mm10_v2_chr6_-_23248264_23248390	7.45956	Brca1	ENSMUST00000031709.5|Fezf1|ENSMUSG00000029697.5|Fez family zinc finger 1
mm10_v2_chr11_+_44617310_44617336	2.09754	Brca1	ENSMUST00000081265.5|Ebf1|ENSMUSG00000057098.8|early B cell factor 1 	ENSMUST00000101326.3|Ebf1|ENSMUSG00000057098.8|early B cell factor 1 	ENSMUST00000109268.1|Ebf1|ENSMUSG00000057098.8|early B cell factor 1
mm10_v2_chr1_-_75278345_75278440	1.9176	Brca1	ENSMUST00000039534.4|Resp18|ENSMUSG00000033061.9|regulated endocrine-specific protein 18
mm10_v2_chr18_-_47333311_47333373	1.681	Brca1	ENSMUST00000126684.1|Sema6a|ENSMUSG00000019647.10|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A 	ENSMUST00000156422.1|Sema6a|ENSMUSG00000019647.10|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A
mm10_v2_chr7_-_144939823_144939869	1.37954	Brca1	ENSMUST00000093962.4|Ccnd1|ENSMUSG00000070348.4|cyclin D1
mm10_v2_chr11_+_97415527_97415538	1.37247	Brca1	ENSMUST00000121799.1|Arhgap23|ENSMUSG00000049807.10|Rho GTPase activating protein 23
mm10_v2_chr8_-_47990535_47990577	1.22772	Brca1	ENSMUST00000057561.7|Wwc2|ENSMUSG00000031563.7|WW, C2 and coiled-coil domain containing 2
mm10_v2_chr16_-_16829276_16829349	1.02329	Brca1	ENSMUST00000023468.5|Spag6|ENSMUSG00000022783.5|sperm associated antigen 6
mm10_v2_chr6_+_14901344_14901364	1.01641	Brca1	ENSMUST00000115477.1|Foxp2|ENSMUSG00000029563.10|forkhead box P2
mm10_v2_chr11_-_106998483_106998491	0.986861	Brca1	ENSMUST00000124541.1|Kpna2|ENSMUSG00000018362.8|karyopherin (importin) alpha 2
mm10_v2_chr10_-_33624587_33624769	0.904393	Brca1	ENSMUST00000160299.1|Clvs2|ENSMUSG00000019785.7|clavesin 2 	ENSMUST00000019920.6|Clvs2|ENSMUSG00000019785.7|clavesin 2
mm10_v2_chr16_+_44394771_44394804	0.860382	Brca1	ENSMUST00000099742.2|Wdr52|ENSMUSG00000071550.7|WD repeat domain 52
mm10_v2_chr1_+_66386968_66386999	0.821686	Brca1	ENSMUST00000145419.1|Map2|ENSMUSG00000015222.11|microtubule-associated protein 2
mm10_v2_chr14_-_67715585_67715681	0.790358	Brca1	ENSMUST00000163100.1|Cdca2|ENSMUSG00000048922.12|cell division cycle associated 2 	ENSMUST00000132705.1|Cdca2|ENSMUSG00000048922.12|cell division cycle associated 2 	ENSMUST00000124045.1|Cdca2|ENSMUSG00000048922.12|cell division cycle associated 2
mm10_v2_chr2_-_28916668_28916668	0.710637	Brca1	ENSMUST00000113847.1|Barhl1|ENSMUSG00000026805.8|BarH-like 1 (Drosophila)
mm10_v2_chr9_-_109082372_109082414	0.703812	Brca1	ENSMUST00000167504.1|Tma7|ENSMUSG00000091537.1|translational machinery associated 7 homolog (S. cerevisiae)
mm10_v2_chr13_-_49320219_49320311	0.679787	Brca1	ENSMUST00000110086.1|Fgd3|ENSMUSG00000037946.5|FYVE, RhoGEF and PH domain containing 3
mm10_v2_chr1_+_74791516_74791516	0.662882	Brca1	ENSMUST00000006718.8|Wnt10a|ENSMUSG00000026167.8|wingless related MMTV integration site 10a
mm10_v2_chr4_+_86053887_86053987	0.656446	Brca1	ENSMUST00000107178.2|Adamtsl1|ENSMUSG00000066113.9|ADAMTS-like 1 	ENSMUST00000048885.5|Adamtsl1|ENSMUSG00000066113.9|ADAMTS-like 1 	ENSMUST00000141889.1|Adamtsl1|ENSMUSG00000066113.9|ADAMTS-like 1 	ENSMUST00000120678.1|Adamtsl1|ENSMUSG00000066113.9|ADAMTS-like 1
mm10_v2_chr11_-_98625661_98625661	0.648648	Brca1	ENSMUST00000104933.1|Gm12355|ENSMUSG00000078134.1|predicted gene 12355
mm10_v2_chr17_-_70853482_70853546	0.638057	Brca1	ENSMUST00000118283.1|Tgif1|ENSMUSG00000047407.11|TGFB-induced factor homeobox 1
mm10_v2_chr5_-_123666682_123666695	0.633761	Brca1	ENSMUST00000149410.1|Clip1|ENSMUSG00000049550.11|CAP-GLY domain containing linker protein 1
mm10_v2_chr13_-_98891036_98891063	0.621841	Brca1	ENSMUST00000109399.2|Tnpo1|ENSMUSG00000009470.10|transportin 1
mm10_v2_chr12_+_52097737_52097775	0.611599	Brca1	ENSMUST00000040090.9|Nubpl|ENSMUSG00000035142.12|nucleotide binding protein-like
