mm10_v2_chr9_-_98032983_98033122	22.026	Mafa	ENSMUST00000162295.1|Clstn2|ENSMUSG00000032452.6|calsyntenin 2
mm10_v2_chr9_-_98033181_98033207	21.7244	Mafa	ENSMUST00000035027.6|Clstn2|ENSMUSG00000032452.6|calsyntenin 2
mm10_v2_chr16_-_17576631_17576721	19.7978	Mafa	ENSMUST00000164545.1|Slc7a4|ENSMUSG00000022756.9|solute carrier family 7 (cationic amino acid transporter, y+ system), member 4 	ENSMUST00000164490.1|Slc7a4|ENSMUSG00000022756.9|solute carrier family 7 (cationic amino acid transporter, y+ system), member 4 	ENSMUST00000172164.1|Slc7a4|ENSMUSG00000022756.9|solute carrier family 7 (cationic amino acid transporter, y+ system), member 4
mm10_v2_chrX_-_73869804_73869905	16.9091	Mafa	ENSMUST00000066576.5|L1cam|ENSMUSG00000031391.12|L1 cell adhesion molecule 	ENSMUST00000114430.1|L1cam|ENSMUSG00000031391.12|L1 cell adhesion molecule
mm10_v2_chr1_-_169747634_169747649	16.4954	Mafa	ENSMUST00000027991.5|Rgs4|ENSMUSG00000038530.5|regulator of G-protein signaling 4 	ENSMUST00000111357.1|Rgs4|ENSMUSG00000038530.5|regulator of G-protein signaling 4
mm10_v2_chr14_+_119138415_119138415	15.7306	Mafa	ENSMUST00000065904.3|Hs6st3|ENSMUSG00000053465.5|heparan sulfate 6-O-sulfotransferase 3
mm10_v2_chr1_-_136260873_136260931	15.2817	Mafa	ENSMUST00000086395.5|Gpr25|ENSMUSG00000052759.6|G protein-coupled receptor 25
mm10_v2_chr8_-_70487314_70487381	14.1466	Mafa	ENSMUST00000045286.7|Tmem59l|ENSMUSG00000035964.7|transmembrane protein 59-like
mm10_v2_chr16_-_74411292_74411430	13.8712	Mafa	ENSMUST00000117200.1|Robo2|ENSMUSG00000052516.11|roundabout homolog 2 (Drosophila)
mm10_v2_chr7_+_54835959_54835959	12.9838	Mafa	ENSMUST00000082373.6|Luzp2|ENSMUSG00000063297.6|leucine zipper protein 2
mm10_v2_chr12_+_3365108_3365142	12.2388	Mafa	ENSMUST00000020999.5|Kif3c|ENSMUSG00000020668.9|kinesin family member 3C
mm10_v2_chr10_+_58813359_58813458	12.1348	Mafa	ENSMUST00000135526.2|Sh3rf3|ENSMUSG00000037990.12|SH3 domain containing ring finger 3 	ENSMUST00000153031.1|Sh3rf3|ENSMUSG00000037990.12|SH3 domain containing ring finger 3
mm10_v2_chr16_-_74411776_74411792	11.6502	Mafa	ENSMUST00000116586.2|Robo2|ENSMUSG00000052516.11|roundabout homolog 2 (Drosophila)
mm10_v2_chr11_-_66525795_66525795	10.9867	Mafa	ENSMUST00000123454.1|Shisa6|ENSMUSG00000053930.7|shisa homolog 6 (Xenopus laevis)
mm10_v2_chr4_+_102254993_102255003	10.8123	Mafa	ENSMUST00000106908.2|Pde4b|ENSMUSG00000028525.10|phosphodiesterase 4B, cAMP specific
mm10_v2_chr10_-_84440591_84440604	10.247	Mafa	ENSMUST00000020220.8|Nuak1|ENSMUSG00000020032.8|NUAK family, SNF1-like kinase, 1
mm10_v2_chr5_+_111417263_111417442	10.0931	Mafa	ENSMUST00000094463.4|Mn1|ENSMUSG00000070576.4|meningioma 1
mm10_v2_chr1_-_38836090_38836090	10.0398	Mafa	ENSMUST00000147695.1|Lonrf2|ENSMUSG00000048814.4|LON peptidase N-terminal domain and ring finger 2
