ENSMUST00000113741.1|Sptan1|ENSMUSG00000057738.7|spectrin alpha, non-erythrocytic 1 	ENSMUST00000095083.4|Sptan1|ENSMUSG00000057738.7|spectrin alpha, non-erythrocytic 1 	ENSMUST00000046257.7|Sptan1|ENSMUSG00000057738.7|spectrin alpha, non-erythrocytic 1
mm10_v2_chr16_-_91728701_91728802	0.546506	Hoxd11_Cdx1_Hoxc11	ENSMUST00000114023.2|Cryzl1|ENSMUSG00000058240.7|crystallin, zeta (quinone reductase)-like 1 	ENSMUST00000117644.1|Cryzl1|ENSMUSG00000058240.7|crystallin, zeta (quinone reductase)-like 1
mm10_v2_chr1_-_152625212_152625220	0.543954	Hoxd11_Cdx1_Hoxc11	ENSMUST00000027760.7|Rgl1|ENSMUSG00000026482.7|ral guanine nucleotide dissociation stimulator,-like 1
mm10_v2_chr3_+_103575275_103575286	0.539424	Hoxd11_Cdx1_Hoxc11	ENSMUST00000090697.4|Syt6|ENSMUSG00000027849.12|synaptotagmin VI
mm10_v2_chrX_+_20364481_20364616	0.530739	Hoxd11_Cdx1_Hoxc11	ENSMUST00000033372.6|Rp2h|ENSMUSG00000060090.10|retinitis pigmentosa 2 homolog (human) 	ENSMUST00000115391.1|Rp2h|ENSMUSG00000060090.10|retinitis pigmentosa 2 homolog (human) 	ENSMUST00000115387.1|Rp2h|ENSMUSG00000060090.10|retinitis pigmentosa 2 homolog (human)
mm10_v2_chr1_-_157256682_157256701	0.52988	Hoxd11_Cdx1_Hoxc11	ENSMUST00000134543.1|Rasal2|ENSMUSG00000070565.5|RAS protein activator like 2
mm10_v2_chr15_-_81843699_81843755	0.524813	Hoxd11_Cdx1_Hoxc11	ENSMUST00000092020.2|Gm8444|ENSMUSG00000069439.2|predicted gene 8444
mm10_v2_chrX_-_162565514_162565617	0.518473	Hoxd11_Cdx1_Hoxc11	ENSMUST00000154424.1|Reps2|ENSMUSG00000040855.9|RALBP1 associated Eps domain containing protein 2
mm10_v2_chr8_+_25720054_25720099	0.516671	Hoxd11_Cdx1_Hoxc11	ENSMUST00000068916.8|Ppapdc1b|ENSMUSG00000031570.10|phosphatidic acid phosphatase type 2 domain containing 1B 	ENSMUST00000139836.1|Ppapdc1b|ENSMUSG00000031570.10|phosphatidic acid phosphatase type 2 domain containing 1B
mm10_v2_chr18_-_6490808_6490869	0.512064	Hoxd11_Cdx1_Hoxc11	ENSMUST00000028100.6|Epc1|ENSMUSG00000024240.7|enhancer of polycomb homolog 1 (Drosophila) 	ENSMUST00000050542.5|Epc1|ENSMUSG00000024240.7|enhancer of polycomb homolog 1 (Drosophila)
mm10_v2_chr17_-_35910032_35910076	0.495227	Hoxd11_Cdx1_Hoxc11	ENSMUST00000141662.1|Atat1|ENSMUSG00000024426.11|alpha tubulin acetyltransferase 1 	ENSMUST00000056034.6|Atat1|ENSMUSG00000024426.11|alpha tubulin acetyltransferase 1 	ENSMUST00000077494.6|Atat1|ENSMUSG00000024426.11|alpha tubulin acetyltransferase 1 	ENSMUST00000149277.1|Atat1|ENSMUSG00000024426.11|alpha tubulin acetyltransferase 1 	ENSMUST00000061052.5|Atat1|ENSMUSG00000024426.11|alpha tubulin acetyltransferase 1
mm10_v2_chr18_+_37655891_37655915	0.493152	Hoxd11_Cdx1_Hoxc11	ENSMUST00000097608.2|3222401L13Rik|ENSMUSG00000073590.2|RIKEN cDNA 3222401L13 gene
mm10_v2_chr3_+_88965812_88965812	0.490053	Hoxd11_Cdx1_Hoxc11	ENSMUST00000090933.4|Ash1l|ENSMUSG00000028053.7|ash1 (absent, small, or homeotic)-like (Drosophila)
mm10_v2_chrX_+_82948861_82948915	0.488737	Hoxd11_Cdx1_Hoxc11	ENSMUST00000114000.1|Dmd|ENSMUSG00000045103.11|dystrophin, muscular dystrophy
mm10_v2_chr14_+_28511344_28511405	0.482154	Hoxd11_Cdx1_Hoxc11	ENSMUST00000112272.1|Wnt5a|ENSMUSG00000021994.8|wingless-related MMTV integration site 5A
mm10_v2_chr4_+_62286441_62286516	0.479748	Hoxd11_Cdx1_Hoxc11	ENSMUST00000084530.2|Slc31a2|ENSMUSG00000066152.5|solute carrier family 31, member 2
