mm10_v2_chr4_+_148039035_148039087	1.13291	Bhlhe40	ENSMUST00000097788.4|Mthfr|ENSMUSG00000029009.11|5,10-methylenetetrahydrofolate reductase
mm10_v2_chr7_+_35802593_35802593	1.07483	Bhlhe40	ENSMUST00000052454.2|E130304I02Rik|ENSMUSG00000044997.2|RIKEN cDNA E130304I02 gene
mm10_v2_chr4_+_148039097_148039190	1.03444	Bhlhe40	ENSMUST00000141283.1|Mthfr|ENSMUSG00000029009.11|5,10-methylenetetrahydrofolate reductase
mm10_v2_chr7_+_121707189_121707189	0.952945	Bhlhe40	ENSMUST00000065310.2|1700069B07Rik|ENSMUSG00000053081.2|RIKEN cDNA 1700069B07 gene
mm10_v2_chr11_+_97450136_97450180	0.817997	Bhlhe40	ENSMUST00000107601.1|Arhgap23|ENSMUSG00000049807.10|Rho GTPase activating protein 23
mm10_v2_chr1_-_75219245_75219262	0.654767	Bhlhe40	ENSMUST00000079464.6|Tuba4a|ENSMUSG00000026202.7|tubulin, alpha 4A
mm10_v2_chr2_+_84839395_84839424	0.615766	Bhlhe40	ENSMUST00000146816.1|Slc43a1|ENSMUSG00000027075.10|solute carrier family 43, member 1 	ENSMUST00000028469.7|Slc43a1|ENSMUSG00000027075.10|solute carrier family 43, member 1
mm10_v2_chr19_-_4201591_4201623	0.59534	Bhlhe40	ENSMUST00000025740.6|Rad9a|ENSMUSG00000024824.6|RAD9 homolog A
mm10_v2_chrX_+_136270253_136270269	0.593814	Bhlhe40	ENSMUST00000178632.1|Ngfrap1|ENSMUSG00000046432.6|nerve growth factor receptor (TNFRSF16) associated protein 1 	ENSMUST00000053540.4|Ngfrap1|ENSMUSG00000046432.6|nerve growth factor receptor (TNFRSF16) associated protein 1
mm10_v2_chr12_-_3426700_3426782	0.562865	Bhlhe40	ENSMUST00000180149.1|1110002L01Rik|ENSMUSG00000071456.2|RIKEN cDNA 1110002L01 gene
mm10_v2_chr16_+_8830093_8830104	0.532205	Bhlhe40	ENSMUST00000023150.5|1810013L24Rik|ENSMUSG00000022507.5|RIKEN cDNA 1810013L24 gene
mm10_v2_chr17_-_12769605_12769700	0.525118	Bhlhe40	ENSMUST00000024599.7|Igf2r|ENSMUSG00000023830.7|insulin-like growth factor 2 receptor
mm10_v2_chr11_-_94653964_94653964	0.491372	Bhlhe40	ENSMUST00000039949.4|Eme1|ENSMUSG00000039055.4|essential meiotic endonuclease 1 homolog 1 (S. pombe)
mm10_v2_chr12_+_86947343_86947430	0.487231	Bhlhe40	ENSMUST00000038369.4|2310044G17Rik|ENSMUSG00000034157.6|RIKEN cDNA 2310044G17 gene
mm10_v2_chr1_+_166254095_166254156	0.450317	Bhlhe40	ENSMUST00000111416.1|Ildr2|ENSMUSG00000040612.8|immunoglobulin-like domain containing receptor 2
mm10_v2_chrX_+_136270302_136270352	0.442549	Bhlhe40	ENSMUST00000113112.1|Ngfrap1|ENSMUSG00000046432.6|nerve growth factor receptor (TNFRSF16) associated protein 1
mm10_v2_chr10_-_18023229_18023265	0.418369	Bhlhe40	ENSMUST00000020002.7|Abracl|ENSMUSG00000078453.2|ABRA C-terminal like
mm10_v2_chr4_-_137048695_137048807	0.412379	Bhlhe40	ENSMUST00000049583.7|Zbtb40|ENSMUSG00000060862.9|zinc finger and BTB domain containing 40
