mm10_v2_chr4_+_144892813_144892835	3.97208	Foxp2_Foxp3	ENSMUST00000105744.1|Dhrs3|ENSMUSG00000066026.8|dehydrogenase/reductase (SDR family) member 3 	ENSMUST00000171001.1|Dhrs3|ENSMUSG00000066026.8|dehydrogenase/reductase (SDR family) member 3
mm10_v2_chr4_+_144893077_144893103	3.28034	Foxp2_Foxp3	ENSMUST00000154208.1|Dhrs3|ENSMUSG00000066026.8|dehydrogenase/reductase (SDR family) member 3
mm10_v2_chr4_+_144893127_144893151	2.84804	Foxp2_Foxp3	ENSMUST00000142808.1|Dhrs3|ENSMUSG00000066026.8|dehydrogenase/reductase (SDR family) member 3
mm10_v2_chr8_+_66386292_66386308	2.56451	Foxp2_Foxp3	ENSMUST00000039540.5|March1|ENSMUSG00000036469.10|membrane-associated ring finger (C3HC4) 1 	ENSMUST00000110253.2|March1|ENSMUSG00000036469.10|membrane-associated ring finger (C3HC4) 1
mm10_v2_chr6_+_141524379_141524449	2.43753	Foxp2_Foxp3	ENSMUST00000032362.9|Slco1c1|ENSMUSG00000030235.11|solute carrier organic anion transporter family, member 1c1
mm10_v2_chr3_+_5218516_5218544	2.23148	Foxp2_Foxp3	ENSMUST00000175866.1|Zfhx4|ENSMUSG00000025255.12|zinc finger homeodomain 4
mm10_v2_chr3_+_5218589_5218614	2.03444	Foxp2_Foxp3	ENSMUST00000177488.1|Zfhx4|ENSMUSG00000025255.12|zinc finger homeodomain 4
mm10_v2_chr3_+_5218546_5218561	2.01364	Foxp2_Foxp3	ENSMUST00000026284.6|Zfhx4|ENSMUSG00000025255.12|zinc finger homeodomain 4
mm10_v2_chr16_-_22439719_22439733	1.95865	Foxp2_Foxp3	ENSMUST00000079601.6|Etv5|ENSMUSG00000013089.9|ets variant gene 5
mm10_v2_chr18_+_5593566_5593602	1.89494	Foxp2_Foxp3	ENSMUST00000160910.1|Zeb1|ENSMUSG00000024238.7|zinc finger E-box binding homeobox 1
mm10_v2_chr7_+_141476374_141476400	1.80443	Foxp2_Foxp3	ENSMUST00000117634.1|Tspan4|ENSMUSG00000025511.8|tetraspanin 4
mm10_v2_chr18_+_69344503_69344530	1.63675	Foxp2_Foxp3	ENSMUST00000114985.3|Tcf4|ENSMUSG00000053477.9|transcription factor 4
mm10_v2_chr1_-_128592284_128592307	1.59485	Foxp2_Foxp3	ENSMUST00000052172.6|Cxcr4|ENSMUSG00000045382.6|chemokine (C-X-C motif) receptor 4 	ENSMUST00000142893.1|Cxcr4|ENSMUSG00000045382.6|chemokine (C-X-C motif) receptor 4
mm10_v2_chr3_-_52104891_52104922	1.59448	Foxp2_Foxp3	ENSMUST00000121440.1|Maml3|ENSMUSG00000061143.9|mastermind like 3 (Drosophila)
mm10_v2_chr4_-_87806296_87806325	1.59349	Foxp2_Foxp3	ENSMUST00000126353.1|Mllt3|ENSMUSG00000028496.11|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3 	ENSMUST00000149357.1|Mllt3|ENSMUSG00000028496.11|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3
mm10_v2_chr6_+_30541582_30541650	1.51073	Foxp2_Foxp3	ENSMUST00000096066.4|Cpa2|ENSMUSG00000071553.4|carboxypeptidase A2, pancreatic
mm10_v2_chr1_-_190170178_190170237	1.49697	Foxp2_Foxp3	ENSMUST00000177288.1|Prox1|ENSMUSG00000010175.7|prospero-related homeobox 1
mm10_v2_chr11_+_3332426_3332460	1.47191	Foxp2_Foxp3	ENSMUST00000136474.1|Pik3ip1|ENSMUSG00000034614.8|phosphoinositide-3-kinase interacting protein 1
mm10_v2_chr1_-_170110491_170110532	1.43668	Foxp2_Foxp3	ENSMUST00000027985.2|Ddr2|ENSMUSG00000026674.3|discoidin domain receptor family, member 2
mm10_v2_chr10_-_92162753_92162765	1.41663	Foxp2_Foxp3	ENSMUST00000182197.1|Rmst|ENSMUSG00000097348.2|rhabdomyosarcoma 2 associated transcript (non-coding RNA)
mm10_v2_chr14_-_51913393_51913488	1.40078	Foxp2_Foxp3	ENSMUST00000004673.7|Ndrg2|ENSMUSG00000004558.8|N-myc downstream regulated gene 2 	ENSMUST00000111632.3|Ndrg2|ENSMUSG00000004558.8|N-myc downstream regulated gene 2
mm10_v2_chr3_+_51693771_51693771	1.28545	Foxp2_Foxp3	ENSMUST00000099104.2|Gm10729|ENSMUSG00000074603.2|predicted gene 10729
mm10_v2_chr4_-_53159885_53159900	1.27916	Foxp2_Foxp3	ENSMUST00000030010.3|Abca1|ENSMUSG00000015243.4|ATP-binding cassette, sub-family A (ABC1), member 1
mm10_v2_chr15_+_3270767_3271006	1.17319	Foxp2_Foxp3	ENSMUST00000082424.4|Sepp1|ENSMUSG00000064373.5|selenoprotein P, plasma, 1 	ENSMUST00000159158.1|Sepp1|ENSMUSG00000064373.5|selenoprotein P, plasma, 1 	ENSMUST00000159216.1|Sepp1|ENSMUSG00000064373.5|selenoprotein P, plasma, 1 	ENSMUST00000160311.1|Sepp1|ENSMUSG00000064373.5|selenoprotein P, plasma, 1
mm10_v2_chr16_-_22439570_22439603	1.1517	Foxp2_Foxp3	ENSMUST00000170393.1|Etv5|ENSMUSG00000013089.9|ets variant gene 5
mm10_v2_chr6_-_39725193_39725357	1.13039	Foxp2_Foxp3	ENSMUST00000101497.3|Braf|ENSMUSG00000002413.9|Braf transforming gene
mm10_v2_chr1_-_64956807_64956824	1.12967	Foxp2_Foxp3	ENSMUST00000097713.1|Plekhm3|ENSMUSG00000051344.7|pleckstrin homology domain containing, family M, member 3
mm10_v2_chr2_-_60125651_60125775	1.09427	Foxp2_Foxp3	ENSMUST00000112550.1|Baz2b|ENSMUSG00000026987.10|bromodomain adjacent to zinc finger domain, 2B
mm10_v2_chr9_-_42461414_42461461	1.09065	Foxp2_Foxp3	ENSMUST00000066179.7|Tbcel|ENSMUSG00000037287.8|tubulin folding cofactor E-like
mm10_v2_chr10_-_18234930_18235008	1.07964	Foxp2_Foxp3	ENSMUST00000052648.8|Ccdc28a|ENSMUSG00000059554.6|coiled-coil domain containing 28A 	ENSMUST00000080860.6|Ccdc28a|ENSMUSG00000059554.6|coiled-coil domain containing 28A 	ENSMUST00000173243.1|Ccdc28a|ENSMUSG00000059554.6|coiled-coil domain containing 28A
mm10_v2_chr19_-_28963863_28963908	1.03815	Foxp2_Foxp3	ENSMUST00000161813.1|4430402I18Rik|ENSMUSG00000064202.9|RIKEN cDNA 4430402I18 gene
mm10_v2_chr17_-_51810866_51810919	0.999785	Foxp2_Foxp3	ENSMUST00000176669.1|Satb1|ENSMUSG00000023927.9|special AT-rich sequence binding protein 1
mm10_v2_chr16_+_43510267_43510308	0.993629	Foxp2_Foxp3	ENSMUST00000114695.2|Zbtb20|ENSMUSG00000022708.10|zinc finger and BTB domain containing 20
mm10_v2_chr6_+_53573364_53573394	0.989463	Foxp2_Foxp3	ENSMUST00000047450.7|Creb5|ENSMUSG00000053007.6|cAMP responsive element binding protein 5
mm10_v2_chr13_+_104287855_104287882	0.949869	Foxp2_Foxp3	ENSMUST00000065766.6|Adamts6|ENSMUSG00000046169.9|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 6
mm10_v2_chrX_+_35888808_35888859	0.949503	Foxp2_Foxp3	ENSMUST00000033419.6|Dock11|ENSMUSG00000031093.8|dedicator of cytokinesis 11
mm10_v2_chr5_+_64812336_64812350	0.943083	Foxp2_Foxp3	ENSMUST00000166409.1|Klf3|ENSMUSG00000029178.8|Kruppel-like factor 3 (basic)
mm10_v2_chr1_-_64956731_64956782	0.941577	Foxp2_Foxp3	ENSMUST00000123225.1|Plekhm3|ENSMUSG00000051344.7|pleckstrin homology domain containing, family M, member 3
mm10_v2_chr19_+_4855129_4855269	0.929916	Foxp2_Foxp3	ENSMUST00000119694.1|Ctsf|ENSMUSG00000083282.2|cathepsin F
mm10_v2_chr3_+_52268337_52268388	0.928643	Foxp2_Foxp3	ENSMUST00000053764.5|Foxo1|ENSMUSG00000044167.5|forkhead box O1
mm10_v2_chr2_+_128126030_128126056	0.921347	Foxp2_Foxp3	ENSMUST00000089634.5|Bcl2l11|ENSMUSG00000027381.10|BCL2-like 11 (apoptosis facilitator) 	ENSMUST00000019281.7|Bcl2l11|ENSMUSG00000027381.10|BCL2-like 11 (apoptosis facilitator) 	ENSMUST00000110341.2|Bcl2l11|ENSMUSG00000027381.10|BCL2-like 11 (apoptosis facilitator) 	ENSMUST00000103211.1|Bcl2l11|ENSMUSG00000027381.10|BCL2-like 11 (apoptosis facilitator) 	ENSMUST00000103210.1|Bcl2l11|ENSMUSG00000027381.10|BCL2-like 11 (apoptosis facilitator)
mm10_v2_chr11_-_86993682_86993707	0.919882	Foxp2_Foxp3	ENSMUST00000018571.4|Ypel2|ENSMUSG00000018427.7|yippee-like 2 (Drosophila)
mm10_v2_chr16_+_43235856_43235880	0.904881	Foxp2_Foxp3	ENSMUST00000146708.1|Zbtb20|ENSMUSG00000022708.10|zinc finger and BTB domain containing 20
mm10_v2_chr15_-_58214882_58214926	0.898064	Foxp2_Foxp3	ENSMUST00000022986.6|Fbxo32|ENSMUSG00000022358.6|F-box protein 32
mm10_v2_chr2_+_4718145_4718205	0.879984	Foxp2_Foxp3	ENSMUST00000056914.6|Bend7|ENSMUSG00000048186.8|BEN domain containing 7
mm10_v2_chr5_+_122643878_122644009	0.86104	Foxp2_Foxp3	ENSMUST00000100737.3|P2rx7|ENSMUSG00000029468.11|purinergic receptor P2X, ligand-gated ion channel, 7 	ENSMUST00000121489.1|P2rx7|ENSMUSG00000029468.11|purinergic receptor P2X, ligand-gated ion channel, 7 	ENSMUST00000031425.8|P2rx7|ENSMUSG00000029468.11|purinergic receptor P2X, ligand-gated ion channel, 7 	ENSMUST00000086247.5|P2rx7|ENSMUSG00000029468.11|purinergic receptor P2X, ligand-gated ion channel, 7
mm10_v2_chr1_-_45503282_45503282	0.858867	Foxp2_Foxp3	ENSMUST00000086430.4|Col5a2|ENSMUSG00000026042.10|collagen, type V, alpha 2
mm10_v2_chr6_+_134830145_134830179	0.857168	Foxp2_Foxp3	ENSMUST00000046303.5|Crebl2|ENSMUSG00000032652.7|cAMP responsive element binding protein-like 2
mm10_v2_chr19_+_23141183_23141263	0.856064	Foxp2_Foxp3	ENSMUST00000036884.1|Klf9|ENSMUSG00000033863.1|Kruppel-like factor 9
mm10_v2_chr2_+_38511643_38511814	0.846265	Foxp2_Foxp3	ENSMUST00000054234.3|Nek6|ENSMUSG00000026749.5|NIMA (never in mitosis gene a)-related expressed kinase 6 	ENSMUST00000112902.1|Nek6|ENSMUSG00000026749.5|NIMA (never in mitosis gene a)-related expressed kinase 6 	ENSMUST00000112895.1|Nek6|ENSMUSG00000026749.5|NIMA (never in mitosis gene a)-related expressed kinase 6
mm10_v2_chr7_+_113207465_113207595	0.842271	Foxp2_Foxp3	ENSMUST00000047321.7|Arntl|ENSMUSG00000055116.7|aryl hydrocarbon receptor nuclear translocator-like
mm10_v2_chr2_+_52072823_52072854	0.816348	Foxp2_Foxp3	ENSMUST00000112693.2|Rif1|ENSMUSG00000036202.9|Rap1 interacting factor 1 homolog (yeast) 	ENSMUST00000069794.5|Rif1|ENSMUSG00000036202.9|Rap1 interacting factor 1 homolog (yeast)
mm10_v2_chr4_-_151108244_151108303	0.813189	Foxp2_Foxp3	ENSMUST00000131948.1|Camta1|ENSMUSG00000014592.13|calmodulin binding transcription activator 1
mm10_v2_chr8_-_121944886_121944908	0.810275	Foxp2_Foxp3	ENSMUST00000057653.7|Car5a|ENSMUSG00000025317.7|carbonic anhydrase 5a, mitochondrial
mm10_v2_chr14_-_88471396_88471396	0.781144	Foxp2_Foxp3	ENSMUST00000061628.5|Pcdh20|ENSMUSG00000050505.6|protocadherin 20
mm10_v2_chr7_-_37773555_37773641	0.75286	Foxp2_Foxp3	ENSMUST00000176534.1|Zfp536|ENSMUSG00000043456.10|zinc finger protein 536
mm10_v2_chr1_-_14310198_14310218	0.751275	Foxp2_Foxp3	ENSMUST00000168081.2|Eya1|ENSMUSG00000025932.8|eyes absent 1 homolog (Drosophila) 	ENSMUST00000027066.6|Eya1|ENSMUSG00000025932.8|eyes absent 1 homolog (Drosophila)
mm10_v2_chr2_+_112265809_112265858	0.736747	Foxp2_Foxp3	ENSMUST00000110991.2|Slc12a6|ENSMUSG00000027130.9|solute carrier family 12, member 6
mm10_v2_chr1_+_51289106_51289142	0.721019	Foxp2_Foxp3	ENSMUST00000051572.6|Sdpr|ENSMUSG00000045954.6|serum deprivation response
mm10_v2_chr5_-_146220901_146220987	0.715595	Foxp2_Foxp3	ENSMUST00000169407.2|Rnf6|ENSMUSG00000029634.9|ring finger protein (C3H2C3 type) 6 	ENSMUST00000161331.1|Rnf6|ENSMUSG00000029634.9|ring finger protein (C3H2C3 type) 6 	ENSMUST00000159074.2|Rnf6|ENSMUSG00000029634.9|ring finger protein (C3H2C3 type) 6 	ENSMUST00000067837.3|Rnf6|ENSMUSG00000029634.9|ring finger protein (C3H2C3 type) 6
mm10_v2_chr13_-_93499803_93499825	0.714777	Foxp2_Foxp3	ENSMUST00000065537.7|Jmy|ENSMUSG00000021690.9|junction-mediating and regulatory protein
mm10_v2_chr14_-_55106547_55106594	0.71051	Foxp2_Foxp3	ENSMUST00000036041.8|Ap1g2|ENSMUSG00000040701.9|adaptor protein complex AP-1, gamma 2 subunit
mm10_v2_chr11_+_16257706_16257808	0.710195	Foxp2_Foxp3	ENSMUST00000109645.2|Vstm2a|ENSMUSG00000048834.9|V-set and transmembrane domain containing 2A 	ENSMUST00000109647.2|Vstm2a|ENSMUSG00000048834.9|V-set and transmembrane domain containing 2A
mm10_v2_chr3_+_53488677_53488727	0.701963	Foxp2_Foxp3	ENSMUST00000029307.3|Stoml3|ENSMUSG00000027744.3|stomatin (Epb7.2)-like 3
mm10_v2_chr12_+_35047180_35047230	0.697822	Foxp2_Foxp3	ENSMUST00000048519.9|Snx13|ENSMUSG00000020590.9|sorting nexin 13 	ENSMUST00000163677.1|Snx13|ENSMUSG00000020590.9|sorting nexin 13
mm10_v2_chr10_+_79716588_79716666	0.681106	Foxp2_Foxp3	ENSMUST00000099513.1|Hcn2|ENSMUSG00000020331.3|hyperpolarization-activated, cyclic nucleotide-gated K+ 2 	ENSMUST00000020581.2|Hcn2|ENSMUSG00000020331.3|hyperpolarization-activated, cyclic nucleotide-gated K+ 2
mm10_v2_chr2_-_65529275_65529404	0.680612	Foxp2_Foxp3	ENSMUST00000126837.1|Scn3a|ENSMUSG00000057182.8|sodium channel, voltage-gated, type III, alpha
mm10_v2_chr2_-_77519565_77519647	0.679223	Foxp2_Foxp3	ENSMUST00000111830.2|Zfp385b|ENSMUSG00000027016.11|zinc finger protein 385B
mm10_v2_chr14_-_18239053_18239127	0.671643	Foxp2_Foxp3	ENSMUST00000090543.5|Nr1d2|ENSMUSG00000021775.10|nuclear receptor subfamily 1, group D, member 2
mm10_v2_chr14_+_61607455_61607482	0.669712	Foxp2_Foxp3	ENSMUST00000051184.8|Kcnrg|ENSMUSG00000046168.8|potassium channel regulator
mm10_v2_chr17_+_35076902_35077073	0.667158	Foxp2_Foxp3	ENSMUST00000172494.1|Ly6g6e|ENSMUSG00000013766.5|lymphocyte antigen 6 complex, locus G6E 	ENSMUST00000172678.1|Ly6g6e|ENSMUSG00000013766.5|lymphocyte antigen 6 complex, locus G6E 	ENSMUST00000013910.4|Ly6g6e|ENSMUSG00000013766.5|lymphocyte antigen 6 complex, locus G6E
mm10_v2_chr2_+_28641227_28641262	0.660033	Foxp2_Foxp3	ENSMUST00000028155.5|Tsc1|ENSMUSG00000026812.10|tuberous sclerosis 1 	ENSMUST00000113869.1|Tsc1|ENSMUSG00000026812.10|tuberous sclerosis 1 	ENSMUST00000113867.2|Tsc1|ENSMUSG00000026812.10|tuberous sclerosis 1