mm10_v2_chr14_+_64588112_64588120	10.0273	Mafa	ENSMUST00000181808.1|A930011O12Rik|ENSMUSG00000097545.1|RIKEN cDNA A930011O12 gene
mm10_v2_chr4_+_43406435_43406615	9.51166	Mafa	ENSMUST00000098106.2|Rusc2|ENSMUSG00000035969.9|RUN and SH3 domain containing 2 	ENSMUST00000139198.1|Rusc2|ENSMUSG00000035969.9|RUN and SH3 domain containing 2
mm10_v2_chr12_-_86884808_86884842	9.49124	Mafa	ENSMUST00000038422.6|Irf2bpl|ENSMUSG00000034168.6|interferon regulatory factor 2 binding protein-like
mm10_v2_chr12_+_105453831_105453919	9.17062	Mafa	ENSMUST00000178224.1|D430019H16Rik|ENSMUSG00000094910.1|RIKEN cDNA D430019H16 gene
mm10_v2_chr15_-_25413752_25413773	9.10339	Mafa	ENSMUST00000058845.7|Basp1|ENSMUSG00000045763.7|brain abundant, membrane attached signal protein 1
mm10_v2_chr4_+_102254739_102254761	8.82252	Mafa	ENSMUST00000106907.2|Pde4b|ENSMUSG00000028525.10|phosphodiesterase 4B, cAMP specific
mm10_v2_chr16_+_96467606_96467725	8.27825	Mafa	ENSMUST00000061739.8|Pcp4|ENSMUSG00000090223.1|Purkinje cell protein 4
mm10_v2_chr5_-_142509653_142509664	8.05464	Mafa	ENSMUST00000110784.1|Radil|ENSMUSG00000029576.11|Ras association and DIL domains
mm10_v2_chr11_-_66525964_66525964	7.91168	Mafa	ENSMUST00000066679.6|Shisa6|ENSMUSG00000053930.7|shisa homolog 6 (Xenopus laevis)
mm10_v2_chr8_-_84937347_84937367	7.28911	Mafa	ENSMUST00000109741.2|Mast1|ENSMUSG00000053693.10|microtubule associated serine/threonine kinase 1 	ENSMUST00000119820.1|Mast1|ENSMUSG00000053693.10|microtubule associated serine/threonine kinase 1
mm10_v2_chr19_+_27217357_27217424	5.37222	Mafa	ENSMUST00000047645.6|Vldlr|ENSMUSG00000024924.8|very low density lipoprotein receptor 	ENSMUST00000167487.1|Vldlr|ENSMUSG00000024924.8|very low density lipoprotein receptor
mm10_v2_chr5_-_124187150_124187225	5.28235	Mafa	ENSMUST00000161938.1|Pitpnm2|ENSMUSG00000029406.9|phosphatidylinositol transfer protein, membrane-associated 2
mm10_v2_chr1_-_105356658_105356714	5.2557	Mafa	ENSMUST00000058688.5|Rnf152|ENSMUSG00000047496.5|ring finger protein 152 	ENSMUST00000172299.1|Rnf152|ENSMUSG00000047496.5|ring finger protein 152
mm10_v2_chr6_-_35308110_35308136	5.09124	Mafa	ENSMUST00000031868.4|Slc13a4|ENSMUSG00000029843.4|solute carrier family 13 (sodium/sulfate symporters), member 4
mm10_v2_chrX_-_20950597_20950613	4.86588	Mafa	ENSMUST00000009550.7|Elk1|ENSMUSG00000009406.7|ELK1, member of ETS oncogene family
mm10_v2_chr9_-_105131775_105131833	4.8515	Mafa	ENSMUST00000035179.6|Nudt16|ENSMUSG00000032565.7|nudix (nucleoside diphosphate linked moiety X)-type motif 16
mm10_v2_chrX_+_152178945_152178964	4.81273	Mafa	ENSMUST00000096275.4|Iqsec2|ENSMUSG00000041115.10|IQ motif and Sec7 domain 2
mm10_v2_chr19_+_27217011_27217042	4.48415	Mafa	ENSMUST00000164746.1|Vldlr|ENSMUSG00000024924.8|very low density lipoprotein receptor 	ENSMUST00000172302.1|Vldlr|ENSMUSG00000024924.8|very low density lipoprotein receptor
