mm10_v2_chr16_+_91269759_91269778	2.36251	Gli3_Zic1	ENSMUST00000056882.5|Olig1|ENSMUSG00000046160.5|oligodendrocyte transcription factor 1
mm10_v2_chr9_-_54661870_54661912	2.01676	Gli3_Zic1	ENSMUST00000034822.5|Acsbg1|ENSMUSG00000032281.5|acyl-CoA synthetase bubblegum family member 1
mm10_v2_chr10_-_127341583_127341614	1.95703	Gli3_Zic1	ENSMUST00000026474.3|Gli1|ENSMUSG00000025407.6|GLI-Kruppel family member GLI1
mm10_v2_chr6_-_101377342_101377388	1.92373	Gli3_Zic1	ENSMUST00000151175.1|Pdzrn3|ENSMUSG00000035357.10|PDZ domain containing RING finger 3
mm10_v2_chr1_+_195017399_195017431	1.84046	Gli3_Zic1	ENSMUST00000181273.1|A330023F24Rik|ENSMUSG00000096929.1|RIKEN cDNA A330023F24 gene
mm10_v2_chr8_-_105966038_105966120	1.84004	Gli3_Zic1	ENSMUST00000116429.2|Slc12a4|ENSMUSG00000017765.10|solute carrier family 12, member 4 	ENSMUST00000034370.9|Slc12a4|ENSMUSG00000017765.10|solute carrier family 12, member 4
mm10_v2_chr6_-_101377897_101378016	1.80263	Gli3_Zic1	ENSMUST00000075994.6|Pdzrn3|ENSMUSG00000035357.10|PDZ domain containing RING finger 3
mm10_v2_chrX_-_167382747_167382760	1.69924	Gli3_Zic1	ENSMUST00000026839.4|Prps2|ENSMUSG00000025742.5|phosphoribosyl pyrophosphate synthetase 2
mm10_v2_chr7_-_142657466_142657496	1.56903	Gli3_Zic1	ENSMUST00000097936.2|Igf2|ENSMUSG00000048583.10|insulin-like growth factor 2 	ENSMUST00000000033.5|Igf2|ENSMUSG00000048583.10|insulin-like growth factor 2
mm10_v2_chr9_-_54661666_54661716	1.55876	Gli3_Zic1	ENSMUST00000128624.1|Acsbg1|ENSMUSG00000032281.5|acyl-CoA synthetase bubblegum family member 1
mm10_v2_chr6_+_17463749_17463809	1.40728	Gli3_Zic1	ENSMUST00000115443.1|Met|ENSMUSG00000009376.9|met proto-oncogene
mm10_v2_chr14_-_55560340_55560406	1.37943	Gli3_Zic1	ENSMUST00000066106.3|A730061H03Rik|ENSMUSG00000053588.3|RIKEN cDNA A730061H03 gene
mm10_v2_chr7_+_5056706_5056741	1.33068	Gli3_Zic1	ENSMUST00000144802.1|Ccdc106|ENSMUSG00000035228.8|coiled-coil domain containing 106
mm10_v2_chrX_-_16911774_16911774	1.31015	Gli3_Zic1	ENSMUST00000040134.7|Ndp|ENSMUSG00000040138.7|Norrie disease (pseudoglioma) (human)
mm10_v2_chr2_-_155945282_155945367	1.28465	Gli3_Zic1	ENSMUST00000040162.2|Gdf5|ENSMUSG00000038259.4|growth differentiation factor 5
mm10_v2_chr4_+_144893077_144893103	1.25224	Gli3_Zic1	ENSMUST00000154208.1|Dhrs3|ENSMUSG00000066026.8|dehydrogenase/reductase (SDR family) member 3
mm10_v2_chr2_-_36104060_36104073	1.23243	Gli3_Zic1	ENSMUST00000112961.3|Lhx6|ENSMUSG00000026890.13|LIM homeobox protein 6 	ENSMUST00000112966.3|Lhx6|ENSMUSG00000026890.13|LIM homeobox protein 6
mm10_v2_chr7_+_35119285_35119301	1.23192	Gli3_Zic1	ENSMUST00000042985.9|Cebpa|ENSMUSG00000034957.9|CCAAT/enhancer binding protein (C/EBP), alpha
mm10_v2_chr2_+_70562007_70562042	1.21545	Gli3_Zic1	ENSMUST00000094934.4|Gad1|ENSMUSG00000070880.4|glutamate decarboxylase 1
mm10_v2_chr6_+_125494419_125494454	1.2136	Gli3_Zic1	ENSMUST00000181266.1|Gm26728|ENSMUSG00000097114.1|predicted gene, 26728
mm10_v2_chr4_-_136956784_136956871	1.18462	Gli3_Zic1	ENSMUST00000030420.8|Epha8|ENSMUSG00000028661.8|Eph receptor A8
mm10_v2_chr7_+_5056856_5056916	1.12746	Gli3_Zic1	ENSMUST00000131368.1|Ccdc106|ENSMUSG00000035228.8|coiled-coil domain containing 106 	ENSMUST00000123956.1|Ccdc106|ENSMUSG00000035228.8|coiled-coil domain containing 106
mm10_v2_chr8_-_105637403_105637497	1.08133	Gli3_Zic1	ENSMUST00000182046.1|Gm5914|ENSMUSG00000098120.1|predicted gene 5914
mm10_v2_chr7_-_19698383_19698407	1.07118	Gli3_Zic1	ENSMUST00000173739.1|Apoe|ENSMUSG00000002985.9|apolipoprotein E
mm10_v2_chr9_+_62858085_62858138	1.06627	Gli3_Zic1	ENSMUST00000034777.6|Calml4|ENSMUSG00000032246.7|calmodulin-like 4 	ENSMUST00000163820.1|Calml4|ENSMUSG00000032246.7|calmodulin-like 4
mm10_v2_chrX_-_7574120_7574312	0.977935	Gli3_Zic1	ENSMUST00000045924.7|Ppp1r3f|ENSMUSG00000039556.10|protein phosphatase 1, regulatory (inhibitor) subunit 3F 	ENSMUST00000115742.2|Ppp1r3f|ENSMUSG00000039556.10|protein phosphatase 1, regulatory (inhibitor) subunit 3F 	ENSMUST00000150787.1|Ppp1r3f|ENSMUSG00000039556.10|protein phosphatase 1, regulatory (inhibitor) subunit 3F
mm10_v2_chr7_-_142372210_142372292	0.969572	Gli3_Zic1	ENSMUST00000084412.5|Ifitm10|ENSMUSG00000045777.8|interferon induced transmembrane protein 10
mm10_v2_chr3_+_31149934_31149958	0.9606	Gli3_Zic1	ENSMUST00000046174.6|Cldn11|ENSMUSG00000037625.6|claudin 11
mm10_v2_chr6_-_125494754_125494791	0.957319	Gli3_Zic1	ENSMUST00000032492.8|Cd9|ENSMUSG00000030342.8|CD9 antigen
mm10_v2_chr8_+_70501116_70501172	0.949417	Gli3_Zic1	ENSMUST00000127983.1|Crlf1|ENSMUSG00000007888.9|cytokine receptor-like factor 1
mm10_v2_chr9_+_50752758_50752894	0.9333	Gli3_Zic1	ENSMUST00000034562.7|Cryab|ENSMUSG00000032060.9|crystallin, alpha B
mm10_v2_chr15_+_103503261_103503298	0.922029	Gli3_Zic1	ENSMUST00000023132.3|Pde1b|ENSMUSG00000022489.5|phosphodiesterase 1B, Ca2+-calmodulin dependent
mm10_v2_chr16_+_43503607_43503642	0.914878	Gli3_Zic1	ENSMUST00000126100.1|Zbtb20|ENSMUSG00000022708.10|zinc finger and BTB domain containing 20 	ENSMUST00000123047.1|Zbtb20|ENSMUSG00000022708.10|zinc finger and BTB domain containing 20 	ENSMUST00000156981.1|Zbtb20|ENSMUSG00000022708.10|zinc finger and BTB domain containing 20
mm10_v2_chr19_+_5740885_5740904	0.887381	Gli3_Zic1	ENSMUST00000081496.5|Ltbp3|ENSMUSG00000024940.10|latent transforming growth factor beta binding protein 3
mm10_v2_chr17_-_24650270_24650311	0.87524	Gli3_Zic1	ENSMUST00000002572.4|Slc9a3r2|ENSMUSG00000002504.8|solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2
mm10_v2_chr11_+_115154139_115154194	0.843226	Gli3_Zic1	ENSMUST00000021076.5|Rab37|ENSMUSG00000020732.7|RAB37, member of RAS oncogene family
mm10_v2_chr5_+_3343893_3343945	0.840735	Gli3_Zic1	ENSMUST00000165117.1|Cdk6|ENSMUSG00000040274.5|cyclin-dependent kinase 6
mm10_v2_chr9_-_123678873_123678885	0.838909	Gli3_Zic1	ENSMUST00000040960.6|Slc6a20a|ENSMUSG00000036814.6|solute carrier family 6 (neurotransmitter transporter), member 20A
mm10_v2_chr11_+_101246960_101247093	0.819529	Gli3_Zic1	ENSMUST00000107282.3|Ramp2|ENSMUSG00000001240.7|receptor (calcitonin) activity modifying protein 2
mm10_v2_chr8_-_105637350_105637392	0.803136	Gli3_Zic1	ENSMUST00000182863.1|Gm5914|ENSMUSG00000098120.1|predicted gene 5914
mm10_v2_chr7_+_5057161_5057197	0.801174	Gli3_Zic1	ENSMUST00000045543.5|Ccdc106|ENSMUSG00000035228.8|coiled-coil domain containing 106
mm10_v2_chr11_+_101246405_101246567	0.795156	Gli3_Zic1	ENSMUST00000122006.1|Ramp2|ENSMUSG00000001240.7|receptor (calcitonin) activity modifying protein 2 	ENSMUST00000151830.1|Ramp2|ENSMUSG00000001240.7|receptor (calcitonin) activity modifying protein 2
mm10_v2_chr11_-_42182163_42182222	0.785461	Gli3_Zic1	ENSMUST00000153147.1|Gabra1|ENSMUSG00000010803.6|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 1
mm10_v2_chr9_-_123678782_123678850	0.782915	Gli3_Zic1	ENSMUST00000170591.1|Slc6a20a|ENSMUSG00000036814.6|solute carrier family 6 (neurotransmitter transporter), member 20A 	ENSMUST00000171647.1|Slc6a20a|ENSMUSG00000036814.6|solute carrier family 6 (neurotransmitter transporter), member 20A
mm10_v2_chr15_-_99820072_99820154	0.766988	Gli3_Zic1	ENSMUST00000109024.2|Lima1|ENSMUSG00000023022.7|LIM domain and actin binding 1
mm10_v2_chr11_+_93098404_93098437	0.759694	Gli3_Zic1	ENSMUST00000107859.1|Car10|ENSMUSG00000056158.8|carbonic anhydrase 10 	ENSMUST00000042943.6|Car10|ENSMUSG00000056158.8|carbonic anhydrase 10 	ENSMUST00000107861.1|Car10|ENSMUSG00000056158.8|carbonic anhydrase 10 	ENSMUST00000107858.2|Car10|ENSMUSG00000056158.8|carbonic anhydrase 10