mm10_v2_chr12_+_71016658_71016708	0.640234	Foxp2_Foxp3	ENSMUST00000125125.1|Arid4a|ENSMUSG00000048118.11|AT rich interactive domain 4A (RBP1-like)
mm10_v2_chr12_+_71136848_71136848	0.633559	Foxp2_Foxp3	ENSMUST00000149564.1|2700049A03Rik|ENSMUSG00000034601.10|RIKEN cDNA 2700049A03 gene 	ENSMUST00000045907.8|2700049A03Rik|ENSMUSG00000034601.10|RIKEN cDNA 2700049A03 gene
mm10_v2_chr19_-_28010995_28011054	0.631452	Foxp2_Foxp3	ENSMUST00000172907.1|Rfx3|ENSMUSG00000040929.10|regulatory factor X, 3 (influences HLA class II expression) 	ENSMUST00000046898.9|Rfx3|ENSMUSG00000040929.10|regulatory factor X, 3 (influences HLA class II expression)
mm10_v2_chr4_-_87806276_87806294	0.629904	Foxp2_Foxp3	ENSMUST00000148059.1|Mllt3|ENSMUSG00000028496.11|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3
mm10_v2_chr16_-_44016387_44016436	0.627161	Foxp2_Foxp3	ENSMUST00000036174.3|Gramd1c|ENSMUSG00000036292.7|GRAM domain containing 1C
mm10_v2_chrX_+_169685191_169685250	0.620552	Foxp2_Foxp3	ENSMUST00000112104.1|Mid1|ENSMUSG00000035299.10|midline 1 	ENSMUST00000112107.1|Mid1|ENSMUSG00000035299.10|midline 1
mm10_v2_chr1_-_64121389_64121452	0.616267	Foxp2_Foxp3	ENSMUST00000055001.3|Klf7|ENSMUSG00000025959.7|Kruppel-like factor 7 (ubiquitous)
mm10_v2_chrX_+_7722267_7722362	0.61585	Foxp2_Foxp3	ENSMUST00000125991.1|Wdr45|ENSMUSG00000039382.5|WD repeat domain 45 	ENSMUST00000148624.1|Wdr45|ENSMUSG00000039382.5|WD repeat domain 45
mm10_v2_chr8_-_31918203_31918368	0.610724	Foxp2_Foxp3	ENSMUST00000073884.4|Nrg1|ENSMUSG00000062991.6|neuregulin 1
mm10_v2_chr19_-_28011138_28011181	0.603727	Foxp2_Foxp3	ENSMUST00000174850.1|Rfx3|ENSMUSG00000040929.10|regulatory factor X, 3 (influences HLA class II expression)
mm10_v2_chr2_-_181578906_181578952	0.600646	Foxp2_Foxp3	ENSMUST00000136875.1|Uckl1|ENSMUSG00000089917.1|uridine-cytidine kinase 1-like 1
mm10_v2_chr5_+_3928033_3928178	0.58606	Foxp2_Foxp3	ENSMUST00000143365.1|Akap9|ENSMUSG00000040407.11|A kinase (PRKA) anchor protein (yotiao) 9
mm10_v2_chr17_+_70522083_70522145	0.584832	Foxp2_Foxp3	ENSMUST00000148486.1|Dlgap1|ENSMUSG00000003279.10|discs, large (Drosophila) homolog-associated protein 1 	ENSMUST00000133717.1|Dlgap1|ENSMUSG00000003279.10|discs, large (Drosophila) homolog-associated protein 1
mm10_v2_chr6_+_17491216_17491242	0.584458	Foxp2_Foxp3	ENSMUST00000080469.5|Met|ENSMUSG00000009376.9|met proto-oncogene
mm10_v2_chr16_+_43364145_43364204	0.576394	Foxp2_Foxp3	ENSMUST00000148775.1|Zbtb20|ENSMUSG00000022708.10|zinc finger and BTB domain containing 20
mm10_v2_chr16_+_20097554_20097596	0.562081	Foxp2_Foxp3	ENSMUST00000023509.3|Klhl24|ENSMUSG00000062901.2|kelch-like 24
mm10_v2_chr9_+_13619990_13619990	0.561766	Foxp2_Foxp3	ENSMUST00000159294.1|Maml2|ENSMUSG00000031925.10|mastermind like 2 (Drosophila)
mm10_v2_chr6_+_92940572_92940592	0.559617	Foxp2_Foxp3	ENSMUST00000181145.1|9530026P05Rik|ENSMUSG00000097462.1|RIKEN cDNA 9530026P05 gene 	ENSMUST00000181840.1|9530026P05Rik|ENSMUSG00000097462.1|RIKEN cDNA 9530026P05 gene
mm10_v2_chr13_+_80886095_80886201	0.557641	Foxp2_Foxp3	ENSMUST00000161441.1|Arrdc3|ENSMUSG00000074794.3|arrestin domain containing 3
mm10_v2_chr2_-_20943413_20943424	0.55537	Foxp2_Foxp3	ENSMUST00000140230.1|Arhgap21|ENSMUSG00000036591.9|Rho GTPase activating protein 21
mm10_v2_chr18_+_69593361_69593450	0.555313	Foxp2_Foxp3	ENSMUST00000114978.2|Tcf4|ENSMUSG00000053477.9|transcription factor 4 	ENSMUST00000114977.1|Tcf4|ENSMUSG00000053477.9|transcription factor 4
mm10_v2_chr15_-_96460838_96460856	0.555244	Foxp2_Foxp3	ENSMUST00000047835.6|Scaf11|ENSMUSG00000033228.7|SR-related CTD-associated factor 11
mm10_v2_chr7_-_79149042_79149062	0.552452	Foxp2_Foxp3	ENSMUST00000032825.8|Mfge8|ENSMUSG00000030605.9|milk fat globule-EGF factor 8 protein 	ENSMUST00000107409.3|Mfge8|ENSMUSG00000030605.9|milk fat globule-EGF factor 8 protein
mm10_v2_chr13_+_55209776_55209788	0.550793	Foxp2_Foxp3	ENSMUST00000099490.2|Nsd1|ENSMUSG00000021488.7|nuclear receptor-binding SET-domain protein 1
mm10_v2_chr10_-_93311073_93311161	0.550411	Foxp2_Foxp3	ENSMUST00000008542.5|Elk3|ENSMUSG00000008398.8|ELK3, member of ETS oncogene family
mm10_v2_chr5_+_107437908_107437997	0.549424	Foxp2_Foxp3	ENSMUST00000094541.2|Btbd8|ENSMUSG00000070632.3|BTB (POZ) domain containing 8
mm10_v2_chr9_-_40455670_40455777	0.543428	Foxp2_Foxp3	ENSMUST00000165104.1|Gramd1b|ENSMUSG00000040111.8|GRAM domain containing 1B 	ENSMUST00000045682.5|Gramd1b|ENSMUSG00000040111.8|GRAM domain containing 1B
mm10_v2_chr6_-_39557830_39557867	0.539224	Foxp2_Foxp3	ENSMUST00000036877.3|Dennd2a|ENSMUSG00000038456.3|DENN/MADD domain containing 2A 	ENSMUST00000154149.1|Dennd2a|ENSMUSG00000038456.3|DENN/MADD domain containing 2A
mm10_v2_chr15_+_25752860_25752979	0.535603	Foxp2_Foxp3	ENSMUST00000022882.5|Myo10|ENSMUSG00000022272.11|myosin X 	ENSMUST00000135173.1|Myo10|ENSMUSG00000022272.11|myosin X
mm10_v2_chrX_+_71663665_71663671	0.532229	Foxp2_Foxp3	ENSMUST00000070449.5|Gpr50|ENSMUSG00000056380.7|G-protein-coupled receptor 50
mm10_v2_chr11_+_54438188_54438220	0.531855	Foxp2_Foxp3	ENSMUST00000046835.7|Fnip1|ENSMUSG00000035992.9|folliculin interacting protein 1
mm10_v2_chr10_-_53647080_53647080	0.526789	Foxp2_Foxp3	ENSMUST00000169866.1|Fam184a|ENSMUSG00000019856.7|family with sequence similarity 184, member A
mm10_v2_chr18_+_37496997_37496997	0.519457	Foxp2_Foxp3	ENSMUST00000059571.5|Pcdhb19|ENSMUSG00000043313.5|protocadherin beta 19
mm10_v2_chr6_+_34709610_34709635	0.51711	Foxp2_Foxp3	ENSMUST00000031775.6|Cald1|ENSMUSG00000029761.10|caldesmon 1
mm10_v2_chr4_+_136357423_136357541	0.507125	Foxp2_Foxp3	ENSMUST00000182167.1|Gm17388|ENSMUSG00000097588.2|predicted gene, 17388
mm10_v2_chr19_+_55741810_55741842	0.504572	Foxp2_Foxp3	ENSMUST00000111657.3|Tcf7l2|ENSMUSG00000024985.12|transcription factor 7 like 2, T cell specific, HMG box 	ENSMUST00000061496.9|Tcf7l2|ENSMUSG00000024985.12|transcription factor 7 like 2, T cell specific, HMG box 	ENSMUST00000041717.7|Tcf7l2|ENSMUSG00000024985.12|transcription factor 7 like 2, T cell specific, HMG box 	ENSMUST00000111662.4|Tcf7l2|ENSMUSG00000024985.12|transcription factor 7 like 2, T cell specific, HMG box
mm10_v2_chr3_+_34649987_34650005	0.502855	Foxp2_Foxp3	ENSMUST00000099151.2|Sox2|ENSMUSG00000074637.4|SRY-box containing gene 2
mm10_v2_chr17_+_70522149_70522169	0.502431	Foxp2_Foxp3	ENSMUST00000140728.1|Dlgap1|ENSMUSG00000003279.10|discs, large (Drosophila) homolog-associated protein 1
mm10_v2_chr12_-_31950210_31950246	0.500632	Foxp2_Foxp3	ENSMUST00000176084.1|Hbp1|ENSMUSG00000002996.11|high mobility group box transcription factor 1 	ENSMUST00000176103.1|Hbp1|ENSMUSG00000002996.11|high mobility group box transcription factor 1 	ENSMUST00000167458.2|Hbp1|ENSMUSG00000002996.11|high mobility group box transcription factor 1
mm10_v2_chr4_+_133130505_133130590	0.499233	Foxp2_Foxp3	ENSMUST00000084241.5|Wasf2|ENSMUSG00000028868.7|WAS protein family, member 2 	ENSMUST00000138831.1|Wasf2|ENSMUSG00000028868.7|WAS protein family, member 2
mm10_v2_chr13_-_98815408_98815449	0.490417	Foxp2_Foxp3	ENSMUST00000040340.8|Fcho2|ENSMUSG00000041685.9|FCH domain only 2 	ENSMUST00000099277.4|Fcho2|ENSMUSG00000041685.9|FCH domain only 2 	ENSMUST00000179563.1|Fcho2|ENSMUSG00000041685.9|FCH domain only 2 	ENSMUST00000109403.1|Fcho2|ENSMUSG00000041685.9|FCH domain only 2
mm10_v2_chr14_+_64589802_64589848	0.486359	Foxp2_Foxp3	ENSMUST00000180610.1|A930011O12Rik|ENSMUSG00000097545.1|RIKEN cDNA A930011O12 gene
mm10_v2_chr8_-_84773381_84773427	0.484276	Foxp2_Foxp3	ENSMUST00000109764.1|Nfix|ENSMUSG00000001911.10|nuclear factor I/X
mm10_v2_chrX_+_36328353_36328418	0.477341	Foxp2_Foxp3	ENSMUST00000016383.3|Lonrf3|ENSMUSG00000016239.5|LON peptidase N-terminal domain and ring finger 3
mm10_v2_chr15_+_25742314_25742409	0.475747	Foxp2_Foxp3	ENSMUST00000135981.1|Myo10|ENSMUSG00000022272.11|myosin X
mm10_v2_chr10_-_105574435_105574451	0.47547	Foxp2_Foxp3	ENSMUST00000061506.8|Tmtc2|ENSMUSG00000036019.8|transmembrane and tetratricopeptide repeat containing 2
mm10_v2_chr13_+_76579670_76579678	0.473795	Foxp2_Foxp3	ENSMUST00000126960.1|Mctp1|ENSMUSG00000021596.10|multiple C2 domains, transmembrane 1 	ENSMUST00000109583.2|Mctp1|ENSMUSG00000021596.10|multiple C2 domains, transmembrane 1
mm10_v2_chr4_+_11191726_11191789	0.469945	Foxp2_Foxp3	ENSMUST00000029866.9|Ccne2|ENSMUSG00000028212.10|cyclin E2 	ENSMUST00000108324.3|Ccne2|ENSMUSG00000028212.10|cyclin E2
mm10_v2_chr5_-_96164147_96164201	0.465349	Foxp2_Foxp3	ENSMUST00000137207.1|Cnot6l|ENSMUSG00000034724.11|CCR4-NOT transcription complex, subunit 6-like
mm10_v2_chr13_-_52929458_52929497	0.465084	Foxp2_Foxp3	ENSMUST00000123599.1|Auh|ENSMUSG00000021460.10|AU RNA binding protein/enoyl-coenzyme A hydratase
mm10_v2_chr1_-_179546261_179546276	0.464201	Foxp2_Foxp3	ENSMUST00000027769.5|Tfb2m|ENSMUSG00000026492.5|transcription factor B2, mitochondrial
mm10_v2_chr17_+_35077080_35077155	0.460226	Foxp2_Foxp3	ENSMUST00000172959.1|Ly6g6e|ENSMUSG00000013766.5|lymphocyte antigen 6 complex, locus G6E
mm10_v2_chr7_+_64287665_64287676	0.454502	Foxp2_Foxp3	ENSMUST00000032736.4|Mtmr10|ENSMUSG00000030522.8|myotubularin related protein 10
mm10_v2_chr2_-_169405435_169405473	0.45124	Foxp2_Foxp3	ENSMUST00000131509.1|4930529I22Rik|ENSMUSG00000085350.1|RIKEN cDNA 4930529I22 gene
mm10_v2_chr12_+_52699297_52699411	0.449662	Foxp2_Foxp3	ENSMUST00000095737.3|Akap6|ENSMUSG00000061603.7|A kinase (PRKA) anchor protein 6
mm10_v2_chr14_-_55560340_55560406	0.448296	Foxp2_Foxp3	ENSMUST00000066106.3|A730061H03Rik|ENSMUSG00000053588.3|RIKEN cDNA A730061H03 gene
mm10_v2_chr3_-_146770218_146770261	0.447727	Foxp2_Foxp3	ENSMUST00000106137.1|Prkacb|ENSMUSG00000005034.9|protein kinase, cAMP dependent, catalytic, beta
mm10_v2_chr13_+_29016267_29016303	0.446938	Foxp2_Foxp3	ENSMUST00000140415.1|A330102I10Rik|ENSMUSG00000086363.1|RIKEN cDNA A330102I10 gene
mm10_v2_chr5_+_14025305_14025327	0.446652	Foxp2_Foxp3	ENSMUST00000073957.6|Sema3e|ENSMUSG00000063531.6|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E
mm10_v2_chr9_-_60838200_60838200	0.443833	Foxp2_Foxp3	ENSMUST00000063858.7|Gm9869|ENSMUSG00000052143.7|predicted gene 9869
mm10_v2_chr2_+_35132194_35132258	0.436402	Foxp2_Foxp3	ENSMUST00000113034.1|Cep110|ENSMUSG00000057110.9|centrosomal protein 110 	ENSMUST00000113037.3|Cep110|ENSMUSG00000057110.9|centrosomal protein 110 	ENSMUST00000113033.2|Cep110|ENSMUSG00000057110.9|centrosomal protein 110
mm10_v2_chr12_-_85270564_85270608	0.434308	Foxp2_Foxp3	ENSMUST00000019378.6|Mlh3|ENSMUSG00000021245.8|mutL homolog 3 (E coli) 	ENSMUST00000166821.1|Mlh3|ENSMUSG00000021245.8|mutL homolog 3 (E coli)
mm10_v2_chrX_+_7722214_7722260	0.43374	Foxp2_Foxp3	ENSMUST00000043045.2|Wdr45|ENSMUSG00000039382.5|WD repeat domain 45 	ENSMUST00000116634.1|Wdr45|ENSMUSG00000039382.5|WD repeat domain 45 	ENSMUST00000115689.3|Wdr45|ENSMUSG00000039382.5|WD repeat domain 45 	ENSMUST00000131077.1|Wdr45|ENSMUSG00000039382.5|WD repeat domain 45 	ENSMUST00000115688.1|Wdr45|ENSMUSG00000039382.5|WD repeat domain 45 	ENSMUST00000116633.1|Wdr45|ENSMUSG00000039382.5|WD repeat domain 45
mm10_v2_chr11_+_106789235_106789335	0.430055	Foxp2_Foxp3	ENSMUST00000103068.3|Cep95|ENSMUSG00000018372.7|centrosomal protein 95 	ENSMUST00000018516.4|Cep95|ENSMUSG00000018372.7|centrosomal protein 95
mm10_v2_chr6_+_34598500_34598529	0.423472	Foxp2_Foxp3	ENSMUST00000079391.3|Cald1|ENSMUSG00000029761.10|caldesmon 1 	ENSMUST00000142512.1|Cald1|ENSMUSG00000029761.10|caldesmon 1
mm10_v2_chr2_-_170194033_170194064	0.422926	Foxp2_Foxp3	ENSMUST00000180625.1|Gm17619|ENSMUSG00000097514.1|predicted gene, 17619
mm10_v2_chr7_-_142372210_142372292	0.420806	Foxp2_Foxp3	ENSMUST00000084412.5|Ifitm10|ENSMUSG00000045777.8|interferon induced transmembrane protein 10
mm10_v2_chr2_+_3770673_3770708	0.418715	Foxp2_Foxp3	ENSMUST00000177037.1|Fam107b|ENSMUSG00000026655.8|family with sequence similarity 107, member B
mm10_v2_chr7_-_37772868_37772891	0.418012	Foxp2_Foxp3	ENSMUST00000176205.1|Zfp536|ENSMUSG00000043456.10|zinc finger protein 536
mm10_v2_chr3_+_76075583_76075583	0.417957	Foxp2_Foxp3	ENSMUST00000160261.1|Fstl5|ENSMUSG00000034098.8|follistatin-like 5
mm10_v2_chr18_-_34624562_34624601	0.417134	Foxp2_Foxp3	ENSMUST00000003876.3|Brd8|ENSMUSG00000003778.8|bromodomain containing 8 	ENSMUST00000115766.1|Brd8|ENSMUSG00000003778.8|bromodomain containing 8 	ENSMUST00000097626.3|Brd8|ENSMUSG00000003778.8|bromodomain containing 8 	ENSMUST00000115765.1|Brd8|ENSMUSG00000003778.8|bromodomain containing 8
mm10_v2_chr6_+_124916863_124916863	0.412244	Foxp2_Foxp3	ENSMUST00000069553.2|A230083G16Rik|ENSMUSG00000055818.2|RIKEN cDNA A230083G16 gene
mm10_v2_chr5_-_146221391_146221420	0.411923	Foxp2_Foxp3	ENSMUST00000161574.1|Rnf6|ENSMUSG00000029634.9|ring finger protein (C3H2C3 type) 6
mm10_v2_chr3_-_146781351_146781431	0.411721	Foxp2_Foxp3	ENSMUST00000005164.7|Prkacb|ENSMUSG00000005034.9|protein kinase, cAMP dependent, catalytic, beta