mm10_v2_chr2_+_116067213_116067250	0.479046	Hoxd11_Cdx1_Hoxc11	ENSMUST00000152412.1|G630016G05Rik|ENSMUSG00000086308.1|RIKEN cDNA G630016G05 gene
mm10_v2_chr2_-_116064721_116064749	0.478233	Hoxd11_Cdx1_Hoxc11	ENSMUST00000110906.2|Meis2|ENSMUSG00000027210.14|Meis homeobox 2
mm10_v2_chr10_-_30655859_30655868	0.477699	Hoxd11_Cdx1_Hoxc11	ENSMUST00000092610.4|Ncoa7|ENSMUSG00000039697.9|nuclear receptor coactivator 7
mm10_v2_chr18_-_62756275_62756347	0.474641	Hoxd11_Cdx1_Hoxc11	ENSMUST00000067450.1|2700046A07Rik|ENSMUSG00000041789.6|RIKEN cDNA 2700046A07 gene 	ENSMUST00000048109.5|2700046A07Rik|ENSMUSG00000041789.6|RIKEN cDNA 2700046A07 gene
mm10_v2_chr16_+_32877775_32877831	0.468525	Hoxd11_Cdx1_Hoxc11	ENSMUST00000023489.4|Fyttd1|ENSMUSG00000022800.7|forty-two-three domain containing 1 	ENSMUST00000171325.1|Fyttd1|ENSMUSG00000022800.7|forty-two-three domain containing 1
mm10_v2_chr7_+_4922251_4922251	0.462909	Hoxd11_Cdx1_Hoxc11	ENSMUST00000047309.5|Nat14|ENSMUSG00000035285.5|N-acetyltransferase 14
mm10_v2_chr9_-_101198999_101199080	0.462891	Hoxd11_Cdx1_Hoxc11	ENSMUST00000066773.7|Ppp2r3a|ENSMUSG00000043154.9|protein phosphatase 2, regulatory subunit B'', alpha
mm10_v2_chr8_+_40307458_40307458	0.450661	Hoxd11_Cdx1_Hoxc11	ENSMUST00000068999.7|Micu3|ENSMUSG00000039478.9|mitochondrial calcium uptake family, member 3
mm10_v2_chr11_+_97798995_97799021	0.440381	Hoxd11_Cdx1_Hoxc11	ENSMUST00000143571.1|Lasp1|ENSMUSG00000038366.9|LIM and SH3 protein 1
mm10_v2_chr10_-_105574435_105574451	0.436549	Hoxd11_Cdx1_Hoxc11	ENSMUST00000061506.8|Tmtc2|ENSMUSG00000036019.8|transmembrane and tetratricopeptide repeat containing 2
mm10_v2_chr1_-_175491130_175491130	0.429768	Hoxd11_Cdx1_Hoxc11	ENSMUST00000027812.5|Rgs7|ENSMUSG00000026527.8|regulator of G protein signaling 7
mm10_v2_chr11_-_103267405_103267472	0.428261	Hoxd11_Cdx1_Hoxc11	ENSMUST00000021324.2|Map3k14|ENSMUSG00000020941.7|mitogen-activated protein kinase kinase kinase 14
mm10_v2_chr4_+_102254739_102254761	0.423487	Hoxd11_Cdx1_Hoxc11	ENSMUST00000106907.2|Pde4b|ENSMUSG00000028525.10|phosphodiesterase 4B, cAMP specific
mm10_v2_chr12_+_33147754_33147770	0.421383	Hoxd11_Cdx1_Hoxc11	ENSMUST00000146040.1|Atxn7l1|ENSMUSG00000020564.10|ataxin 7-like 1 	ENSMUST00000125192.1|Atxn7l1|ENSMUSG00000020564.10|ataxin 7-like 1
mm10_v2_chr16_-_55838827_55838899	0.41598	Hoxd11_Cdx1_Hoxc11	ENSMUST00000096026.2|Nfkbiz|ENSMUSG00000035356.10|nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta 	ENSMUST00000036273.6|Nfkbiz|ENSMUSG00000035356.10|nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta 	ENSMUST00000114457.1|Nfkbiz|ENSMUSG00000035356.10|nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta
mm10_v2_chr15_-_42676967_42676978	0.41078	Hoxd11_Cdx1_Hoxc11	ENSMUST00000022921.5|Angpt1|ENSMUSG00000022309.8|angiopoietin 1
mm10_v2_chr7_+_45062429_45062505	0.402582	Hoxd11_Cdx1_Hoxc11	ENSMUST00000107830.1|Nosip|ENSMUSG00000003421.6|nitric oxide synthase interacting protein 	ENSMUST00000003513.3|Nosip|ENSMUSG00000003421.6|nitric oxide synthase interacting protein 	ENSMUST00000107829.1|Nosip|ENSMUSG00000003421.6|nitric oxide synthase interacting protein 	ENSMUST00000150609.1|Nosip|ENSMUSG00000003421.6|nitric oxide synthase interacting protein
mm10_v2_chrX_-_75578188_75578247	0.390104	Hoxd11_Cdx1_Hoxc11	ENSMUST00000033545.5|Rab39b|ENSMUSG00000031202.5|RAB39B, member RAS oncogene family