mm10_v2_chr12_-_10900296_10900318	0.600618	Brca1	ENSMUST00000085735.2|Pgk1-rs7|ENSMUSG00000066632.2|phosphoglycerate kinase-1, related sequence-7
mm10_v2_chr17_-_65613521_65613555	0.599003	Brca1	ENSMUST00000024897.8|Vapa|ENSMUSG00000024091.8|vesicle-associated membrane protein, associated protein A
mm10_v2_chr2_+_174330006_174330126	0.573076	Brca1	ENSMUST00000109085.1|Gnas|ENSMUSG00000027523.13|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus 	ENSMUST00000109087.1|Gnas|ENSMUSG00000027523.13|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus 	ENSMUST00000109084.1|Gnas|ENSMUSG00000027523.13|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus
mm10_v2_chr4_+_129058133_129058409	0.563277	Brca1	ENSMUST00000030584.4|Rnf19b|ENSMUSG00000028793.9|ring finger protein 19B 	ENSMUST00000168461.1|Rnf19b|ENSMUSG00000028793.9|ring finger protein 19B 	ENSMUST00000152565.1|Rnf19b|ENSMUSG00000028793.9|ring finger protein 19B
mm10_v2_chrX_-_101222426_101222563	0.561233	Brca1	ENSMUST00000120389.1|Snx12|ENSMUSG00000046032.10|sorting nexin 12 	ENSMUST00000156473.1|Snx12|ENSMUSG00000046032.10|sorting nexin 12 	ENSMUST00000077876.3|Snx12|ENSMUSG00000046032.10|sorting nexin 12
mm10_v2_chr19_-_10203880_10204169	0.533894	Brca1	ENSMUST00000142241.1|Fen1|ENSMUSG00000024742.9|flap structure specific endonuclease 1 	ENSMUST00000116542.2|Fen1|ENSMUSG00000024742.9|flap structure specific endonuclease 1 	ENSMUST00000025651.5|Fen1|ENSMUSG00000024742.9|flap structure specific endonuclease 1 	ENSMUST00000156291.1|Fen1|ENSMUSG00000024742.9|flap structure specific endonuclease 1
mm10_v2_chr5_+_15934685_15934696	0.49843	Brca1	ENSMUST00000078272.6|Cacna2d1|ENSMUSG00000040118.9|calcium channel, voltage-dependent, alpha2/delta subunit 1 	ENSMUST00000180204.1|Cacna2d1|ENSMUSG00000040118.9|calcium channel, voltage-dependent, alpha2/delta subunit 1 	ENSMUST00000167946.2|Cacna2d1|ENSMUSG00000040118.9|calcium channel, voltage-dependent, alpha2/delta subunit 1 	ENSMUST00000101581.3|Cacna2d1|ENSMUSG00000040118.9|calcium channel, voltage-dependent, alpha2/delta subunit 1 	ENSMUST00000039370.7|Cacna2d1|ENSMUSG00000040118.9|calcium channel, voltage-dependent, alpha2/delta subunit 1
mm10_v2_chr2_-_105399286_105399319	0.497982	Brca1	ENSMUST00000006128.6|Rcn1|ENSMUSG00000005973.6|reticulocalbin 1
mm10_v2_chr13_-_98890974_98891035	0.496341	Brca1	ENSMUST00000179301.1|Tnpo1|ENSMUSG00000009470.10|transportin 1 	ENSMUST00000179271.1|Tnpo1|ENSMUSG00000009470.10|transportin 1
mm10_v2_chr6_-_120357422_120357435	0.496336	Brca1	ENSMUST00000032283.5|Ccdc77|ENSMUSG00000030177.8|coiled-coil domain containing 77
mm10_v2_chr8_-_70700070_70700088	0.489126	Brca1	ENSMUST00000116172.1|Gm11175|ENSMUSG00000080058.1|predicted gene 11175
mm10_v2_chr13_-_107890059_107890073	0.488589	Brca1	ENSMUST00000105097.2|Zswim6|ENSMUSG00000032846.9|zinc finger SWIM-type containing 6
mm10_v2_chr4_+_12906838_12906881	0.482043	Brca1	ENSMUST00000143186.1|Triqk|ENSMUSG00000055963.6|triple QxxK/R motif containing 	ENSMUST00000183345.1|Triqk|ENSMUSG00000055963.6|triple QxxK/R motif containing
mm10_v2_chr15_-_97020322_97020336	0.481069	Brca1	ENSMUST00000166223.1|Slc38a4|ENSMUSG00000022464.7|solute carrier family 38, member 4
mm10_v2_chr3_+_87906321_87906356	0.478526	Brca1	ENSMUST00000005017.8|Hdgf|ENSMUSG00000004897.10|hepatoma-derived growth factor
mm10_v2_chr5_-_138187177_138187237	0.477892	Brca1	ENSMUST00000110937.1|Taf6|ENSMUSG00000036980.7|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor 	ENSMUST00000139276.1|Taf6|ENSMUSG00000036980.7|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor 	ENSMUST00000048698.7|Taf6|ENSMUSG00000036980.7|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor 	ENSMUST00000123415.1|Taf6|ENSMUSG00000036980.7|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor
mm10_v2_chr17_-_33685386_33685410	0.471131	Brca1	ENSMUST00000139302.1|Hnrnpm|ENSMUSG00000059208.8|heterogeneous nuclear ribonucleoprotein M 	ENSMUST00000087582.5|Hnrnpm|ENSMUSG00000059208.8|heterogeneous nuclear ribonucleoprotein M 	ENSMUST00000114385.2|Hnrnpm|ENSMUSG00000059208.8|heterogeneous nuclear ribonucleoprotein M
mm10_v2_chr13_-_100775844_100775899	0.465928	Brca1	ENSMUST00000075550.3|Cenph|ENSMUSG00000045273.8|centromere protein H
mm10_v2_chr3_-_61365951_61365951	0.437006	Brca1	ENSMUST00000066298.2|B430305J03Rik|ENSMUSG00000053706.2|RIKEN cDNA B430305J03 gene
mm10_v2_chr7_-_44375006_44375035	0.433524	Brca1	ENSMUST00000107933.1|1700008O03Rik|ENSMUSG00000008028.9|RIKEN cDNA 1700008O03 gene
mm10_v2_chr13_+_100651328_100651397	0.428859	Brca1	ENSMUST00000022135.8|Taf9|ENSMUSG00000078941.3|TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor 	ENSMUST00000084721.6|Taf9|ENSMUSG00000052293.8|TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor
mm10_v2_chr10_-_77902467_77902536	0.428361	Brca1	ENSMUST00000057608.4|Lrrc3|ENSMUSG00000051652.4|leucine rich repeat containing 3
mm10_v2_chr9_+_112234257_112234381	0.420363	Brca1	ENSMUST00000149308.3|2900079G21Rik|ENSMUSG00000087038.3|RIKEN cDNA 2900079G21 gene 	ENSMUST00000144424.2|2900079G21Rik|ENSMUSG00000087038.3|RIKEN cDNA 2900079G21 gene 	ENSMUST00000139552.2|2900079G21Rik|ENSMUSG00000087038.3|RIKEN cDNA 2900079G21 gene
mm10_v2_chr19_-_24225015_24225033	0.415068	Brca1	ENSMUST00000099558.4|Tjp2|ENSMUSG00000024812.9|tight junction protein 2
mm10_v2_chr6_-_120357342_120357400	0.414386	Brca1	ENSMUST00000163827.1|Ccdc77|ENSMUSG00000030177.8|coiled-coil domain containing 77
mm10_v2_chrX_+_150594420_150594478	0.406868	Brca1	ENSMUST00000112713.2|Pfkfb1|ENSMUSG00000025271.7|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1
mm10_v2_chr6_-_120357440_120357489	0.404269	Brca1	ENSMUST00000112703.1|Ccdc77|ENSMUSG00000030177.8|coiled-coil domain containing 77
mm10_v2_chr9_-_37657189_37657312	0.385446	Brca1	ENSMUST00000117654.1|Tbrg1|ENSMUSG00000011114.11|transforming growth factor beta regulated gene 1
mm10_v2_chr19_+_6047081_6047104	0.384932	Brca1	ENSMUST00000025723.8|Syvn1|ENSMUSG00000024807.11|synovial apoptosis inhibitor 1, synoviolin
mm10_v2_chr7_+_101896817_101896961	0.371499	Brca1	ENSMUST00000143835.1|Anapc15|ENSMUSG00000030649.11|anaphase prompoting complex C subunit 15
mm10_v2_chr7_-_102100227_102100258	0.368561	Brca1	ENSMUST00000106937.1|Art5|ENSMUSG00000070424.5|ADP-ribosyltransferase 5
mm10_v2_chr13_-_95891905_95891929	0.359148	Brca1	ENSMUST00000068603.6|Iqgap2|ENSMUSG00000021676.9|IQ motif containing GTPase activating protein 2
mm10_v2_chr17_-_47611449_47611544	0.353529	Brca1	ENSMUST00000024783.8|Bysl|ENSMUSG00000023988.8|bystin-like
mm10_v2_chr19_+_45560569_45560644	0.345744	Brca1	ENSMUST00000047057.7|Dpcd|ENSMUSG00000041035.7|deleted in primary ciliary dyskinesia
mm10_v2_chr14_+_20674311_20674371	0.339323	Brca1	ENSMUST00000048657.8|Sec24c|ENSMUSG00000039367.9|Sec24 related gene family, member C (S. cerevisiae)
mm10_v2_chr17_-_6655939_6655939	0.330156	Brca1	ENSMUST00000179554.1|Dynlt1f|ENSMUSG00000095677.1|dynein light chain Tctex-type 1F
mm10_v2_chr3_+_109573907_109573990	0.326899	Brca1	ENSMUST00000106576.2|Vav3|ENSMUSG00000033721.10|vav 3 oncogene
mm10_v2_chr3_+_96172327_96172338	0.324593	Brca1	ENSMUST00000076372.4|Sf3b4|ENSMUSG00000068856.3|splicing factor 3b, subunit 4
mm10_v2_chr11_-_101171302_101171353	0.324489	Brca1	ENSMUST00000164474.1|Plekhh3|ENSMUSG00000035172.9|pleckstrin homology domain containing, family H (with MyTH4 domain) member 3 	ENSMUST00000043397.7|Plekhh3|ENSMUSG00000035172.9|pleckstrin homology domain containing, family H (with MyTH4 domain) member 3