mm10_v2_chr16_-_44139003_44139026	0.393124	Bhlhe40	ENSMUST00000124102.1|Atp6v1a|ENSMUSG00000052459.7|ATPase, H+ transporting, lysosomal V1 subunit A
mm10_v2_chr2_-_37422869_37422958	0.391235	Bhlhe40	ENSMUST00000112936.1|Rc3h2|ENSMUSG00000075376.4|ring finger and CCCH-type zinc finger domains 2 	ENSMUST00000112934.1|Rc3h2|ENSMUSG00000075376.4|ring finger and CCCH-type zinc finger domains 2
mm10_v2_chr4_-_141790891_141790931	0.376275	Bhlhe40	ENSMUST00000038014.4|Dnajc16|ENSMUSG00000040697.4|DnaJ (Hsp40) homolog, subfamily C, member 16 	ENSMUST00000153880.1|Dnajc16|ENSMUSG00000040697.4|DnaJ (Hsp40) homolog, subfamily C, member 16
mm10_v2_chrX_+_136138996_136139053	0.372511	Bhlhe40	ENSMUST00000116527.1|Bex4|ENSMUSG00000047844.3|brain expressed gene 4
mm10_v2_chr11_+_55204319_55204386	0.362884	Bhlhe40	ENSMUST00000108872.2|Slc36a1|ENSMUSG00000020261.9|solute carrier family 36 (proton/amino acid symporter), member 1 	ENSMUST00000147506.1|Slc36a1|ENSMUSG00000020261.9|solute carrier family 36 (proton/amino acid symporter), member 1 	ENSMUST00000020499.7|Slc36a1|ENSMUSG00000020261.9|solute carrier family 36 (proton/amino acid symporter), member 1
mm10_v2_chr7_+_128744870_128745020	0.356986	Bhlhe40	ENSMUST00000042942.8|Sec23ip|ENSMUSG00000055319.7|Sec23 interacting protein
mm10_v2_chr2_+_30286406_30286442	0.351636	Bhlhe40	ENSMUST00000138666.1|Nup188|ENSMUSG00000052533.8|nucleoporin 188 	ENSMUST00000113634.2|Nup188|ENSMUSG00000052533.8|nucleoporin 188
mm10_v2_chr2_+_30286383_30286397	0.346418	Bhlhe40	ENSMUST00000064447.5|Nup188|ENSMUSG00000052533.8|nucleoporin 188
mm10_v2_chr5_+_65199691_65199735	0.33766	Bhlhe40	ENSMUST00000041892.8|Wdr19|ENSMUSG00000037890.9|WD repeat domain 19
mm10_v2_chr8_-_84846860_84846934	0.33676	Bhlhe40	ENSMUST00000003912.6|Calr|ENSMUSG00000003814.8|calreticulin
mm10_v2_chrX_-_136203637_136203926	0.332061	Bhlhe40	ENSMUST00000151592.1|Tceal5|ENSMUSG00000054034.4|transcription elongation factor A (SII)-like 5 	ENSMUST00000131510.1|Tceal5|ENSMUSG00000054034.4|transcription elongation factor A (SII)-like 5 	ENSMUST00000066819.4|Tceal5|ENSMUSG00000054034.4|transcription elongation factor A (SII)-like 5
mm10_v2_chr4_-_148038769_148038821	0.331367	Bhlhe40	ENSMUST00000030879.5|Clcn6|ENSMUSG00000029016.7|chloride channel 6 	ENSMUST00000137724.1|Clcn6|ENSMUSG00000029016.7|chloride channel 6
mm10_v2_chr19_-_33392255_33392300	0.322644	Bhlhe40	ENSMUST00000096114.5|Rnls|ENSMUSG00000071573.7|renalase, FAD-dependent amine oxidase 	ENSMUST00000163093.1|Rnls|ENSMUSG00000071573.7|renalase, FAD-dependent amine oxidase