mm10_v2_chr3_+_103575231_103575255	0.38729	Hoxd11_Cdx1_Hoxc11	ENSMUST00000121834.1|Syt6|ENSMUSG00000027849.12|synaptotagmin VI
mm10_v2_chr2_-_170194033_170194064	0.384543	Hoxd11_Cdx1_Hoxc11	ENSMUST00000180625.1|Gm17619|ENSMUSG00000097514.1|predicted gene, 17619
mm10_v2_chr4_+_5724304_5724357	0.380594	Hoxd11_Cdx1_Hoxc11	ENSMUST00000108380.1|Fam110b|ENSMUSG00000049119.8|family with sequence similarity 110, member B
mm10_v2_chr1_-_105659008_105659008	0.374828	Hoxd11_Cdx1_Hoxc11	ENSMUST00000070699.8|Pign|ENSMUSG00000056536.8|phosphatidylinositol glycan anchor biosynthesis, class N
mm10_v2_chr4_+_11704439_11704457	0.362646	Hoxd11_Cdx1_Hoxc11	ENSMUST00000108304.2|Gem|ENSMUSG00000028214.7|GTP binding protein (gene overexpressed in skeletal muscle)
mm10_v2_chr12_+_105453831_105453919	0.356165	Hoxd11_Cdx1_Hoxc11	ENSMUST00000178224.1|D430019H16Rik|ENSMUSG00000094910.1|RIKEN cDNA D430019H16 gene
mm10_v2_chr5_-_25100624_25100657	0.355526	Hoxd11_Cdx1_Hoxc11	ENSMUST00000030784.7|Prkag2|ENSMUSG00000028944.8|protein kinase, AMP-activated, gamma 2 non-catalytic subunit
mm10_v2_chr19_-_46395722_46395756	0.336903	Hoxd11_Cdx1_Hoxc11	ENSMUST00000040270.4|Actr1a|ENSMUSG00000025228.4|ARP1 actin-related protein 1A, centractin alpha
mm10_v2_chr1_+_153874335_153874354	0.334262	Hoxd11_Cdx1_Hoxc11	ENSMUST00000055314.3|Gm5531|ENSMUSG00000043282.3|predicted gene 5531
mm10_v2_chr4_+_59035088_59035247	0.331225	Hoxd11_Cdx1_Hoxc11	ENSMUST00000041160.6|Gng10|ENSMUSG00000038607.6|guanine nucleotide binding protein (G protein), gamma 10
mm10_v2_chr1_+_89454769_89454885	0.323848	Hoxd11_Cdx1_Hoxc11	ENSMUST00000027521.8|Agap1|ENSMUSG00000055013.8|ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 	ENSMUST00000074945.5|Agap1|ENSMUSG00000055013.8|ArfGAP with GTPase domain, ankyrin repeat and PH domain 1
mm10_v2_chr4_+_136284708_136284775	0.320983	Hoxd11_Cdx1_Hoxc11	ENSMUST00000130223.1|Zfp46|ENSMUSG00000051351.8|zinc finger protein 46
mm10_v2_chr3_+_66985947_66985986	0.314076	Hoxd11_Cdx1_Hoxc11	ENSMUST00000161726.1|Rsrc1|ENSMUSG00000034544.11|arginine/serine-rich coiled-coil 1 	ENSMUST00000160504.1|Rsrc1|ENSMUSG00000034544.11|arginine/serine-rich coiled-coil 1
mm10_v2_chr3_-_89349968_89350001	0.304337	Hoxd11_Cdx1_Hoxc11	ENSMUST00000074582.6|Adam15|ENSMUSG00000028041.11|a disintegrin and metallopeptidase domain 15 (metargidin) 	ENSMUST00000107448.2|Adam15|ENSMUSG00000028041.11|a disintegrin and metallopeptidase domain 15 (metargidin) 	ENSMUST00000029676.5|Adam15|ENSMUSG00000028041.11|a disintegrin and metallopeptidase domain 15 (metargidin)
mm10_v2_chr2_+_65930117_65930190	0.30089	Hoxd11_Cdx1_Hoxc11	ENSMUST00000176109.1|Csrnp3|ENSMUSG00000044647.10|cysteine-serine-rich nuclear protein 3
mm10_v2_chr11_-_109472611_109472688	0.293493	Hoxd11_Cdx1_Hoxc11	ENSMUST00000168740.1|Slc16a6|ENSMUSG00000041920.8|solute carrier family 16 (monocarboxylic acid transporters), member 6
mm10_v2_chr10_+_90071095_90071117	0.290654	Hoxd11_Cdx1_Hoxc11	ENSMUST00000183109.1|Anks1b|ENSMUSG00000058589.8|ankyrin repeat and sterile alpha motif domain containing 1B
mm10_v2_chr4_+_136284658_136284686	0.290468	Hoxd11_Cdx1_Hoxc11	ENSMUST00000144217.1|Zfp46|ENSMUSG00000051351.8|zinc finger protein 46