mm10_v2_chrX_+_140956892_140956923	0.7394	Gli3_Zic1	ENSMUST00000112971.1|Atg4a|ENSMUSG00000079418.3|autophagy related 4A, cysteine peptidase
mm10_v2_chr5_-_147725988_147726023	0.728199	Gli3_Zic1	ENSMUST00000110529.1|Flt1|ENSMUSG00000029648.7|FMS-like tyrosine kinase 1 	ENSMUST00000031652.3|Flt1|ENSMUSG00000029648.7|FMS-like tyrosine kinase 1 	ENSMUST00000031653.5|Flt1|ENSMUSG00000029648.7|FMS-like tyrosine kinase 1
mm10_v2_chr6_-_35308110_35308136	0.71517	Gli3_Zic1	ENSMUST00000031868.4|Slc13a4|ENSMUSG00000029843.4|solute carrier family 13 (sodium/sulfate symporters), member 4
mm10_v2_chr15_+_78899755_78899775	0.710335	Gli3_Zic1	ENSMUST00000001226.3|Sh3bp1|ENSMUSG00000022436.9|SH3-domain binding protein 1 	ENSMUST00000061239.7|Sh3bp1|ENSMUSG00000022436.9|SH3-domain binding protein 1 	ENSMUST00000109698.2|Sh3bp1|ENSMUSG00000022436.9|SH3-domain binding protein 1
mm10_v2_chr6_+_86195214_86195251	0.704247	Gli3_Zic1	ENSMUST00000032066.9|Tgfa|ENSMUSG00000029999.9|transforming growth factor alpha
mm10_v2_chr11_-_100939540_100939566	0.683634	Gli3_Zic1	ENSMUST00000127638.1|Stat3|ENSMUSG00000004040.10|signal transducer and activator of transcription 3
mm10_v2_chr16_-_44016387_44016436	0.682955	Gli3_Zic1	ENSMUST00000036174.3|Gramd1c|ENSMUSG00000036292.7|GRAM domain containing 1C
mm10_v2_chr16_+_20733104_20733158	0.675912	Gli3_Zic1	ENSMUST00000115423.1|Chrd|ENSMUSG00000006958.7|chordin 	ENSMUST00000007171.6|Chrd|ENSMUSG00000006958.7|chordin
mm10_v2_chr2_+_32646586_32646602	0.674571	Gli3_Zic1	ENSMUST00000009705.7|Eng|ENSMUSG00000026814.10|endoglin 	ENSMUST00000167841.1|Eng|ENSMUSG00000026814.10|endoglin
mm10_v2_chr14_+_55560480_55560533	0.665757	Gli3_Zic1	ENSMUST00000121622.1|Dcaf11|ENSMUSG00000022214.8|DDB1 and CUL4 associated factor 11 	ENSMUST00000143431.1|Dcaf11|ENSMUSG00000022214.8|DDB1 and CUL4 associated factor 11 	ENSMUST00000150481.1|Dcaf11|ENSMUSG00000022214.8|DDB1 and CUL4 associated factor 11
mm10_v2_chr7_-_118443549_118443571	0.65865	Gli3_Zic1	ENSMUST00000081574.4|Syt17|ENSMUSG00000058420.5|synaptotagmin XVII
mm10_v2_chr13_-_63431737_63431755	0.645754	Gli3_Zic1	ENSMUST00000073029.5|Fancc|ENSMUSG00000021461.10|Fanconi anemia, complementation group C
mm10_v2_chr11_-_100939357_100939456	0.638008	Gli3_Zic1	ENSMUST00000092671.5|Stat3|ENSMUSG00000004040.10|signal transducer and activator of transcription 3 	ENSMUST00000103114.1|Stat3|ENSMUSG00000004040.10|signal transducer and activator of transcription 3
mm10_v2_chr11_+_100415722_100415766	0.633624	Gli3_Zic1	ENSMUST00000107400.2|Fkbp10|ENSMUSG00000001555.4|FK506 binding protein 10
mm10_v2_chr9_-_103480328_103480348	0.616053	Gli3_Zic1	ENSMUST00000124310.2|Bfsp2|ENSMUSG00000032556.9|beaded filament structural protein 2, phakinin
mm10_v2_chr17_-_28350747_28350820	0.603849	Gli3_Zic1	ENSMUST00000080572.7|Tead3|ENSMUSG00000002249.11|TEA domain family member 3 	ENSMUST00000156862.1|Tead3|ENSMUSG00000002249.11|TEA domain family member 3
mm10_v2_chr6_-_113531575_113531667	0.598615	Gli3_Zic1	ENSMUST00000032425.5|Emc3|ENSMUSG00000030286.5|ER membrane protein complex subunit 3
mm10_v2_chr9_-_58158498_58158554	0.583543	Gli3_Zic1	ENSMUST00000168864.2|Islr|ENSMUSG00000037206.8|immunoglobulin superfamily containing leucine-rich repeat
mm10_v2_chr4_+_124657646_124657656	0.581216	Gli3_Zic1	ENSMUST00000053491.7|Pou3f1|ENSMUSG00000090125.2|POU domain, class 3, transcription factor 1
mm10_v2_chr1_+_42697146_42697146	0.576104	Gli3_Zic1	ENSMUST00000054883.2|Pou3f3|ENSMUSG00000045515.2|POU domain, class 3, transcription factor 3
mm10_v2_chr14_+_55560904_55560974	0.573852	Gli3_Zic1	ENSMUST00000072530.4|Dcaf11|ENSMUSG00000022214.8|DDB1 and CUL4 associated factor 11 	ENSMUST00000128490.1|Dcaf11|ENSMUSG00000022214.8|DDB1 and CUL4 associated factor 11
mm10_v2_chr17_-_28350600_28350681	0.567956	Gli3_Zic1	ENSMUST00000114799.1|Tead3|ENSMUSG00000002249.11|TEA domain family member 3
mm10_v2_chr7_-_100656953_100657103	0.567334	Gli3_Zic1	ENSMUST00000107046.1|Plekhb1|ENSMUSG00000030701.10|pleckstrin homology domain containing, family B (evectins) member 1 	ENSMUST00000107045.1|Plekhb1|ENSMUSG00000030701.10|pleckstrin homology domain containing, family B (evectins) member 1 	ENSMUST00000139708.1|Plekhb1|ENSMUSG00000030701.10|pleckstrin homology domain containing, family B (evectins) member 1
mm10_v2_chr2_+_49451486_49451559	0.566878	Gli3_Zic1	ENSMUST00000092123.4|Epc2|ENSMUSG00000069495.6|enhancer of polycomb homolog 2 (Drosophila)
mm10_v2_chr8_+_76902277_76902476	0.565348	Gli3_Zic1	ENSMUST00000109912.1|Nr3c2|ENSMUSG00000031618.7|nuclear receptor subfamily 3, group C, member 2 	ENSMUST00000128862.1|Nr3c2|ENSMUSG00000031618.7|nuclear receptor subfamily 3, group C, member 2 	ENSMUST00000109911.1|Nr3c2|ENSMUSG00000031618.7|nuclear receptor subfamily 3, group C, member 2
mm10_v2_chr11_-_100939457_100939484	0.552963	Gli3_Zic1	ENSMUST00000138438.1|Stat3|ENSMUSG00000004040.10|signal transducer and activator of transcription 3
mm10_v2_chr14_-_30353468_30353535	0.549532	Gli3_Zic1	ENSMUST00000112249.1|Cacna1d|ENSMUSG00000015968.10|calcium channel, voltage-dependent, L type, alpha 1D subunit
mm10_v2_chr2_-_144527341_144527424	0.542842	Gli3_Zic1	ENSMUST00000163701.1|Dzank1|ENSMUSG00000037259.9|double zinc ribbon and ankyrin repeat domains 1 	ENSMUST00000081982.5|Dzank1|ENSMUSG00000037259.9|double zinc ribbon and ankyrin repeat domains 1
mm10_v2_chr6_+_17463927_17464071	0.539443	Gli3_Zic1	ENSMUST00000115442.1|Met|ENSMUSG00000009376.9|met proto-oncogene
mm10_v2_chr6_-_115251839_115251867	0.534146	Gli3_Zic1	ENSMUST00000032462.6|Timp4|ENSMUSG00000030317.6|tissue inhibitor of metalloproteinase 4
mm10_v2_chr6_+_29694204_29694250	0.524119	Gli3_Zic1	ENSMUST00000046750.7|Tspan33|ENSMUSG00000001763.8|tetraspanin 33 	ENSMUST00000115250.3|Tspan33|ENSMUSG00000001763.8|tetraspanin 33
mm10_v2_chr2_-_29253001_29253013	0.513934	Gli3_Zic1	ENSMUST00000071201.4|Ntng2|ENSMUSG00000035513.13|netrin G2
mm10_v2_chr18_+_52767994_52768149	0.513186	Gli3_Zic1	ENSMUST00000025413.7|Sncaip|ENSMUSG00000024534.9|synuclein, alpha interacting protein (synphilin) 	ENSMUST00000163742.2|Sncaip|ENSMUSG00000024534.9|synuclein, alpha interacting protein (synphilin) 	ENSMUST00000178011.1|Sncaip|ENSMUSG00000024534.9|synuclein, alpha interacting protein (synphilin)
mm10_v2_chr19_-_32388462_32388512	0.508124	Gli3_Zic1	ENSMUST00000099514.3|Sgms1|ENSMUSG00000040451.11|sphingomyelin synthase 1
mm10_v2_chr1_+_135729147_135729234	0.499518	Gli3_Zic1	ENSMUST00000027677.7|Csrp1|ENSMUSG00000026421.8|cysteine and glycine-rich protein 1
mm10_v2_chr5_-_37824580_37824584	0.497963	Gli3_Zic1	ENSMUST00000063116.9|Msx1|ENSMUSG00000048450.10|msh homeobox 1
mm10_v2_chr4_-_148130678_148130706	0.4938	Gli3_Zic1	ENSMUST00000030862.4|Draxin|ENSMUSG00000029005.4|dorsal inhibitory axon guidance protein
mm10_v2_chr17_-_68004075_68004140	0.486851	Gli3_Zic1	ENSMUST00000024840.5|Arhgap28|ENSMUSG00000024043.7|Rho GTPase activating protein 28
mm10_v2_chr9_+_77917364_77917386	0.482199	Gli3_Zic1	ENSMUST00000034904.7|Elovl5|ENSMUSG00000032349.7|ELOVL family member 5, elongation of long chain fatty acids (yeast)
mm10_v2_chr13_+_81783220_81783307	0.477307	Gli3_Zic1	ENSMUST00000022009.8|Cetn3|ENSMUSG00000021537.8|centrin 3
mm10_v2_chr18_+_5593566_5593602	0.47701	Gli3_Zic1	ENSMUST00000160910.1|Zeb1|ENSMUSG00000024238.7|zinc finger E-box binding homeobox 1