mm10_v2_chr7_+_19359740_19359770	0.410735	Foxp2_Foxp3	ENSMUST00000140836.1|Ppp1r13l|ENSMUSG00000040734.8|protein phosphatase 1, regulatory (inhibitor) subunit 13 like
mm10_v2_chr16_-_34263179_34263208	0.407813	Foxp2_Foxp3	ENSMUST00000114949.1|Kalrn|ENSMUSG00000061751.9|kalirin, RhoGEF kinase 	ENSMUST00000114954.1|Kalrn|ENSMUSG00000061751.9|kalirin, RhoGEF kinase
mm10_v2_chr13_-_103920295_103920367	0.40318	Foxp2_Foxp3	ENSMUST00000169083.1|Erbb2ip|ENSMUSG00000021709.8|Erbb2 interacting protein
mm10_v2_chr11_-_106920359_106920643	0.402982	Foxp2_Foxp3	ENSMUST00000167787.1|Smurf2|ENSMUSG00000018363.10|SMAD specific E3 ubiquitin protein ligase 2 	ENSMUST00000092517.2|Smurf2|ENSMUSG00000018363.10|SMAD specific E3 ubiquitin protein ligase 2
mm10_v2_chr4_-_59549243_59549303	0.402132	Foxp2_Foxp3	ENSMUST00000173699.1|Ptbp3|ENSMUSG00000028382.9|polypyrimidine tract binding protein 3 	ENSMUST00000173884.1|Ptbp3|ENSMUSG00000028382.9|polypyrimidine tract binding protein 3 	ENSMUST00000102883.4|Ptbp3|ENSMUSG00000028382.9|polypyrimidine tract binding protein 3 	ENSMUST00000174586.1|Ptbp3|ENSMUSG00000028382.9|polypyrimidine tract binding protein 3
mm10_v2_chrX_+_103356464_103356488	0.399486	Foxp2_Foxp3	ENSMUST00000116547.2|Chic1|ENSMUSG00000031327.10|cysteine-rich hydrophobic domain 1
mm10_v2_chr17_+_7925990_7926006	0.399468	Foxp2_Foxp3	ENSMUST00000036370.7|Tagap|ENSMUSG00000033450.7|T cell activation Rho GTPase activating protein
mm10_v2_chr18_+_37489465_37489465	0.398397	Foxp2_Foxp3	ENSMUST00000055949.2|Pcdhb18|ENSMUSG00000048347.4|protocadherin beta 18
mm10_v2_chr1_-_171281181_171281192	0.395889	Foxp2_Foxp3	ENSMUST00000073120.4|Ppox|ENSMUSG00000062729.5|protoporphyrinogen oxidase
mm10_v2_chr6_-_87335758_87335775	0.392639	Foxp2_Foxp3	ENSMUST00000042025.9|Antxr1|ENSMUSG00000033420.10|anthrax toxin receptor 1
mm10_v2_chr11_+_69095217_69095289	0.387992	Foxp2_Foxp3	ENSMUST00000101004.2|Per1|ENSMUSG00000020893.11|period circadian clock 1
mm10_v2_chr11_+_102836296_102836458	0.387731	Foxp2_Foxp3	ENSMUST00000021302.8|Higd1b|ENSMUSG00000020928.8|HIG1 domain family, member 1B 	ENSMUST00000107072.1|Higd1b|ENSMUSG00000020928.8|HIG1 domain family, member 1B
mm10_v2_chr11_+_3330781_3330812	0.387058	Foxp2_Foxp3	ENSMUST00000136536.1|Pik3ip1|ENSMUSG00000034614.8|phosphoinositide-3-kinase interacting protein 1 	ENSMUST00000093399.4|Pik3ip1|ENSMUSG00000034614.8|phosphoinositide-3-kinase interacting protein 1
mm10_v2_chr1_-_64121456_64121491	0.384659	Foxp2_Foxp3	ENSMUST00000142009.1|Klf7|ENSMUSG00000025959.7|Kruppel-like factor 7 (ubiquitous) 	ENSMUST00000114086.1|Klf7|ENSMUSG00000025959.7|Kruppel-like factor 7 (ubiquitous)
mm10_v2_chr7_-_12422488_12422488	0.38142	Foxp2_Foxp3	ENSMUST00000120220.1|Zfp551|ENSMUSG00000034071.8|zinc fingr protein 551
mm10_v2_chr2_+_145785980_145786152	0.381021	Foxp2_Foxp3	ENSMUST00000110005.1|Rin2|ENSMUSG00000001768.9|Ras and Rab interactor 2 	ENSMUST00000094480.4|Rin2|ENSMUSG00000001768.9|Ras and Rab interactor 2
mm10_v2_chr6_-_86765807_86765834	0.380139	Foxp2_Foxp3	ENSMUST00000123732.1|Anxa4|ENSMUSG00000029994.11|annexin A4
mm10_v2_chr3_-_63851251_63851359	0.378086	Foxp2_Foxp3	ENSMUST00000162269.2|Plch1|ENSMUSG00000036834.10|phospholipase C, eta 1 	ENSMUST00000159676.2|Plch1|ENSMUSG00000036834.10|phospholipase C, eta 1 	ENSMUST00000175947.1|Plch1|ENSMUSG00000036834.10|phospholipase C, eta 1
mm10_v2_chr4_-_118409219_118409282	0.37561	Foxp2_Foxp3	ENSMUST00000075406.5|Szt2|ENSMUSG00000033253.12|seizure threshold 2
mm10_v2_chr2_-_73312701_73312724	0.371611	Foxp2_Foxp3	ENSMUST00000058615.9|Cir1|ENSMUSG00000041777.11|corepressor interacting with RBPJ, 1
mm10_v2_chr12_-_100725028_100725081	0.371271	Foxp2_Foxp3	ENSMUST00000043599.6|Rps6ka5|ENSMUSG00000021180.8|ribosomal protein S6 kinase, polypeptide 5
mm10_v2_chr12_-_31950170_31950197	0.369042	Foxp2_Foxp3	ENSMUST00000176520.1|Hbp1|ENSMUSG00000002996.11|high mobility group box transcription factor 1
mm10_v2_chr11_-_102556122_102556199	0.36577	Foxp2_Foxp3	ENSMUST00000143842.1|Gpatch8|ENSMUSG00000034621.8|G patch domain containing 8
mm10_v2_chr8_+_20136455_20136574	0.361076	Foxp2_Foxp3	ENSMUST00000179299.1|Gm21811|ENSMUSG00000096401.1|predicted gene, 21811 	ENSMUST00000096485.4|Gm21811|ENSMUSG00000096401.1|predicted gene, 21811
mm10_v2_chr6_+_34598530_34598587	0.358735	Foxp2_Foxp3	ENSMUST00000115027.1|Cald1|ENSMUSG00000029761.10|caldesmon 1 	ENSMUST00000115026.1|Cald1|ENSMUSG00000029761.10|caldesmon 1
mm10_v2_chr5_+_48242549_48242549	0.358321	Foxp2_Foxp3	ENSMUST00000172493.1|Slit2|ENSMUSG00000031558.9|slit homolog 2 (Drosophila)
mm10_v2_chrX_-_164980279_164980309	0.354061	Foxp2_Foxp3	ENSMUST00000112247.2|Mospd2|ENSMUSG00000061778.4|motile sperm domain containing 2
mm10_v2_chr14_+_115042752_115042879	0.350523	Foxp2_Foxp3	ENSMUST00000134140.2|Mir17hg|ENSMUSG00000089726.2|Mir17 host gene 1 (non-protein coding)
mm10_v2_chr10_-_82690608_82690650	0.349256	Foxp2_Foxp3	ENSMUST00000065815.6|Glt8d2|ENSMUSG00000020251.7|glycosyltransferase 8 domain containing 2 	ENSMUST00000020485.3|Glt8d2|ENSMUSG00000020251.7|glycosyltransferase 8 domain containing 2
mm10_v2_chr6_-_13677930_13677974	0.346808	Foxp2_Foxp3	ENSMUST00000045235.5|B630005N14Rik|ENSMUSG00000042742.5|RIKEN cDNA B630005N14 gene
mm10_v2_chr1_+_87404916_87404964	0.34671	Foxp2_Foxp3	ENSMUST00000173152.1|Gigyf2|ENSMUSG00000048000.9|GRB10 interacting GYF protein 2 	ENSMUST00000173663.1|Gigyf2|ENSMUSG00000048000.9|GRB10 interacting GYF protein 2
mm10_v2_chr6_+_29853746_29853790	0.343972	Foxp2_Foxp3	ENSMUST00000064872.6|Ahcyl2|ENSMUSG00000029772.11|S-adenosylhomocysteine hydrolase-like 2 	ENSMUST00000152581.1|Ahcyl2|ENSMUSG00000029772.11|S-adenosylhomocysteine hydrolase-like 2 	ENSMUST00000176265.1|Ahcyl2|ENSMUSG00000029772.11|S-adenosylhomocysteine hydrolase-like 2 	ENSMUST00000154079.1|Ahcyl2|ENSMUSG00000029772.11|S-adenosylhomocysteine hydrolase-like 2
mm10_v2_chr14_-_70207637_70207675	0.338801	Foxp2_Foxp3	ENSMUST00000022682.5|Sorbs3|ENSMUSG00000022091.5|sorbin and SH3 domain containing 3
mm10_v2_chr10_+_62071014_62071020	0.337769	Foxp2_Foxp3	ENSMUST00000053865.5|Gm5424|ENSMUSG00000046687.5|predicted gene 5424
mm10_v2_chr10_+_60106452_60106468	0.337246	Foxp2_Foxp3	ENSMUST00000165024.2|Spock2|ENSMUSG00000058297.10|sparc/osteonectin, cwcv and kazal-like domains proteoglycan 2
mm10_v2_chr2_-_51972990_51973022	0.337171	Foxp2_Foxp3	ENSMUST00000145481.1|Nmi|ENSMUSG00000026946.3|N-myc (and STAT) interactor 	ENSMUST00000112705.2|Nmi|ENSMUSG00000026946.3|N-myc (and STAT) interactor
mm10_v2_chr15_+_25940846_25940934	0.333701	Foxp2_Foxp3	ENSMUST00000110438.1|Fam134b|ENSMUSG00000022270.9|family with sequence similarity 134, member B
mm10_v2_chr6_+_34709442_34709497	0.331798	Foxp2_Foxp3	ENSMUST00000115021.1|Cald1|ENSMUSG00000029761.10|caldesmon 1
mm10_v2_chr16_+_87354185_87354249	0.331264	Foxp2_Foxp3	ENSMUST00000054442.4|N6amt1|ENSMUSG00000044442.5|N-6 adenine-specific DNA methyltransferase 1 (putative) 	ENSMUST00000118310.1|N6amt1|ENSMUSG00000044442.5|N-6 adenine-specific DNA methyltransferase 1 (putative) 	ENSMUST00000120284.1|N6amt1|ENSMUSG00000044442.5|N-6 adenine-specific DNA methyltransferase 1 (putative) 	ENSMUST00000118115.1|N6amt1|ENSMUSG00000044442.5|N-6 adenine-specific DNA methyltransferase 1 (putative)
mm10_v2_chr2_-_7395879_7395912	0.33016	Foxp2_Foxp3	ENSMUST00000182404.1|Celf2|ENSMUSG00000002107.12|CUGBP, Elav-like family member 2
mm10_v2_chr1_-_180195981_180196075	0.328426	Foxp2_Foxp3	ENSMUST00000027766.6|Adck3|ENSMUSG00000026489.7|aarF domain containing kinase 3 	ENSMUST00000161814.1|Adck3|ENSMUSG00000026489.7|aarF domain containing kinase 3
mm10_v2_chr9_-_90270712_90270804	0.325043	Foxp2_Foxp3	ENSMUST00000041767.7|Tbc1d2b|ENSMUSG00000037410.7|TBC1 domain family, member 2B 	ENSMUST00000144348.1|Tbc1d2b|ENSMUSG00000037410.7|TBC1 domain family, member 2B
mm10_v2_chr9_-_71896047_71896102	0.32322	Foxp2_Foxp3	ENSMUST00000184448.1|Tcf12|ENSMUSG00000032228.10|transcription factor 12
mm10_v2_chr1_+_75549581_75549626	0.321534	Foxp2_Foxp3	ENSMUST00000154101.1|Slc4a3|ENSMUSG00000006576.10|solute carrier family 4 (anion exchanger), member 3
mm10_v2_chr13_-_12464925_12464949	0.320652	Foxp2_Foxp3	ENSMUST00000124888.1|Lgals8|ENSMUSG00000057554.7|lectin, galactose binding, soluble 8
mm10_v2_chrX_-_164980310_164980375	0.318844	Foxp2_Foxp3	ENSMUST00000004715.1|Mospd2|ENSMUSG00000061778.4|motile sperm domain containing 2 	ENSMUST00000112248.2|Mospd2|ENSMUSG00000061778.4|motile sperm domain containing 2
mm10_v2_chr11_+_107547925_107547968	0.316783	Foxp2_Foxp3	ENSMUST00000100305.1|Helz|ENSMUSG00000020721.10|helicase with zinc finger domain 	ENSMUST00000075012.1|Helz|ENSMUSG00000020721.10|helicase with zinc finger domain 	ENSMUST00000106746.1|Helz|ENSMUSG00000020721.10|helicase with zinc finger domain
mm10_v2_chr9_+_96196246_96196280	0.315379	Foxp2_Foxp3	ENSMUST00000165120.2|Tfdp2|ENSMUSG00000032411.9|transcription factor Dp 2 	ENSMUST00000034982.9|Tfdp2|ENSMUSG00000032411.9|transcription factor Dp 2
mm10_v2_chr9_-_103230415_103230444	0.312142	Foxp2_Foxp3	ENSMUST00000035158.9|Trf|ENSMUSG00000032554.9|transferrin
mm10_v2_chr13_+_104178797_104178872	0.307207	Foxp2_Foxp3	ENSMUST00000022225.5|Trim23|ENSMUSG00000021712.8|tripartite motif-containing 23 	ENSMUST00000069187.5|Trim23|ENSMUSG00000021712.8|tripartite motif-containing 23
mm10_v2_chr18_-_62756275_62756347	0.306966	Foxp2_Foxp3	ENSMUST00000067450.1|2700046A07Rik|ENSMUSG00000041789.6|RIKEN cDNA 2700046A07 gene 	ENSMUST00000048109.5|2700046A07Rik|ENSMUSG00000041789.6|RIKEN cDNA 2700046A07 gene
mm10_v2_chr18_+_65698253_65698277	0.30663	Foxp2_Foxp3	ENSMUST00000115097.1|Oacyl|ENSMUSG00000046610.8|O-acyltransferase like 	ENSMUST00000117694.1|Oacyl|ENSMUSG00000046610.8|O-acyltransferase like
mm10_v2_chr8_+_45885479_45885494	0.305361	Foxp2_Foxp3	ENSMUST00000034053.5|Pdlim3|ENSMUSG00000031636.6|PDZ and LIM domain 3
mm10_v2_chr3_-_51277470_51277514	0.300214	Foxp2_Foxp3	ENSMUST00000108053.2|Elf2|ENSMUSG00000037174.12|E74-like factor 2 	ENSMUST00000108051.1|Elf2|ENSMUSG00000037174.12|E74-like factor 2
mm10_v2_chr5_-_107875035_107875107	0.299334	Foxp2_Foxp3	ENSMUST00000138111.1|Evi5|ENSMUSG00000011831.10|ecotropic viral integration site 5 	ENSMUST00000112642.1|Evi5|ENSMUSG00000011831.10|ecotropic viral integration site 5
mm10_v2_chr1_+_34005872_34005908	0.299211	Foxp2_Foxp3	ENSMUST00000182296.1|Dst|ENSMUSG00000026131.11|dystonin
mm10_v2_chr12_+_73584788_73584810	0.296338	Foxp2_Foxp3	ENSMUST00000021527.8|Prkch|ENSMUSG00000021108.11|protein kinase C, eta
mm10_v2_chr10_+_69534039_69534070	0.296152	Foxp2_Foxp3	ENSMUST00000182557.1|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial
mm10_v2_chr16_-_34262945_34262972	0.295615	Foxp2_Foxp3	ENSMUST00000114953.1|Kalrn|ENSMUSG00000061751.9|kalirin, RhoGEF kinase
mm10_v2_chr10_-_53638269_53638269	0.294982	Foxp2_Foxp3	ENSMUST00000164393.1|Fam184a|ENSMUSG00000019856.7|family with sequence similarity 184, member A
mm10_v2_chr1_-_163289214_163289235	0.293656	Foxp2_Foxp3	ENSMUST00000183691.1|Prrx1|ENSMUSG00000026586.10|paired related homeobox 1
mm10_v2_chr3_+_51559757_51559781	0.2926	Foxp2_Foxp3	ENSMUST00000180616.1|5031434O11Rik|ENSMUSG00000097885.1|RIKEN cDNA 5031434O11 gene
mm10_v2_chr19_-_37207293_37207508	0.290754	Foxp2_Foxp3	ENSMUST00000132580.1|Cpeb3|ENSMUSG00000039652.10|cytoplasmic polyadenylation element binding protein 3 	ENSMUST00000079754.4|Cpeb3|ENSMUSG00000039652.10|cytoplasmic polyadenylation element binding protein 3 	ENSMUST00000136286.1|Cpeb3|ENSMUSG00000039652.10|cytoplasmic polyadenylation element binding protein 3 	ENSMUST00000126188.1|Cpeb3|ENSMUSG00000039652.10|cytoplasmic polyadenylation element binding protein 3 	ENSMUST00000126781.1|Cpeb3|ENSMUSG00000039652.10|cytoplasmic polyadenylation element binding protein 3
mm10_v2_chr10_-_93310963_93310989	0.289218	Foxp2_Foxp3	ENSMUST00000151153.1|Elk3|ENSMUSG00000008398.8|ELK3, member of ETS oncogene family
mm10_v2_chr12_+_79029150_79029193	0.285816	Foxp2_Foxp3	ENSMUST00000039928.5|Plekhh1|ENSMUSG00000060716.6|pleckstrin homology domain containing, family H (with MyTH4 domain) member 1
mm10_v2_chr2_+_26973416_26973505	0.285189	Foxp2_Foxp3	ENSMUST00000014996.7|Adamts13|ENSMUSG00000014852.10|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 13 	ENSMUST00000102891.3|Adamts13|ENSMUSG00000014852.10|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 13
mm10_v2_chr18_+_77938452_77938477	0.284831	Foxp2_Foxp3	ENSMUST00000044622.5|Epg5|ENSMUSG00000039840.7|ectopic P-granules autophagy protein 5 homolog (C. elegans)
mm10_v2_chr2_+_176236860_176236860	0.284795	Foxp2_Foxp3	ENSMUST00000166464.1|2210418O10Rik|ENSMUSG00000078894.3|RIKEN cDNA 2210418O10 gene
mm10_v2_chr5_-_77115145_77115156	0.282365	Foxp2_Foxp3	ENSMUST00000081964.5|Hopx|ENSMUSG00000059325.8|HOP homeobox