mm10_v2_chr9_-_123678873_123678885	0.28876	Hoxd11_Cdx1_Hoxc11	ENSMUST00000040960.6|Slc6a20a|ENSMUSG00000036814.6|solute carrier family 6 (neurotransmitter transporter), member 20A
mm10_v2_chr9_-_110624361_110624439	0.288049	Hoxd11_Cdx1_Hoxc11	ENSMUST00000035069.9|Nradd|ENSMUSG00000032491.10|neurotrophin receptor associated death domain
mm10_v2_chr6_-_112947246_112947277	0.285061	Hoxd11_Cdx1_Hoxc11	ENSMUST00000088373.4|Srgap3|ENSMUSG00000030257.10|SLIT-ROBO Rho GTPase activating protein 3
mm10_v2_chr2_-_79456750_79456761	0.28465	Hoxd11_Cdx1_Hoxc11	ENSMUST00000041099.4|Neurod1|ENSMUSG00000034701.9|neurogenic differentiation 1
mm10_v2_chr3_-_96220880_96220899	0.283478	Hoxd11_Cdx1_Hoxc11	ENSMUST00000090782.3|Hist2h2ac|ENSMUSG00000068855.3|histone cluster 2, H2ac
mm10_v2_chr4_+_105789869_105789869	0.281757	Hoxd11_Cdx1_Hoxc11	ENSMUST00000184254.1|Gm12728|ENSMUSG00000083780.2|predicted gene 12728
mm10_v2_chr6_-_12749193_12749253	0.270962	Hoxd11_Cdx1_Hoxc11	ENSMUST00000046121.6|Thsd7a|ENSMUSG00000032625.8|thrombospondin, type I, domain containing 7A 	ENSMUST00000172356.1|Thsd7a|ENSMUSG00000032625.8|thrombospondin, type I, domain containing 7A
mm10_v2_chr3_-_87768932_87768960	0.269785	Hoxd11_Cdx1_Hoxc11	ENSMUST00000173184.1|Pear1|ENSMUSG00000028073.9|platelet endothelial aggregation receptor 1 	ENSMUST00000172621.1|Pear1|ENSMUSG00000028073.9|platelet endothelial aggregation receptor 1 	ENSMUST00000174759.1|Pear1|ENSMUSG00000028073.9|platelet endothelial aggregation receptor 1 	ENSMUST00000172590.1|Pear1|ENSMUSG00000028073.9|platelet endothelial aggregation receptor 1 	ENSMUST00000079083.5|Pear1|ENSMUSG00000028073.9|platelet endothelial aggregation receptor 1
mm10_v2_chr14_+_66868850_66868850	0.257234	Hoxd11_Cdx1_Hoxc11	ENSMUST00000100453.1|Gm5464|ENSMUSG00000075553.1|predicted gene 5464
mm10_v2_chr2_-_116067391_116067444	0.257206	Hoxd11_Cdx1_Hoxc11	ENSMUST00000140185.1|2700033N17Rik|ENSMUSG00000086328.1|RIKEN cDNA 2700033N17 gene
mm10_v2_chr11_-_77607812_77607860	0.253552	Hoxd11_Cdx1_Hoxc11	ENSMUST00000058496.7|Taok1|ENSMUSG00000017291.7|TAO kinase 1
mm10_v2_chr13_+_104109752_104109829	0.252084	Hoxd11_Cdx1_Hoxc11	ENSMUST00000160322.1|Sgtb|ENSMUSG00000042743.7|small glutamine-rich tetratricopeptide repeat (TPR)-containing, beta 	ENSMUST00000159574.1|Sgtb|ENSMUSG00000042743.7|small glutamine-rich tetratricopeptide repeat (TPR)-containing, beta
mm10_v2_chr4_+_20008357_20008451	0.2457	Hoxd11_Cdx1_Hoxc11	ENSMUST00000117632.1|Ttpa|ENSMUSG00000073988.7|tocopherol (alpha) transfer protein 	ENSMUST00000098244.1|Ttpa|ENSMUSG00000073988.7|tocopherol (alpha) transfer protein
mm10_v2_chr17_-_35897073_35897141	0.240877	Hoxd11_Cdx1_Hoxc11	ENSMUST00000150056.1|2310061I04Rik|ENSMUSG00000050705.9|RIKEN cDNA 2310061I04 gene 	ENSMUST00000156817.1|2310061I04Rik|ENSMUSG00000050705.9|RIKEN cDNA 2310061I04 gene 	ENSMUST00000146451.1|2310061I04Rik|ENSMUSG00000050705.9|RIKEN cDNA 2310061I04 gene 	ENSMUST00000148482.1|2310061I04Rik|ENSMUSG00000050705.9|RIKEN cDNA 2310061I04 gene
mm10_v2_chr19_-_6067785_6067865	0.240253	Hoxd11_Cdx1_Hoxc11	ENSMUST00000162575.1|Tm7sf2|ENSMUSG00000024799.8|transmembrane 7 superfamily member 2 	ENSMUST00000159084.1|Tm7sf2|ENSMUSG00000024799.8|transmembrane 7 superfamily member 2 	ENSMUST00000161718.1|Tm7sf2|ENSMUSG00000024799.8|transmembrane 7 superfamily member 2 	ENSMUST00000162810.1|Tm7sf2|ENSMUSG00000024799.8|transmembrane 7 superfamily member 2 	ENSMUST00000025713.5|Tm7sf2|ENSMUSG00000024799.8|transmembrane 7 superfamily member 2 	ENSMUST00000113543.2|Tm7sf2|ENSMUSG00000024799.8|transmembrane 7 superfamily member 2 	ENSMUST00000161528.1|Tm7sf2|ENSMUSG00000024799.8|transmembrane 7 superfamily member 2