mm10_v2_chr13_-_63431683_63431733	0.47475	Gli3_Zic1	ENSMUST00000160931.1|Fancc|ENSMUSG00000021461.10|Fanconi anemia, complementation group C 	ENSMUST00000099444.3|Fancc|ENSMUSG00000021461.10|Fanconi anemia, complementation group C 	ENSMUST00000161977.1|Fancc|ENSMUSG00000021461.10|Fanconi anemia, complementation group C 	ENSMUST00000163091.1|Fancc|ENSMUSG00000021461.10|Fanconi anemia, complementation group C
mm10_v2_chr14_+_55561060_55561071	0.472256	Gli3_Zic1	ENSMUST00000117701.1|Dcaf11|ENSMUSG00000022214.8|DDB1 and CUL4 associated factor 11
mm10_v2_chr2_-_77170592_77170645	0.459566	Gli3_Zic1	ENSMUST00000164114.2|Ccdc141|ENSMUSG00000044033.10|coiled-coil domain containing 141 	ENSMUST00000049544.7|Ccdc141|ENSMUSG00000044033.10|coiled-coil domain containing 141
mm10_v2_chr7_-_111779963_111779993	0.453386	Gli3_Zic1	ENSMUST00000049430.8|Galnt18|ENSMUSG00000038296.8|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 18 	ENSMUST00000106663.1|Galnt18|ENSMUSG00000038296.8|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 18
mm10_v2_chr1_-_75505641_75505703	0.44841	Gli3_Zic1	ENSMUST00000155084.1|Obsl1|ENSMUSG00000026211.11|obscurin-like 1
mm10_v2_chr16_-_20241304_20241363	0.445877	Gli3_Zic1	ENSMUST00000040880.7|Map6d1|ENSMUSG00000041205.7|MAP6 domain containing 1
mm10_v2_chr7_+_128246812_128246948	0.442417	Gli3_Zic1	ENSMUST00000164710.1|Tgfb1i1|ENSMUSG00000030782.9|transforming growth factor beta 1 induced transcript 1 	ENSMUST00000070656.5|Tgfb1i1|ENSMUSG00000030782.9|transforming growth factor beta 1 induced transcript 1
mm10_v2_chr9_+_100643755_100643770	0.420218	Gli3_Zic1	ENSMUST00000133388.1|Stag1|ENSMUSG00000037286.9|stromal antigen 1
mm10_v2_chr4_-_128962420_128962449	0.419032	Gli3_Zic1	ENSMUST00000119354.1|Adc|ENSMUSG00000028789.10|arginine decarboxylase 	ENSMUST00000106068.1|Adc|ENSMUSG00000028789.10|arginine decarboxylase 	ENSMUST00000030581.3|Adc|ENSMUSG00000028789.10|arginine decarboxylase
mm10_v2_chr5_+_149411749_149411811	0.411748	Gli3_Zic1	ENSMUST00000093110.5|Medag|ENSMUSG00000029659.10|mesenteric estrogen dependent adipogenesis
mm10_v2_chr1_+_167598384_167598411	0.408569	Gli3_Zic1	ENSMUST00000015987.3|Rxrg|ENSMUSG00000015843.4|retinoid X receptor gamma
mm10_v2_chr7_-_84605819_84605827	0.400137	Gli3_Zic1	ENSMUST00000032865.9|Fah|ENSMUSG00000030630.9|fumarylacetoacetate hydrolase
mm10_v2_chr9_+_100643605_100643626	0.392415	Gli3_Zic1	ENSMUST00000041418.6|Stag1|ENSMUSG00000037286.9|stromal antigen 1
mm10_v2_chr11_+_87760533_87760587	0.390858	Gli3_Zic1	ENSMUST00000039627.5|Bzrap1|ENSMUSG00000034156.10|benzodiazepine receptor associated protein 1 	ENSMUST00000100644.3|Bzrap1|ENSMUSG00000034156.10|benzodiazepine receptor associated protein 1
mm10_v2_chr9_+_60794468_60794577	0.389804	Gli3_Zic1	ENSMUST00000050183.6|Uaca|ENSMUSG00000034485.9|uveal autoantigen with coiled-coil domains and ankyrin repeats
mm10_v2_chr7_-_80401707_80401754	0.378256	Gli3_Zic1	ENSMUST00000120753.1|Furin|ENSMUSG00000030530.9|furin (paired basic amino acid cleaving enzyme)
mm10_v2_chr11_+_69765970_69766027	0.377078	Gli3_Zic1	ENSMUST00000108642.1|Zbtb4|ENSMUSG00000018750.8|zinc finger and BTB domain containing 4 	ENSMUST00000156932.1|Zbtb4|ENSMUSG00000018750.8|zinc finger and BTB domain containing 4
mm10_v2_chr7_+_128246953_128246993	0.375682	Gli3_Zic1	ENSMUST00000167965.1|Tgfb1i1|ENSMUSG00000030782.9|transforming growth factor beta 1 induced transcript 1
mm10_v2_chr11_+_70647258_70647294	0.375365	Gli3_Zic1	ENSMUST00000037534.7|Rnf167|ENSMUSG00000040746.9|ring finger protein 167
mm10_v2_chr5_-_34187670_34187749	0.372427	Gli3_Zic1	ENSMUST00000042701.6|Mxd4|ENSMUSG00000037235.7|Max dimerization protein 4 	ENSMUST00000119171.1|Mxd4|ENSMUSG00000037235.7|Max dimerization protein 4
mm10_v2_chr11_+_85832551_85832551	0.371735	Gli3_Zic1	ENSMUST00000000095.6|Tbx2|ENSMUSG00000000093.6|T-box 2
mm10_v2_chr2_-_91931675_91931688	0.371267	Gli3_Zic1	ENSMUST00000111309.1|Mdk|ENSMUSG00000027239.8|midkine
mm10_v2_chr11_+_78245743_78245821	0.369272	Gli3_Zic1	ENSMUST00000002133.8|Sdf2|ENSMUSG00000002064.10|stromal cell derived factor 2
mm10_v2_chr11_+_51289920_51290011	0.366029	Gli3_Zic1	ENSMUST00000102765.2|Col23a1|ENSMUSG00000063564.7|collagen, type XXIII, alpha 1
mm10_v2_chr17_-_15041457_15041559	0.364732	Gli3_Zic1	ENSMUST00000097400.4|Gm3448|ENSMUSG00000079710.3|predicted gene 3448 	ENSMUST00000097398.4|Tcte3|ENSMUSG00000079707.3|t-complex-associated testis expressed 3 	ENSMUST00000040746.6|Tcte3|ENSMUSG00000079707.3|t-complex-associated testis expressed 3
mm10_v2_chr16_+_64851991_64851996	0.362331	Gli3_Zic1	ENSMUST00000067744.7|Cggbp1|ENSMUSG00000054604.7|CGG triplet repeat binding protein 1
mm10_v2_chr15_-_89379246_89379262	0.356015	Gli3_Zic1	ENSMUST00000049968.7|Odf3b|ENSMUSG00000047394.7|outer dense fiber of sperm tails 3B
mm10_v2_chr7_+_99535439_99535498	0.355609	Gli3_Zic1	ENSMUST00000098266.2|Arrb1|ENSMUSG00000018909.9|arrestin, beta 1 	ENSMUST00000179755.1|Arrb1|ENSMUSG00000018909.9|arrestin, beta 1
mm10_v2_chr2_-_119477613_119477705	0.353592	Gli3_Zic1	ENSMUST00000110808.1|Ino80|ENSMUSG00000034154.9|INO80 homolog (S. cerevisiae) 	ENSMUST00000049920.7|Ino80|ENSMUSG00000034154.9|INO80 homolog (S. cerevisiae)
mm10_v2_chr7_+_45017953_45018009	0.351764	Gli3_Zic1	ENSMUST00000044111.7|Rras|ENSMUSG00000038387.7|Harvey rat sarcoma oncogene, subgroup R
mm10_v2_chr2_+_102658640_102658669	0.350159	Gli3_Zic1	ENSMUST00000080210.3|Slc1a2|ENSMUSG00000005089.9|solute carrier family 1 (glial high affinity glutamate transporter), member 2
mm10_v2_chr6_+_17491216_17491242	0.347832	Gli3_Zic1	ENSMUST00000080469.5|Met|ENSMUSG00000009376.9|met proto-oncogene
mm10_v2_chr11_-_60352869_60352905	0.345968	Gli3_Zic1	ENSMUST00000095254.5|Tom1l2|ENSMUSG00000000538.12|target of myb1-like 2 (chicken) 	ENSMUST00000102683.4|Tom1l2|ENSMUSG00000000538.12|target of myb1-like 2 (chicken) 	ENSMUST00000093048.6|Tom1l2|ENSMUSG00000000538.12|target of myb1-like 2 (chicken) 	ENSMUST00000093046.6|Tom1l2|ENSMUSG00000000538.12|target of myb1-like 2 (chicken) 	ENSMUST00000064019.8|Tom1l2|ENSMUSG00000000538.12|target of myb1-like 2 (chicken) 	ENSMUST00000102682.4|Tom1l2|ENSMUSG00000000538.12|target of myb1-like 2 (chicken)
mm10_v2_chr1_-_75506331_75506402	0.345218	Gli3_Zic1	ENSMUST00000113567.2|Obsl1|ENSMUSG00000026211.11|obscurin-like 1 	ENSMUST00000113565.2|Obsl1|ENSMUSG00000026211.11|obscurin-like 1
mm10_v2_chr7_+_27499315_27499331	0.344307	Gli3_Zic1	ENSMUST00000098644.2|Prx|ENSMUSG00000053198.7|periaxin 	ENSMUST00000108355.1|Prx|ENSMUSG00000053198.7|periaxin
mm10_v2_chr12_+_103314944_103314962	0.344243	Gli3_Zic1	ENSMUST00000179363.1|Fam181a|ENSMUSG00000096753.1|family with sequence similarity 181, member A
mm10_v2_chr4_+_45848816_45848950	0.343112	Gli3_Zic1	ENSMUST00000107782.1|1300002K09Rik|ENSMUSG00000028327.8|RIKEN cDNA 1300002K09 gene 	ENSMUST00000030011.5|1300002K09Rik|ENSMUSG00000028327.8|RIKEN cDNA 1300002K09 gene
mm10_v2_chr2_+_78869009_78869109	0.340785	Gli3_Zic1	ENSMUST00000028398.7|Ube2e3|ENSMUSG00000027011.8|ubiquitin-conjugating enzyme E2E 3
mm10_v2_chr7_+_130865756_130865812	0.340311	Gli3_Zic1	ENSMUST00000120441.1|Plekha1|ENSMUSG00000040268.10|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1
mm10_v2_chr17_-_34028044_34028076	0.340234	Gli3_Zic1	ENSMUST00000045467.7|H2-Ke6|ENSMUSG00000073422.4|H2-K region expressed gene 6 	ENSMUST00000114303.3|H2-Ke6|ENSMUSG00000073422.4|H2-K region expressed gene 6
mm10_v2_chr14_+_70530819_70530847	0.339932	Gli3_Zic1	ENSMUST00000047331.6|Lgi3|ENSMUSG00000033595.6|leucine-rich repeat LGI family, member 3
mm10_v2_chr11_+_70000578_70000624	0.337589	Gli3_Zic1	ENSMUST00000019362.8|Dvl2|ENSMUSG00000020888.10|dishevelled 2, dsh homolog (Drosophila)