mm10_v2_chr19_+_60144682_60144697	0.279914	Foxp2_Foxp3	ENSMUST00000065383.4|E330013P04Rik|ENSMUSG00000053117.4|RIKEN cDNA E330013P04 gene
mm10_v2_chr4_+_48663502_48663525	0.279366	Foxp2_Foxp3	ENSMUST00000030033.4|Murc|ENSMUSG00000028348.7|muscle-related coiled-coil protein
mm10_v2_chr15_-_3583146_3583188	0.279176	Foxp2_Foxp3	ENSMUST00000110698.2|Ghr|ENSMUSG00000055737.6|growth hormone receptor
mm10_v2_chr1_+_10056922_10056926	0.279111	Foxp2_Foxp3	ENSMUST00000149214.1|Cspp1|ENSMUSG00000056763.10|centrosome and spindle pole associated protein 1
mm10_v2_chr12_-_31950535_31950560	0.278627	Foxp2_Foxp3	ENSMUST00000172314.2|Hbp1|ENSMUSG00000002996.11|high mobility group box transcription factor 1
mm10_v2_chr15_-_53346118_53346169	0.276968	Foxp2_Foxp3	ENSMUST00000077273.2|Ext1|ENSMUSG00000061731.3|exostoses (multiple) 1
mm10_v2_chr19_+_55741884_55741919	0.275247	Foxp2_Foxp3	ENSMUST00000111658.3|Tcf7l2|ENSMUSG00000024985.12|transcription factor 7 like 2, T cell specific, HMG box 	ENSMUST00000111654.1|Tcf7l2|ENSMUSG00000024985.12|transcription factor 7 like 2, T cell specific, HMG box
mm10_v2_chr4_+_148602527_148602583	0.273889	Foxp2_Foxp3	ENSMUST00000105701.2|Masp2|ENSMUSG00000028979.11|mannan-binding lectin serine peptidase 2 	ENSMUST00000052060.6|Masp2|ENSMUSG00000028979.11|mannan-binding lectin serine peptidase 2
mm10_v2_chr10_+_69534208_69534222	0.27274	Foxp2_Foxp3	ENSMUST00000182439.1|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial 	ENSMUST00000092434.5|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial 	ENSMUST00000092432.5|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial 	ENSMUST00000092431.5|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial 	ENSMUST00000054167.8|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial 	ENSMUST00000047061.6|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial
mm10_v2_chr11_-_88718078_88718104	0.271177	Foxp2_Foxp3	ENSMUST00000092794.5|Msi2|ENSMUSG00000069769.7|musashi RNA-binding protein 2
mm10_v2_chr3_+_84925476_84925488	0.26835	Foxp2_Foxp3	ENSMUST00000107675.1|Fbxw7|ENSMUSG00000028086.8|F-box and WD-40 domain protein 7
mm10_v2_chr10_+_39732099_39732140	0.268094	Foxp2_Foxp3	ENSMUST00000019986.6|Rev3l|ENSMUSG00000019841.9|REV3-like, catalytic subunit of DNA polymerase zeta RAD54 like (S. cerevisiae)
mm10_v2_chr6_-_71440623_71440645	0.265992	Foxp2_Foxp3	ENSMUST00000002292.8|Rmnd5a|ENSMUSG00000002222.8|required for meiotic nuclear division 5 homolog A (S. cerevisiae)
mm10_v2_chr7_-_12422751_12422751	0.263555	Foxp2_Foxp3	ENSMUST00000080348.5|Zfp551|ENSMUSG00000034071.8|zinc fingr protein 551
mm10_v2_chr6_-_86765866_86765921	0.26294	Foxp2_Foxp3	ENSMUST00000113675.1|Anxa4|ENSMUSG00000029994.11|annexin A4
mm10_v2_chr7_+_80186835_80186904	0.259978	Foxp2_Foxp3	ENSMUST00000107383.1|Sema4b|ENSMUSG00000030539.7|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B 	ENSMUST00000032754.7|Sema4b|ENSMUSG00000030539.7|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B
mm10_v2_chr2_+_85050439_85050500	0.259825	Foxp2_Foxp3	ENSMUST00000111605.2|Tnks1bp1|ENSMUSG00000033955.6|tankyrase 1 binding protein 1
mm10_v2_chr10_+_29211637_29211649	0.257236	Foxp2_Foxp3	ENSMUST00000092627.4|9330159F19Rik|ENSMUSG00000004360.8|RIKEN cDNA 9330159F19 gene
mm10_v2_chr3_+_65109343_65109420	0.256375	Foxp2_Foxp3	ENSMUST00000159525.1|Kcnab1|ENSMUSG00000027827.10|potassium voltage-gated channel, shaker-related subfamily, beta member 1 	ENSMUST00000049230.8|Kcnab1|ENSMUSG00000027827.10|potassium voltage-gated channel, shaker-related subfamily, beta member 1
mm10_v2_chr10_-_26373956_26374088	0.25597	Foxp2_Foxp3	ENSMUST00000105519.3|L3mbtl3|ENSMUSG00000039089.8|l(3)mbt-like 3 (Drosophila) 	ENSMUST00000040219.6|L3mbtl3|ENSMUSG00000039089.8|l(3)mbt-like 3 (Drosophila)
mm10_v2_chrX_+_68678541_68678554	0.254726	Foxp2_Foxp3	ENSMUST00000088546.5|Fmr1|ENSMUSG00000000838.11|fragile X mental retardation syndrome 1
mm10_v2_chr13_+_83738874_83738887	0.252421	Foxp2_Foxp3	ENSMUST00000052354.4|C130071C03Rik|ENSMUSG00000050334.6|RIKEN cDNA C130071C03 gene
mm10_v2_chr6_-_148946146_148946182	0.250236	Foxp2_Foxp3	ENSMUST00000132696.1|Fam60a|ENSMUSG00000039985.8|family with sequence similarity 60, member A
mm10_v2_chr3_+_109573907_109573990	0.250026	Foxp2_Foxp3	ENSMUST00000106576.2|Vav3|ENSMUSG00000033721.10|vav 3 oncogene
mm10_v2_chr11_-_101226414_101226463	0.249015	Foxp2_Foxp3	ENSMUST00000100417.2|Ezh1|ENSMUSG00000006920.8|enhancer of zeste homolog 1 (Drosophila) 	ENSMUST00000107285.1|Ezh1|ENSMUSG00000006920.8|enhancer of zeste homolog 1 (Drosophila) 	ENSMUST00000107284.1|Ezh1|ENSMUSG00000006920.8|enhancer of zeste homolog 1 (Drosophila)
mm10_v2_chr11_-_88718223_88718294	0.248965	Foxp2_Foxp3	ENSMUST00000107909.1|Msi2|ENSMUSG00000069769.7|musashi RNA-binding protein 2
mm10_v2_chr5_-_99252839_99252927	0.248694	Foxp2_Foxp3	ENSMUST00000168092.1|Rasgef1b|ENSMUSG00000029333.8|RasGEF domain family, member 1B 	ENSMUST00000031276.8|Rasgef1b|ENSMUSG00000029333.8|RasGEF domain family, member 1B
mm10_v2_chr10_+_84576626_84576626	0.248021	Foxp2_Foxp3	ENSMUST00000020223.7|Tcp11l2|ENSMUSG00000020034.7|t-complex 11 (mouse) like 2
mm10_v2_chr2_+_112284561_112284610	0.247799	Foxp2_Foxp3	ENSMUST00000053666.7|Slc12a6|ENSMUSG00000027130.9|solute carrier family 12, member 6
mm10_v2_chr2_+_69723071_69723093	0.246433	Foxp2_Foxp3	ENSMUST00000040915.8|Ppig|ENSMUSG00000042133.10|peptidyl-prolyl isomerase G (cyclophilin G)
mm10_v2_chr19_+_26750939_26750967	0.245566	Foxp2_Foxp3	ENSMUST00000175953.1|Smarca2|ENSMUSG00000024921.10|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2
mm10_v2_chr2_+_32151074_32151262	0.24554	Foxp2_Foxp3	ENSMUST00000036691.7|Prrc2b|ENSMUSG00000039262.10|proline-rich coiled-coil 2B 	ENSMUST00000069817.8|Prrc2b|ENSMUSG00000039262.10|proline-rich coiled-coil 2B
mm10_v2_chr2_+_69722797_69722840	0.244815	Foxp2_Foxp3	ENSMUST00000090858.3|Ppig|ENSMUSG00000042133.10|peptidyl-prolyl isomerase G (cyclophilin G)
mm10_v2_chr9_+_78113275_78113346	0.244057	Foxp2_Foxp3	ENSMUST00000009972.5|Ick|ENSMUSG00000009828.9|intestinal cell kinase 	ENSMUST00000117330.1|Ick|ENSMUSG00000009828.9|intestinal cell kinase 	ENSMUST00000044551.7|Ick|ENSMUSG00000009828.9|intestinal cell kinase
mm10_v2_chr5_+_3928267_3928300	0.242532	Foxp2_Foxp3	ENSMUST00000044492.8|Akap9|ENSMUSG00000040407.11|A kinase (PRKA) anchor protein (yotiao) 9
mm10_v2_chr14_+_120275669_120275714	0.24044	Foxp2_Foxp3	ENSMUST00000088419.6|Mbnl2|ENSMUSG00000022139.10|muscleblind-like 2 	ENSMUST00000167459.1|Mbnl2|ENSMUSG00000022139.10|muscleblind-like 2
mm10_v2_chr8_+_19682268_19682270	0.238805	Foxp2_Foxp3	ENSMUST00000153710.1|Gm6483|ENSMUSG00000087153.1|predicted gene 6483 	ENSMUST00000127799.1|Gm6483|ENSMUSG00000087153.1|predicted gene 6483
mm10_v2_chr1_+_179546303_179546370	0.238494	Foxp2_Foxp3	ENSMUST00000040706.8|Cnst|ENSMUSG00000038949.8|consortin, connexin sorting protein
mm10_v2_chr3_-_152193803_152193831	0.236847	Foxp2_Foxp3	ENSMUST00000050073.6|Dnajb4|ENSMUSG00000028035.7|DnaJ (Hsp40) homolog, subfamily B, member 4
mm10_v2_chr16_+_33518278_33518340	0.234806	Foxp2_Foxp3	ENSMUST00000122427.1|Slc12a8|ENSMUSG00000035506.10|solute carrier family 12 (potassium/chloride transporters), member 8 	ENSMUST00000059056.8|Slc12a8|ENSMUSG00000035506.10|solute carrier family 12 (potassium/chloride transporters), member 8
mm10_v2_chr16_+_94425083_94425148	0.234497	Foxp2_Foxp3	ENSMUST00000141176.1|Ttc3|ENSMUSG00000040785.11|tetratricopeptide repeat domain 3
mm10_v2_chr9_+_70679016_70679116	0.234238	Foxp2_Foxp3	ENSMUST00000144537.1|Adam10|ENSMUSG00000054693.8|a disintegrin and metallopeptidase domain 10
mm10_v2_chr13_-_103764502_103764505	0.2306	Foxp2_Foxp3	ENSMUST00000074616.5|Srek1|ENSMUSG00000032621.7|splicing regulatory glutamine/lysine-rich protein 1
mm10_v2_chr17_+_70561739_70561787	0.230072	Foxp2_Foxp3	ENSMUST00000097288.2|Dlgap1|ENSMUSG00000003279.10|discs, large (Drosophila) homolog-associated protein 1
mm10_v2_chr1_-_133753681_133753857	0.229934	Foxp2_Foxp3	ENSMUST00000125659.1|Atp2b4|ENSMUSG00000026463.11|ATPase, Ca++ transporting, plasma membrane 4 	ENSMUST00000165602.2|Atp2b4|ENSMUSG00000026463.11|ATPase, Ca++ transporting, plasma membrane 4 	ENSMUST00000048953.7|Atp2b4|ENSMUSG00000026463.11|ATPase, Ca++ transporting, plasma membrane 4
mm10_v2_chr7_-_44849075_44849075	0.229282	Foxp2_Foxp3	ENSMUST00000047085.8|Tbc1d17|ENSMUSG00000038520.8|TBC1 domain family, member 17
mm10_v2_chr10_+_11281583_11281620	0.228898	Foxp2_Foxp3	ENSMUST00000070300.4|Fbxo30|ENSMUSG00000047648.7|F-box protein 30
mm10_v2_chr11_+_97685903_97685966	0.228515	Foxp2_Foxp3	ENSMUST00000107583.2|Cisd3|ENSMUSG00000078695.2|CDGSH iron sulfur domain 3
mm10_v2_chr1_+_36511867_36511903	0.224023	Foxp2_Foxp3	ENSMUST00000001166.7|Cnnm3|ENSMUSG00000001138.7|cyclin M3 	ENSMUST00000097776.3|Cnnm3|ENSMUSG00000001138.7|cyclin M3
mm10_v2_chr6_-_137169710_137169732	0.222209	Foxp2_Foxp3	ENSMUST00000117919.1|Rerg|ENSMUSG00000030222.7|RAS-like, estrogen-regulated, growth-inhibitor
mm10_v2_chr7_-_65371210_65371287	0.219313	Foxp2_Foxp3	ENSMUST00000102592.3|Tjp1|ENSMUSG00000030516.8|tight junction protein 1
mm10_v2_chr9_-_99358518_99358552	0.218031	Foxp2_Foxp3	ENSMUST00000042158.6|Esyt3|ENSMUSG00000037681.7|extended synaptotagmin-like protein 3
mm10_v2_chrM_+_11734_11757	0.217999	Foxp2_Foxp3	ENSMUST00000082418.1|mt-Nd5|ENSMUSG00000064367.1|mitochondrially encoded NADH dehydrogenase 5
mm10_v2_chr4_-_110290884_110290913	0.217366	Foxp2_Foxp3	ENSMUST00000142722.1|Elavl4|ENSMUSG00000028546.11|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)
mm10_v2_chr12_-_98737405_98737515	0.216757	Foxp2_Foxp3	ENSMUST00000170188.1|Ptpn21|ENSMUSG00000021009.8|protein tyrosine phosphatase, non-receptor type 21
mm10_v2_chr4_-_43653542_43653557	0.216115	Foxp2_Foxp3	ENSMUST00000084646.4|Spag8|ENSMUSG00000066196.5|sperm associated antigen 8
mm10_v2_chr16_-_74411292_74411430	0.215896	Foxp2_Foxp3	ENSMUST00000117200.1|Robo2|ENSMUSG00000052516.11|roundabout homolog 2 (Drosophila)
mm10_v2_chr10_-_49783259_49783582	0.215327	Foxp2_Foxp3	ENSMUST00000105484.3|Grik2|ENSMUSG00000056073.8|glutamate receptor, ionotropic, kainate 2 (beta 2) 	ENSMUST00000105486.1|Grik2|ENSMUSG00000056073.8|glutamate receptor, ionotropic, kainate 2 (beta 2) 	ENSMUST00000079751.2|Grik2|ENSMUSG00000056073.8|glutamate receptor, ionotropic, kainate 2 (beta 2) 	ENSMUST00000105485.1|Grik2|ENSMUSG00000056073.8|glutamate receptor, ionotropic, kainate 2 (beta 2)
mm10_v2_chr12_-_99393010_99393090	0.215228	Foxp2_Foxp3	ENSMUST00000177451.1|Foxn3|ENSMUSG00000033713.5|forkhead box N3
mm10_v2_chr18_-_6136057_6136098	0.214428	Foxp2_Foxp3	ENSMUST00000182559.1|Arhgap12|ENSMUSG00000041225.10|Rho GTPase activating protein 12
mm10_v2_chr9_-_53248106_53248117	0.211234	Foxp2_Foxp3	ENSMUST00000065630.6|Ddx10|ENSMUSG00000053289.7|DEAD (Asp-Glu-Ala-Asp) box polypeptide 10
mm10_v2_chr3_+_7366598_7366641	0.210887	Foxp2_Foxp3	ENSMUST00000028999.6|Pkia|ENSMUSG00000027499.7|protein kinase inhibitor, alpha
mm10_v2_chr6_-_5496296_5496316	0.210869	Foxp2_Foxp3	ENSMUST00000019721.4|Pdk4|ENSMUSG00000019577.4|pyruvate dehydrogenase kinase, isoenzyme 4
mm10_v2_chr14_+_31641051_31641082	0.208336	Foxp2_Foxp3	ENSMUST00000090147.6|Btd|ENSMUSG00000021900.10|biotinidase
mm10_v2_chr7_+_130692532_130692575	0.207525	Foxp2_Foxp3	ENSMUST00000033141.6|Tacc2|ENSMUSG00000030852.9|transforming, acidic coiled-coil containing protein 2
mm10_v2_chr11_+_3330401_3330541	0.206243	Foxp2_Foxp3	ENSMUST00000045153.4|Pik3ip1|ENSMUSG00000034614.8|phosphoinositide-3-kinase interacting protein 1
mm10_v2_chr2_-_104712122_104712180	0.205522	Foxp2_Foxp3	ENSMUST00000111118.1|Tcp11l1|ENSMUSG00000027175.4|t-complex 11 like 1 	ENSMUST00000028597.3|Tcp11l1|ENSMUSG00000027175.4|t-complex 11 like 1
mm10_v2_chr12_-_84450944_84451018	0.204626	Foxp2_Foxp3	ENSMUST00000085192.5|Aldh6a1|ENSMUSG00000021238.10|aldehyde dehydrogenase family 6, subfamily A1
mm10_v2_chr8_-_119558718_119558766	0.203895	Foxp2_Foxp3	ENSMUST00000081381.4|Mbtps1|ENSMUSG00000031835.9|membrane-bound transcription factor peptidase, site 1 	ENSMUST00000098362.3|Mbtps1|ENSMUSG00000031835.9|membrane-bound transcription factor peptidase, site 1
mm10_v2_chr15_+_80711292_80711340	0.202126	Foxp2_Foxp3	ENSMUST00000067689.7|Tnrc6b|ENSMUSG00000047888.9|trinucleotide repeat containing 6b
mm10_v2_chrX_+_68678624_68678639	0.20208	Foxp2_Foxp3	ENSMUST00000114656.1|Fmr1|ENSMUSG00000000838.11|fragile X mental retardation syndrome 1
mm10_v2_chr2_-_7396192_7396241	0.202062	Foxp2_Foxp3	ENSMUST00000137733.2|Celf2|ENSMUSG00000002107.12|CUGBP, Elav-like family member 2
mm10_v2_chr6_+_134830216_134830270	0.201743	Foxp2_Foxp3	ENSMUST00000111937.1|Crebl2|ENSMUSG00000032652.7|cAMP responsive element binding protein-like 2
mm10_v2_chr2_-_176917518_176917518	0.201722	Foxp2_Foxp3	ENSMUST00000108931.2|Gm14296|ENSMUSG00000074527.5|predicted gene 14296