mm10_v2_chr5_+_123252087_123252136	0.317442	Bhlhe40	ENSMUST00000121964.1|Wdr66|ENSMUSG00000029442.12|WD repeat domain 66
mm10_v2_chr3_-_95882193_95882231	0.307816	Bhlhe40	ENSMUST00000159863.1|Gm129|ENSMUSG00000038550.4|predicted gene 129 	ENSMUST00000159739.1|Gm129|ENSMUSG00000038550.4|predicted gene 129 	ENSMUST00000036418.3|Gm129|ENSMUSG00000038550.4|predicted gene 129
mm10_v2_chr15_+_80255184_80255263	0.302682	Bhlhe40	ENSMUST00000109605.3|Atf4|ENSMUSG00000042406.7|activating transcription factor 4
mm10_v2_chr18_+_31609512_31609512	0.296872	Bhlhe40	ENSMUST00000164667.1|B930094E09Rik|ENSMUSG00000092124.1|RIKEN cDNA B930094E09 gene
mm10_v2_chr7_-_27166413_27166467	0.295289	Bhlhe40	ENSMUST00000108382.1|Egln2|ENSMUSG00000058709.5|EGL nine homolog 2 (C. elegans)
mm10_v2_chr7_-_90475971_90476003	0.278838	Bhlhe40	ENSMUST00000032843.7|Tmem126b|ENSMUSG00000030614.7|transmembrane protein 126B
mm10_v2_chr2_-_30286312_30286354	0.260124	Bhlhe40	ENSMUST00000100219.3|Dolk|ENSMUSG00000075419.3|dolichol kinase
mm10_v2_chr4_-_48473403_48473459	0.255108	Bhlhe40	ENSMUST00000164866.1|Tex10|ENSMUSG00000028345.9|testis expressed gene 10 	ENSMUST00000030030.8|Tex10|ENSMUSG00000028345.9|testis expressed gene 10
mm10_v2_chr2_+_166805506_166805605	0.246413	Bhlhe40	ENSMUST00000099078.3|Arfgef2|ENSMUSG00000074582.4|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)
mm10_v2_chr3_-_107333289_107333289	0.244968	Bhlhe40	ENSMUST00000061772.9|Rbm15|ENSMUSG00000048109.9|RNA binding motif protein 15
mm10_v2_chr5_-_123572976_123573031	0.240194	Bhlhe40	ENSMUST00000031388.8|Vps33a|ENSMUSG00000029434.8|vacuolar protein sorting 33A (yeast)
mm10_v2_chr8_+_111033890_111033932	0.236121	Bhlhe40	ENSMUST00000034441.7|Aars|ENSMUSG00000031960.8|alanyl-tRNA synthetase
mm10_v2_chrX_+_153832225_153832293	0.232371	Bhlhe40	ENSMUST00000148708.1|Spin2c|ENSMUSG00000046550.8|spindlin family, member 2C 	ENSMUST00000123264.1|Spin2c|ENSMUSG00000046550.8|spindlin family, member 2C 	ENSMUST00000049999.8|Spin2c|ENSMUSG00000046550.8|spindlin family, member 2C
mm10_v2_chr14_+_26579535_26579612	0.229077	Bhlhe40	ENSMUST00000037585.7|Dennd6a|ENSMUSG00000040818.7|DENN/MADD domain containing 6A
mm10_v2_chr11_-_110095937_110095969	0.226494	Bhlhe40	ENSMUST00000106664.3|Abca8a|ENSMUSG00000041828.9|ATP-binding cassette, sub-family A (ABC1), member 8a 	ENSMUST00000046223.7|Abca8a|ENSMUSG00000041828.9|ATP-binding cassette, sub-family A (ABC1), member 8a 	ENSMUST00000106662.1|Abca8a|ENSMUSG00000041828.9|ATP-binding cassette, sub-family A (ABC1), member 8a
mm10_v2_chrX_-_136068236_136068236	0.220048	Bhlhe40	ENSMUST00000049130.7|Bex2|ENSMUSG00000042750.7|brain expressed X-linked 2