mm10_v2_chr3_-_89349939_89349959	0.238667	Hoxd11_Cdx1_Hoxc11	ENSMUST00000107446.1|Adam15|ENSMUSG00000028041.11|a disintegrin and metallopeptidase domain 15 (metargidin)
mm10_v2_chr9_-_123678782_123678850	0.232118	Hoxd11_Cdx1_Hoxc11	ENSMUST00000170591.1|Slc6a20a|ENSMUSG00000036814.6|solute carrier family 6 (neurotransmitter transporter), member 20A 	ENSMUST00000171647.1|Slc6a20a|ENSMUSG00000036814.6|solute carrier family 6 (neurotransmitter transporter), member 20A
mm10_v2_chr18_+_35770318_35770318	0.22868	Hoxd11_Cdx1_Hoxc11	ENSMUST00000165299.1|Gm16490|ENSMUSG00000091842.1|predicted gene 16490
mm10_v2_chr9_+_121950988_121951044	0.220904	Hoxd11_Cdx1_Hoxc11	ENSMUST00000043011.7|Fam198a|ENSMUSG00000038233.8|family with sequence similarity 198, member A
mm10_v2_chr19_-_6987621_6987764	0.220564	Hoxd11_Cdx1_Hoxc11	ENSMUST00000130048.1|Vegfb|ENSMUSG00000024962.7|vascular endothelial growth factor B 	ENSMUST00000025914.6|Vegfb|ENSMUSG00000024962.7|vascular endothelial growth factor B
mm10_v2_chr2_-_79908428_79908438	0.218843	Hoxd11_Cdx1_Hoxc11	ENSMUST00000102652.3|Pde1a|ENSMUSG00000059173.13|phosphodiesterase 1A, calmodulin-dependent 	ENSMUST00000102651.3|Pde1a|ENSMUSG00000059173.13|phosphodiesterase 1A, calmodulin-dependent
mm10_v2_chr1_-_165934900_165935036	0.21609	Hoxd11_Cdx1_Hoxc11	ENSMUST00000069609.5|Pou2f1|ENSMUSG00000026565.12|POU domain, class 2, transcription factor 1 	ENSMUST00000111427.2|Pou2f1|ENSMUSG00000026565.12|POU domain, class 2, transcription factor 1 	ENSMUST00000111426.4|Pou2f1|ENSMUSG00000026565.12|POU domain, class 2, transcription factor 1
mm10_v2_chr10_+_119992916_119992958	0.208271	Hoxd11_Cdx1_Hoxc11	ENSMUST00000105261.2|Grip1|ENSMUSG00000034813.10|glutamate receptor interacting protein 1
mm10_v2_chr2_+_116900152_116900216	0.206585	Hoxd11_Cdx1_Hoxc11	ENSMUST00000126467.1|D330050G23Rik|ENSMUSG00000085316.1|RIKEN cDNA D330050G23 gene 	ENSMUST00000128305.1|D330050G23Rik|ENSMUSG00000085316.1|RIKEN cDNA D330050G23 gene 	ENSMUST00000155323.1|D330050G23Rik|ENSMUSG00000085316.1|RIKEN cDNA D330050G23 gene
mm10_v2_chr17_-_35897371_35897431	0.20362	Hoxd11_Cdx1_Hoxc11	ENSMUST00000148721.1|2310061I04Rik|ENSMUSG00000050705.9|RIKEN cDNA 2310061I04 gene
mm10_v2_chrX_-_43274786_43274786	0.200079	Hoxd11_Cdx1_Hoxc11	ENSMUST00000016294.7|Tenm1|ENSMUSG00000016150.9|teneurin transmembrane protein 1
mm10_v2_chr2_+_69670100_69670134	0.198345	Hoxd11_Cdx1_Hoxc11	ENSMUST00000100050.3|Klhl41|ENSMUSG00000075307.3|kelch-like 41
mm10_v2_chrX_-_105928547_105928583	0.194003	Hoxd11_Cdx1_Hoxc11	ENSMUST00000101305.2|Atrx|ENSMUSG00000031229.10|alpha thalassemia/mental retardation syndrome X-linked homolog (human)
mm10_v2_chr4_-_82850721_82850814	0.192705	Hoxd11_Cdx1_Hoxc11	ENSMUST00000139401.1|Zdhhc21|ENSMUSG00000028403.9|zinc finger, DHHC domain containing 21
mm10_v2_chr3_+_10088173_10088173	0.186781	Hoxd11_Cdx1_Hoxc11	ENSMUST00000061419.7|Gm9833|ENSMUSG00000049230.7|predicted gene 9833