mm10_v2_chr5_+_137630116_137630130	0.201692	Foxp2_Foxp3	ENSMUST00000175968.1|Lrch4|ENSMUSG00000093445.1|leucine-rich repeats and calponin homology (CH) domain containing 4
mm10_v2_chr18_-_39489776_39489868	0.199967	Foxp2_Foxp3	ENSMUST00000025300.6|Nr3c1|ENSMUSG00000024431.8|nuclear receptor subfamily 3, group C, member 1
mm10_v2_chr2_-_114201416_114201469	0.19987	Foxp2_Foxp3	ENSMUST00000050668.3|Zfp770|ENSMUSG00000040321.3|zinc finger protein 770
mm10_v2_chr17_-_65884902_65884937	0.199242	Foxp2_Foxp3	ENSMUST00000024905.9|Ralbp1|ENSMUSG00000024096.10|ralA binding protein 1
mm10_v2_chr9_-_82975475_82975493	0.199074	Foxp2_Foxp3	ENSMUST00000034787.5|Phip|ENSMUSG00000032253.7|pleckstrin homology domain interacting protein
mm10_v2_chr18_-_12121460_12121492	0.19829	Foxp2_Foxp3	ENSMUST00000055447.6|Tmem241|ENSMUSG00000049411.7|transmembrane protein 241 	ENSMUST00000050228.7|Tmem241|ENSMUSG00000049411.7|transmembrane protein 241 	ENSMUST00000092075.4|Tmem241|ENSMUSG00000049411.7|transmembrane protein 241
mm10_v2_chr7_+_24907618_24907647	0.196245	Foxp2_Foxp3	ENSMUST00000151121.1|Arhgef1|ENSMUSG00000040940.12|Rho guanine nucleotide exchange factor (GEF) 1
mm10_v2_chr17_-_29716969_29717028	0.195146	Foxp2_Foxp3	ENSMUST00000129091.1|Ccdc167|ENSMUSG00000024018.11|coiled-coil domain containing 167 	ENSMUST00000128751.1|Ccdc167|ENSMUSG00000024018.11|coiled-coil domain containing 167
mm10_v2_chr17_-_53463315_53463340	0.19513	Foxp2_Foxp3	ENSMUST00000024725.4|Efhb|ENSMUSG00000023931.4|EF hand domain family, member B
mm10_v2_chr1_+_87403705_87403726	0.194972	Foxp2_Foxp3	ENSMUST00000172736.1|Gigyf2|ENSMUSG00000048000.9|GRB10 interacting GYF protein 2
mm10_v2_chr13_+_63282142_63282142	0.193927	Foxp2_Foxp3	ENSMUST00000159152.1|2010111I01Rik|ENSMUSG00000021458.10|RIKEN cDNA 2010111I01 gene
mm10_v2_chr5_+_139389785_139389920	0.19384	Foxp2_Foxp3	ENSMUST00000100514.2|Gpr146|ENSMUSG00000044197.7|G protein-coupled receptor 146
mm10_v2_chrX_+_68678712_68678817	0.192954	Foxp2_Foxp3	ENSMUST00000114654.1|Fmr1|ENSMUSG00000000838.11|fragile X mental retardation syndrome 1 	ENSMUST00000114655.1|Fmr1|ENSMUSG00000000838.11|fragile X mental retardation syndrome 1 	ENSMUST00000114657.2|Fmr1|ENSMUSG00000000838.11|fragile X mental retardation syndrome 1 	ENSMUST00000114653.1|Fmr1|ENSMUSG00000000838.11|fragile X mental retardation syndrome 1
mm10_v2_chr19_+_55742056_55742066	0.192151	Foxp2_Foxp3	ENSMUST00000111659.2|Tcf7l2|ENSMUSG00000024985.12|transcription factor 7 like 2, T cell specific, HMG box
mm10_v2_chr6_-_39725448_39725478	0.191884	Foxp2_Foxp3	ENSMUST00000002487.8|Braf|ENSMUSG00000002413.9|Braf transforming gene
mm10_v2_chr2_-_175131864_175131864	0.190658	Foxp2_Foxp3	ENSMUST00000108929.2|Gm14399|ENSMUSG00000090093.2|predicted gene 14399
mm10_v2_chr1_+_132506230_132506259	0.190522	Foxp2_Foxp3	ENSMUST00000058167.1|Tmem81|ENSMUSG00000048174.1|transmembrane protein 81
mm10_v2_chr4_-_45012093_45012159	0.190382	Foxp2_Foxp3	ENSMUST00000131991.1|Zbtb5|ENSMUSG00000049657.9|zinc finger and BTB domain containing 5
mm10_v2_chr3_+_32436376_32436376	0.190086	Foxp2_Foxp3	ENSMUST00000108242.1|Pik3ca|ENSMUSG00000027665.7|phosphatidylinositol 3-kinase, catalytic, alpha polypeptide
mm10_v2_chr13_-_81710937_81711013	0.188765	Foxp2_Foxp3	ENSMUST00000161920.1|Polr3g|ENSMUSG00000035834.5|polymerase (RNA) III (DNA directed) polypeptide G 	ENSMUST00000048993.5|Polr3g|ENSMUSG00000035834.5|polymerase (RNA) III (DNA directed) polypeptide G
mm10_v2_chr4_+_11123950_11123980	0.188585	Foxp2_Foxp3	ENSMUST00000142297.1|Gm11827|ENSMUSG00000086765.1|predicted gene 11827
mm10_v2_chr2_-_28916412_28916440	0.187547	Foxp2_Foxp3	ENSMUST00000050776.2|Barhl1|ENSMUSG00000026805.8|BarH-like 1 (Drosophila) 	ENSMUST00000113849.1|Barhl1|ENSMUSG00000026805.8|BarH-like 1 (Drosophila)
mm10_v2_chr14_+_78849171_78849220	0.187439	Foxp2_Foxp3	ENSMUST00000040990.5|Vwa8|ENSMUSG00000058997.7|von Willebrand factor A domain containing 8
mm10_v2_chr4_+_116558056_116558090	0.187288	Foxp2_Foxp3	ENSMUST00000106475.1|Gpbp1l1|ENSMUSG00000034042.10|GC-rich promoter binding protein 1-like 1
mm10_v2_chr11_-_106789157_106789192	0.187191	Foxp2_Foxp3	ENSMUST00000129585.1|Ddx5|ENSMUSG00000020719.8|DEAD (Asp-Glu-Ala-Asp) box polypeptide 5
mm10_v2_chr7_-_133782721_133782762	0.186857	Foxp2_Foxp3	ENSMUST00000063669.1|Dhx32|ENSMUSG00000030986.6|DEAH (Asp-Glu-Ala-His) box polypeptide 32
mm10_v2_chr18_+_37447641_37447674	0.185751	Foxp2_Foxp3	ENSMUST00000052387.3|Pcdhb14|ENSMUSG00000044043.3|protocadherin beta 14
mm10_v2_chr7_+_6474088_6474088	0.184865	Foxp2_Foxp3	ENSMUST00000056144.5|Olfr1346|ENSMUSG00000054938.4|olfactory receptor 1346
mm10_v2_chr16_-_59555752_59555752	0.184733	Foxp2_Foxp3	ENSMUST00000179383.1|Crybg3|ENSMUSG00000022723.9|beta-gamma crystallin domain containing 3 	ENSMUST00000044604.8|Crybg3|ENSMUSG00000022723.9|beta-gamma crystallin domain containing 3
mm10_v2_chr4_-_43653560_43653594	0.183818	Foxp2_Foxp3	ENSMUST00000107870.2|Spag8|ENSMUSG00000066196.5|sperm associated antigen 8
mm10_v2_chr7_-_115824699_115824752	0.182423	Foxp2_Foxp3	ENSMUST00000169129.1|Sox6|ENSMUSG00000051910.7|SRY-box containing gene 6
mm10_v2_chr18_-_7626809_7626880	0.182215	Foxp2_Foxp3	ENSMUST00000115869.2|Mpp7|ENSMUSG00000057440.7|membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)
mm10_v2_chr2_+_120567687_120567738	0.181045	Foxp2_Foxp3	ENSMUST00000028743.3|Snap23|ENSMUSG00000027287.8|synaptosomal-associated protein 23 	ENSMUST00000116437.1|Snap23|ENSMUSG00000027287.8|synaptosomal-associated protein 23 	ENSMUST00000153580.1|Snap23|ENSMUSG00000027287.8|synaptosomal-associated protein 23 	ENSMUST00000142278.1|Snap23|ENSMUSG00000027287.8|synaptosomal-associated protein 23
mm10_v2_chr10_-_21160925_21160984	0.178513	Foxp2_Foxp3	ENSMUST00000020158.6|Myb|ENSMUSG00000019982.8|myeloblastosis oncogene
mm10_v2_chr10_+_127677064_127677099	0.178467	Foxp2_Foxp3	ENSMUST00000118612.1|Tmem194|ENSMUSG00000040195.5|transmembrane protein 194 	ENSMUST00000048099.4|Tmem194|ENSMUSG00000040195.5|transmembrane protein 194
mm10_v2_chr1_+_66386968_66386999	0.176667	Foxp2_Foxp3	ENSMUST00000145419.1|Map2|ENSMUSG00000015222.11|microtubule-associated protein 2
mm10_v2_chr7_+_30291941_30291968	0.176604	Foxp2_Foxp3	ENSMUST00000144508.1|Clip3|ENSMUSG00000013921.8|CAP-GLY domain containing linker protein 3
mm10_v2_chr8_+_45627946_45627975	0.175813	Foxp2_Foxp3	ENSMUST00000145458.1|Sorbs2|ENSMUSG00000031626.10|sorbin and SH3 domain containing 2
mm10_v2_chr4_+_97772734_97772848	0.171851	Foxp2_Foxp3	ENSMUST00000152023.1|Nfia|ENSMUSG00000028565.12|nuclear factor I/A
mm10_v2_chr7_+_105375053_105375098	0.170952	Foxp2_Foxp3	ENSMUST00000106805.2|Gm5901|ENSMUSG00000078611.2|predicted gene 5901
mm10_v2_chr3_+_76593550_76593550	0.169641	Foxp2_Foxp3	ENSMUST00000162471.1|Fstl5|ENSMUSG00000034098.8|follistatin-like 5
mm10_v2_chr4_-_11981265_11981265	0.16845	Foxp2_Foxp3	ENSMUST00000098260.2|Gm10604|ENSMUSG00000073995.2|predicted gene 10604
mm10_v2_chr1_+_180101144_180101144	0.166406	Foxp2_Foxp3	ENSMUST00000133890.1|Cdc42bpa|ENSMUSG00000026490.11|CDC42 binding protein kinase alpha
mm10_v2_chr14_-_45388772_45388836	0.165593	Foxp2_Foxp3	ENSMUST00000046191.7|Gnpnat1|ENSMUSG00000037722.7|glucosamine-phosphate N-acetyltransferase 1
mm10_v2_chrX_-_23285532_23285578	0.164169	Foxp2_Foxp3	ENSMUST00000115319.2|Klhl13|ENSMUSG00000036782.7|kelch-like 13
mm10_v2_chr5_+_16553488_16553550	0.163433	Foxp2_Foxp3	ENSMUST00000030683.3|Hgf|ENSMUSG00000028864.3|hepatocyte growth factor
mm10_v2_chr18_-_66022580_66022600	0.162746	Foxp2_Foxp3	ENSMUST00000143990.1|Lman1|ENSMUSG00000041891.9|lectin, mannose-binding, 1
mm10_v2_chr2_+_146855861_146855926	0.162672	Foxp2_Foxp3	ENSMUST00000099278.2|Plk1s1|ENSMUSG00000074749.4|polo-like kinase 1 substrate 1 	ENSMUST00000156232.1|Plk1s1|ENSMUSG00000074749.4|polo-like kinase 1 substrate 1
mm10_v2_chr12_+_52516077_52516077	0.161669	Foxp2_Foxp3	ENSMUST00000110725.1|Arhgap5|ENSMUSG00000035133.8|Rho GTPase activating protein 5
mm10_v2_chr11_+_78176711_78176761	0.161488	Foxp2_Foxp3	ENSMUST00000098545.5|Tlcd1|ENSMUSG00000019437.11|TLC domain containing 1
mm10_v2_chr14_-_31640878_31640980	0.160535	Foxp2_Foxp3	ENSMUST00000167066.1|Hacl1|ENSMUSG00000021884.11|2-hydroxyacyl-CoA lyase 1 	ENSMUST00000127204.2|Hacl1|ENSMUSG00000021884.11|2-hydroxyacyl-CoA lyase 1 	ENSMUST00000022437.8|Hacl1|ENSMUSG00000021884.11|2-hydroxyacyl-CoA lyase 1
mm10_v2_chr7_+_75455534_75455629	0.160534	Foxp2_Foxp3	ENSMUST00000147005.1|Akap13|ENSMUSG00000066406.8|A kinase (PRKA) anchor protein 13 	ENSMUST00000166315.1|Akap13|ENSMUSG00000066406.8|A kinase (PRKA) anchor protein 13
mm10_v2_chr1_+_60181495_60181591	0.159686	Foxp2_Foxp3	ENSMUST00000160834.1|Nbeal1|ENSMUSG00000073664.5|neurobeachin like 1
mm10_v2_chr14_-_52213379_52213379	0.159321	Foxp2_Foxp3	ENSMUST00000140603.1|Chd8|ENSMUSG00000053754.7|chromodomain helicase DNA binding protein 8
mm10_v2_chr7_+_141061274_141061311	0.158541	Foxp2_Foxp3	ENSMUST00000048002.5|B4galnt4|ENSMUSG00000055629.4|beta-1,4-N-acetyl-galactosaminyl transferase 4
mm10_v2_chr7_-_25788635_25788710	0.158507	Foxp2_Foxp3	ENSMUST00000002677.4|Axl|ENSMUSG00000002602.10|AXL receptor tyrosine kinase 	ENSMUST00000085948.4|Axl|ENSMUSG00000002602.10|AXL receptor tyrosine kinase
mm10_v2_chr18_-_6135888_6135999	0.158369	Foxp2_Foxp3	ENSMUST00000182383.1|Arhgap12|ENSMUSG00000041225.10|Rho GTPase activating protein 12 	ENSMUST00000062584.7|Arhgap12|ENSMUSG00000041225.10|Rho GTPase activating protein 12 	ENSMUST00000077128.6|Arhgap12|ENSMUSG00000041225.10|Rho GTPase activating protein 12 	ENSMUST00000182038.1|Arhgap12|ENSMUSG00000041225.10|Rho GTPase activating protein 12 	ENSMUST00000182213.1|Arhgap12|ENSMUSG00000041225.10|Rho GTPase activating protein 12
mm10_v2_chr7_-_65370908_65371015	0.158153	Foxp2_Foxp3	ENSMUST00000032729.6|Tjp1|ENSMUSG00000030516.8|tight junction protein 1
mm10_v2_chr2_-_73892530_73892555	0.158141	Foxp2_Foxp3	ENSMUST00000136958.1|Atf2|ENSMUSG00000027104.12|activating transcription factor 2 	ENSMUST00000112010.2|Atf2|ENSMUSG00000027104.12|activating transcription factor 2 	ENSMUST00000128531.1|Atf2|ENSMUSG00000027104.12|activating transcription factor 2 	ENSMUST00000112017.1|Atf2|ENSMUSG00000027104.12|activating transcription factor 2
mm10_v2_chr2_-_104028287_104028337	0.157215	Foxp2_Foxp3	ENSMUST00000056170.3|4931422A03Rik|ENSMUSG00000046085.7|RIKEN cDNA 4931422A03 gene
mm10_v2_chr8_-_64205970_64206011	0.156179	Foxp2_Foxp3	ENSMUST00000066166.4|Tll1|ENSMUSG00000053626.4|tolloid-like
mm10_v2_chr6_+_136954521_136954529	0.155791	Foxp2_Foxp3	ENSMUST00000137768.1|Pde6h|ENSMUSG00000064330.7|phosphodiesterase 6H, cGMP-specific, cone, gamma
mm10_v2_chr2_-_52558539_52558571	0.155748	Foxp2_Foxp3	ENSMUST00000102760.3|Cacnb4|ENSMUSG00000017412.9|calcium channel, voltage-dependent, beta 4 subunit 	ENSMUST00000102761.2|Cacnb4|ENSMUSG00000017412.9|calcium channel, voltage-dependent, beta 4 subunit
mm10_v2_chr15_+_9071252_9071273	0.155469	Foxp2_Foxp3	ENSMUST00000100789.4|Nadk2|ENSMUSG00000022253.8|NAD kinase 2, mitochondrial 	ENSMUST00000100790.3|Nadk2|ENSMUSG00000022253.8|NAD kinase 2, mitochondrial 	ENSMUST00000067760.4|Nadk2|ENSMUSG00000022253.8|NAD kinase 2, mitochondrial
mm10_v2_chr10_+_69925954_69926133	0.155211	Foxp2_Foxp3	ENSMUST00000181974.1|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial 	ENSMUST00000182795.1|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial 	ENSMUST00000182437.1|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial
mm10_v2_chrX_+_7909542_7909542	0.154988	Foxp2_Foxp3	ENSMUST00000086274.2|Gm10490|ENSMUSG00000073290.1|predicted gene 10490
mm10_v2_chr10_+_62920648_62920682	0.154963	Foxp2_Foxp3	ENSMUST00000144459.1|Slc25a16|ENSMUSG00000071253.2|solute carrier family 25 (mitochondrial carrier, Graves disease autoantigen), member 16
mm10_v2_chr11_-_106788845_106788883	0.154204	Foxp2_Foxp3	ENSMUST00000123339.1|Ddx5|ENSMUSG00000020719.8|DEAD (Asp-Glu-Ala-Asp) box polypeptide 5
mm10_v2_chr6_-_108185552_108185587	0.153427	Foxp2_Foxp3	ENSMUST00000167338.1|Sumf1|ENSMUSG00000030101.9|sulfatase modifying factor 1 	ENSMUST00000172188.1|Sumf1|ENSMUSG00000030101.9|sulfatase modifying factor 1 	ENSMUST00000032191.9|Sumf1|ENSMUSG00000030101.9|sulfatase modifying factor 1
mm10_v2_chr1_+_172698046_172698063	0.153258	Foxp2_Foxp3	ENSMUST00000038495.3|Crp|ENSMUSG00000037942.4|C-reactive protein, pentraxin-related
mm10_v2_chr11_+_97685794_97685845	0.150392	Foxp2_Foxp3	ENSMUST00000107584.1|Cisd3|ENSMUSG00000078695.2|CDGSH iron sulfur domain 3 	ENSMUST00000107585.2|Cisd3|ENSMUSG00000078695.2|CDGSH iron sulfur domain 3
mm10_v2_chr2_+_120567652_120567678	0.150121	Foxp2_Foxp3	ENSMUST00000110711.2|Snap23|ENSMUSG00000027287.8|synaptosomal-associated protein 23
mm10_v2_chr4_+_11191354_11191424	0.148856	Foxp2_Foxp3	ENSMUST00000170901.1|Ccne2|ENSMUSG00000028212.10|cyclin E2