mm10_v2_chr8_+_93810832_93810843	4.46714	Mafa	ENSMUST00000034198.8|Gnao1|ENSMUSG00000031748.9|guanine nucleotide binding protein, alpha O 	ENSMUST00000125716.1|Gnao1|ENSMUSG00000031748.9|guanine nucleotide binding protein, alpha O
mm10_v2_chr9_+_108002501_108002680	4.42995	Mafa	ENSMUST00000035214.4|Ip6k1|ENSMUSG00000032594.5|inositol hexaphosphate kinase 1 	ENSMUST00000175874.1|Ip6k1|ENSMUSG00000032594.5|inositol hexaphosphate kinase 1
mm10_v2_chr1_-_121328024_121328044	4.42083	Mafa	ENSMUST00000003818.7|Insig2|ENSMUSG00000003721.8|insulin induced gene 2
mm10_v2_chr4_+_21931291_21931366	4.19194	Mafa	ENSMUST00000029908.7|Faxc|ENSMUSG00000028246.7|failed axon connections homolog (Drosophila)
mm10_v2_chr13_+_4233730_4233758	4.1057	Mafa	ENSMUST00000081326.6|Akr1c19|ENSMUSG00000071551.6|aldo-keto reductase family 1, member C19
mm10_v2_chr11_-_107337556_107337637	4.00978	Mafa	ENSMUST00000040380.6|Pitpnc1|ENSMUSG00000040430.12|phosphatidylinositol transfer protein, cytoplasmic 1
mm10_v2_chr18_-_36197343_36197403	3.72586	Mafa	ENSMUST00000115713.1|Nrg2|ENSMUSG00000060275.5|neuregulin 2 	ENSMUST00000115712.1|Nrg2|ENSMUSG00000060275.5|neuregulin 2
mm10_v2_chr4_-_35845204_35845204	3.59973	Mafa	ENSMUST00000164772.1|Lingo2|ENSMUSG00000045083.8|leucine rich repeat and Ig domain containing 2 	ENSMUST00000065173.2|Lingo2|ENSMUSG00000045083.8|leucine rich repeat and Ig domain containing 2
mm10_v2_chr11_+_87595646_87595659	3.54169	Mafa	ENSMUST00000134216.1|Mtmr4|ENSMUSG00000018401.11|myotubularin related protein 4
mm10_v2_chr4_-_59138983_59138983	3.5274	Mafa	ENSMUST00000107547.1|AI481877|ENSMUSG00000038598.9|expressed sequence AI481877
mm10_v2_chr4_+_59003121_59003215	3.40114	Mafa	ENSMUST00000095070.3|Dnajc25|ENSMUSG00000070972.7|DnaJ (Hsp40) homolog, subfamily C, member 25 	ENSMUST00000174664.1|Gm20503|ENSMUSG00000092345.1|predicted gene 20503
mm10_v2_chr7_+_140856957_140856957	3.32839	Mafa	ENSMUST00000026558.6|Ric8|ENSMUSG00000025485.6|resistance to inhibitors of cholinesterase 8 homolog (C. elegans)
mm10_v2_chrX_-_95444789_95444872	3.26416	Mafa	ENSMUST00000084535.5|Amer1|ENSMUSG00000050332.7|APC membrane recruitment 1
mm10_v2_chrX_-_122397351_122397425	3.11548	Mafa	ENSMUST00000079490.4|Nap1l3|ENSMUSG00000055733.5|nucleosome assembly protein 1-like 3
mm10_v2_chr7_-_67759735_67759759	3.05937	Mafa	ENSMUST00000074233.4|Synm|ENSMUSG00000030554.9|synemin, intermediate filament protein 	ENSMUST00000051389.8|Synm|ENSMUSG00000030554.9|synemin, intermediate filament protein
mm10_v2_chr17_-_47010513_47010568	2.76645	Mafa	ENSMUST00000113337.2|Ubr2|ENSMUSG00000023977.8|ubiquitin protein ligase E3 component n-recognin 2 	ENSMUST00000113335.2|Ubr2|ENSMUSG00000023977.8|ubiquitin protein ligase E3 component n-recognin 2