mm10_v2_chr7_-_64872993_64873037	0.319855	Brca1	ENSMUST00000094331.2|Ndnl2|ENSMUSG00000070520.2|necdin-like 2
mm10_v2_chr7_-_133122615_133122762	0.313752	Brca1	ENSMUST00000167218.1|Ctbp2|ENSMUSG00000030970.10|C-terminal binding protein 2
mm10_v2_chr19_+_44562841_44562879	0.309112	Brca1	ENSMUST00000040455.4|Hif1an|ENSMUSG00000036450.4|hypoxia-inducible factor 1, alpha subunit inhibitor
mm10_v2_chrX_+_169685191_169685250	0.306624	Brca1	ENSMUST00000112104.1|Mid1|ENSMUSG00000035299.10|midline 1 	ENSMUST00000112107.1|Mid1|ENSMUSG00000035299.10|midline 1
mm10_v2_chr3_-_138131356_138131381	0.305889	Brca1	ENSMUST00000029805.8|Mttp|ENSMUSG00000028158.8|microsomal triglyceride transfer protein
mm10_v2_chr13_+_93304940_93305278	0.304801	Brca1	ENSMUST00000109497.1|Homer1|ENSMUSG00000007617.11|homer homolog 1 (Drosophila) 	ENSMUST00000109498.1|Homer1|ENSMUSG00000007617.11|homer homolog 1 (Drosophila) 	ENSMUST00000060490.4|Homer1|ENSMUSG00000007617.11|homer homolog 1 (Drosophila) 	ENSMUST00000109492.1|Homer1|ENSMUSG00000007617.11|homer homolog 1 (Drosophila) 	ENSMUST00000109496.1|Homer1|ENSMUSG00000007617.11|homer homolog 1 (Drosophila) 	ENSMUST00000109495.1|Homer1|ENSMUSG00000007617.11|homer homolog 1 (Drosophila)
mm10_v2_chr5_+_138187485_138187521	0.302197	Brca1	ENSMUST00000110934.2|Cnpy4|ENSMUSG00000036968.9|canopy 4 homolog (zebrafish)
mm10_v2_chr5_-_135064063_135064116	0.295857	Brca1	ENSMUST00000111205.1|Wbscr22|ENSMUSG00000005378.11|Williams Beuren syndrome chromosome region 22 	ENSMUST00000141309.1|Wbscr22|ENSMUSG00000005378.11|Williams Beuren syndrome chromosome region 22
mm10_v2_chr4_-_116708312_116708406	0.293275	Brca1	ENSMUST00000030453.4|Mmachc|ENSMUSG00000028690.4|methylmalonic aciduria cblC type, with homocystinuria
mm10_v2_chr19_+_36083696_36083736	0.293004	Brca1	ENSMUST00000025714.7|Rpp30|ENSMUSG00000024800.7|ribonuclease P/MRP 30 subunit
mm10_v2_chr2_-_25224653_25224702	0.283184	Brca1	ENSMUST00000043584.4|Tubb4b|ENSMUSG00000036752.4|tubulin, beta 4B class IVB
mm10_v2_chrX_+_74309089_74309161	0.275069	Brca1	ENSMUST00000130581.1|Gdi1|ENSMUSG00000015291.4|guanosine diphosphate (GDP) dissociation inhibitor 1
mm10_v2_chr11_-_30198232_30198261	0.274639	Brca1	ENSMUST00000102838.3|Sptbn1|ENSMUSG00000020315.12|spectrin beta, non-erythrocytic 1
mm10_v2_chr11_+_93886157_93886219	0.274521	Brca1	ENSMUST00000063718.4|Mbtd1|ENSMUSG00000059474.7|mbt domain containing 1 	ENSMUST00000107854.2|Mbtd1|ENSMUSG00000059474.7|mbt domain containing 1
mm10_v2_chrX_+_150589907_150589996	0.273236	Brca1	ENSMUST00000080884.4|Pfkfb1|ENSMUSG00000025271.7|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1
mm10_v2_chr5_+_136953246_136953406	0.270022	Brca1	ENSMUST00000111094.1|Fis1|ENSMUSG00000019054.7|fission 1 (mitochondrial outer membrane) homolog (yeast) 	ENSMUST00000111097.1|Fis1|ENSMUSG00000019054.7|fission 1 (mitochondrial outer membrane) homolog (yeast)
mm10_v2_chr9_+_59589288_59589353	0.265576	Brca1	ENSMUST00000121266.1|Celf6|ENSMUSG00000032297.5|CUGBP, Elav-like family member 6 	ENSMUST00000118164.1|Celf6|ENSMUSG00000032297.5|CUGBP, Elav-like family member 6
mm10_v2_chr1_+_192190771_192190821	0.262505	Brca1	ENSMUST00000078470.5|Kcnh1|ENSMUSG00000058248.6|potassium voltage-gated channel, subfamily H (eag-related), member 1 	ENSMUST00000110844.1|Kcnh1|ENSMUSG00000058248.6|potassium voltage-gated channel, subfamily H (eag-related), member 1
mm10_v2_chr2_-_152831665_152831735	0.259851	Brca1	ENSMUST00000156688.1|Bcl2l1|ENSMUSG00000007659.12|BCL2-like 1 	ENSMUST00000007803.5|Bcl2l1|ENSMUSG00000007659.12|BCL2-like 1
mm10_v2_chr17_+_6430112_6430204	0.253996	Brca1	ENSMUST00000179569.1|Dynlt1b|ENSMUSG00000096255.1|dynein light chain Tctex-type 1B