mm10_v2_chr8_+_70724064_70724078	0.147837	Foxp2_Foxp3	ENSMUST00000034307.7|Pde4c|ENSMUSG00000031842.7|phosphodiesterase 4C, cAMP specific 	ENSMUST00000110095.2|Pde4c|ENSMUSG00000031842.7|phosphodiesterase 4C, cAMP specific
mm10_v2_chrX_+_94234921_94234972	0.14764	Foxp2_Foxp3	ENSMUST00000113908.1|Klhl15|ENSMUSG00000043929.10|kelch-like 15 	ENSMUST00000113916.3|Klhl15|ENSMUSG00000043929.10|kelch-like 15
mm10_v2_chr5_-_31048014_31048079	0.14764	Foxp2_Foxp3	ENSMUST00000137223.1|Slc5a6|ENSMUSG00000006641.6|solute carrier family 5 (sodium-dependent vitamin transporter), member 6
mm10_v2_chr5_+_21372642_21372714	0.147102	Foxp2_Foxp3	ENSMUST00000035799.5|Fgl2|ENSMUSG00000039899.5|fibrinogen-like protein 2
mm10_v2_chr2_-_58052832_58052870	0.146999	Foxp2_Foxp3	ENSMUST00000090940.5|Ermn|ENSMUSG00000026830.9|ermin, ERM-like protein
mm10_v2_chr15_-_50890396_50890463	0.144903	Foxp2_Foxp3	ENSMUST00000185183.1|Trps1|ENSMUSG00000038679.10|trichorhinophalangeal syndrome I (human)
mm10_v2_chr13_+_75089826_75089886	0.144726	Foxp2_Foxp3	ENSMUST00000022075.4|Pcsk1|ENSMUSG00000021587.4|proprotein convertase subtilisin/kexin type 1
mm10_v2_chr11_+_53567361_53567526	0.143476	Foxp2_Foxp3	ENSMUST00000057330.8|Kif3a|ENSMUSG00000018395.13|kinesin family member 3A 	ENSMUST00000120613.2|Kif3a|ENSMUSG00000018395.13|kinesin family member 3A 	ENSMUST00000173744.1|Kif3a|ENSMUSG00000018395.13|kinesin family member 3A 	ENSMUST00000118353.2|Kif3a|ENSMUSG00000018395.13|kinesin family member 3A
mm10_v2_chr9_-_103230262_103230307	0.14256	Foxp2_Foxp3	ENSMUST00000165296.1|Trf|ENSMUSG00000032554.9|transferrin 	ENSMUST00000112645.1|Trf|ENSMUSG00000032554.9|transferrin 	ENSMUST00000166836.1|Gm20425|ENSMUSG00000090639.1|predicted gene 20425
mm10_v2_chr6_-_93913678_93913719	0.142159	Foxp2_Foxp3	ENSMUST00000093769.5|Magi1|ENSMUSG00000045095.10|membrane associated guanylate kinase, WW and PDZ domain containing 1
mm10_v2_chr12_+_74297474_74297474	0.141028	Foxp2_Foxp3	ENSMUST00000072100.3|Dbpht2|ENSMUSG00000029878.5|DNA binding protein with his-thr domain
mm10_v2_chr18_-_38918642_38918771	0.140955	Foxp2_Foxp3	ENSMUST00000040647.4|Fgf1|ENSMUSG00000036585.9|fibroblast growth factor 1
mm10_v2_chr12_-_55080098_55080121	0.138233	Foxp2_Foxp3	ENSMUST00000021406.5|2700097O09Rik|ENSMUSG00000062198.4|RIKEN cDNA 2700097O09 gene
mm10_v2_chr12_-_84400851_84400900	0.137445	Foxp2_Foxp3	ENSMUST00000117286.1|Entpd5|ENSMUSG00000021236.10|ectonucleoside triphosphate diphosphohydrolase 5
mm10_v2_chr9_+_70678950_70679010	0.137241	Foxp2_Foxp3	ENSMUST00000067880.6|Adam10|ENSMUSG00000054693.8|a disintegrin and metallopeptidase domain 10
mm10_v2_chr8_-_3279606_3279622	0.136422	Foxp2_Foxp3	ENSMUST00000091291.4|Insr|ENSMUSG00000005534.9|insulin receptor
mm10_v2_chr13_-_52929640_52929681	0.134564	Foxp2_Foxp3	ENSMUST00000120535.1|Auh|ENSMUSG00000021460.10|AU RNA binding protein/enoyl-coenzyme A hydratase 	ENSMUST00000119311.1|Auh|ENSMUSG00000021460.10|AU RNA binding protein/enoyl-coenzyme A hydratase 	ENSMUST00000021913.9|Auh|ENSMUSG00000021460.10|AU RNA binding protein/enoyl-coenzyme A hydratase 	ENSMUST00000110031.3|Auh|ENSMUSG00000021460.10|AU RNA binding protein/enoyl-coenzyme A hydratase
mm10_v2_chr9_+_53850243_53850257	0.133285	Foxp2_Foxp3	ENSMUST00000048485.5|Sln|ENSMUSG00000042045.5|sarcolipin
mm10_v2_chr1_-_54926311_54926402	0.132948	Foxp2_Foxp3	ENSMUST00000179030.1|Ankrd44|ENSMUSG00000052331.8|ankyrin repeat domain 44 	ENSMUST00000044359.9|Ankrd44|ENSMUSG00000052331.8|ankyrin repeat domain 44
mm10_v2_chr2_+_27676440_27676454	0.1317	Foxp2_Foxp3	ENSMUST00000129514.1|Rxra|ENSMUSG00000015846.8|retinoid X receptor alpha
mm10_v2_chr7_+_24271568_24271568	0.129622	Foxp2_Foxp3	ENSMUST00000032696.6|Zfp93|ENSMUSG00000055305.9|zinc finger protein 93
mm10_v2_chr8_+_20567716_20567716	0.124651	Foxp2_Foxp3	ENSMUST00000178995.1|Gm21092|ENSMUSG00000095403.1|predicted gene, 21092
mm10_v2_chr4_+_43669610_43669678	0.124592	Foxp2_Foxp3	ENSMUST00000107866.1|Tmem8b|ENSMUSG00000078716.3|transmembrane protein 8B
mm10_v2_chr10_+_76449074_76449093	0.124308	Foxp2_Foxp3	ENSMUST00000092406.5|2610028H24Rik|ENSMUSG00000009114.11|RIKEN cDNA 2610028H24 gene
mm10_v2_chr12_+_71170589_71170589	0.124169	Foxp2_Foxp3	ENSMUST00000129376.1|2700049A03Rik|ENSMUSG00000034601.10|RIKEN cDNA 2700049A03 gene
mm10_v2_chr18_+_44380479_44380554	0.121018	Foxp2_Foxp3	ENSMUST00000025350.8|Dcp2|ENSMUSG00000024472.8|DCP2 decapping enzyme homolog (S. cerevisiae)
mm10_v2_chr12_-_11265768_11265816	0.120878	Foxp2_Foxp3	ENSMUST00000166117.1|Gen1|ENSMUSG00000051235.8|Gen homolog 1, endonuclease (Drosophila)
mm10_v2_chr11_-_17008647_17008702	0.12052	Foxp2_Foxp3	ENSMUST00000102881.3|Plek|ENSMUSG00000020120.9|pleckstrin
mm10_v2_chr2_+_15049395_15049447	0.119172	Foxp2_Foxp3	ENSMUST00000017562.6|Arl5b|ENSMUSG00000017418.7|ADP-ribosylation factor-like 5B
mm10_v2_chr9_+_110333402_110333636	0.118549	Foxp2_Foxp3	ENSMUST00000133114.1|Scap|ENSMUSG00000032485.8|SREBF chaperone 	ENSMUST00000125759.1|Scap|ENSMUSG00000032485.8|SREBF chaperone
mm10_v2_chr2_-_51973219_51973234	0.118056	Foxp2_Foxp3	ENSMUST00000028314.2|Nmi|ENSMUSG00000026946.3|N-myc (and STAT) interactor
mm10_v2_chr13_+_16014457_16014475	0.116698	Foxp2_Foxp3	ENSMUST00000164993.1|Inhba|ENSMUSG00000041324.7|inhibin beta-A
mm10_v2_chr2_+_19658055_19658072	0.116396	Foxp2_Foxp3	ENSMUST00000052168.4|Otud1|ENSMUSG00000043415.4|OTU domain containing 1
mm10_v2_chr18_+_37333853_37333946	0.11612	Foxp2_Foxp3	ENSMUST00000061717.2|Pcdhb6|ENSMUSG00000051678.3|protocadherin beta 6
mm10_v2_chr18_+_37742088_37742137	0.116074	Foxp2_Foxp3	ENSMUST00000003599.6|Pcdhga9|ENSMUSG00000023036.8|protocadherin gamma subfamily A, 9
mm10_v2_chr1_+_106171752_106171879	0.115949	Foxp2_Foxp3	ENSMUST00000061047.6|Phlpp1|ENSMUSG00000044340.6|PH domain and leucine rich repeat protein phosphatase 1
mm10_v2_chr14_+_73237891_73238007	0.11461	Foxp2_Foxp3	ENSMUST00000044405.6|Lpar6|ENSMUSG00000033446.6|lysophosphatidic acid receptor 6
mm10_v2_chr16_-_50432340_50432409	0.11343	Foxp2_Foxp3	ENSMUST00000066037.6|Bbx|ENSMUSG00000022641.9|bobby sox homolog (Drosophila) 	ENSMUST00000089399.4|Bbx|ENSMUSG00000022641.9|bobby sox homolog (Drosophila) 	ENSMUST00000089404.3|Bbx|ENSMUSG00000022641.9|bobby sox homolog (Drosophila) 	ENSMUST00000114477.1|Bbx|ENSMUSG00000022641.9|bobby sox homolog (Drosophila) 	ENSMUST00000138166.1|Bbx|ENSMUSG00000022641.9|bobby sox homolog (Drosophila)
mm10_v2_chr2_+_60209887_60210073	0.111681	Foxp2_Foxp3	ENSMUST00000102748.4|March7|ENSMUSG00000026977.11|membrane-associated ring finger (C3HC4) 7 	ENSMUST00000102747.1|March7|ENSMUSG00000026977.11|membrane-associated ring finger (C3HC4) 7
mm10_v2_chr3_+_135825648_135825664	0.110155	Foxp2_Foxp3	ENSMUST00000180196.1|Slc39a8|ENSMUSG00000053897.9|solute carrier family 39 (metal ion transporter), member 8
mm10_v2_chr7_+_127800844_127800941	0.108798	Foxp2_Foxp3	ENSMUST00000106271.1|Hsd3b7|ENSMUSG00000042289.5|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7 	ENSMUST00000138432.1|Hsd3b7|ENSMUSG00000042289.5|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7
mm10_v2_chr7_+_140763739_140763828	0.107592	Foxp2_Foxp3	ENSMUST00000026552.7|Cyp2e1|ENSMUSG00000025479.8|cytochrome P450, family 2, subfamily e, polypeptide 1
mm10_v2_chr9_-_44802951_44802961	0.107234	Foxp2_Foxp3	ENSMUST00000044694.6|Ttc36|ENSMUSG00000039438.6|tetratricopeptide repeat domain 36
mm10_v2_chr11_+_43433720_43433783	0.107224	Foxp2_Foxp3	ENSMUST00000126128.1|Slu7|ENSMUSG00000020409.4|SLU7 splicing factor homolog (S. cerevisiae) 	ENSMUST00000151880.1|Slu7|ENSMUSG00000020409.4|SLU7 splicing factor homolog (S. cerevisiae) 	ENSMUST00000020681.3|Slu7|ENSMUSG00000020409.4|SLU7 splicing factor homolog (S. cerevisiae)
mm10_v2_chr3_+_84593547_84593574	0.1059	Foxp2_Foxp3	ENSMUST00000062623.3|Tigd4|ENSMUSG00000047819.3|tigger transposable element derived 4
mm10_v2_chr11_+_87578384_87578470	0.105088	Foxp2_Foxp3	ENSMUST00000107962.1|Sept4|ENSMUSG00000020486.12|septin 4 	ENSMUST00000122067.1|Sept4|ENSMUSG00000020486.12|septin 4
mm10_v2_chr2_-_66440753_66440846	0.104597	Foxp2_Foxp3	ENSMUST00000112371.2|Scn1a|ENSMUSG00000064329.7|sodium channel, voltage-gated, type I, alpha 	ENSMUST00000138910.1|Scn1a|ENSMUSG00000064329.7|sodium channel, voltage-gated, type I, alpha
mm10_v2_chr10_+_127421208_127421235	0.103697	Foxp2_Foxp3	ENSMUST00000168780.1|R3hdm2|ENSMUSG00000025404.9|R3H domain containing 2
mm10_v2_chr19_-_58455161_58455324	0.103154	Foxp2_Foxp3	ENSMUST00000135730.1|Gfra1|ENSMUSG00000025089.9|glial cell line derived neurotrophic factor family receptor alpha 1 	ENSMUST00000152507.1|Gfra1|ENSMUSG00000025089.9|glial cell line derived neurotrophic factor family receptor alpha 1
mm10_v2_chr10_-_5069044_5069079	0.102563	Foxp2_Foxp3	ENSMUST00000095899.3|Syne1|ENSMUSG00000019769.10|spectrin repeat containing, nuclear envelope 1
mm10_v2_chr11_-_100397740_100397792	0.102363	Foxp2_Foxp3	ENSMUST00000001592.8|Jup|ENSMUSG00000001552.8|junction plakoglobin 	ENSMUST00000107403.1|Jup|ENSMUSG00000001552.8|junction plakoglobin
mm10_v2_chr3_+_96833218_96833257	0.101904	Foxp2_Foxp3	ENSMUST00000128789.1|Pdzk1|ENSMUSG00000038298.8|PDZ domain containing 1
mm10_v2_chr11_-_116110211_116110259	0.101826	Foxp2_Foxp3	ENSMUST00000106441.1|Trim47|ENSMUSG00000020773.5|tripartite motif-containing 47 	ENSMUST00000021120.5|Trim47|ENSMUSG00000020773.5|tripartite motif-containing 47
mm10_v2_chr12_-_84400929_84400946	0.101189	Foxp2_Foxp3	ENSMUST00000122194.1|Entpd5|ENSMUSG00000021236.10|ectonucleoside triphosphate diphosphohydrolase 5
mm10_v2_chr4_+_141115660_141115660	0.100102	Foxp2_Foxp3	ENSMUST00000181450.1|4921514A10Rik|ENSMUSG00000097620.1|RIKEN cDNA 4921514A10 gene
mm10_v2_chr1_+_66468364_66468435	0.099222	Foxp2_Foxp3	ENSMUST00000061620.9|Unc80|ENSMUSG00000055567.10|unc-80 homolog (C. elegans)
mm10_v2_chr3_+_137623672_137623727	0.0986757	Foxp2_Foxp3	ENSMUST00000053855.7|Ddit4l|ENSMUSG00000046818.7|DNA-damage-inducible transcript 4-like
mm10_v2_chr11_-_86807624_86807746	0.0985217	Foxp2_Foxp3	ENSMUST00000018569.7|Dhx40|ENSMUSG00000018425.12|DEAH (Asp-Glu-Ala-His) box polypeptide 40
mm10_v2_chr2_-_154613425_154613444	0.0977042	Foxp2_Foxp3	ENSMUST00000181369.1|4930519P11Rik|ENSMUSG00000097602.1|RIKEN cDNA 4930519P11 gene
mm10_v2_chr18_-_15063560_15063617	0.0954652	Foxp2_Foxp3	ENSMUST00000168989.1|Kctd1|ENSMUSG00000036225.8|potassium channel tetramerisation domain containing 1
mm10_v2_chr15_-_51991679_51991760	0.0950506	Foxp2_Foxp3	ENSMUST00000022927.9|Rad21|ENSMUSG00000022314.9|RAD21 homolog (S. pombe)
mm10_v2_chrX_+_163911401_163911439	0.0949345	Foxp2_Foxp3	ENSMUST00000140845.1|Ap1s2|ENSMUSG00000031367.9|adaptor-related protein complex 1, sigma 2 subunit
mm10_v2_chr18_+_31609512_31609512	0.0933416	Foxp2_Foxp3	ENSMUST00000164667.1|B930094E09Rik|ENSMUSG00000092124.1|RIKEN cDNA B930094E09 gene
mm10_v2_chr5_-_148392810_148392816	0.0926812	Foxp2_Foxp3	ENSMUST00000138257.1|Slc7a1|ENSMUSG00000041313.8|solute carrier family 7 (cationic amino acid transporter, y+ system), member 1
mm10_v2_chr1_-_180245757_180245911	0.092539	Foxp2_Foxp3	ENSMUST00000111104.1|Psen2|ENSMUSG00000010609.9|presenilin 2
mm10_v2_chr15_-_79285502_79285537	0.092181	Foxp2_Foxp3	ENSMUST00000165408.1|Baiap2l2|ENSMUSG00000018126.9|BAI1-associated protein 2-like 2
mm10_v2_chr9_-_45955170_45955186	0.0920481	Foxp2_Foxp3	ENSMUST00000162072.1|Sidt2|ENSMUSG00000034908.9|SID1 transmembrane family, member 2
mm10_v2_chr11_-_50210765_50210827	0.0915912	Foxp2_Foxp3	ENSMUST00000143379.1|Sqstm1|ENSMUSG00000015837.9|sequestosome 1 	ENSMUST00000015981.5|Sqstm1|ENSMUSG00000015837.9|sequestosome 1 	ENSMUST00000102774.4|Sqstm1|ENSMUSG00000015837.9|sequestosome 1
mm10_v2_chr11_-_96829483_96829502	0.089416	Foxp2_Foxp3	ENSMUST00000167149.1|Nfe2l1|ENSMUSG00000038615.11|nuclear factor, erythroid derived 2,-like 1
mm10_v2_chr5_+_86804508_86804564	0.0885059	Foxp2_Foxp3	ENSMUST00000038384.7|Ythdc1|ENSMUSG00000035851.8|YTH domain containing 1
mm10_v2_chr5_+_86804214_86804276	0.0884512	Foxp2_Foxp3	ENSMUST00000119339.1|Ythdc1|ENSMUSG00000035851.8|YTH domain containing 1 	ENSMUST00000120498.1|Ythdc1|ENSMUSG00000035851.8|YTH domain containing 1
mm10_v2_chr13_+_21362826_21362883	0.0883976	Foxp2_Foxp3	ENSMUST00000053293.6|Zscan12|ENSMUSG00000036721.7|zinc finger and SCAN domain containing 12
mm10_v2_chr10_-_14718191_14718228	0.0870805	Foxp2_Foxp3	ENSMUST00000020016.4|Gje1|ENSMUSG00000019867.4|gap junction protein, epsilon 1
mm10_v2_chr3_+_96557950_96557968	0.0862152	Foxp2_Foxp3	ENSMUST00000074519.6|Txnip|ENSMUSG00000038393.8|thioredoxin interacting protein 	ENSMUST00000049093.7|Txnip|ENSMUSG00000038393.8|thioredoxin interacting protein
mm10_v2_chr12_+_77238093_77238122	0.0853757	Foxp2_Foxp3	ENSMUST00000177595.1|Fut8|ENSMUSG00000021065.9|fucosyltransferase 8 	ENSMUST00000171770.2|Fut8|ENSMUSG00000021065.9|fucosyltransferase 8