mm10_v2_chr8_+_60993189_60993247	2.74522	Mafa	ENSMUST00000034065.7|Nek1|ENSMUSG00000031644.12|NIMA (never in mitosis gene a)-related expressed kinase 1 	ENSMUST00000120689.1|Nek1|ENSMUSG00000031644.12|NIMA (never in mitosis gene a)-related expressed kinase 1
mm10_v2_chr9_-_109059216_109059259	2.72862	Mafa	ENSMUST00000112053.1|Trex1|ENSMUSG00000049734.8|three prime repair exonuclease 1
mm10_v2_chr10_-_75932468_75932502	2.62685	Mafa	ENSMUST00000120281.1|Mmp11|ENSMUSG00000000901.9|matrix metallopeptidase 11 	ENSMUST00000000924.6|Mmp11|ENSMUSG00000000901.9|matrix metallopeptidase 11
mm10_v2_chr11_-_119228461_119228504	2.61451	Mafa	ENSMUST00000036113.3|Tbc1d16|ENSMUSG00000039976.3|TBC1 domain family, member 16
mm10_v2_chr8_-_105565985_105566071	2.47648	Mafa	ENSMUST00000013304.7|Atp6v0d1|ENSMUSG00000013160.7|ATPase, H+ transporting, lysosomal V0 subunit D1
mm10_v2_chrX_+_104482774_104482858	2.33087	Mafa	ENSMUST00000087867.5|Uprt|ENSMUSG00000073016.3|uracil phosphoribosyltransferase (FUR1) homolog (S. cerevisiae)
mm10_v2_chr5_-_24423516_24423538	2.29474	Mafa	ENSMUST00000030814.6|Cdk5|ENSMUSG00000028969.6|cyclin-dependent kinase 5
mm10_v2_chr5_+_24423805_24423848	2.20323	Mafa	ENSMUST00000153274.1|Slc4a2|ENSMUSG00000028962.8|solute carrier family 4 (anion exchanger), member 2
mm10_v2_chr1_-_121327734_121327768	2.18903	Mafa	ENSMUST00000160968.1|Insig2|ENSMUSG00000003721.8|insulin induced gene 2 	ENSMUST00000162582.1|Insig2|ENSMUSG00000003721.8|insulin induced gene 2
mm10_v2_chr9_-_109059711_109059771	2.17558	Mafa	ENSMUST00000061973.4|Trex1|ENSMUSG00000049734.8|three prime repair exonuclease 1
mm10_v2_chr1_-_121327776_121327803	2.13412	Mafa	ENSMUST00000160688.1|Insig2|ENSMUSG00000003721.8|insulin induced gene 2
mm10_v2_chr4_+_42035113_42035113	2.10368	Mafa	ENSMUST00000098127.1|Gm10597|ENSMUSG00000095611.1|predicted gene 10597
mm10_v2_chr1_-_121327672_121327690	1.9081	Mafa	ENSMUST00000159085.1|Insig2|ENSMUSG00000003721.8|insulin induced gene 2 	ENSMUST00000159125.1|Insig2|ENSMUSG00000003721.8|insulin induced gene 2 	ENSMUST00000161818.1|Insig2|ENSMUSG00000003721.8|insulin induced gene 2
mm10_v2_chr4_+_155601414_155601443	1.85277	Mafa	ENSMUST00000105608.2|Slc35e2|ENSMUSG00000042202.9|solute carrier family 35, member E2
mm10_v2_chr9_-_45906837_45906894	1.60137	Mafa	ENSMUST00000161203.1|Rnf214|ENSMUSG00000042790.9|ring finger protein 214 	ENSMUST00000058720.5|Rnf214|ENSMUSG00000042790.9|ring finger protein 214 	ENSMUST00000160699.1|Rnf214|ENSMUSG00000042790.9|ring finger protein 214
mm10_v2_chr17_-_72603709_72603709	1.55642	Mafa	ENSMUST00000086639.4|Alk|ENSMUSG00000055471.6|anaplastic lymphoma kinase
mm10_v2_chr17_-_46752170_46752231	1.46444	Mafa	ENSMUST00000121671.1|Cnpy3|ENSMUSG00000023973.7|canopy 3 homolog (zebrafish) 	ENSMUST00000059844.6|Cnpy3|ENSMUSG00000023973.7|canopy 3 homolog (zebrafish)