mm10_v2_chr18_-_3281712_3281747	0.185576	Hoxd11_Cdx1_Hoxc11	ENSMUST00000182204.1|Crem|ENSMUSG00000063889.10|cAMP responsive element modulator 	ENSMUST00000154705.1|Crem|ENSMUSG00000063889.10|cAMP responsive element modulator 	ENSMUST00000182833.1|Crem|ENSMUSG00000063889.10|cAMP responsive element modulator 	ENSMUST00000151084.1|Crem|ENSMUSG00000063889.10|cAMP responsive element modulator
mm10_v2_chr3_+_66219909_66219927	0.18031	Hoxd11_Cdx1_Hoxc11	ENSMUST00000029421.5|Ptx3|ENSMUSG00000027832.5|pentraxin related gene
mm10_v2_chr10_-_81364846_81364859	0.17484	Hoxd11_Cdx1_Hoxc11	ENSMUST00000131736.1|4930404N11Rik|ENSMUSG00000020234.4|RIKEN cDNA 4930404N11 gene
mm10_v2_chr4_-_155086271_155086379	0.171172	Hoxd11_Cdx1_Hoxc11	ENSMUST00000030914.3|Rer1|ENSMUSG00000029048.3|RER1 retention in endoplasmic reticulum 1 homolog (S. cerevisiae)
mm10_v2_chr8_+_121116163_121116177	0.162975	Hoxd11_Cdx1_Hoxc11	ENSMUST00000054691.6|Foxc2|ENSMUSG00000046714.6|forkhead box C2
mm10_v2_chr5_-_73191848_73191922	0.158744	Hoxd11_Cdx1_Hoxc11	ENSMUST00000176910.1|Fryl|ENSMUSG00000070733.7|furry homolog-like (Drosophila)
mm10_v2_chr13_+_49582745_49582778	0.14784	Hoxd11_Cdx1_Hoxc11	ENSMUST00000065494.7|Omd|ENSMUSG00000048368.8|osteomodulin
mm10_v2_chr11_+_115933282_115933282	0.147579	Hoxd11_Cdx1_Hoxc11	ENSMUST00000140991.1|Sap30bp|ENSMUSG00000020755.3|SAP30 binding protein
mm10_v2_chr3_-_141931523_141931565	0.139691	Hoxd11_Cdx1_Hoxc11	ENSMUST00000106232.1|Bmpr1b|ENSMUSG00000052430.9|bone morphogenetic protein receptor, type 1B
mm10_v2_chr11_+_77216180_77216287	0.129987	Hoxd11_Cdx1_Hoxc11	ENSMUST00000037912.5|Ssh2|ENSMUSG00000037926.9|slingshot homolog 2 (Drosophila) 	ENSMUST00000156488.1|Ssh2|ENSMUSG00000037926.9|slingshot homolog 2 (Drosophila)
mm10_v2_chr15_-_79062866_79062941	0.12897	Hoxd11_Cdx1_Hoxc11	ENSMUST00000151889.1|Ankrd54|ENSMUSG00000033055.4|ankyrin repeat domain 54 	ENSMUST00000040676.4|Ankrd54|ENSMUSG00000033055.4|ankyrin repeat domain 54
mm10_v2_chr2_-_27463994_27464116	0.124163	Hoxd11_Cdx1_Hoxc11	ENSMUST00000164296.1|Brd3|ENSMUSG00000026918.10|bromodomain containing 3
mm10_v2_chr7_+_127800604_127800696	0.121313	Hoxd11_Cdx1_Hoxc11	ENSMUST00000046863.5|Hsd3b7|ENSMUSG00000042289.5|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7 	ENSMUST00000106272.1|Hsd3b7|ENSMUSG00000042289.5|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7 	ENSMUST00000139068.1|Hsd3b7|ENSMUSG00000042289.5|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7
mm10_v2_chr11_-_69662625_69662642	0.119727	Hoxd11_Cdx1_Hoxc11	ENSMUST00000018905.5|Mpdu1|ENSMUSG00000018761.8|mannose-P-dolichol utilization defect 1
mm10_v2_chr3_-_144760841_144760868	0.118497	Hoxd11_Cdx1_Hoxc11	ENSMUST00000059091.5|Clca1|ENSMUSG00000056025.6|chloride channel calcium activated 1
mm10_v2_chr14_+_8098196_8098296	0.114699	Hoxd11_Cdx1_Hoxc11	ENSMUST00000112689.2|Pxk|ENSMUSG00000033885.8|PX domain containing serine/threonine kinase 	ENSMUST00000036682.7|Pxk|ENSMUSG00000033885.8|PX domain containing serine/threonine kinase
mm10_v2_chr13_-_56895737_56895793	0.110514	Hoxd11_Cdx1_Hoxc11	ENSMUST00000022023.6|Trpc7|ENSMUSG00000021541.7|transient receptor potential cation channel, subfamily C, member 7 	ENSMUST00000109871.1|Trpc7|ENSMUSG00000021541.7|transient receptor potential cation channel, subfamily C, member 7