mm10_v2_chrX_-_64276937_64277002	0.252438	Brca1	ENSMUST00000114679.1|Slitrk4|ENSMUSG00000046699.8|SLIT and NTRK-like family, member 4 	ENSMUST00000069926.7|Slitrk4|ENSMUSG00000046699.8|SLIT and NTRK-like family, member 4
mm10_v2_chr4_+_148000722_148000754	0.248484	Brca1	ENSMUST00000103230.4|Nppa|ENSMUSG00000041616.9|natriuretic peptide type A
mm10_v2_chr17_+_7945653_7945653	0.247589	Brca1	ENSMUST00000097423.2|Rsph3a|ENSMUSG00000073471.2|radial spoke 3A homolog (Chlamydomonas)
mm10_v2_chr14_-_52305056_52305130	0.243467	Brca1	ENSMUST00000174853.1|Mettl3|ENSMUSG00000022160.11|methyltransferase like 3 	ENSMUST00000022767.9|Mettl3|ENSMUSG00000022160.11|methyltransferase like 3
mm10_v2_chr15_-_82016134_82016170	0.227513	Brca1	ENSMUST00000152227.1|Desi1|ENSMUSG00000022472.10|desumoylating isopeptidase 1
mm10_v2_chr11_+_59306920_59306935	0.225734	Brca1	ENSMUST00000000128.3|Wnt9a|ENSMUSG00000000126.5|wingless-type MMTV integration site 9A 	ENSMUST00000108783.3|Wnt9a|ENSMUSG00000000126.5|wingless-type MMTV integration site 9A
mm10_v2_chr7_-_30072801_30072924	0.219495	Brca1	ENSMUST00000183115.1|Zfp82|ENSMUSG00000098022.1|zinc finger protein 82 	ENSMUST00000182919.1|Zfp82|ENSMUSG00000098022.1|zinc finger protein 82 	ENSMUST00000183190.1|Zfp82|ENSMUSG00000098022.1|zinc finger protein 82 	ENSMUST00000080834.8|Zfp82|ENSMUSG00000098022.1|zinc finger protein 82
mm10_v2_chr15_+_102460076_102460108	0.218202	Brca1	ENSMUST00000164688.1|Prr13|ENSMUSG00000023048.7|proline rich 13
mm10_v2_chr6_-_125191535_125191620	0.209533	Brca1	ENSMUST00000043848.4|Ncapd2|ENSMUSG00000038252.7|non-SMC condensin I complex, subunit D2
mm10_v2_chr8_+_25017211_25017305	0.209222	Brca1	ENSMUST00000033961.5|Tm2d2|ENSMUSG00000031556.5|TM2 domain containing 2
mm10_v2_chr2_+_167932327_167932379	0.194627	Brca1	ENSMUST00000029053.7|Ptpn1|ENSMUSG00000027540.7|protein tyrosine phosphatase, non-receptor type 1
mm10_v2_chr3_-_95882031_95882074	0.194284	Brca1	ENSMUST00000161994.1|Gm129|ENSMUSG00000038550.4|predicted gene 129
mm10_v2_chr12_-_69159109_69159186	0.190113	Brca1	ENSMUST00000037023.8|Rps29|ENSMUSG00000034892.8|ribosomal protein S29
mm10_v2_chr9_+_108392820_108392843	0.18721	Brca1	ENSMUST00000035234.4|1700102P08Rik|ENSMUSG00000032611.4|RIKEN cDNA 1700102P08 gene
mm10_v2_chr16_+_22009471_22009543	0.185775	Brca1	ENSMUST00000023561.7|Senp2|ENSMUSG00000022855.8|SUMO/sentrin specific peptidase 2
mm10_v2_chr4_+_43631935_43631935	0.18508	Brca1	ENSMUST00000030191.8|Npr2|ENSMUSG00000028469.9|natriuretic peptide receptor 2
mm10_v2_chr5_+_146833106_146833210	0.183037	Brca1	ENSMUST00000075453.2|Rpl21|ENSMUSG00000041453.6|ribosomal protein L21 	ENSMUST00000099272.2|Rpl21|ENSMUSG00000041453.6|ribosomal protein L21
mm10_v2_chr5_+_72914264_72914304	0.181467	Brca1	ENSMUST00000144843.1|Slain2|ENSMUSG00000036087.12|SLAIN motif family, member 2
mm10_v2_chrM_+_9452_9468	0.178159	Brca1	ENSMUST00000082411.1|mt-Nd3|ENSMUSG00000064360.1|mitochondrially encoded NADH dehydrogenase 3
mm10_v2_chr17_-_15498263_15498276	0.173634	Brca1	ENSMUST00000014913.9|Psmb1|ENSMUSG00000014769.9|proteasome (prosome, macropain) subunit, beta type 1
mm10_v2_chr9_-_112187766_112187862	0.16866	Brca1	ENSMUST00000111872.2|Arpp21|ENSMUSG00000032503.11|cyclic AMP-regulated phosphoprotein, 21 	ENSMUST00000164754.2|Arpp21|ENSMUSG00000032503.11|cyclic AMP-regulated phosphoprotein, 21
mm10_v2_chr4_+_10874498_10874607	0.166023	Brca1	ENSMUST00000080517.7|2610301B20Rik|ENSMUSG00000059482.9|RIKEN cDNA 2610301B20 gene 	ENSMUST00000101504.2|2610301B20Rik|ENSMUSG00000059482.9|RIKEN cDNA 2610301B20 gene
mm10_v2_chr4_+_43632185_43632185	0.160364	Brca1	ENSMUST00000107874.2|Npr2|ENSMUSG00000028469.9|natriuretic peptide receptor 2
mm10_v2_chr11_-_69920581_69920630	0.15497	Brca1	ENSMUST00000108610.1|Eif5a|ENSMUSG00000078812.4|eukaryotic translation initiation factor 5A