mm10_v2_chr7_-_79131018_79131018	0.336967	Gli3_Zic1	ENSMUST00000032827.7|Hapln3|ENSMUSG00000030606.7|hyaluronan and proteoglycan link protein 3
mm10_v2_chr4_+_133011506_133011546	0.335192	Gli3_Zic1	ENSMUST00000105915.1|Ahdc1|ENSMUSG00000037692.8|AT hook, DNA binding motif, containing 1 	ENSMUST00000105916.1|Ahdc1|ENSMUSG00000037692.8|AT hook, DNA binding motif, containing 1
mm10_v2_chr13_-_54611274_54611297	0.333642	Gli3_Zic1	ENSMUST00000049575.7|Cltb|ENSMUSG00000047547.8|clathrin, light polypeptide (Lcb)
mm10_v2_chrX_-_150812715_150812805	0.332023	Gli3_Zic1	ENSMUST00000112697.3|Maged2|ENSMUSG00000025268.9|melanoma antigen, family D, 2
mm10_v2_chrX_+_73064787_73064787	0.329757	Gli3_Zic1	ENSMUST00000060418.6|Pnma3|ENSMUSG00000046287.6|paraneoplastic antigen MA3
mm10_v2_chr17_+_86963077_86963094	0.328196	Gli3_Zic1	ENSMUST00000024956.8|Rhoq|ENSMUSG00000024143.8|ras homolog gene family, member Q
mm10_v2_chr1_-_125912160_125912214	0.327674	Gli3_Zic1	ENSMUST00000159417.1|Lypd1|ENSMUSG00000026344.3|Ly6/Plaur domain containing 1
mm10_v2_chr7_-_19770509_19770547	0.32543	Gli3_Zic1	ENSMUST00000003061.7|Bcam|ENSMUSG00000002980.8|basal cell adhesion molecule
mm10_v2_chr10_-_22149270_22149270	0.321298	Gli3_Zic1	ENSMUST00000179054.1|E030030I06Rik|ENSMUSG00000055657.8|RIKEN cDNA E030030I06 gene 	ENSMUST00000069372.6|E030030I06Rik|ENSMUSG00000055657.8|RIKEN cDNA E030030I06 gene
mm10_v2_chr3_+_116007457_116007540	0.317623	Gli3_Zic1	ENSMUST00000029575.5|Extl2|ENSMUSG00000027963.8|exostoses (multiple)-like 2 	ENSMUST00000106501.1|Extl2|ENSMUSG00000027963.8|exostoses (multiple)-like 2
mm10_v2_chr7_+_130865835_130865942	0.315689	Gli3_Zic1	ENSMUST00000075181.4|Plekha1|ENSMUSG00000040268.10|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1 	ENSMUST00000048180.5|Plekha1|ENSMUSG00000040268.10|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1
mm10_v2_chr11_+_101176041_101176041	0.314893	Gli3_Zic1	ENSMUST00000103109.3|Cntnap1|ENSMUSG00000017167.6|contactin associated protein-like 1
mm10_v2_chr6_+_17463826_17463829	0.312936	Gli3_Zic1	ENSMUST00000140070.1|Met|ENSMUSG00000009376.9|met proto-oncogene
mm10_v2_chr12_-_4233958_4233981	0.311992	Gli3_Zic1	ENSMUST00000111169.3|Cenpo|ENSMUSG00000020652.11|centromere protein O 	ENSMUST00000020981.5|Cenpo|ENSMUSG00000020652.11|centromere protein O
mm10_v2_chr14_+_51984857_51984971	0.309142	Gli3_Zic1	ENSMUST00000100639.4|Arhgef40|ENSMUSG00000004562.10|Rho guanine nucleotide exchange factor (GEF) 40 	ENSMUST00000182909.1|Arhgef40|ENSMUSG00000004562.10|Rho guanine nucleotide exchange factor (GEF) 40 	ENSMUST00000182760.1|Arhgef40|ENSMUSG00000004562.10|Rho guanine nucleotide exchange factor (GEF) 40 	ENSMUST00000182061.1|Arhgef40|ENSMUSG00000004562.10|Rho guanine nucleotide exchange factor (GEF) 40 	ENSMUST00000182193.1|Arhgef40|ENSMUSG00000004562.10|Rho guanine nucleotide exchange factor (GEF) 40
mm10_v2_chr6_-_118780324_118780324	0.307408	Gli3_Zic1	ENSMUST00000112793.3|Cacna1c|ENSMUSG00000051331.8|calcium channel, voltage-dependent, L type, alpha 1C subunit 	ENSMUST00000075591.6|Cacna1c|ENSMUSG00000051331.8|calcium channel, voltage-dependent, L type, alpha 1C subunit 	ENSMUST00000078320.7|Cacna1c|ENSMUSG00000051331.8|calcium channel, voltage-dependent, L type, alpha 1C subunit 	ENSMUST00000112790.2|Cacna1c|ENSMUSG00000051331.8|calcium channel, voltage-dependent, L type, alpha 1C subunit
mm10_v2_chr13_-_54611332_54611387	0.307142	Gli3_Zic1	ENSMUST00000091609.4|Cltb|ENSMUSG00000047547.8|clathrin, light polypeptide (Lcb)
mm10_v2_chrX_+_137049586_137049654	0.307057	Gli3_Zic1	ENSMUST00000047852.7|Fam199x|ENSMUSG00000042595.7|family with sequence similarity 199, X-linked
mm10_v2_chr5_+_143370092_143370118	0.305408	Gli3_Zic1	ENSMUST00000120825.1|Grid2ip|ENSMUSG00000010825.11|glutamate receptor, ionotropic, delta 2 (Grid2) interacting protein 1
mm10_v2_chr10_+_22645011_22645109	0.304051	Gli3_Zic1	ENSMUST00000042261.4|Slc2a12|ENSMUSG00000037490.5|solute carrier family 2 (facilitated glucose transporter), member 12
mm10_v2_chr9_+_100643448_100643542	0.301223	Gli3_Zic1	ENSMUST00000146312.1|Stag1|ENSMUSG00000037286.9|stromal antigen 1 	ENSMUST00000129269.1|Stag1|ENSMUSG00000037286.9|stromal antigen 1
mm10_v2_chr4_+_15265798_15265831	0.295971	Gli3_Zic1	ENSMUST00000062684.8|Tmem64|ENSMUSG00000043252.8|transmembrane protein 64
mm10_v2_chr18_-_38601268_38601355	0.295456	Gli3_Zic1	ENSMUST00000025295.6|Spry4|ENSMUSG00000024427.6|sprouty homolog 4 (Drosophila)
mm10_v2_chr16_-_85550417_85550432	0.294568	Gli3_Zic1	ENSMUST00000175700.1|Cyyr1|ENSMUSG00000041134.9|cysteine and tyrosine-rich protein 1 	ENSMUST00000114174.2|Cyyr1|ENSMUSG00000041134.9|cysteine and tyrosine-rich protein 1
mm10_v2_chr7_-_142656018_142656058	0.292809	Gli3_Zic1	ENSMUST00000178921.1|Igf2|ENSMUSG00000048583.10|insulin-like growth factor 2
mm10_v2_chr17_+_25366550_25366550	0.286867	Gli3_Zic1	ENSMUST00000069616.7|Tpsb2|ENSMUSG00000033825.9|tryptase beta 2
mm10_v2_chr4_-_154899077_154899135	0.286384	Gli3_Zic1	ENSMUST00000030935.3|Fam213b|ENSMUSG00000029059.3|family with sequence similarity 213, member B 	ENSMUST00000132281.1|Fam213b|ENSMUSG00000029059.3|family with sequence similarity 213, member B
mm10_v2_chr6_+_110645572_110645588	0.28604	Gli3_Zic1	ENSMUST00000071076.6|Grm7|ENSMUSG00000056755.7|glutamate receptor, metabotropic 7 	ENSMUST00000172951.1|Grm7|ENSMUSG00000056755.7|glutamate receptor, metabotropic 7
mm10_v2_chr5_+_117319258_117319284	0.283817	Gli3_Zic1	ENSMUST00000111967.1|Vsig10|ENSMUSG00000066894.8|V-set and immunoglobulin domain containing 10
mm10_v2_chr15_+_9071252_9071273	0.28265	Gli3_Zic1	ENSMUST00000100789.4|Nadk2|ENSMUSG00000022253.8|NAD kinase 2, mitochondrial 	ENSMUST00000100790.3|Nadk2|ENSMUSG00000022253.8|NAD kinase 2, mitochondrial 	ENSMUST00000067760.4|Nadk2|ENSMUSG00000022253.8|NAD kinase 2, mitochondrial
mm10_v2_chr3_-_116007399_116007411	0.280811	Gli3_Zic1	ENSMUST00000067485.3|Slc30a7|ENSMUSG00000054414.3|solute carrier family 30 (zinc transporter), member 7
mm10_v2_chr2_-_39190687_39190746	0.279852	Gli3_Zic1	ENSMUST00000142872.1|Scai|ENSMUSG00000035236.11|suppressor of cancer cell invasion 	ENSMUST00000038874.5|Scai|ENSMUSG00000035236.11|suppressor of cancer cell invasion
mm10_v2_chr5_-_75044562_75044774	0.274141	Gli3_Zic1	ENSMUST00000075452.5|Chic2|ENSMUSG00000029229.7|cysteine-rich hydrophobic domain 2
mm10_v2_chr5_-_122264378_122264460	0.271951	Gli3_Zic1	ENSMUST00000111738.3|Tctn1|ENSMUSG00000038593.12|tectonic family member 1
mm10_v2_chr6_-_142702259_142702290	0.271645	Gli3_Zic1	ENSMUST00000073173.5|Abcc9|ENSMUSG00000030249.9|ATP-binding cassette, sub-family C (CFTR/MRP), member 9 	ENSMUST00000111771.1|Abcc9|ENSMUSG00000030249.9|ATP-binding cassette, sub-family C (CFTR/MRP), member 9 	ENSMUST00000087527.4|Abcc9|ENSMUSG00000030249.9|ATP-binding cassette, sub-family C (CFTR/MRP), member 9 	ENSMUST00000100827.2|Abcc9|ENSMUSG00000030249.9|ATP-binding cassette, sub-family C (CFTR/MRP), member 9
mm10_v2_chr11_+_53519725_53519800	0.271072	Gli3_Zic1	ENSMUST00000108987.1|Sept8|ENSMUSG00000018398.12|septin 8 	ENSMUST00000121334.1|Sept8|ENSMUSG00000018398.12|septin 8 	ENSMUST00000117061.1|Sept8|ENSMUSG00000018398.12|septin 8
mm10_v2_chr11_-_45955465_45955494	0.270044	Gli3_Zic1	ENSMUST00000011398.6|Thg1l|ENSMUSG00000011254.10|tRNA-histidine guanylyltransferase 1-like (S. cerevisiae)
mm10_v2_chr3_+_97158767_97158820	0.269953	Gli3_Zic1	ENSMUST00000090759.4|Acp6|ENSMUSG00000028093.9|acid phosphatase 6, lysophosphatidic
mm10_v2_chr10_+_40349265_40349387	0.2696	Gli3_Zic1	ENSMUST00000044672.4|Cdk19|ENSMUSG00000038481.6|cyclin-dependent kinase 19 	ENSMUST00000095743.2|Cdk19|ENSMUSG00000038481.6|cyclin-dependent kinase 19