mm10_v2_chr4_+_155601854_155601944	1.43164	Mafa	ENSMUST00000118607.1|Slc35e2|ENSMUSG00000042202.9|solute carrier family 35, member E2
mm10_v2_chr12_-_75177325_75177359	1.35164	Mafa	ENSMUST00000042299.2|Kcnh5|ENSMUSG00000034402.2|potassium voltage-gated channel, subfamily H (eag-related), member 5
mm10_v2_chr17_-_28080595_28080639	1.17483	Mafa	ENSMUST00000141806.1|Tcp11|ENSMUSG00000062859.8|t-complex protein 11 	ENSMUST00000043925.8|Tcp11|ENSMUSG00000062859.8|t-complex protein 11 	ENSMUST00000129046.1|Tcp11|ENSMUSG00000062859.8|t-complex protein 11
mm10_v2_chr17_-_28080567_28080589	1.15755	Mafa	ENSMUST00000114836.1|Tcp11|ENSMUSG00000062859.8|t-complex protein 11 	ENSMUST00000042692.5|Tcp11|ENSMUSG00000062859.8|t-complex protein 11
mm10_v2_chr1_+_171213969_171214007	1.14596	Mafa	ENSMUST00000005820.4|Nr1i3|ENSMUSG00000005677.8|nuclear receptor subfamily 1, group I, member 3 	ENSMUST00000075469.5|Nr1i3|ENSMUSG00000005677.8|nuclear receptor subfamily 1, group I, member 3 	ENSMUST00000155126.1|Nr1i3|ENSMUSG00000005677.8|nuclear receptor subfamily 1, group I, member 3
mm10_v2_chr5_-_136987501_136987569	0.838877	Mafa	ENSMUST00000137272.1|Znhit1|ENSMUSG00000059518.8|zinc finger, HIT domain containing 1 	ENSMUST00000111090.2|Znhit1|ENSMUSG00000059518.8|zinc finger, HIT domain containing 1
mm10_v2_chr9_-_51077064_51077100	0.678698	Mafa	ENSMUST00000098782.3|Layn|ENSMUSG00000060594.5|layilin
mm10_v2_chr10_-_62507737_62507764	0.644826	Mafa	ENSMUST00000020271.6|Srgn|ENSMUSG00000020077.8|serglycin
mm10_v2_chr18_-_53744509_53744629	0.635651	Mafa	ENSMUST00000049811.6|Cep120|ENSMUSG00000048799.7|centrosomal protein 120
mm10_v2_chr17_-_47611449_47611544	0.576655	Mafa	ENSMUST00000024783.8|Bysl|ENSMUSG00000023988.8|bystin-like
mm10_v2_chr7_-_18616498_18616507	0.525488	Mafa	ENSMUST00000057810.6|Psg23|ENSMUSG00000074359.2|pregnancy-specific glycoprotein 23
mm10_v2_chr17_+_47611570_47611619	0.460947	Mafa	ENSMUST00000024778.2|Med20|ENSMUSG00000092558.3|mediator complex subunit 20
mm10_v2_chrX_+_151047170_151047227	0.247607	Mafa	ENSMUST00000026296.7|Fgd1|ENSMUSG00000025265.8|FYVE, RhoGEF and PH domain containing 1
mm10_v2_chr6_+_85187438_85187510	0.224561	Mafa	ENSMUST00000045942.8|Emx1|ENSMUSG00000033726.8|empty spiracles homeobox 1
mm10_v2_chrX_-_97377190_97377216	0.107658	Mafa	ENSMUST00000037353.3|Eda2r|ENSMUSG00000034457.4|ectodysplasin A2 receptor
mm10_v2_chr10_-_81600857_81600900	0.0309502	Mafa	ENSMUST00000151858.1|Tle6|ENSMUSG00000034758.6|transducin-like enhancer of split 6, homolog of Drosophila E(spl) 	ENSMUST00000142948.1|Tle6|ENSMUSG00000034758.6|transducin-like enhancer of split 6, homolog of Drosophila E(spl) 	ENSMUST00000072020.2|Tle6|ENSMUSG00000034758.6|transducin-like enhancer of split 6, homolog of Drosophila E(spl)
mm10_v2_chr11_+_50174839_50174884	0.0208342	Mafa	ENSMUST00000020647.3|3010026O09Rik|ENSMUSG00000020381.4|RIKEN cDNA 3010026O09 gene