mm10_v2_chr12_+_103388656_103388723	0.14877	Brca1	ENSMUST00000101094.2|Otub2|ENSMUSG00000021203.9|OTU domain, ubiquitin aldehyde binding 2 	ENSMUST00000021620.6|Otub2|ENSMUSG00000021203.9|OTU domain, ubiquitin aldehyde binding 2
mm10_v2_chr11_-_104550460_104550560	0.147544	Brca1	ENSMUST00000106961.1|Cdc27|ENSMUSG00000020687.7|cell division cycle 27 	ENSMUST00000093923.2|Cdc27|ENSMUSG00000020687.7|cell division cycle 27
mm10_v2_chr12_+_87266696_87266760	0.14313	Brca1	ENSMUST00000021425.6|Ahsa1|ENSMUSG00000021037.6|AHA1, activator of heat shock protein ATPase 1
mm10_v2_chr19_-_32466575_32466575	0.142649	Brca1	ENSMUST00000078034.3|Rpl9-ps6|ENSMUSG00000062456.3|ribosomal protein L9, pseudogene 6
mm10_v2_chr7_-_102099932_102099943	0.135817	Brca1	ENSMUST00000106934.1|Art5|ENSMUSG00000070424.5|ADP-ribosyltransferase 5
mm10_v2_chr17_-_6948283_6948356	0.132095	Brca1	ENSMUST00000024572.9|Rsph3b|ENSMUSG00000023806.9|radial spoke 3B homolog (Chlamydomonas)
mm10_v2_chr7_+_51878967_51879000	0.131105	Brca1	ENSMUST00000051912.6|Gas2|ENSMUSG00000030498.8|growth arrest specific 2
mm10_v2_chr11_+_97703394_97703455	0.130904	Brca1	ENSMUST00000103147.4|Psmb3|ENSMUSG00000069744.7|proteasome (prosome, macropain) subunit, beta type 3
mm10_v2_chr12_-_108894116_108894174	0.128788	Brca1	ENSMUST00000109848.3|Wars|ENSMUSG00000021266.10|tryptophanyl-tRNA synthetase
mm10_v2_chr18_-_15063560_15063617	0.127717	Brca1	ENSMUST00000168989.1|Kctd1|ENSMUSG00000036225.8|potassium channel tetramerisation domain containing 1
mm10_v2_chr19_-_10525201_10525214	0.127466	Brca1	ENSMUST00000025570.6|Sdhaf2|ENSMUSG00000024668.7|succinate dehydrogenase complex assembly factor 2
mm10_v2_chr12_-_24493656_24493656	0.122342	Brca1	ENSMUST00000073088.2|Gm16372|ENSMUSG00000057160.2|predicted pseudogene 16372
mm10_v2_chr13_+_24943144_24943164	0.120567	Brca1	ENSMUST00000021773.5|Gpld1|ENSMUSG00000021340.6|glycosylphosphatidylinositol specific phospholipase D1
mm10_v2_chr4_-_98817537_98817706	0.119932	Brca1	ENSMUST00000102790.3|Kank4|ENSMUSG00000035407.8|KN motif and ankyrin repeat domains 4
mm10_v2_chr12_-_84617326_84617466	0.117676	Brca1	ENSMUST00000021666.4|Abcd4|ENSMUSG00000021240.5|ATP-binding cassette, sub-family D (ALD), member 4
mm10_v2_chr5_+_72914554_72914625	0.115877	Brca1	ENSMUST00000143829.1|Slain2|ENSMUSG00000036087.12|SLAIN motif family, member 2
mm10_v2_chr2_-_91183017_91183060	0.112099	Brca1	ENSMUST00000066420.5|Madd|ENSMUSG00000040687.10|MAP-kinase activating death domain
mm10_v2_chr11_-_104550392_104550419	0.111374	Brca1	ENSMUST00000106962.2|Cdc27|ENSMUSG00000020687.7|cell division cycle 27
mm10_v2_chr6_-_122340525_122340561	0.104666	Brca1	ENSMUST00000112600.2|Phc1|ENSMUSG00000040669.8|polyhomeotic-like 1 (Drosophila)
mm10_v2_chr5_-_21701332_21701404	0.104578	Brca1	ENSMUST00000115217.1|Napepld|ENSMUSG00000044968.10|N-acyl phosphatidylethanolamine phospholipase D 	ENSMUST00000060899.8|Napepld|ENSMUSG00000044968.10|N-acyl phosphatidylethanolamine phospholipase D
mm10_v2_chr5_+_146832890_146832947	0.102792	Brca1	ENSMUST00000035983.5|Rpl21|ENSMUSG00000041453.6|ribosomal protein L21
mm10_v2_chr11_-_102230127_102230166	0.101976	Brca1	ENSMUST00000107150.1|Hdac5|ENSMUSG00000008855.11|histone deacetylase 5 	ENSMUST00000156337.1|Hdac5|ENSMUSG00000008855.11|histone deacetylase 5 	ENSMUST00000107151.2|Hdac5|ENSMUSG00000008855.11|histone deacetylase 5 	ENSMUST00000107152.2|Hdac5|ENSMUSG00000008855.11|histone deacetylase 5
mm10_v2_chr2_-_34870921_34870980	0.0980323	Brca1	ENSMUST00000028225.5|Psmd5|ENSMUSG00000026869.6|proteasome (prosome, macropain) 26S subunit, non-ATPase, 5
mm10_v2_chr14_-_54864055_54864158	0.0879342	Brca1	ENSMUST00000142283.2|Homez|ENSMUSG00000057156.9|homeodomain leucine zipper-encoding gene