mm10_v2_chr14_-_54926784_54926805	0.268937	Gli3_Zic1	ENSMUST00000022813.6|Efs|ENSMUSG00000022203.6|embryonal Fyn-associated substrate
mm10_v2_chr7_-_81454751_81454764	0.264653	Gli3_Zic1	ENSMUST00000098331.3|Cpeb1|ENSMUSG00000025586.10|cytoplasmic polyadenylation element binding protein 1 	ENSMUST00000178892.1|Cpeb1|ENSMUSG00000025586.10|cytoplasmic polyadenylation element binding protein 1
mm10_v2_chr2_+_164879358_164879398	0.264098	Gli3_Zic1	ENSMUST00000041643.3|Pcif1|ENSMUSG00000039849.5|PDX1 C-terminal inhibiting factor 1
mm10_v2_chr10_+_40629987_40630053	0.263256	Gli3_Zic1	ENSMUST00000019977.7|Ddo|ENSMUSG00000063428.7|D-aspartate oxidase
mm10_v2_chr2_-_168230353_168230386	0.263082	Gli3_Zic1	ENSMUST00000154111.1|Dpm1|ENSMUSG00000078919.4|dolichol-phosphate (beta-D) mannosyltransferase 1
mm10_v2_chrM_+_7005_7022	0.26284	Gli3_Zic1	ENSMUST00000082405.1|mt-Co2|ENSMUSG00000064354.1|mitochondrially encoded cytochrome c oxidase II
mm10_v2_chr6_+_43265582_43265681	0.260156	Gli3_Zic1	ENSMUST00000031750.7|Arhgef5|ENSMUSG00000033542.7|Rho guanine nucleotide exchange factor (GEF) 5
mm10_v2_chr10_-_93311073_93311161	0.257983	Gli3_Zic1	ENSMUST00000008542.5|Elk3|ENSMUSG00000008398.8|ELK3, member of ETS oncogene family
mm10_v2_chr5_+_71699918_71699949	0.25606	Gli3_Zic1	ENSMUST00000031122.7|Gabrb1|ENSMUSG00000029212.7|gamma-aminobutyric acid (GABA) A receptor, subunit beta 1
mm10_v2_chr1_-_22805994_22806007	0.255079	Gli3_Zic1	ENSMUST00000097808.4|Rims1|ENSMUSG00000041670.9|regulating synaptic membrane exocytosis 1
mm10_v2_chr6_+_48395652_48395688	0.254533	Gli3_Zic1	ENSMUST00000077093.4|Krba1|ENSMUSG00000042810.8|KRAB-A domain containing 1
mm10_v2_chr12_+_59066908_59066931	0.253582	Gli3_Zic1	ENSMUST00000021381.4|Pnn|ENSMUSG00000020994.4|pinin
mm10_v2_chr8_-_69887687_69887687	0.253189	Gli3_Zic1	ENSMUST00000057831.7|Cilp2|ENSMUSG00000044006.8|cartilage intermediate layer protein 2
mm10_v2_chr17_+_15010266_15010266	0.252063	Gli3_Zic1	ENSMUST00000097395.3|Gm3435|ENSMUSG00000079709.2|predicted gene 3435
mm10_v2_chrX_+_163909132_163909169	0.251591	Gli3_Zic1	ENSMUST00000033734.7|Ap1s2|ENSMUSG00000031367.9|adaptor-related protein complex 1, sigma 2 subunit 	ENSMUST00000112294.2|Ap1s2|ENSMUSG00000031367.9|adaptor-related protein complex 1, sigma 2 subunit
mm10_v2_chr5_+_115506668_115506808	0.249659	Gli3_Zic1	ENSMUST00000067268.8|Pxn|ENSMUSG00000029528.11|paxillin 	ENSMUST00000086523.3|Pxn|ENSMUSG00000029528.11|paxillin
mm10_v2_chr14_-_56811716_56811716	0.24949	Gli3_Zic1	ENSMUST00000039812.9|Zmym5|ENSMUSG00000040123.10|zinc finger, MYM-type 5 	ENSMUST00000111285.2|Zmym5|ENSMUSG00000040123.10|zinc finger, MYM-type 5
mm10_v2_chr11_-_70229677_70229761	0.249355	Gli3_Zic1	ENSMUST00000153449.1|Bcl6b|ENSMUSG00000000317.5|B cell CLL/lymphoma 6, member B 	ENSMUST00000000326.5|Bcl6b|ENSMUSG00000000317.5|B cell CLL/lymphoma 6, member B
mm10_v2_chr17_+_86963279_86963303	0.246985	Gli3_Zic1	ENSMUST00000139344.1|Rhoq|ENSMUSG00000024143.8|ras homolog gene family, member Q
mm10_v2_chr6_+_48395586_48395646	0.245807	Gli3_Zic1	ENSMUST00000114571.1|Krba1|ENSMUSG00000042810.8|KRAB-A domain containing 1 	ENSMUST00000114572.3|Krba1|ENSMUSG00000042810.8|KRAB-A domain containing 1 	ENSMUST00000031815.5|Krba1|ENSMUSG00000042810.8|KRAB-A domain containing 1
mm10_v2_chr12_+_73997749_73997817	0.245162	Gli3_Zic1	ENSMUST00000110451.2|Syt16|ENSMUSG00000044912.9|synaptotagmin XVI
mm10_v2_chr9_-_82975475_82975493	0.243333	Gli3_Zic1	ENSMUST00000034787.5|Phip|ENSMUSG00000032253.7|pleckstrin homology domain interacting protein
mm10_v2_chr10_+_80249441_80249468	0.242422	Gli3_Zic1	ENSMUST00000020361.6|Ndufs7|ENSMUSG00000020153.8|NADH dehydrogenase (ubiquinone) Fe-S protein 7
mm10_v2_chr17_+_25727726_25727797	0.242154	Gli3_Zic1	ENSMUST00000047273.1|Rpusd1|ENSMUSG00000041199.2|RNA pseudouridylate synthase domain containing 1
mm10_v2_chr13_+_44729535_44729697	0.23961	Gli3_Zic1	ENSMUST00000174068.1|Jarid2|ENSMUSG00000038518.9|jumonji, AT rich interactive domain 2
mm10_v2_chr7_-_109439076_109439083	0.237999	Gli3_Zic1	ENSMUST00000106745.2|Stk33|ENSMUSG00000031027.9|serine/threonine kinase 33 	ENSMUST00000090414.4|Stk33|ENSMUSG00000031027.9|serine/threonine kinase 33
mm10_v2_chr14_+_45351473_45351473	0.233902	Gli3_Zic1	ENSMUST00000111835.2|Styx|ENSMUSG00000053205.8|serine/threonine/tyrosine interaction protein
mm10_v2_chr17_+_37045980_37046080	0.230255	Gli3_Zic1	ENSMUST00000174456.1|Gabbr1|ENSMUSG00000024462.11|gamma-aminobutyric acid (GABA) B receptor, 1
mm10_v2_chr1_-_165460430_165460487	0.229268	Gli3_Zic1	ENSMUST00000027856.7|Dcaf6|ENSMUSG00000026571.7|DDB1 and CUL4 associated factor 6
mm10_v2_chr11_-_86544754_86544805	0.229231	Gli3_Zic1	ENSMUST00000138810.1|Rps6kb1|ENSMUSG00000020516.9|ribosomal protein S6 kinase, polypeptide 1 	ENSMUST00000058286.2|Rps6kb1|ENSMUSG00000020516.9|ribosomal protein S6 kinase, polypeptide 1 	ENSMUST00000154617.1|Rps6kb1|ENSMUSG00000020516.9|ribosomal protein S6 kinase, polypeptide 1
mm10_v2_chr16_-_91011093_91011113	0.223816	Gli3_Zic1	ENSMUST00000170853.1|Synj1|ENSMUSG00000022973.11|synaptojanin 1 	ENSMUST00000118390.2|Synj1|ENSMUSG00000022973.11|synaptojanin 1
mm10_v2_chr19_+_42045792_42045897	0.220701	Gli3_Zic1	ENSMUST00000172244.1|Hoga1|ENSMUSG00000025176.8|4-hydroxy-2-oxoglutarate aldolase 1 	ENSMUST00000081714.4|Hoga1|ENSMUSG00000025176.8|4-hydroxy-2-oxoglutarate aldolase 1
mm10_v2_chr16_+_23107413_23107479	0.22067	Gli3_Zic1	ENSMUST00000023599.6|Eif4a2|ENSMUSG00000022884.8|eukaryotic translation initiation factor 4A2 	ENSMUST00000168891.1|Eif4a2|ENSMUSG00000022884.8|eukaryotic translation initiation factor 4A2
mm10_v2_chr18_+_86394952_86394968	0.220556	Gli3_Zic1	ENSMUST00000058829.2|Neto1|ENSMUSG00000050321.2|neuropilin (NRP) and tolloid (TLL)-like 1
mm10_v2_chrX_-_150812932_150813154	0.220435	Gli3_Zic1	ENSMUST00000131241.1|Maged2|ENSMUSG00000025268.9|melanoma antigen, family D, 2 	ENSMUST00000147152.1|Maged2|ENSMUSG00000025268.9|melanoma antigen, family D, 2 	ENSMUST00000143843.1|Maged2|ENSMUSG00000025268.9|melanoma antigen, family D, 2
mm10_v2_chr17_+_15041641_15041641	0.21789	Gli3_Zic1	ENSMUST00000097393.3|Ermard|ENSMUSG00000036552.10|ER membrane associated RNA degradation
mm10_v2_chr5_-_117319242_117319242	0.216656	Gli3_Zic1	ENSMUST00000100834.1|Gm10399|ENSMUSG00000072688.1|predicted gene 10399
mm10_v2_chr10_+_80249106_80249124	0.213745	Gli3_Zic1	ENSMUST00000105364.1|Ndufs7|ENSMUSG00000020153.8|NADH dehydrogenase (ubiquinone) Fe-S protein 7
mm10_v2_chr11_+_60353324_60353408	0.213364	Gli3_Zic1	ENSMUST00000070805.6|Lrrc48|ENSMUSG00000056598.10|leucine rich repeat containing 48 	ENSMUST00000094140.2|Lrrc48|ENSMUSG00000056598.10|leucine rich repeat containing 48 	ENSMUST00000108723.2|Lrrc48|ENSMUSG00000056598.10|leucine rich repeat containing 48 	ENSMUST00000108722.4|Lrrc48|ENSMUSG00000056598.10|leucine rich repeat containing 48
mm10_v2_chr7_-_13034722_13034782	0.213173	Gli3_Zic1	ENSMUST00000005711.4|Chmp2a|ENSMUSG00000033916.4|charged multivesicular body protein 2A
mm10_v2_chrX_+_163908982_163909017	0.211573	Gli3_Zic1	ENSMUST00000069041.8|Ap1s2|ENSMUSG00000031367.9|adaptor-related protein complex 1, sigma 2 subunit
mm10_v2_chr7_+_57591147_57591191	0.211474	Gli3_Zic1	ENSMUST00000039697.7|Gabrb3|ENSMUSG00000033676.7|gamma-aminobutyric acid (GABA) A receptor, subunit beta 3
mm10_v2_chr3_+_95624971_95625021	0.201811	Gli3_Zic1	ENSMUST00000058230.6|Ensa|ENSMUSG00000038619.6|endosulfine alpha 	ENSMUST00000037983.4|Ensa|ENSMUSG00000038619.6|endosulfine alpha