mm10_v2_chr10_-_80139347_80139370	0.209229	Bhlhe40	ENSMUST00000105369.1|Dos|ENSMUSG00000035640.12|downstream of Stk11
mm10_v2_chr1_+_5083105_5083173	0.208864	Bhlhe40	ENSMUST00000044369.7|Atp6v1h|ENSMUSG00000033793.7|ATPase, H+ transporting, lysosomal V1 subunit H
mm10_v2_chrX_-_7188713_7188743	0.201926	Bhlhe40	ENSMUST00000004428.7|Clcn5|ENSMUSG00000004317.8|chloride channel 5
mm10_v2_chr16_-_5049882_5049910	0.197506	Bhlhe40	ENSMUST00000023189.7|Glyr1|ENSMUSG00000022536.7|glyoxylate reductase 1 homolog (Arabidopsis) 	ENSMUST00000115844.1|Glyr1|ENSMUSG00000022536.7|glyoxylate reductase 1 homolog (Arabidopsis)
mm10_v2_chr3_-_10440054_10440127	0.194312	Bhlhe40	ENSMUST00000099223.4|Snx16|ENSMUSG00000027534.10|sorting nexin 16 	ENSMUST00000029047.6|Snx16|ENSMUSG00000027534.10|sorting nexin 16
mm10_v2_chrX_+_134601179_134601266	0.19126	Bhlhe40	ENSMUST00000074950.4|Hnrnph2|ENSMUSG00000045427.7|heterogeneous nuclear ribonucleoprotein H2 	ENSMUST00000113203.1|Hnrnph2|ENSMUSG00000045427.7|heterogeneous nuclear ribonucleoprotein H2 	ENSMUST00000113202.1|Hnrnph2|ENSMUSG00000045427.7|heterogeneous nuclear ribonucleoprotein H2
mm10_v2_chr5_-_137533170_137533204	0.189323	Bhlhe40	ENSMUST00000168746.1|Gnb2|ENSMUSG00000029713.9|guanine nucleotide binding protein (G protein), beta 2 	ENSMUST00000170293.1|Gnb2|ENSMUSG00000029713.9|guanine nucleotide binding protein (G protein), beta 2
mm10_v2_chr11_-_75348261_75348324	0.187968	Bhlhe40	ENSMUST00000000767.5|Rpa1|ENSMUSG00000000751.7|replication protein A1 	ENSMUST00000092907.5|Rpa1|ENSMUSG00000000751.7|replication protein A1
mm10_v2_chr2_-_37703845_37703885	0.179118	Bhlhe40	ENSMUST00000155237.1|Strbp|ENSMUSG00000026915.10|spermatid perinuclear RNA binding protein
mm10_v2_chr3_+_96727611_96727620	0.177626	Bhlhe40	ENSMUST00000029740.9|Rnf115|ENSMUSG00000028098.9|ring finger protein 115
mm10_v2_chr16_-_44139630_44139766	0.175197	Bhlhe40	ENSMUST00000137557.1|Atp6v1a|ENSMUSG00000052459.7|ATPase, H+ transporting, lysosomal V1 subunit A 	ENSMUST00000147025.1|Atp6v1a|ENSMUSG00000052459.7|ATPase, H+ transporting, lysosomal V1 subunit A
mm10_v2_chr2_+_121449362_121449393	0.168231	Bhlhe40	ENSMUST00000110615.1|Serf2|ENSMUSG00000074884.6|small EDRK-rich factor 2 	ENSMUST00000099475.5|Serf2|ENSMUSG00000074884.6|small EDRK-rich factor 2
mm10_v2_chr19_-_60790692_60790700	0.162103	Bhlhe40	ENSMUST00000025955.6|Eif3a|ENSMUSG00000024991.7|eukaryotic translation initiation factor 3, subunit A
mm10_v2_chr3_-_95882031_95882074	0.161196	Bhlhe40	ENSMUST00000161994.1|Gm129|ENSMUSG00000038550.4|predicted gene 129