mm10_v2_chr5_+_142629537_142629593	0.0851285	Foxp2_Foxp3	ENSMUST00000036872.9|Wipi2|ENSMUSG00000029578.9|WD repeat domain, phosphoinositide interacting 2 	ENSMUST00000110778.1|Wipi2|ENSMUSG00000029578.9|WD repeat domain, phosphoinositide interacting 2
mm10_v2_chr14_+_54259227_54259241	0.0850928	Foxp2_Foxp3	ENSMUST00000041197.7|Abhd4|ENSMUSG00000040997.7|abhydrolase domain containing 4
mm10_v2_chr2_+_61578549_61578617	0.0848981	Foxp2_Foxp3	ENSMUST00000112502.1|Tank|ENSMUSG00000064289.9|TRAF family member-associated Nf-kappa B activator 	ENSMUST00000078074.2|Tank|ENSMUSG00000064289.9|TRAF family member-associated Nf-kappa B activator
mm10_v2_chr18_-_39489880_39489915	0.0836392	Foxp2_Foxp3	ENSMUST00000152853.1|Nr3c1|ENSMUSG00000024431.8|nuclear receptor subfamily 3, group C, member 1
mm10_v2_chr10_+_96616998_96617015	0.0835617	Foxp2_Foxp3	ENSMUST00000038377.7|Btg1|ENSMUSG00000036478.7|B cell translocation gene 1, anti-proliferative
mm10_v2_chr11_-_107348130_107348179	0.0828684	Foxp2_Foxp3	ENSMUST00000134763.1|Pitpnc1|ENSMUSG00000040430.12|phosphatidylinositol transfer protein, cytoplasmic 1
mm10_v2_chr13_-_107890059_107890073	0.0826734	Foxp2_Foxp3	ENSMUST00000105097.2|Zswim6|ENSMUSG00000032846.9|zinc finger SWIM-type containing 6
mm10_v2_chr14_-_68655804_68655842	0.0815755	Foxp2_Foxp3	ENSMUST00000111072.1|Adam28|ENSMUSG00000014725.8|a disintegrin and metallopeptidase domain 28 	ENSMUST00000022642.5|Adam28|ENSMUSG00000014725.8|a disintegrin and metallopeptidase domain 28
mm10_v2_chr9_+_70656248_70656261	0.0814961	Foxp2_Foxp3	ENSMUST00000098589.2|Gm10642|ENSMUSG00000074213.2|predicted gene 10642
mm10_v2_chr5_-_34187670_34187749	0.0814876	Foxp2_Foxp3	ENSMUST00000042701.6|Mxd4|ENSMUSG00000037235.7|Max dimerization protein 4 	ENSMUST00000119171.1|Mxd4|ENSMUSG00000037235.7|Max dimerization protein 4
mm10_v2_chr8_-_46294592_46294671	0.0813619	Foxp2_Foxp3	ENSMUST00000058636.7|Helt|ENSMUSG00000047171.7|helt bHLH transcription factor
mm10_v2_chr6_+_29859662_29859685	0.0811045	Foxp2_Foxp3	ENSMUST00000128927.2|Ahcyl2|ENSMUSG00000029772.11|S-adenosylhomocysteine hydrolase-like 2
mm10_v2_chrX_+_161717498_161717627	0.0809001	Foxp2_Foxp3	ENSMUST00000061514.7|Rai2|ENSMUSG00000043518.7|retinoic acid induced 2
mm10_v2_chr11_-_115808068_115808106	0.0804911	Foxp2_Foxp3	ENSMUST00000132780.1|Caskin2|ENSMUSG00000034471.6|CASK-interacting protein 2
mm10_v2_chr7_+_126776939_126777213	0.0786872	Foxp2_Foxp3	ENSMUST00000038614.5|Ypel3|ENSMUSG00000042675.9|yippee-like 3 (Drosophila) 	ENSMUST00000170882.1|Ypel3|ENSMUSG00000042675.9|yippee-like 3 (Drosophila) 	ENSMUST00000106359.1|Ypel3|ENSMUSG00000042675.9|yippee-like 3 (Drosophila) 	ENSMUST00000106357.1|Ypel3|ENSMUSG00000042675.9|yippee-like 3 (Drosophila) 	ENSMUST00000145762.1|Ypel3|ENSMUSG00000042675.9|yippee-like 3 (Drosophila) 	ENSMUST00000132643.1|Ypel3|ENSMUSG00000042675.9|yippee-like 3 (Drosophila) 	ENSMUST00000106356.1|Ypel3|ENSMUSG00000042675.9|yippee-like 3 (Drosophila)
mm10_v2_chr7_-_80402743_80402762	0.0786779	Foxp2_Foxp3	ENSMUST00000122232.1|Furin|ENSMUSG00000030530.9|furin (paired basic amino acid cleaving enzyme)
mm10_v2_chr9_+_57148180_57148180	0.0782532	Foxp2_Foxp3	ENSMUST00000105102.2|Gm16493|ENSMUSG00000078306.2|predicted gene 16493
mm10_v2_chr6_+_29859686_29859710	0.077255	Foxp2_Foxp3	ENSMUST00000134438.1|Ahcyl2|ENSMUSG00000029772.11|S-adenosylhomocysteine hydrolase-like 2
mm10_v2_chr2_-_72986716_72986716	0.0766702	Foxp2_Foxp3	ENSMUST00000112062.1|Gm11084|ENSMUSG00000079286.1|predicted gene 11084
mm10_v2_chr2_+_91730127_91730225	0.0752372	Foxp2_Foxp3	ENSMUST00000099712.3|Ambra1|ENSMUSG00000040506.10|autophagy/beclin 1 regulator 1 	ENSMUST00000111317.2|Ambra1|ENSMUSG00000040506.10|autophagy/beclin 1 regulator 1 	ENSMUST00000111316.2|Ambra1|ENSMUSG00000040506.10|autophagy/beclin 1 regulator 1 	ENSMUST00000045705.7|Ambra1|ENSMUSG00000040506.10|autophagy/beclin 1 regulator 1
mm10_v2_chr6_-_106800051_106800095	0.0736732	Foxp2_Foxp3	ENSMUST00000013882.7|Crbn|ENSMUSG00000005362.8|cereblon 	ENSMUST00000049675.4|Crbn|ENSMUSG00000005362.8|cereblon 	ENSMUST00000113239.3|Crbn|ENSMUSG00000005362.8|cereblon
mm10_v2_chr2_-_156111954_156111978	0.0731225	Foxp2_Foxp3	ENSMUST00000059647.5|Rbm12|ENSMUSG00000089824.4|RNA binding motif protein 12 	ENSMUST00000109604.2|Rbm12|ENSMUSG00000089824.4|RNA binding motif protein 12 	ENSMUST00000142960.2|Cpne1|ENSMUSG00000074643.6|copine I 	ENSMUST00000138068.1|Rbm12|ENSMUSG00000089824.4|RNA binding motif protein 12 	ENSMUST00000136296.2|Cpne1|ENSMUSG00000074643.6|copine I 	ENSMUST00000128499.1|Rbm12|ENSMUSG00000089824.4|RNA binding motif protein 12
mm10_v2_chr1_+_57377593_57377689	0.0725402	Foxp2_Foxp3	ENSMUST00000042734.2|1700066M21Rik|ENSMUSG00000038323.2|RIKEN cDNA 1700066M21 gene
mm10_v2_chr11_+_114851142_114851173	0.0722639	Foxp2_Foxp3	ENSMUST00000133245.1|Gprc5c|ENSMUSG00000051043.10|G protein-coupled receptor, family C, group 5, member C 	ENSMUST00000122967.2|Gprc5c|ENSMUSG00000051043.10|G protein-coupled receptor, family C, group 5, member C
mm10_v2_chr9_+_108648720_108648840	0.0722285	Foxp2_Foxp3	ENSMUST00000098384.2|Gm10621|ENSMUSG00000074075.2|predicted gene 10621
mm10_v2_chr3_+_90254163_90254252	0.0706561	Foxp2_Foxp3	ENSMUST00000029545.8|Crtc2|ENSMUSG00000027936.12|CREB regulated transcription coactivator 2
mm10_v2_chr10_+_90071095_90071117	0.067192	Foxp2_Foxp3	ENSMUST00000183109.1|Anks1b|ENSMUSG00000058589.8|ankyrin repeat and sterile alpha motif domain containing 1B
mm10_v2_chr2_+_164486455_164486655	0.0651711	Foxp2_Foxp3	ENSMUST00000069385.8|Dbndd2|ENSMUSG00000017734.9|dysbindin (dystrobrevin binding protein 1) domain containing 2 	ENSMUST00000143690.1|Dbndd2|ENSMUSG00000017734.9|dysbindin (dystrobrevin binding protein 1) domain containing 2
mm10_v2_chr18_-_88927447_88927481	0.0642697	Foxp2_Foxp3	ENSMUST00000147313.1|Socs6|ENSMUSG00000056153.8|suppressor of cytokine signaling 6
mm10_v2_chr5_+_31251678_31251728	0.0638342	Foxp2_Foxp3	ENSMUST00000054829.7|Krtcap3|ENSMUSG00000029149.8|keratinocyte associated protein 3 	ENSMUST00000114570.1|Krtcap3|ENSMUSG00000029149.8|keratinocyte associated protein 3 	ENSMUST00000075611.7|Krtcap3|ENSMUSG00000029149.8|keratinocyte associated protein 3
mm10_v2_chr2_-_172940299_172940349	0.0629067	Foxp2_Foxp3	ENSMUST00000009143.7|Bmp7|ENSMUSG00000008999.7|bone morphogenetic protein 7
mm10_v2_chr18_+_37504264_37504296	0.0618381	Foxp2_Foxp3	ENSMUST00000052179.6|Pcdhb20|ENSMUSG00000046191.6|protocadherin beta 20
mm10_v2_chr4_-_143299498_143299564	0.0614381	Foxp2_Foxp3	ENSMUST00000030317.7|Pdpn|ENSMUSG00000028583.8|podoplanin
mm10_v2_chr2_+_24976033_24976110	0.0592119	Foxp2_Foxp3	ENSMUST00000045295.7|Pnpla7|ENSMUSG00000036833.10|patatin-like phospholipase domain containing 7 	ENSMUST00000153618.1|Pnpla7|ENSMUSG00000036833.10|patatin-like phospholipase domain containing 7 	ENSMUST00000152777.1|Pnpla7|ENSMUSG00000036833.10|patatin-like phospholipase domain containing 7
mm10_v2_chrM_-_14060_14074	0.0591596	Foxp2_Foxp3	ENSMUST00000082419.1|mt-Nd6|ENSMUSG00000064368.1|mitochondrially encoded NADH dehydrogenase 6
mm10_v2_chr15_-_50882806_50882822	0.0589935	Foxp2_Foxp3	ENSMUST00000184885.1|Trps1|ENSMUSG00000038679.10|trichorhinophalangeal syndrome I (human)
mm10_v2_chr1_-_69685937_69685966	0.058595	Foxp2_Foxp3	ENSMUST00000027146.2|Ikzf2|ENSMUSG00000025997.7|IKAROS family zinc finger 2
mm10_v2_chr19_-_42086338_42086375	0.0582412	Foxp2_Foxp3	ENSMUST00000051772.8|Morn4|ENSMUSG00000049670.8|MORN repeat containing 4
mm10_v2_chr6_-_29609811_29609887	0.0582113	Foxp2_Foxp3	ENSMUST00000012679.8|Tnpo3|ENSMUSG00000012535.8|transportin 3
mm10_v2_chr8_+_45628176_45628219	0.0561604	Foxp2_Foxp3	ENSMUST00000130850.1|Sorbs2|ENSMUSG00000031626.10|sorbin and SH3 domain containing 2
mm10_v2_chr7_-_29505447_29505473	0.055706	Foxp2_Foxp3	ENSMUST00000183096.1|Sipa1l3|ENSMUSG00000030583.10|signal-induced proliferation-associated 1 like 3 	ENSMUST00000085809.4|Sipa1l3|ENSMUSG00000030583.10|signal-induced proliferation-associated 1 like 3
mm10_v2_chr9_+_74848437_74848531	0.0548266	Foxp2_Foxp3	ENSMUST00000161862.1|Gm16551|ENSMUSG00000066477.7|predicted gene 16551 	ENSMUST00000160950.1|Gm20649|ENSMUSG00000093662.1|predicted gene 20649 	ENSMUST00000162089.1|Gm16551|ENSMUSG00000066477.7|predicted gene 16551 	ENSMUST00000160017.1|Gm16551|ENSMUSG00000066477.7|predicted gene 16551
mm10_v2_chr11_+_85311232_85311286	0.0547401	Foxp2_Foxp3	ENSMUST00000020835.9|Ppm1d|ENSMUSG00000020525.11|protein phosphatase 1D magnesium-dependent, delta isoform
mm10_v2_chr19_-_45783512_45783558	0.0542863	Foxp2_Foxp3	ENSMUST00000026243.3|Mgea5|ENSMUSG00000025220.7|meningioma expressed antigen 5 (hyaluronidase)
mm10_v2_chr10_+_93488766_93488774	0.0536549	Foxp2_Foxp3	ENSMUST00000129421.1|Hal|ENSMUSG00000020017.8|histidine ammonia lyase
mm10_v2_chr4_-_110292719_110292732	0.0533885	Foxp2_Foxp3	ENSMUST00000106601.1|Elavl4|ENSMUSG00000028546.11|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)
mm10_v2_chr11_+_75531690_75531743	0.0530672	Foxp2_Foxp3	ENSMUST00000149727.1|Slc43a2|ENSMUSG00000038178.10|solute carrier family 43, member 2 	ENSMUST00000042561.7|Slc43a2|ENSMUSG00000038178.10|solute carrier family 43, member 2 	ENSMUST00000108433.1|Slc43a2|ENSMUSG00000038178.10|solute carrier family 43, member 2 	ENSMUST00000143035.1|Slc43a2|ENSMUSG00000038178.10|solute carrier family 43, member 2
mm10_v2_chr6_-_29609607_29609642	0.0523679	Foxp2_Foxp3	ENSMUST00000115251.1|Tnpo3|ENSMUSG00000012535.8|transportin 3
mm10_v2_chr11_-_52282564_52282579	0.0521077	Foxp2_Foxp3	ENSMUST00000086844.3|Tcf7|ENSMUSG00000000782.9|transcription factor 7, T cell specific
mm10_v2_chr11_-_106788486_106788532	0.0504406	Foxp2_Foxp3	ENSMUST00000021062.5|Ddx5|ENSMUSG00000020719.8|DEAD (Asp-Glu-Ala-Asp) box polypeptide 5
mm10_v2_chr12_-_31499541_31499616	0.0483315	Foxp2_Foxp3	ENSMUST00000101499.3|Cbll1|ENSMUSG00000020659.9|Casitas B-lineage lymphoma-like 1 	ENSMUST00000064240.6|Cbll1|ENSMUSG00000020659.9|Casitas B-lineage lymphoma-like 1 	ENSMUST00000085487.5|Cbll1|ENSMUSG00000020659.9|Casitas B-lineage lymphoma-like 1
mm10_v2_chr2_+_18055203_18055237	0.047857	Foxp2_Foxp3	ENSMUST00000028076.8|Mllt10|ENSMUSG00000026743.10|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10
mm10_v2_chr16_+_19028232_19028232	0.0469848	Foxp2_Foxp3	ENSMUST00000074116.4|Gm10088|ENSMUSG00000060811.4|predicted gene 10088
mm10_v2_chr1_+_156838915_156838978	0.0469018	Foxp2_Foxp3	ENSMUST00000111720.1|Angptl1|ENSMUSG00000033544.6|angiopoietin-like 1
mm10_v2_chr7_+_81862674_81862692	0.0467239	Foxp2_Foxp3	ENSMUST00000119543.1|Tm6sf1|ENSMUSG00000038623.3|transmembrane 6 superfamily member 1
mm10_v2_chr2_+_31974427_31974448	0.0464612	Foxp2_Foxp3	ENSMUST00000065398.6|Nup214|ENSMUSG00000001855.9|nucleoporin 214
mm10_v2_chr14_-_62456286_62456289	0.0449177	Foxp2_Foxp3	ENSMUST00000165651.1|Gucy1b2|ENSMUSG00000021933.5|guanylate cyclase 1, soluble, beta 2 	ENSMUST00000022501.3|Gucy1b2|ENSMUSG00000021933.5|guanylate cyclase 1, soluble, beta 2
mm10_v2_chr1_+_52119438_52119499	0.0422736	Foxp2_Foxp3	ENSMUST00000070968.7|Stat1|ENSMUSG00000026104.8|signal transducer and activator of transcription 1
mm10_v2_chr6_-_87809757_87809787	0.0421701	Foxp2_Foxp3	ENSMUST00000032134.7|Rab43|ENSMUSG00000030055.10|RAB43, member RAS oncogene family
mm10_v2_chr19_+_8741669_8741811	0.0408498	Foxp2_Foxp3	ENSMUST00000176314.1|Stx5a|ENSMUSG00000010110.11|syntaxin 5A 	ENSMUST00000073430.7|Stx5a|ENSMUSG00000010110.11|syntaxin 5A 	ENSMUST00000175901.1|Stx5a|ENSMUSG00000010110.11|syntaxin 5A
mm10_v2_chr10_-_117710745_117710773	0.0396834	Foxp2_Foxp3	ENSMUST00000020408.8|Mdm2|ENSMUSG00000020184.8|transformed mouse 3T3 cell double minute 2 	ENSMUST00000105263.1|Mdm2|ENSMUSG00000020184.8|transformed mouse 3T3 cell double minute 2
mm10_v2_chr14_+_55560480_55560533	0.0388987	Foxp2_Foxp3	ENSMUST00000121622.1|Dcaf11|ENSMUSG00000022214.8|DDB1 and CUL4 associated factor 11 	ENSMUST00000143431.1|Dcaf11|ENSMUSG00000022214.8|DDB1 and CUL4 associated factor 11 	ENSMUST00000150481.1|Dcaf11|ENSMUSG00000022214.8|DDB1 and CUL4 associated factor 11
mm10_v2_chr5_-_5420244_5420312	0.0372543	Foxp2_Foxp3	ENSMUST00000167567.1|Cdk14|ENSMUSG00000028926.9|cyclin-dependent kinase 14
mm10_v2_chr6_-_97205549_97205642	0.0362729	Foxp2_Foxp3	ENSMUST00000164744.1|Uba3|ENSMUSG00000030061.10|ubiquitin-like modifier activating enzyme 3 	ENSMUST00000089287.5|Uba3|ENSMUSG00000030061.10|ubiquitin-like modifier activating enzyme 3
mm10_v2_chr19_-_43674844_43674909	0.0360585	Foxp2_Foxp3	ENSMUST00000046038.7|Slc25a28|ENSMUSG00000040414.7|solute carrier family 25, member 28
mm10_v2_chr8_+_45627709_45627803	0.0351665	Foxp2_Foxp3	ENSMUST00000134321.1|Sorbs2|ENSMUSG00000031626.10|sorbin and SH3 domain containing 2 	ENSMUST00000135336.1|Sorbs2|ENSMUSG00000031626.10|sorbin and SH3 domain containing 2
mm10_v2_chr7_-_29906087_29906137	0.03504	Foxp2_Foxp3	ENSMUST00000053521.8|Zfp27|ENSMUSG00000062040.8|zinc finger protein 27