mm10_v2_chr4_-_62208426_62208487	0.201732	Gli3_Zic1	ENSMUST00000068822.3|Zfp37|ENSMUSG00000028389.4|zinc finger protein 37
mm10_v2_chr7_+_25267669_25267723	0.201717	Gli3_Zic1	ENSMUST00000169266.1|Cic|ENSMUSG00000005442.7|capicua homolog (Drosophila)
mm10_v2_chr19_-_5106967_5107023	0.196562	Gli3_Zic1	ENSMUST00000025804.5|Rab1b|ENSMUSG00000024870.5|RAB1B, member RAS oncogene family
mm10_v2_chr13_-_63565520_63565520	0.195998	Gli3_Zic1	ENSMUST00000021921.5|Ptch1|ENSMUSG00000021466.6|patched homolog 1
mm10_v2_chr1_+_36511867_36511903	0.194661	Gli3_Zic1	ENSMUST00000001166.7|Cnnm3|ENSMUSG00000001138.7|cyclin M3 	ENSMUST00000097776.3|Cnnm3|ENSMUSG00000001138.7|cyclin M3
mm10_v2_chr15_-_100584075_100584075	0.192151	Gli3_Zic1	ENSMUST00000184908.1|POU6F1|ENSMUSG00000098598.1|POU domain, class 6, transcription factor 1 (Pou6f1), mRNA
mm10_v2_chr19_+_38481057_38481121	0.189492	Gli3_Zic1	ENSMUST00000182481.1|Plce1|ENSMUSG00000024998.11|phospholipase C, epsilon 1
mm10_v2_chr4_-_41517326_41517337	0.188264	Gli3_Zic1	ENSMUST00000030152.6|1110017D15Rik|ENSMUSG00000028441.6|RIKEN cDNA 1110017D15 gene 	ENSMUST00000095126.4|1110017D15Rik|ENSMUSG00000028441.6|RIKEN cDNA 1110017D15 gene
mm10_v2_chr13_-_117025505_117025541	0.188263	Gli3_Zic1	ENSMUST00000022239.6|Parp8|ENSMUSG00000021725.8|poly (ADP-ribose) polymerase family, member 8
mm10_v2_chr17_+_35220834_35220834	0.188078	Gli3_Zic1	ENSMUST00000118793.1|Gm16181|ENSMUSG00000081650.1|predicted gene 16181
mm10_v2_chr11_-_98149551_98149621	0.187823	Gli3_Zic1	ENSMUST00000103143.3|Fbxl20|ENSMUSG00000020883.12|F-box and leucine-rich repeat protein 20
mm10_v2_chr13_+_54575008_54575017	0.184648	Gli3_Zic1	ENSMUST00000026988.4|Arl10|ENSMUSG00000025870.4|ADP-ribosylation factor-like 10
mm10_v2_chr12_-_70227622_70227683	0.184236	Gli3_Zic1	ENSMUST00000071250.6|Pygl|ENSMUSG00000021069.10|liver glycogen phosphorylase
mm10_v2_chr8_-_41041828_41041866	0.183654	Gli3_Zic1	ENSMUST00000051379.7|Mtus1|ENSMUSG00000045636.10|mitochondrial tumor suppressor 1
mm10_v2_chr9_-_56418023_56418052	0.179333	Gli3_Zic1	ENSMUST00000061552.8|C230081A13Rik|ENSMUSG00000074305.3|RIKEN cDNA C230081A13 gene
mm10_v2_chr5_+_138995038_138995066	0.178787	Gli3_Zic1	ENSMUST00000100518.2|6330403L08Rik|ENSMUSG00000075585.2|RIKEN cDNA 6330403L08 gene
mm10_v2_chr1_+_97770158_97770209	0.175881	Gli3_Zic1	ENSMUST00000112844.3|Gin1|ENSMUSG00000026333.8|gypsy retrotransposon integrase 1 	ENSMUST00000112842.1|Gin1|ENSMUSG00000026333.8|gypsy retrotransposon integrase 1 	ENSMUST00000027571.6|Gin1|ENSMUSG00000026333.8|gypsy retrotransposon integrase 1
mm10_v2_chr19_-_6084679_6084693	0.17224	Gli3_Zic1	ENSMUST00000161548.1|Zfpl1|ENSMUSG00000024792.2|zinc finger like protein 1
mm10_v2_chr1_-_168431896_168431905	0.172135	Gli3_Zic1	ENSMUST00000176540.1|Pbx1|ENSMUSG00000052534.9|pre B cell leukemia homeobox 1
mm10_v2_chr2_-_160872985_160873009	0.17147	Gli3_Zic1	ENSMUST00000109460.1|Zhx3|ENSMUSG00000035877.11|zinc fingers and homeoboxes 3 	ENSMUST00000127201.1|Zhx3|ENSMUSG00000035877.11|zinc fingers and homeoboxes 3
mm10_v2_chr6_+_125009232_125009253	0.170515	Gli3_Zic1	ENSMUST00000112428.1|Zfp384|ENSMUSG00000038346.12|zinc finger protein 384
mm10_v2_chr14_+_84443553_84443568	0.169585	Gli3_Zic1	ENSMUST00000071370.5|Pcdh17|ENSMUSG00000035566.6|protocadherin 17
mm10_v2_chr4_+_123233556_123233556	0.16907	Gli3_Zic1	ENSMUST00000040821.4|Heyl|ENSMUSG00000032744.4|hairy/enhancer-of-split related with YRPW motif-like
mm10_v2_chr11_+_85311232_85311286	0.168658	Gli3_Zic1	ENSMUST00000020835.9|Ppm1d|ENSMUSG00000020525.11|protein phosphatase 1D magnesium-dependent, delta isoform
mm10_v2_chr6_+_125009261_125009317	0.166317	Gli3_Zic1	ENSMUST00000112427.1|Zfp384|ENSMUSG00000038346.12|zinc finger protein 384
mm10_v2_chr1_+_125561010_125561095	0.165697	Gli3_Zic1	ENSMUST00000027580.4|Slc35f5|ENSMUSG00000026342.4|solute carrier family 35, member F5
mm10_v2_chr7_+_65693447_65693477	0.16382	Gli3_Zic1	ENSMUST00000143508.1|Tm2d3|ENSMUSG00000078681.4|TM2 domain containing 3
mm10_v2_chr6_+_125009113_125009179	0.163735	Gli3_Zic1	ENSMUST00000054553.4|Zfp384|ENSMUSG00000038346.12|zinc finger protein 384
mm10_v2_chr19_+_6384395_6384422	0.162163	Gli3_Zic1	ENSMUST00000035269.8|Pygm|ENSMUSG00000032648.8|muscle glycogen phosphorylase 	ENSMUST00000113483.1|Pygm|ENSMUSG00000032648.8|muscle glycogen phosphorylase
mm10_v2_chrX_+_119927196_119927225	0.161374	Gli3_Zic1	ENSMUST00000040961.2|Pabpc5|ENSMUSG00000034732.4|poly(A) binding protein, cytoplasmic 5 	ENSMUST00000113366.1|Pabpc5|ENSMUSG00000034732.4|poly(A) binding protein, cytoplasmic 5
mm10_v2_chr1_-_135167606_135167681	0.157172	Gli3_Zic1	ENSMUST00000027682.8|Gpr37l1|ENSMUSG00000026424.8|G protein-coupled receptor 37-like 1
mm10_v2_chr12_+_32953874_32953891	0.157106	Gli3_Zic1	ENSMUST00000076698.5|Sypl|ENSMUSG00000020570.8|synaptophysin-like protein
mm10_v2_chr8_-_105295934_105296098	0.157038	Gli3_Zic1	ENSMUST00000057855.3|Exoc3l|ENSMUSG00000043251.5|exocyst complex component 3-like
mm10_v2_chr16_-_5255923_5255983	0.155122	Gli3_Zic1	ENSMUST00000139584.1|Fam86|ENSMUSG00000022544.7|family with sequence similarity 86 	ENSMUST00000064635.5|Fam86|ENSMUSG00000022544.7|family with sequence similarity 86
mm10_v2_chr10_+_127165118_127165225	0.15481	Gli3_Zic1	ENSMUST00000006914.9|B4galnt1|ENSMUSG00000006731.9|beta-1,4-N-acetyl-galactosaminyl transferase 1
mm10_v2_chr19_+_5038826_5038938	0.154651	Gli3_Zic1	ENSMUST00000053705.6|B3gnt1|ENSMUSG00000047379.6|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 1
mm10_v2_chr14_-_56811464_56811464	0.153855	Gli3_Zic1	ENSMUST00000173954.1|Zmym5|ENSMUSG00000040123.10|zinc finger, MYM-type 5
mm10_v2_chr4_-_151108454_151108576	0.152211	Gli3_Zic1	ENSMUST00000105670.1|Camta1|ENSMUSG00000014592.13|calmodulin binding transcription activator 1
mm10_v2_chr1_-_128103016_128103053	0.149914	Gli3_Zic1	ENSMUST00000097597.2|Zranb3|ENSMUSG00000036086.10|zinc finger, RAN-binding domain containing 3
mm10_v2_chr13_+_54575020_54575093	0.149291	Gli3_Zic1	ENSMUST00000156024.1|Arl10|ENSMUSG00000025870.4|ADP-ribosylation factor-like 10
mm10_v2_chr10_+_19951055_19951055	0.14911	Gli3_Zic1	ENSMUST00000152533.1|Map3k5|ENSMUSG00000071369.4|mitogen-activated protein kinase kinase kinase 5
mm10_v2_chr5_+_3803160_3803193	0.148917	Gli3_Zic1	ENSMUST00000171023.1|Krit1|ENSMUSG00000000600.9|KRIT1, ankyrin repeat containing 	ENSMUST00000080085.4|Krit1|ENSMUSG00000000600.9|KRIT1, ankyrin repeat containing
mm10_v2_chr11_-_45955183_45955193	0.148217	Gli3_Zic1	ENSMUST00000109254.1|Thg1l|ENSMUSG00000011254.10|tRNA-histidine guanylyltransferase 1-like (S. cerevisiae)
mm10_v2_chr8_-_85840877_85840957	0.143004	Gli3_Zic1	ENSMUST00000034140.7|Itfg1|ENSMUSG00000031703.7|integrin alpha FG-GAP repeat containing 1
mm10_v2_chrX_-_59568068_59568094	0.142539	Gli3_Zic1	ENSMUST00000119833.1|Fgf13|ENSMUSG00000031137.11|fibroblast growth factor 13 	ENSMUST00000131319.1|Fgf13|ENSMUSG00000031137.11|fibroblast growth factor 13
mm10_v2_chr13_+_54949388_54949481	0.142438	Gli3_Zic1	ENSMUST00000026994.7|Unc5a|ENSMUSG00000025876.9|unc-5 homolog A (C. elegans) 	ENSMUST00000109994.2|Unc5a|ENSMUSG00000025876.9|unc-5 homolog A (C. elegans)
mm10_v2_chr16_-_30550560_30550594	0.140599	Gli3_Zic1	ENSMUST00000140402.1|Tmem44|ENSMUSG00000022537.11|transmembrane protein 44
mm10_v2_chr4_+_12089373_12089441	0.139904	Gli3_Zic1	ENSMUST00000095143.2|Rbm12b2|ENSMUSG00000052137.5|RNA binding motif protein 12 B2 	ENSMUST00000063839.5|Rbm12b2|ENSMUSG00000052137.5|RNA binding motif protein 12 B2