mm10_v2_chrX_+_134601271_134601286	0.159275	Bhlhe40	ENSMUST00000050331.6|Hnrnph2|ENSMUSG00000045427.7|heterogeneous nuclear ribonucleoprotein H2 	ENSMUST00000059297.5|Hnrnph2|ENSMUSG00000045427.7|heterogeneous nuclear ribonucleoprotein H2
mm10_v2_chr16_-_92466081_92466187	0.15688	Bhlhe40	ENSMUST00000060005.8|Rcan1|ENSMUSG00000022951.9|regulator of calcineurin 1
mm10_v2_chr11_-_110095974_110096043	0.144066	Bhlhe40	ENSMUST00000100287.2|Abca8a|ENSMUSG00000041828.9|ATP-binding cassette, sub-family A (ABC1), member 8a
mm10_v2_chr5_-_137533212_137533290	0.142634	Bhlhe40	ENSMUST00000143495.1|Gnb2|ENSMUSG00000029713.9|guanine nucleotide binding protein (G protein), beta 2 	ENSMUST00000111038.1|Epo|ENSMUSG00000029711.7|erythropoietin
mm10_v2_chr16_+_5050012_5050122	0.139053	Bhlhe40	ENSMUST00000052449.5|Ubn1|ENSMUSG00000039473.7|ubinuclein 1
mm10_v2_chr17_+_33824591_33824644	0.131725	Bhlhe40	ENSMUST00000048249.6|Ndufa7|ENSMUSG00000041881.6|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7 (B14.5a)
mm10_v2_chrX_-_152327430_152327495	0.130659	Bhlhe40	ENSMUST00000181635.1|2900056M20Rik|ENSMUSG00000087403.2|RIKEN cDNA 2900056M20 gene 	ENSMUST00000141922.1|2900056M20Rik|ENSMUSG00000087403.2|RIKEN cDNA 2900056M20 gene 	ENSMUST00000154085.1|2900056M20Rik|ENSMUSG00000087403.2|RIKEN cDNA 2900056M20 gene 	ENSMUST00000148326.1|2900056M20Rik|ENSMUSG00000087403.2|RIKEN cDNA 2900056M20 gene 	ENSMUST00000135115.1|2900056M20Rik|ENSMUSG00000087403.2|RIKEN cDNA 2900056M20 gene 	ENSMUST00000149098.1|2900056M20Rik|ENSMUSG00000087403.2|RIKEN cDNA 2900056M20 gene
mm10_v2_chr10_+_78574492_78574545	0.121512	Bhlhe40	ENSMUST00000105384.3|Ilvbl|ENSMUSG00000032763.10|ilvB (bacterial acetolactate synthase)-like
mm10_v2_chr17_-_33824346_33824562	0.118409	Bhlhe40	ENSMUST00000173879.1|Rps28|ENSMUSG00000067288.6|ribosomal protein S28 	ENSMUST00000166693.2|Rps28|ENSMUSG00000067288.6|ribosomal protein S28 	ENSMUST00000173019.1|Rps28|ENSMUSG00000067288.6|ribosomal protein S28 	ENSMUST00000087342.6|Rps28|ENSMUSG00000067288.6|ribosomal protein S28 	ENSMUST00000173844.1|Rps28|ENSMUSG00000067288.6|ribosomal protein S28
mm10_v2_chr3_-_90052463_90052521	0.096198	Bhlhe40	ENSMUST00000029553.9|Ubap2l|ENSMUSG00000042520.10|ubiquitin associated protein 2-like 	ENSMUST00000064639.8|Ubap2l|ENSMUSG00000042520.10|ubiquitin associated protein 2-like 	ENSMUST00000090908.6|Ubap2l|ENSMUSG00000042520.10|ubiquitin associated protein 2-like
mm10_v2_chr7_-_35802968_35803007	0.0802761	Bhlhe40	ENSMUST00000061586.4|Zfp507|ENSMUSG00000044452.4|zinc finger protein 507
mm10_v2_chr19_-_7241216_7241226	0.0794374	Bhlhe40	ENSMUST00000025675.9|Naa40|ENSMUSG00000024764.9|N(alpha)-acetyltransferase 40, NatD catalytic subunit, homolog (S. cerevisiae)