mm10_v2_chr5_-_138170992_138171033	0.0341383	Foxp2_Foxp3	ENSMUST00000139983.1|Mcm7|ENSMUSG00000029730.10|minichromosome maintenance deficient 7 (S. cerevisiae)
mm10_v2_chr16_+_13358375_13358439	0.0335032	Foxp2_Foxp3	ENSMUST00000149359.1|Mkl2|ENSMUSG00000009569.8|MKL/myocardin-like 2
mm10_v2_chr14_+_55560904_55560974	0.0325845	Foxp2_Foxp3	ENSMUST00000072530.4|Dcaf11|ENSMUSG00000022214.8|DDB1 and CUL4 associated factor 11 	ENSMUST00000128490.1|Dcaf11|ENSMUSG00000022214.8|DDB1 and CUL4 associated factor 11
mm10_v2_chr15_-_54919961_54920037	0.0325509	Foxp2_Foxp3	ENSMUST00000167541.2|Enpp2|ENSMUSG00000022425.9|ectonucleotide pyrophosphatase/phosphodiesterase 2 	ENSMUST00000041591.9|Enpp2|ENSMUSG00000022425.9|ectonucleotide pyrophosphatase/phosphodiesterase 2 	ENSMUST00000173516.1|Enpp2|ENSMUSG00000022425.9|ectonucleotide pyrophosphatase/phosphodiesterase 2
mm10_v2_chr17_+_40811089_40811133	0.032526	Foxp2_Foxp3	ENSMUST00000024721.7|Rhag|ENSMUSG00000023926.7|Rhesus blood group-associated A glycoprotein
mm10_v2_chr14_-_70766598_70766644	0.0321161	Foxp2_Foxp3	ENSMUST00000167242.1|Xpo7|ENSMUSG00000022100.7|exportin 7 	ENSMUST00000022696.6|Xpo7|ENSMUSG00000022100.7|exportin 7
mm10_v2_chr19_+_53329413_53329478	0.0304351	Foxp2_Foxp3	ENSMUST00000025998.7|Mxi1|ENSMUSG00000025025.7|Max interacting protein 1
mm10_v2_chr6_+_115853470_115853598	0.0293466	Foxp2_Foxp3	ENSMUST00000112925.1|Ift122|ENSMUSG00000030323.7|intraflagellar transport 122 	ENSMUST00000112923.1|Ift122|ENSMUSG00000030323.7|intraflagellar transport 122 	ENSMUST00000038234.6|Ift122|ENSMUSG00000030323.7|intraflagellar transport 122
mm10_v2_chr15_+_79347534_79347556	0.0288132	Foxp2_Foxp3	ENSMUST00000096350.3|Maff|ENSMUSG00000042622.7|v-maf musculoaponeurotic fibrosarcoma oncogene family, protein F (avian)
mm10_v2_chr2_+_164833841_164833858	0.0286581	Foxp2_Foxp3	ENSMUST00000152721.1|Ctsa|ENSMUSG00000017760.9|cathepsin A
mm10_v2_chr6_+_15185456_15185563	0.0286408	Foxp2_Foxp3	ENSMUST00000115472.1|Foxp2|ENSMUSG00000029563.10|forkhead box P2 	ENSMUST00000115474.1|Foxp2|ENSMUSG00000029563.10|forkhead box P2 	ENSMUST00000031545.7|Foxp2|ENSMUSG00000029563.10|forkhead box P2 	ENSMUST00000137628.1|Foxp2|ENSMUSG00000029563.10|forkhead box P2
mm10_v2_chr9_+_50494516_50494533	0.0272701	Foxp2_Foxp3	ENSMUST00000114474.1|1600029D21Rik|ENSMUSG00000032068.8|RIKEN cDNA 1600029D21 gene
mm10_v2_chr15_+_23036449_23036492	0.0271149	Foxp2_Foxp3	ENSMUST00000164787.1|Cdh18|ENSMUSG00000040420.8|cadherin 18
mm10_v2_chr6_-_137571007_137571032	0.0265514	Foxp2_Foxp3	ENSMUST00000100841.2|Eps8|ENSMUSG00000015766.8|epidermal growth factor receptor pathway substrate 8
mm10_v2_chr12_+_55155104_55155104	0.0264678	Foxp2_Foxp3	ENSMUST00000110708.2|Srp54b|ENSMUSG00000079108.4|signal recognition particle 54B
mm10_v2_chr2_+_167538192_167538210	0.0264611	Foxp2_Foxp3	ENSMUST00000052631.7|Snai1|ENSMUSG00000042821.7|snail homolog 1 (Drosophila)
mm10_v2_chr8_+_31111816_31111891	0.0262127	Foxp2_Foxp3	ENSMUST00000046941.7|Rnf122|ENSMUSG00000039328.9|ring finger protein 122
mm10_v2_chr15_+_102144362_102144486	0.0257833	Foxp2_Foxp3	ENSMUST00000023807.6|Igfbp6|ENSMUSG00000023046.6|insulin-like growth factor binding protein 6
mm10_v2_chr3_-_30793549_30793595	0.0250249	Foxp2_Foxp3	ENSMUST00000180833.1|4933429H19Rik|ENSMUSG00000097786.1|RIKEN cDNA 4933429H19 gene
mm10_v2_chr18_+_52465676_52465710	0.0241433	Foxp2_Foxp3	ENSMUST00000025406.7|Srfbp1|ENSMUSG00000024528.7|serum response factor binding protein 1
mm10_v2_chr11_+_82781108_82781224	0.0240859	Foxp2_Foxp3	ENSMUST00000092849.5|Lig3|ENSMUSG00000020697.10|ligase III, DNA, ATP-dependent 	ENSMUST00000021039.5|Lig3|ENSMUSG00000020697.10|ligase III, DNA, ATP-dependent 	ENSMUST00000080461.5|Lig3|ENSMUSG00000020697.10|ligase III, DNA, ATP-dependent 	ENSMUST00000173347.1|Lig3|ENSMUSG00000020697.10|ligase III, DNA, ATP-dependent 	ENSMUST00000173727.1|Lig3|ENSMUSG00000020697.10|ligase III, DNA, ATP-dependent 	ENSMUST00000173009.1|Lig3|ENSMUSG00000020697.10|ligase III, DNA, ATP-dependent 	ENSMUST00000131537.2|Lig3|ENSMUSG00000020697.10|ligase III, DNA, ATP-dependent 	ENSMUST00000173722.1|Lig3|ENSMUSG00000020697.10|ligase III, DNA, ATP-dependent
mm10_v2_chr4_+_11579647_11579674	0.0240359	Foxp2_Foxp3	ENSMUST00000180239.1|Fsbp|ENSMUSG00000094595.1|fibrinogen silencer binding protein
mm10_v2_chr2_-_15049254_15049339	0.0239274	Foxp2_Foxp3	ENSMUST00000028034.8|Nsun6|ENSMUSG00000026707.9|NOL1/NOP2/Sun domain family member 6 	ENSMUST00000114713.1|Nsun6|ENSMUSG00000026707.9|NOL1/NOP2/Sun domain family member 6
mm10_v2_chr1_-_175688353_175688353	0.0235449	Foxp2_Foxp3	ENSMUST00000104984.1|Chml|ENSMUSG00000078185.1|choroideremia-like
mm10_v2_chr4_-_148500449_148500466	0.0235152	Foxp2_Foxp3	ENSMUST00000030840.3|Angptl7|ENSMUSG00000028989.3|angiopoietin-like 7
mm10_v2_chr15_-_100669496_100669511	0.023266	Foxp2_Foxp3	ENSMUST00000182814.1|Bin2|ENSMUSG00000098112.1|bridging integrator 2 	ENSMUST00000182068.1|Bin2|ENSMUSG00000098112.1|bridging integrator 2
mm10_v2_chrX_-_140543177_140543195	0.0227916	Foxp2_Foxp3	ENSMUST00000055738.5|Tsc22d3|ENSMUSG00000031431.7|TSC22 domain family, member 3
mm10_v2_chr1_+_12718496_12718545	0.02244	Foxp2_Foxp3	ENSMUST00000088585.3|Sulf1|ENSMUSG00000016918.9|sulfatase 1
mm10_v2_chr19_-_10880370_10880411	0.0213892	Foxp2_Foxp3	ENSMUST00000133303.1|Tmem109|ENSMUSG00000034659.8|transmembrane protein 109
mm10_v2_chr2_+_166792525_166792536	0.0213051	Foxp2_Foxp3	ENSMUST00000065753.1|Trp53rk|ENSMUSG00000042854.9|transformation related protein 53 regulating kinase
mm10_v2_chr11_-_107470699_107470726	0.0207249	Foxp2_Foxp3	ENSMUST00000103064.3|Pitpnc1|ENSMUSG00000040430.12|phosphatidylinositol transfer protein, cytoplasmic 1
mm10_v2_chr1_+_177444653_177444669	0.0204623	Foxp2_Foxp3	ENSMUST00000094276.3|Zbtb18|ENSMUSG00000063659.6|zinc finger and BTB domain containing 18
mm10_v2_chr3_+_31902666_31902703	0.0198415	Foxp2_Foxp3	ENSMUST00000119970.1|Kcnmb2|ENSMUSG00000037610.9|potassium large conductance calcium-activated channel, subfamily M, beta member 2 	ENSMUST00000178668.1|Kcnmb2|ENSMUSG00000037610.9|potassium large conductance calcium-activated channel, subfamily M, beta member 2
mm10_v2_chr6_+_29859374_29859381	0.018597	Foxp2_Foxp3	ENSMUST00000115238.3|Ahcyl2|ENSMUSG00000029772.11|S-adenosylhomocysteine hydrolase-like 2
mm10_v2_chr6_+_14901440_14901497	0.0184755	Foxp2_Foxp3	ENSMUST00000128567.1|Foxp2|ENSMUSG00000029563.10|forkhead box P2
mm10_v2_chr10_-_20725023_20725078	0.0180871	Foxp2_Foxp3	ENSMUST00000020165.7|Pde7b|ENSMUSG00000019990.8|phosphodiesterase 7B
mm10_v2_chr10_+_126978690_126978749	0.0180866	Foxp2_Foxp3	ENSMUST00000105256.2|Ctdsp2|ENSMUSG00000078429.2|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2
mm10_v2_chr16_-_63864114_63864182	0.0179478	Foxp2_Foxp3	ENSMUST00000064405.6|Epha3|ENSMUSG00000052504.6|Eph receptor A3
mm10_v2_chr6_-_70792155_70792232	0.0172682	Foxp2_Foxp3	ENSMUST00000066134.5|Rpia|ENSMUSG00000053604.5|ribose 5-phosphate isomerase A
mm10_v2_chr10_-_117292863_117292870	0.0172497	Foxp2_Foxp3	ENSMUST00000092162.5|Lyz1|ENSMUSG00000069515.5|lysozyme 1
mm10_v2_chr10_+_62920630_62920646	0.0166234	Foxp2_Foxp3	ENSMUST00000044977.3|Slc25a16|ENSMUSG00000071253.2|solute carrier family 25 (mitochondrial carrier, Graves disease autoantigen), member 16
mm10_v2_chr6_+_21985903_21985972	0.0164247	Foxp2_Foxp3	ENSMUST00000137437.1|Cped1|ENSMUSG00000062980.9|cadherin-like and PC-esterase domain containing 1 	ENSMUST00000115383.2|Cped1|ENSMUSG00000062980.9|cadherin-like and PC-esterase domain containing 1
mm10_v2_chr19_-_58455903_58455914	0.0159155	Foxp2_Foxp3	ENSMUST00000131877.1|Gfra1|ENSMUSG00000025089.9|glial cell line derived neurotrophic factor family receptor alpha 1
mm10_v2_chr3_+_118430299_118430368	0.0152059	Foxp2_Foxp3	ENSMUST00000180774.1|Gm26871|ENSMUSG00000097311.1|predicted gene, 26871
mm10_v2_chr4_-_154160632_154160696	0.0151622	Foxp2_Foxp3	ENSMUST00000105639.3|Tprgl|ENSMUSG00000029030.8|transformation related protein 63 regulated like 	ENSMUST00000030896.8|Tprgl|ENSMUSG00000029030.8|transformation related protein 63 regulated like
mm10_v2_chr19_-_36736653_36736670	0.0150628	Foxp2_Foxp3	ENSMUST00000087321.2|Ppp1r3c|ENSMUSG00000067279.2|protein phosphatase 1, regulatory (inhibitor) subunit 3C
mm10_v2_chr5_+_65131184_65131231	0.0148197	Foxp2_Foxp3	ENSMUST00000031089.5|Klhl5|ENSMUSG00000054920.6|kelch-like 5 	ENSMUST00000101191.3|Klhl5|ENSMUSG00000054920.6|kelch-like 5
mm10_v2_chr2_-_73892588_73892616	0.0137418	Foxp2_Foxp3	ENSMUST00000154456.1|Atf2|ENSMUSG00000027104.12|activating transcription factor 2 	ENSMUST00000090802.4|Atf2|ENSMUSG00000027104.12|activating transcription factor 2 	ENSMUST00000055833.5|Atf2|ENSMUSG00000027104.12|activating transcription factor 2
mm10_v2_chr4_-_133339283_133339334	0.0131963	Foxp2_Foxp3	ENSMUST00000043305.7|Wdtc1|ENSMUSG00000037622.8|WD and tetratricopeptide repeats 1
mm10_v2_chr18_-_80708115_80708180	0.0123137	Foxp2_Foxp3	ENSMUST00000167977.1|Nfatc1|ENSMUSG00000033016.9|nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1 	ENSMUST00000035800.7|Nfatc1|ENSMUSG00000033016.9|nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1
mm10_v2_chr16_-_57754707_57754737	0.0119576	Foxp2_Foxp3	ENSMUST00000089332.4|Col8a1|ENSMUSG00000068196.4|collagen, type VIII, alpha 1
mm10_v2_chr10_+_23894688_23894688	0.010096	Foxp2_Foxp3	ENSMUST00000041416.7|Vnn1|ENSMUSG00000037440.7|vanin 1
mm10_v2_chr10_+_80805233_80805249	0.0100472	Foxp2_Foxp3	ENSMUST00000036016.4|Amh|ENSMUSG00000035262.4|anti-Mullerian hormone
mm10_v2_chr11_+_85353156_85353219	0.00965995	Foxp2_Foxp3	ENSMUST00000108061.1|Bcas3|ENSMUSG00000059439.9|breast carcinoma amplified sequence 3 	ENSMUST00000108062.1|Bcas3|ENSMUSG00000059439.9|breast carcinoma amplified sequence 3 	ENSMUST00000108056.1|Bcas3|ENSMUSG00000059439.9|breast carcinoma amplified sequence 3 	ENSMUST00000138423.1|Bcas3|ENSMUSG00000059439.9|breast carcinoma amplified sequence 3 	ENSMUST00000074875.4|Bcas3|ENSMUSG00000059439.9|breast carcinoma amplified sequence 3 	ENSMUST00000092821.3|Bcas3|ENSMUSG00000059439.9|breast carcinoma amplified sequence 3
mm10_v2_chr11_-_120990871_120991037	0.00914542	Foxp2_Foxp3	ENSMUST00000154483.1|Csnk1d|ENSMUSG00000025162.11|casein kinase 1, delta
mm10_v2_chr19_-_46962301_46962351	0.00814741	Foxp2_Foxp3	ENSMUST00000168536.1|Nt5c2|ENSMUSG00000025041.10|5'-nucleotidase, cytosolic II
mm10_v2_chr9_+_13765970_13766043	0.00721391	Foxp2_Foxp3	ENSMUST00000152532.1|Mtmr2|ENSMUSG00000031918.10|myotubularin related protein 2
mm10_v2_chr16_+_49699198_49699304	0.00711963	Foxp2_Foxp3	ENSMUST00000046777.4|Ift57|ENSMUSG00000032965.4|intraflagellar transport 57 	ENSMUST00000142682.1|Ift57|ENSMUSG00000032965.4|intraflagellar transport 57
mm10_v2_chr9_-_44713196_44713265	0.00534602	Foxp2_Foxp3	ENSMUST00000144251.1|Phldb1|ENSMUSG00000048537.9|pleckstrin homology-like domain, family B, member 1 	ENSMUST00000156918.1|Phldb1|ENSMUSG00000048537.9|pleckstrin homology-like domain, family B, member 1
mm10_v2_chr13_+_60602182_60602231	0.00502696	Foxp2_Foxp3	ENSMUST00000044083.7|Dapk1|ENSMUSG00000021559.7|death associated protein kinase 1
mm10_v2_chr11_+_70214105_70214132	0.00457566	Foxp2_Foxp3	ENSMUST00000094055.3|Slc16a11|ENSMUSG00000040938.10|solute carrier family 16 (monocarboxylic acid transporters), member 11 	ENSMUST00000136328.1|Slc16a11|ENSMUSG00000040938.10|solute carrier family 16 (monocarboxylic acid transporters), member 11 	ENSMUST00000126296.1|Slc16a11|ENSMUSG00000040938.10|solute carrier family 16 (monocarboxylic acid transporters), member 11 	ENSMUST00000153993.2|Slc16a11|ENSMUSG00000040938.10|solute carrier family 16 (monocarboxylic acid transporters), member 11
mm10_v2_chr14_+_55561060_55561071	0.00350259	Foxp2_Foxp3	ENSMUST00000117701.1|Dcaf11|ENSMUSG00000022214.8|DDB1 and CUL4 associated factor 11
mm10_v2_chr15_-_100669512_100669529	0.00283774	Foxp2_Foxp3	ENSMUST00000182574.1|Bin2|ENSMUSG00000098112.1|bridging integrator 2 	ENSMUST00000182775.1|Bin2|ENSMUSG00000098112.1|bridging integrator 2
mm10_v2_chr11_+_3289880_3289993	0.00240792	Foxp2_Foxp3	ENSMUST00000110043.1|Patz1|ENSMUSG00000020453.11|POZ (BTB) and AT hook containing zinc finger 1 	ENSMUST00000094471.3|Patz1|ENSMUSG00000020453.11|POZ (BTB) and AT hook containing zinc finger 1
mm10_v2_chr4_-_133339238_133339271	0.0022991	Foxp2_Foxp3	ENSMUST00000105906.1|Wdtc1|ENSMUSG00000037622.8|WD and tetratricopeptide repeats 1
mm10_v2_chrX_-_150814265_150814345	0.00205263	Foxp2_Foxp3	ENSMUST00000026302.6|Maged2|ENSMUSG00000025268.9|melanoma antigen, family D, 2 	ENSMUST00000129768.1|Maged2|ENSMUSG00000025268.9|melanoma antigen, family D, 2 	ENSMUST00000112699.2|Maged2|ENSMUSG00000025268.9|melanoma antigen, family D, 2
mm10_v2_chr10_-_128696257_128696273	0.00175717	Foxp2_Foxp3	ENSMUST00000000727.2|Rab5b|ENSMUSG00000000711.2|RAB5B, member RAS oncogene family