mm10_v2_chr5_+_135887905_135887923	0.139095	Gli3_Zic1	ENSMUST00000005077.6|Hspb1|ENSMUSG00000004951.10|heat shock protein 1
mm10_v2_chr3_+_27984145_27984314	0.138518	Gli3_Zic1	ENSMUST00000067757.4|Pld1|ENSMUSG00000027695.10|phospholipase D1
mm10_v2_chr13_+_44729794_44729807	0.138478	Gli3_Zic1	ENSMUST00000172830.1|Jarid2|ENSMUSG00000038518.9|jumonji, AT rich interactive domain 2
mm10_v2_chr4_+_147940859_147940920	0.137931	Gli3_Zic1	ENSMUST00000103232.1|2510039O18Rik|ENSMUSG00000044496.6|RIKEN cDNA 2510039O18 gene
mm10_v2_chr1_-_153332724_153332804	0.137652	Gli3_Zic1	ENSMUST00000027752.8|Lamc1|ENSMUSG00000026478.8|laminin, gamma 1
mm10_v2_chr13_-_9764943_9764994	0.137221	Gli3_Zic1	ENSMUST00000110634.1|Zmynd11|ENSMUSG00000021156.10|zinc finger, MYND domain containing 11
mm10_v2_chr1_-_93801840_93801945	0.136146	Gli3_Zic1	ENSMUST00000112890.2|Dtymk|ENSMUSG00000026281.9|deoxythymidylate kinase 	ENSMUST00000027503.7|Dtymk|ENSMUSG00000026281.9|deoxythymidylate kinase
mm10_v2_chr17_+_34894515_34894573	0.135883	Gli3_Zic1	ENSMUST00000052778.8|Zbtb12|ENSMUSG00000049823.8|zinc finger and BTB domain containing 12
mm10_v2_chr9_+_86695542_86695542	0.134996	Gli3_Zic1	ENSMUST00000150367.2|A330041J22Rik|ENSMUSG00000087466.2|RIKEN cDNA A330041J22 gene
mm10_v2_chr7_-_109438998_109439017	0.134954	Gli3_Zic1	ENSMUST00000121378.1|Stk33|ENSMUSG00000031027.9|serine/threonine kinase 33
mm10_v2_chr9_+_45055166_45055195	0.134513	Gli3_Zic1	ENSMUST00000114664.1|Mpzl3|ENSMUSG00000070305.4|myelin protein zero-like 3 	ENSMUST00000093856.3|Mpzl3|ENSMUSG00000070305.4|myelin protein zero-like 3
mm10_v2_chr11_-_61494173_61494296	0.134459	Gli3_Zic1	ENSMUST00000101085.2|Mapk7|ENSMUSG00000001034.11|mitogen-activated protein kinase 7 	ENSMUST00000079080.6|Mapk7|ENSMUSG00000001034.11|mitogen-activated protein kinase 7 	ENSMUST00000108714.1|Mapk7|ENSMUSG00000001034.11|mitogen-activated protein kinase 7
mm10_v2_chr5_+_135887988_135888018	0.133913	Gli3_Zic1	ENSMUST00000111155.1|Hspb1|ENSMUSG00000004951.10|heat shock protein 1
mm10_v2_chr16_-_91011308_91011431	0.132772	Gli3_Zic1	ENSMUST00000121759.1|Synj1|ENSMUSG00000022973.11|synaptojanin 1
mm10_v2_chr1_+_15287259_15287259	0.132527	Gli3_Zic1	ENSMUST00000175681.1|Kcnb2|ENSMUSG00000092083.3|potassium voltage gated channel, Shab-related subfamily, member 2
mm10_v2_chrX_+_18162575_18162657	0.132383	Gli3_Zic1	ENSMUST00000044484.6|Kdm6a|ENSMUSG00000037369.10|lysine (K)-specific demethylase 6A 	ENSMUST00000052368.8|Kdm6a|ENSMUSG00000037369.10|lysine (K)-specific demethylase 6A
mm10_v2_chr9_+_110305185_110305229	0.132044	Gli3_Zic1	ENSMUST00000068071.7|Elp6|ENSMUSG00000054836.8|elongator acetyltransferase complex subunit 6
mm10_v2_chr10_-_127288999_127289035	0.128024	Gli3_Zic1	ENSMUST00000119078.1|Mbd6|ENSMUSG00000025409.8|methyl-CpG binding domain protein 6
mm10_v2_chr19_-_5085483_5085531	0.125624	Gli3_Zic1	ENSMUST00000140389.1|Tmem151a|ENSMUSG00000061451.7|transmembrane protein 151A 	ENSMUST00000151413.1|Tmem151a|ENSMUSG00000061451.7|transmembrane protein 151A 	ENSMUST00000077066.7|Tmem151a|ENSMUSG00000061451.7|transmembrane protein 151A
mm10_v2_chr5_+_24425232_24425291	0.124492	Gli3_Zic1	ENSMUST00000080067.6|Slc4a2|ENSMUSG00000028962.8|solute carrier family 4 (anion exchanger), member 2
mm10_v2_chr17_+_56326045_56326097	0.123961	Gli3_Zic1	ENSMUST00000139679.1|Kdm4b|ENSMUSG00000024201.6|lysine (K)-specific demethylase 4B 	ENSMUST00000025036.4|Kdm4b|ENSMUSG00000024201.6|lysine (K)-specific demethylase 4B 	ENSMUST00000086835.5|Kdm4b|ENSMUSG00000024201.6|lysine (K)-specific demethylase 4B
mm10_v2_chr5_-_138994935_138995037	0.122884	Gli3_Zic1	ENSMUST00000046901.7|Pdgfa|ENSMUSG00000025856.9|platelet derived growth factor, alpha 	ENSMUST00000076095.7|Pdgfa|ENSMUSG00000025856.9|platelet derived growth factor, alpha
mm10_v2_chr19_-_41263931_41264008	0.122397	Gli3_Zic1	ENSMUST00000025989.8|Tm9sf3|ENSMUSG00000025016.10|transmembrane 9 superfamily member 3
mm10_v2_chr1_-_69108039_69108064	0.122235	Gli3_Zic1	ENSMUST00000121473.1|Erbb4|ENSMUSG00000062209.9|v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian)
mm10_v2_chr4_+_48045144_48045160	0.122136	Gli3_Zic1	ENSMUST00000030025.3|Nr4a3|ENSMUSG00000028341.3|nuclear receptor subfamily 4, group A, member 3
mm10_v2_chr13_+_44730726_44730838	0.12074	Gli3_Zic1	ENSMUST00000173704.1|Jarid2|ENSMUSG00000038518.9|jumonji, AT rich interactive domain 2 	ENSMUST00000044608.7|Jarid2|ENSMUSG00000038518.9|jumonji, AT rich interactive domain 2 	ENSMUST00000173367.1|Jarid2|ENSMUSG00000038518.9|jumonji, AT rich interactive domain 2
mm10_v2_chr11_+_116030304_116030385	0.120736	Gli3_Zic1	ENSMUST00000021116.5|Unk|ENSMUSG00000020770.7|unkempt homolog (Drosophila) 	ENSMUST00000106452.1|Unk|ENSMUSG00000020770.7|unkempt homolog (Drosophila)
mm10_v2_chr1_-_56972437_56972502	0.119847	Gli3_Zic1	ENSMUST00000042857.7|Satb2|ENSMUSG00000038331.9|special AT-rich sequence binding protein 2
mm10_v2_chr17_-_27204357_27204447	0.119672	Gli3_Zic1	ENSMUST00000055117.7|Lemd2|ENSMUSG00000044857.7|LEM domain containing 2
mm10_v2_chr17_-_65772686_65772752	0.11836	Gli3_Zic1	ENSMUST00000070673.7|Rab31|ENSMUSG00000056515.8|RAB31, member RAS oncogene family
mm10_v2_chr3_-_101110278_101110294	0.117179	Gli3_Zic1	ENSMUST00000102694.3|Ptgfrn|ENSMUSG00000027864.8|prostaglandin F2 receptor negative regulator
mm10_v2_chr1_-_153900198_153900210	0.116006	Gli3_Zic1	ENSMUST00000123490.1|5830403L16Rik|ENSMUSG00000045968.6|RIKEN cDNA 5830403L16 gene
mm10_v2_chr9_-_108578657_108578675	0.115167	Gli3_Zic1	ENSMUST00000068700.5|Wdr6|ENSMUSG00000066357.5|WD repeat domain 6
mm10_v2_chr11_+_4135167_4135222	0.112581	Gli3_Zic1	ENSMUST00000003677.4|Rnf215|ENSMUSG00000003581.8|ring finger protein 215 	ENSMUST00000145705.1|Rnf215|ENSMUSG00000003581.8|ring finger protein 215
mm10_v2_chr17_-_24209377_24209416	0.110372	Gli3_Zic1	ENSMUST00000024931.4|Ntn3|ENSMUSG00000079662.1|netrin 3
mm10_v2_chr11_+_72796164_72796246	0.108755	Gli3_Zic1	ENSMUST00000172220.1|Zzef1|ENSMUSG00000055670.7|zinc finger, ZZ-type with EF hand domain 1
mm10_v2_chr19_-_4698315_4698315	0.108724	Gli3_Zic1	ENSMUST00000096325.3|Gm960|ENSMUSG00000071691.4|predicted gene 960
mm10_v2_chr8_+_46492789_46492832	0.106808	Gli3_Zic1	ENSMUST00000110371.1|Acsl1|ENSMUSG00000018796.6|acyl-CoA synthetase long-chain family member 1
mm10_v2_chr10_+_26772477_26772515	0.104612	Gli3_Zic1	ENSMUST00000039557.7|Arhgap18|ENSMUSG00000039031.9|Rho GTPase activating protein 18
mm10_v2_chr2_-_73529725_73529736	0.103912	Gli3_Zic1	ENSMUST00000094681.4|Wipf1|ENSMUSG00000075284.4|WAS/WASL interacting protein family, member 1
mm10_v2_chr17_-_23599487_23599547	0.10386	Gli3_Zic1	ENSMUST00000057029.4|Zfp13|ENSMUSG00000062012.7|zinc finger protein 13
mm10_v2_chr2_+_181497165_181497216	0.103722	Gli3_Zic1	ENSMUST00000149163.1|Tpd52l2|ENSMUSG00000000827.12|tumor protein D52-like 2 	ENSMUST00000000844.8|Tpd52l2|ENSMUSG00000000827.12|tumor protein D52-like 2 	ENSMUST00000184849.1|Tpd52l2|ENSMUSG00000000827.12|tumor protein D52-like 2 	ENSMUST00000108800.1|Tpd52l2|ENSMUSG00000000827.12|tumor protein D52-like 2 	ENSMUST00000069712.2|Tpd52l2|ENSMUSG00000000827.12|tumor protein D52-like 2
mm10_v2_chr11_-_118248507_118248571	0.101121	Gli3_Zic1	ENSMUST00000017276.7|Cyth1|ENSMUSG00000017132.11|cytohesin 1
mm10_v2_chr5_+_105519388_105519425	0.100634	Gli3_Zic1	ENSMUST00000067924.6|Lrrc8c|ENSMUSG00000054720.6|leucine rich repeat containing 8 family, member C 	ENSMUST00000150981.1|Lrrc8c|ENSMUSG00000054720.6|leucine rich repeat containing 8 family, member C