mm10_v2_chr8_+_25601591_25601607	0.0534548	Bhlhe40	ENSMUST00000155861.1|Whsc1l1|ENSMUSG00000054823.9|Wolf-Hirschhorn syndrome candidate 1-like 1 (human)
mm10_v2_chr5_-_72168142_72168199	0.0524172	Bhlhe40	ENSMUST00000013693.6|Commd8|ENSMUSG00000029213.7|COMM domain containing 8
mm10_v2_chr3_-_96727436_96727452	0.0401936	Bhlhe40	ENSMUST00000154679.1|Polr3c|ENSMUSG00000028099.2|polymerase (RNA) III (DNA directed) polypeptide C
mm10_v2_chrX_-_135210672_135210700	0.0305498	Bhlhe40	ENSMUST00000033783.1|Tceal6|ENSMUSG00000031409.1|transcription elongation factor A (SII)-like 6
mm10_v2_chr14_+_50924968_50925004	0.0296324	Bhlhe40	ENSMUST00000049411.5|Apex1|ENSMUSG00000035960.7|apurinic/apyrimidinic endonuclease 1 	ENSMUST00000136753.1|Apex1|ENSMUSG00000035960.7|apurinic/apyrimidinic endonuclease 1 	ENSMUST00000154288.1|Apex1|ENSMUSG00000035960.7|apurinic/apyrimidinic endonuclease 1
mm10_v2_chr5_+_104046980_104047154	0.0289892	Bhlhe40	ENSMUST00000134313.1|Nudt9|ENSMUSG00000029310.7|nudix (nucleoside diphosphate linked moiety X)-type motif 9
mm10_v2_chr18_-_20896078_20896078	0.0222698	Bhlhe40	ENSMUST00000025177.6|Trappc8|ENSMUSG00000033382.7|trafficking protein particle complex 8 	ENSMUST00000097658.1|Trappc8|ENSMUSG00000033382.7|trafficking protein particle complex 8
mm10_v2_chr11_+_75348433_75348560	0.0220321	Bhlhe40	ENSMUST00000044530.2|Smyd4|ENSMUSG00000018809.2|SET and MYND domain containing 4
mm10_v2_chr3_-_96727566_96727628	0.020967	Bhlhe40	ENSMUST00000029741.2|Polr3c|ENSMUSG00000028099.2|polymerase (RNA) III (DNA directed) polypeptide C
mm10_v2_chr6_-_35133731_35133742	0.0196292	Bhlhe40	ENSMUST00000114993.2|Cnot4|ENSMUSG00000038784.7|CCR4-NOT transcription complex, subunit 4 	ENSMUST00000114989.2|Cnot4|ENSMUSG00000038784.7|CCR4-NOT transcription complex, subunit 4 	ENSMUST00000044163.6|Cnot4|ENSMUSG00000038784.7|CCR4-NOT transcription complex, subunit 4
mm10_v2_chr3_-_96727453_96727505	0.014014	Bhlhe40	ENSMUST00000141377.1|Polr3c|ENSMUSG00000028099.2|polymerase (RNA) III (DNA directed) polypeptide C 	ENSMUST00000125183.1|Polr3c|ENSMUSG00000028099.2|polymerase (RNA) III (DNA directed) polypeptide C
mm10_v2_chr10_-_62486575_62486604	0.0116999	Bhlhe40	ENSMUST00000092473.3|Vps26a|ENSMUSG00000020078.9|vacuolar protein sorting 26 homolog A (yeast)
mm10_v2_chr11_+_3649494_3649494	0.00998247	Bhlhe40	ENSMUST00000093389.2|Morc2a|ENSMUSG00000034543.8|microrchidia 2A
mm10_v2_chr18_-_31609893_31609927	0.00691216	Bhlhe40	ENSMUST00000060396.6|Slc25a46|ENSMUSG00000024259.8|solute carrier family 25, member 46