mm10_v2_chr1_-_144177259_144177372	0.108965	Hoxd11_Cdx1_Hoxc11	ENSMUST00000111941.1|Rgs13|ENSMUSG00000051079.2|regulator of G-protein signaling 13 	ENSMUST00000052375.1|Rgs13|ENSMUSG00000051079.2|regulator of G-protein signaling 13
mm10_v2_chr12_-_31950535_31950560	0.10877	Hoxd11_Cdx1_Hoxc11	ENSMUST00000172314.2|Hbp1|ENSMUSG00000002996.11|high mobility group box transcription factor 1
mm10_v2_chr5_-_51567717_51567732	0.0972492	Hoxd11_Cdx1_Hoxc11	ENSMUST00000127135.1|Ppargc1a|ENSMUSG00000029167.7|peroxisome proliferative activated receptor, gamma, coactivator 1 alpha 	ENSMUST00000151104.1|Ppargc1a|ENSMUSG00000029167.7|peroxisome proliferative activated receptor, gamma, coactivator 1 alpha
mm10_v2_chr13_-_41273977_41273977	0.0934236	Hoxd11_Cdx1_Hoxc11	ENSMUST00000163881.1|Gm17364|ENSMUSG00000090853.1|predicted gene, 17364
mm10_v2_chr6_+_87981683_87981717	0.0924032	Hoxd11_Cdx1_Hoxc11	ENSMUST00000143871.1|Gm5577|ENSMUSG00000084950.1|predicted gene 5577 	ENSMUST00000153372.1|Gm5577|ENSMUSG00000084950.1|predicted gene 5577
mm10_v2_chr1_-_172027251_172027268	0.0917602	Hoxd11_Cdx1_Hoxc11	ENSMUST00000138714.1|Vangl2|ENSMUSG00000026556.9|vang-like 2 (van gogh, Drosophila)
mm10_v2_chr17_-_78985428_78985468	0.0869335	Hoxd11_Cdx1_Hoxc11	ENSMUST00000118991.1|Prkd3|ENSMUSG00000024070.9|protein kinase D3
mm10_v2_chr14_-_66868572_66868688	0.0837532	Hoxd11_Cdx1_Hoxc11	ENSMUST00000022629.8|Dpysl2|ENSMUSG00000022048.8|dihydropyrimidinase-like 2
mm10_v2_chr5_+_32611171_32611245	0.0834245	Hoxd11_Cdx1_Hoxc11	ENSMUST00000072311.6|Yes1|ENSMUSG00000014932.9|Yamaguchi sarcoma viral (v-yes) oncogene homolog 1 	ENSMUST00000168707.2|Yes1|ENSMUSG00000014932.9|Yamaguchi sarcoma viral (v-yes) oncogene homolog 1
mm10_v2_chr11_-_120624973_120625014	0.0823723	Hoxd11_Cdx1_Hoxc11	ENSMUST00000106183.2|Sirt7|ENSMUSG00000025138.8|sirtuin 7 	ENSMUST00000080202.5|Sirt7|ENSMUSG00000025138.8|sirtuin 7
mm10_v2_chr7_-_119895446_119895543	0.0819009	Hoxd11_Cdx1_Hoxc11	ENSMUST00000098080.2|Dcun1d3|ENSMUSG00000048787.6|DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae)
mm10_v2_chr17_-_51826562_51826601	0.074562	Hoxd11_Cdx1_Hoxc11	ENSMUST00000024720.4|Satb1|ENSMUSG00000023927.9|special AT-rich sequence binding protein 1 	ENSMUST00000129667.1|Satb1|ENSMUSG00000023927.9|special AT-rich sequence binding protein 1 	ENSMUST00000156051.1|Satb1|ENSMUSG00000023927.9|special AT-rich sequence binding protein 1 	ENSMUST00000169480.1|Satb1|ENSMUSG00000023927.9|special AT-rich sequence binding protein 1 	ENSMUST00000148559.1|Satb1|ENSMUSG00000023927.9|special AT-rich sequence binding protein 1
mm10_v2_chr17_+_35059035_35059130	0.0723582	Hoxd11_Cdx1_Hoxc11	ENSMUST00000007255.6|Ddah2|ENSMUSG00000007039.6|dimethylarginine dimethylaminohydrolase 2 	ENSMUST00000174493.1|Ddah2|ENSMUSG00000007039.6|dimethylarginine dimethylaminohydrolase 2
mm10_v2_chr15_-_82047579_82047610	0.070634	Hoxd11_Cdx1_Hoxc11	ENSMUST00000166578.1|Nhp2l1|ENSMUSG00000063480.7|NHP2 non-histone chromosome protein 2-like 1 (S. cerevisiae) 	ENSMUST00000080622.7|Nhp2l1|ENSMUSG00000063480.7|NHP2 non-histone chromosome protein 2-like 1 (S. cerevisiae)
mm10_v2_chr4_-_47057296_47057356	0.069989	Hoxd11_Cdx1_Hoxc11	ENSMUST00000107747.1|Anks6|ENSMUSG00000066191.5|ankyrin repeat and sterile alpha motif domain containing 6 	ENSMUST00000084616.2|Anks6|ENSMUSG00000066191.5|ankyrin repeat and sterile alpha motif domain containing 6