mm10_v2_chr6_-_122340499_122340510	0.0860779	Brca1	ENSMUST00000160843.1|Phc1|ENSMUSG00000040669.8|polyhomeotic-like 1 (Drosophila)
mm10_v2_chr19_-_7295394_7295468	0.0818733	Brca1	ENSMUST00000025921.8|Mark2|ENSMUSG00000024969.9|MAP/microtubule affinity-regulating kinase 2
mm10_v2_chr19_-_12765447_12765632	0.0806233	Brca1	ENSMUST00000112933.1|Cntf|ENSMUSG00000079415.2|ciliary neurotrophic factor
mm10_v2_chr1_+_182124737_182124800	0.0797775	Brca1	ENSMUST00000111018.1|Srp9|ENSMUSG00000026511.6|signal recognition particle 9 	ENSMUST00000027792.5|Srp9|ENSMUSG00000026511.6|signal recognition particle 9
mm10_v2_chrM_+_7759_7927	0.0796764	Brca1	ENSMUST00000082407.1|mt-Atp8|ENSMUSG00000064356.3|mitochondrially encoded ATP synthase 8 	ENSMUST00000082408.1|mt-Atp6|ENSMUSG00000064357.1|mitochondrially encoded ATP synthase 6
mm10_v2_chr17_+_71204647_71204693	0.0768051	Brca1	ENSMUST00000126681.1|Lpin2|ENSMUSG00000024052.11|lipin 2
mm10_v2_chr10_-_128923948_128924035	0.0765566	Brca1	ENSMUST00000131271.1|Bloc1s1|ENSMUSG00000090247.1|biogenesis of lysosome-related organelles complex-1, subunit 1
mm10_v2_chr15_-_27681498_27681554	0.073176	Brca1	ENSMUST00000100739.3|Fam105a|ENSMUSG00000056069.8|family with sequence similarity 105, member A
mm10_v2_chr10_-_128923439_128923545	0.072617	Brca1	ENSMUST00000153731.1|Bloc1s1|ENSMUSG00000090247.1|biogenesis of lysosome-related organelles complex-1, subunit 1 	ENSMUST00000026405.3|Bloc1s1|ENSMUSG00000090247.1|biogenesis of lysosome-related organelles complex-1, subunit 1
mm10_v2_chr6_+_100833606_100833663	0.072514	Brca1	ENSMUST00000063854.4|Ppp4r2|ENSMUSG00000052144.6|protein phosphatase 4, regulatory subunit 2
mm10_v2_chr15_+_10952332_10952364	0.0699286	Brca1	ENSMUST00000022853.8|C1qtnf3|ENSMUSG00000058914.6|C1q and tumor necrosis factor related protein 3 	ENSMUST00000110523.1|C1qtnf3|ENSMUSG00000058914.6|C1q and tumor necrosis factor related protein 3
mm10_v2_chr11_+_82035569_82035585	0.0697934	Brca1	ENSMUST00000000193.5|Ccl2|ENSMUSG00000035385.5|chemokine (C-C motif) ligand 2
mm10_v2_chr11_-_102230091_102230124	0.0691166	Brca1	ENSMUST00000008999.5|Hdac5|ENSMUSG00000008855.11|histone deacetylase 5
mm10_v2_chr7_-_4996095_4996116	0.0685474	Brca1	ENSMUST00000108572.1|Zfp579|ENSMUSG00000051550.10|zinc finger protein 579
mm10_v2_chr2_-_91182848_91182933	0.067128	Brca1	ENSMUST00000111370.2|Madd|ENSMUSG00000040687.10|MAP-kinase activating death domain 	ENSMUST00000111376.1|Madd|ENSMUSG00000040687.10|MAP-kinase activating death domain 	ENSMUST00000099723.2|Madd|ENSMUSG00000040687.10|MAP-kinase activating death domain
mm10_v2_chr17_+_33909481_33909576	0.0669371	Brca1	ENSMUST00000173626.1|Daxx|ENSMUSG00000002307.9|Fas death domain-associated protein 	ENSMUST00000174541.1|Daxx|ENSMUSG00000002307.9|Fas death domain-associated protein
mm10_v2_chr7_-_126503408_126503477	0.0668968	Brca1	ENSMUST00000040202.8|Atxn2l|ENSMUSG00000032637.9|ataxin 2-like
mm10_v2_chr3_-_95882232_95882251	0.0644534	Brca1	ENSMUST00000161866.1|Gm129|ENSMUSG00000038550.4|predicted gene 129
mm10_v2_chr12_-_99393010_99393090	0.0640415	Brca1	ENSMUST00000177451.1|Foxn3|ENSMUSG00000033713.5|forkhead box N3
mm10_v2_chr19_+_46152505_46152514	0.0605259	Brca1	ENSMUST00000026254.7|Gbf1|ENSMUSG00000025224.8|golgi-specific brefeldin A-resistance factor 1
mm10_v2_chr18_+_36952621_36952766	0.0603727	Brca1	ENSMUST00000115661.2|Pcdha2|ENSMUSG00000007440.8|protocadherin alpha 2
mm10_v2_chr7_+_24370255_24370312	0.0603264	Brca1	ENSMUST00000171904.1|Kcnn4|ENSMUSG00000054342.7|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4
mm10_v2_chr13_+_55152640_55152640	0.0583746	Brca1	ENSMUST00000005452.5|Fgfr4|ENSMUSG00000005320.9|fibroblast growth factor receptor 4
mm10_v2_chr13_+_100651607_100651631	0.0550057	Brca1	ENSMUST00000167256.1|Taf9|ENSMUSG00000052293.8|TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor
mm10_v2_chr11_-_11890368_11890379	0.0545692	Brca1	ENSMUST00000155690.1|Ddc|ENSMUSG00000020182.10|dopa decarboxylase
mm10_v2_chr17_+_8165501_8165540	0.0529959	Brca1	ENSMUST00000097419.3|Fgfr1op|ENSMUSG00000069135.5|Fgfr1 oncogene partner 	ENSMUST00000024636.8|Fgfr1op|ENSMUSG00000069135.5|Fgfr1 oncogene partner
mm10_v2_chr7_+_123377982_123378086	0.0501868	Brca1	ENSMUST00000033025.5|Lcmt1|ENSMUSG00000030763.6|leucine carboxyl methyltransferase 1
mm10_v2_chr18_+_7869707_7869737	0.0500648	Brca1	ENSMUST00000166062.1|Wac|ENSMUSG00000024283.8|WW domain containing adaptor with coiled-coil 	ENSMUST00000169010.1|Wac|ENSMUSG00000024283.8|WW domain containing adaptor with coiled-coil
mm10_v2_chr5_-_115158169_115158180	0.0475599	Brca1	ENSMUST00000053271.5|Mlec|ENSMUSG00000048578.7|malectin 	ENSMUST00000112121.1|Mlec|ENSMUSG00000048578.7|malectin
mm10_v2_chr5_+_147077050_147077050	0.0470983	Brca1	ENSMUST00000050970.3|Polr1d|ENSMUSG00000029642.7|polymerase (RNA) I polypeptide D
mm10_v2_chr2_-_9883993_9883993	0.0461036	Brca1	ENSMUST00000114915.2|9230102O04Rik|ENSMUSG00000079602.2|RIKEN cDNA 9230102O04 gene
mm10_v2_chr10_+_69925766_69925786	0.0457149	Brca1	ENSMUST00000182269.1|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial 	ENSMUST00000183261.1|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial 	ENSMUST00000183074.1|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial
mm10_v2_chr18_+_42275353_42275392	0.0372703	Brca1	ENSMUST00000046972.7|Rbm27|ENSMUSG00000024491.9|RNA binding motif protein 27 	ENSMUST00000091920.5|Rbm27|ENSMUSG00000024491.9|RNA binding motif protein 27
mm10_v2_chr13_+_55714624_55714650	0.0355975	Brca1	ENSMUST00000021959.9|Txndc15|ENSMUSG00000021497.9|thioredoxin domain containing 15
mm10_v2_chr17_+_35841668_35841683	0.0328017	Brca1	ENSMUST00000174124.1|Mdc1|ENSMUSG00000061607.8|mediator of DNA damage checkpoint 1
mm10_v2_chr6_+_48647224_48647298	0.0313845	Brca1	ENSMUST00000078223.3|Gimap8|ENSMUSG00000064262.5|GTPase, IMAP family member 8
mm10_v2_chr3_-_100489324_100489354	0.0240741	Brca1	ENSMUST00000061455.8|Fam46c|ENSMUSG00000044468.8|family with sequence similarity 46, member C
mm10_v2_chr7_+_5080214_5080298	0.0153542	Brca1	ENSMUST00000098845.3|Epn1|ENSMUSG00000035203.9|epsin 1 	ENSMUST00000146317.1|Epn1|ENSMUSG00000035203.9|epsin 1 	ENSMUST00000153169.1|Epn1|ENSMUSG00000035203.9|epsin 1 	ENSMUST00000045277.6|Epn1|ENSMUSG00000035203.9|epsin 1
mm10_v2_chr8_-_95853501_95853539	0.0145579	Brca1	ENSMUST00000040481.3|Slc38a7|ENSMUSG00000036534.5|solute carrier family 38, member 7
mm10_v2_chr10_-_13388830_13388970	0.0143991	Brca1	ENSMUST00000079698.5|Phactr2|ENSMUSG00000062866.9|phosphatase and actin regulator 2
mm10_v2_chr7_-_4996044_4996094	0.0140543	Brca1	ENSMUST00000162502.1|Zfp579|ENSMUSG00000051550.10|zinc finger protein 579
mm10_v2_chr4_-_41464816_41464892	0.0118109	Brca1	ENSMUST00000108055.2|Kif24|ENSMUSG00000028438.10|kinesin family member 24 	ENSMUST00000154535.1|Kif24|ENSMUSG00000028438.10|kinesin family member 24 	ENSMUST00000030148.5|Kif24|ENSMUSG00000028438.10|kinesin family member 24
mm10_v2_chr10_+_69534039_69534070	0.0117962	Brca1	ENSMUST00000182557.1|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial
mm10_v2_chr7_-_113369326_113369395	0.0113654	Brca1	ENSMUST00000047091.7|Btbd10|ENSMUSG00000038187.8|BTB (POZ) domain containing 10 	ENSMUST00000119278.1|Btbd10|ENSMUSG00000038187.8|BTB (POZ) domain containing 10
mm10_v2_chr3_+_5218516_5218544	0.0107394	Brca1	ENSMUST00000175866.1|Zfhx4|ENSMUSG00000025255.12|zinc finger homeodomain 4
mm10_v2_chr11_-_50325599_50325673	0.00192084	Brca1	ENSMUST00000179865.1|Canx|ENSMUSG00000020368.9|calnexin 	ENSMUST00000020637.8|Canx|ENSMUSG00000020368.9|calnexin