mm10_v2_chr14_+_47663756_47663756	0.0698124	Hoxd11_Cdx1_Hoxc11	ENSMUST00000022391.7|Ktn1|ENSMUSG00000021843.10|kinectin 1
mm10_v2_chr2_-_79908389_79908403	0.0663019	Hoxd11_Cdx1_Hoxc11	ENSMUST00000090756.4|Pde1a|ENSMUSG00000059173.13|phosphodiesterase 1A, calmodulin-dependent
mm10_v2_chr3_-_95106779_95106897	0.0575844	Hoxd11_Cdx1_Hoxc11	ENSMUST00000005768.7|Pip5k1a|ENSMUSG00000028126.10|phosphatidylinositol-4-phosphate 5-kinase, type 1 alpha 	ENSMUST00000107232.2|Pip5k1a|ENSMUSG00000028126.10|phosphatidylinositol-4-phosphate 5-kinase, type 1 alpha 	ENSMUST00000107236.2|Pip5k1a|ENSMUSG00000028126.10|phosphatidylinositol-4-phosphate 5-kinase, type 1 alpha
mm10_v2_chr7_+_30565410_30565432	0.0540814	Hoxd11_Cdx1_Hoxc11	ENSMUST00000043850.7|Igflr1|ENSMUSG00000036826.8|IGF-like family receptor 1
mm10_v2_chr7_+_103550368_103550368	0.048832	Hoxd11_Cdx1_Hoxc11	ENSMUST00000106888.1|Olfr613|ENSMUSG00000078624.2|olfactory receptor 613
mm10_v2_chr3_-_88458876_88459043	0.047214	Hoxd11_Cdx1_Hoxc11	ENSMUST00000147200.1|Sema4a|ENSMUSG00000028064.11|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A 	ENSMUST00000169222.1|Sema4a|ENSMUSG00000028064.11|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A
mm10_v2_chr15_+_6422240_6422327	0.0452284	Hoxd11_Cdx1_Hoxc11	ENSMUST00000163082.1|Dab2|ENSMUSG00000022150.10|disabled 2, mitogen-responsive phosphoprotein
mm10_v2_chr3_-_89960562_89960629	0.044469	Hoxd11_Cdx1_Hoxc11	ENSMUST00000069805.7|Atp8b2|ENSMUSG00000060671.6|ATPase, class I, type 8B, member 2
mm10_v2_chr4_-_14826582_14826589	0.0433152	Hoxd11_Cdx1_Hoxc11	ENSMUST00000117268.1|Otud6b|ENSMUSG00000040550.10|OTU domain containing 6B
mm10_v2_chr2_-_180824596_180824630	0.0424977	Hoxd11_Cdx1_Hoxc11	ENSMUST00000148700.1|Gm14340|ENSMUSG00000074507.6|predicted gene 14340
mm10_v2_chr5_+_29378604_29378699	0.0419126	Hoxd11_Cdx1_Hoxc11	ENSMUST00000181005.1|4632411P08Rik|ENSMUSG00000097561.1|RIKEN cDNA 4632411P08 gene
mm10_v2_chr3_+_66985647_66985678	0.0418896	Hoxd11_Cdx1_Hoxc11	ENSMUST00000162362.1|Rsrc1|ENSMUSG00000034544.11|arginine/serine-rich coiled-coil 1 	ENSMUST00000065074.7|Rsrc1|ENSMUSG00000034544.11|arginine/serine-rich coiled-coil 1
mm10_v2_chr10_+_43524080_43524102	0.0386005	Hoxd11_Cdx1_Hoxc11	ENSMUST00000057649.6|Gm9803|ENSMUSG00000045886.6|predicted gene 9803
mm10_v2_chr3_+_96221111_96221134	0.0340393	Hoxd11_Cdx1_Hoxc11	ENSMUST00000090781.6|Hist2h2be|ENSMUSG00000068854.6|histone cluster 2, H2be
mm10_v2_chr14_+_20674311_20674371	0.0228005	Hoxd11_Cdx1_Hoxc11	ENSMUST00000048657.8|Sec24c|ENSMUSG00000039367.9|Sec24 related gene family, member C (S. cerevisiae)
mm10_v2_chrX_+_36195938_36195946	0.0160322	Hoxd11_Cdx1_Hoxc11	ENSMUST00000048067.3|Zcchc12|ENSMUSG00000036699.6|zinc finger, CCHC domain containing 12
mm10_v2_chr11_-_109473220_109473294	0.00670792	Hoxd11_Cdx1_Hoxc11	ENSMUST00000070872.6|Slc16a6|ENSMUSG00000041920.8|solute carrier family 16 (monocarboxylic acid transporters), member 6
mm10_v2_chr5_+_145204523_145204668	0.00641941	Hoxd11_Cdx1_Hoxc11	ENSMUST00000085671.3|Zkscan5|ENSMUSG00000055991.9|zinc finger with KRAB and SCAN domains 5 	ENSMUST00000031601.7|Zkscan5|ENSMUSG00000055991.9|zinc finger with KRAB and SCAN domains 5
mm10_v2_chrX_+_36195904_36195932	0.00199665	Hoxd11_Cdx1_Hoxc11	ENSMUST00000115258.2|Zcchc12|ENSMUSG00000036699.6|zinc finger, CCHC domain containing 12