mm10_v2_chr5_+_117319292_117319326	0.0972097	Gli3_Zic1	ENSMUST00000086464.4|Vsig10|ENSMUSG00000066894.8|V-set and immunoglobulin domain containing 10
mm10_v2_chr7_+_65693417_65693446	0.0959662	Gli3_Zic1	ENSMUST00000032726.7|Tm2d3|ENSMUSG00000078681.4|TM2 domain containing 3 	ENSMUST00000107495.3|Tm2d3|ENSMUSG00000078681.4|TM2 domain containing 3
mm10_v2_chr7_+_80186835_80186904	0.0959092	Gli3_Zic1	ENSMUST00000107383.1|Sema4b|ENSMUSG00000030539.7|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B 	ENSMUST00000032754.7|Sema4b|ENSMUSG00000030539.7|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B
mm10_v2_chr15_+_75969287_75969312	0.0958612	Gli3_Zic1	ENSMUST00000147641.1|Zfp707|ENSMUSG00000034429.8|zinc finger protein 707
mm10_v2_chr6_-_35539765_35539888	0.0958547	Gli3_Zic1	ENSMUST00000031866.5|Mtpn|ENSMUSG00000029840.5|myotrophin
mm10_v2_chr8_+_105170668_105170686	0.0958514	Gli3_Zic1	ENSMUST00000109395.1|Cbfb|ENSMUSG00000031885.7|core binding factor beta 	ENSMUST00000109394.1|Cbfb|ENSMUSG00000031885.7|core binding factor beta 	ENSMUST00000052209.2|Cbfb|ENSMUSG00000031885.7|core binding factor beta 	ENSMUST00000109392.1|Cbfb|ENSMUSG00000031885.7|core binding factor beta
mm10_v2_chr15_+_75969123_75969189	0.0921624	Gli3_Zic1	ENSMUST00000109966.1|Zfp707|ENSMUSG00000034429.8|zinc finger protein 707 	ENSMUST00000109967.3|Zfp707|ENSMUSG00000034429.8|zinc finger protein 707
mm10_v2_chr7_-_140116395_140116476	0.0917859	Gli3_Zic1	ENSMUST00000026538.6|Echs1|ENSMUSG00000025465.6|enoyl Coenzyme A hydratase, short chain, 1, mitochondrial
mm10_v2_chr2_+_35282380_35282442	0.0907812	Gli3_Zic1	ENSMUST00000028239.6|Gsn|ENSMUSG00000026879.8|gelsolin
mm10_v2_chr8_+_11728105_11728143	0.0904663	Gli3_Zic1	ENSMUST00000110909.2|Arhgef7|ENSMUSG00000031511.8|Rho guanine nucleotide exchange factor (GEF7) 	ENSMUST00000033908.6|Arhgef7|ENSMUSG00000031511.8|Rho guanine nucleotide exchange factor (GEF7)
mm10_v2_chr15_-_97844254_97844318	0.0876167	Gli3_Zic1	ENSMUST00000119670.1|Hdac7|ENSMUSG00000022475.12|histone deacetylase 7 	ENSMUST00000116409.2|Hdac7|ENSMUSG00000022475.12|histone deacetylase 7
mm10_v2_chr1_-_180483410_180483504	0.0874048	Gli3_Zic1	ENSMUST00000136521.1|6330403A02Rik|ENSMUSG00000053963.6|RIKEN cDNA 6330403A02 gene 	ENSMUST00000179826.1|6330403A02Rik|ENSMUSG00000053963.6|RIKEN cDNA 6330403A02 gene
mm10_v2_chr19_+_8735808_8735864	0.084259	Gli3_Zic1	ENSMUST00000049424.9|Wdr74|ENSMUSG00000042729.9|WD repeat domain 74
mm10_v2_chr8_-_95434869_95434901	0.0841702	Gli3_Zic1	ENSMUST00000034249.6|Gtl3|ENSMUSG00000031796.6|gene trap locus 3
mm10_v2_chr17_-_25727364_25727426	0.082875	Gli3_Zic1	ENSMUST00000170070.1|Chtf18|ENSMUSG00000019214.7|CTF18, chromosome transmission fidelity factor 18 	ENSMUST00000048054.7|Chtf18|ENSMUSG00000019214.7|CTF18, chromosome transmission fidelity factor 18
mm10_v2_chr12_-_32953772_32953846	0.0799115	Gli3_Zic1	ENSMUST00000180391.1|4933406C10Rik|ENSMUSG00000097494.1|RIKEN cDNA 4933406C10 gene 	ENSMUST00000181670.1|4933406C10Rik|ENSMUSG00000097494.1|RIKEN cDNA 4933406C10 gene
mm10_v2_chrX_+_101383726_101383741	0.0793193	Gli3_Zic1	ENSMUST00000119190.1|Gjb1|ENSMUSG00000047797.8|gap junction protein, beta 1
mm10_v2_chr11_+_75655873_75655918	0.0791517	Gli3_Zic1	ENSMUST00000108431.2|Myo1c|ENSMUSG00000017774.13|myosin IC
mm10_v2_chr15_-_97844164_97844245	0.0788393	Gli3_Zic1	ENSMUST00000120683.1|Hdac7|ENSMUSG00000022475.12|histone deacetylase 7
mm10_v2_chr7_+_125603420_125603437	0.0782025	Gli3_Zic1	ENSMUST00000033000.6|Il21r|ENSMUSG00000030745.8|interleukin 21 receptor
mm10_v2_chr8_-_85080679_85080746	0.0774859	Gli3_Zic1	ENSMUST00000093357.5|Wdr83|ENSMUSG00000005150.10|WD repeat domain containing 83
mm10_v2_chr6_+_92940572_92940592	0.0774075	Gli3_Zic1	ENSMUST00000181145.1|9530026P05Rik|ENSMUSG00000097462.1|RIKEN cDNA 9530026P05 gene 	ENSMUST00000181840.1|9530026P05Rik|ENSMUSG00000097462.1|RIKEN cDNA 9530026P05 gene
mm10_v2_chr4_-_147848358_147848425	0.0770157	Gli3_Zic1	ENSMUST00000105718.1|Zfp933|ENSMUSG00000059423.7|zinc finger protein 933 	ENSMUST00000135798.1|Zfp933|ENSMUSG00000059423.7|zinc finger protein 933
mm10_v2_chr9_-_44735189_44735213	0.0769534	Gli3_Zic1	ENSMUST00000034611.8|Phldb1|ENSMUSG00000048537.9|pleckstrin homology-like domain, family B, member 1
mm10_v2_chrX_-_74393003_74393072	0.0766745	Gli3_Zic1	ENSMUST00000015427.6|Fam3a|ENSMUSG00000031399.9|family with sequence similarity 3, member A
mm10_v2_chr17_-_56609689_56609771	0.0765001	Gli3_Zic1	ENSMUST00000052832.5|2410015M20Rik|ENSMUSG00000049760.5|RIKEN cDNA 2410015M20 gene
mm10_v2_chr7_+_73391160_73391296	0.0757689	Gli3_Zic1	ENSMUST00000128471.1|Rgma|ENSMUSG00000070509.9|RGM domain family, member A
mm10_v2_chr5_-_134456227_134456263	0.0745033	Gli3_Zic1	ENSMUST00000111244.1|Gtf2ird1|ENSMUSG00000023079.8|general transcription factor II I repeat domain-containing 1
mm10_v2_chr15_+_40655020_40655054	0.0740156	Gli3_Zic1	ENSMUST00000053467.4|Zfpm2|ENSMUSG00000022306.8|zinc finger protein, multitype 2
mm10_v2_chr1_-_155099630_155099636	0.0731933	Gli3_Zic1	ENSMUST00000055322.4|Ier5|ENSMUSG00000056708.4|immediate early response 5
mm10_v2_chr9_+_45906513_45906569	0.0727707	Gli3_Zic1	ENSMUST00000039059.6|Pcsk7|ENSMUSG00000035382.8|proprotein convertase subtilisin/kexin type 7
mm10_v2_chr4_-_126202757_126202762	0.0714152	Gli3_Zic1	ENSMUST00000080919.5|Thrap3|ENSMUSG00000043962.10|thyroid hormone receptor associated protein 3
mm10_v2_chr10_+_128706251_128706264	0.069156	Gli3_Zic1	ENSMUST00000054125.8|Pmel|ENSMUSG00000025359.9|premelanosome protein
mm10_v2_chr1_+_128103297_128103311	0.0687396	Gli3_Zic1	ENSMUST00000036288.4|R3hdm1|ENSMUSG00000056211.7|R3H domain containing 1
mm10_v2_chr5_-_137786681_137786715	0.068491	Gli3_Zic1	ENSMUST00000132726.1|Mepce|ENSMUSG00000029726.10|methylphosphate capping enzyme
mm10_v2_chr11_-_118248590_118248607	0.0682114	Gli3_Zic1	ENSMUST00000106305.2|Cyth1|ENSMUSG00000017132.11|cytohesin 1
mm10_v2_chr4_+_48585276_48585365	0.0672925	Gli3_Zic1	ENSMUST00000123476.1|Tmeff1|ENSMUSG00000028347.8|transmembrane protein with EGF-like and two follistatin-like domains 1
mm10_v2_chr10_+_126978690_126978749	0.0672219	Gli3_Zic1	ENSMUST00000105256.2|Ctdsp2|ENSMUSG00000078429.2|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2
mm10_v2_chr4_+_48585135_48585187	0.0670698	Gli3_Zic1	ENSMUST00000030032.6|Tmeff1|ENSMUSG00000028347.8|transmembrane protein with EGF-like and two follistatin-like domains 1
mm10_v2_chr16_-_96082389_96082481	0.0644249	Gli3_Zic1	ENSMUST00000099502.2|Brwd1|ENSMUSG00000022914.9|bromodomain and WD repeat domain containing 1 	ENSMUST00000023631.8|Brwd1|ENSMUSG00000022914.9|bromodomain and WD repeat domain containing 1 	ENSMUST00000113829.1|Brwd1|ENSMUSG00000022914.9|bromodomain and WD repeat domain containing 1 	ENSMUST00000153398.1|Brwd1|ENSMUSG00000022914.9|bromodomain and WD repeat domain containing 1
mm10_v2_chr4_+_154869585_154869636	0.0636652	Gli3_Zic1	ENSMUST00000079269.7|Mmel1|ENSMUSG00000058183.8|membrane metallo-endopeptidase-like 1 	ENSMUST00000163732.1|Mmel1|ENSMUSG00000058183.8|membrane metallo-endopeptidase-like 1 	ENSMUST00000080559.6|Mmel1|ENSMUSG00000058183.8|membrane metallo-endopeptidase-like 1
mm10_v2_chr17_+_24669730_24669752	0.0628921	Gli3_Zic1	ENSMUST00000047179.5|Zfp598|ENSMUSG00000041130.9|zinc finger protein 598
mm10_v2_chr12_+_76370266_76370266	0.062807	Gli3_Zic1	ENSMUST00000042779.3|Zbtb1|ENSMUSG00000033454.6|zinc finger and BTB domain containing 1
mm10_v2_chr11_+_50237002_50237014	0.0604924	Gli3_Zic1	ENSMUST00000180443.1|Gm26542|ENSMUSG00000097887.1|predicted gene, 26542
mm10_v2_chr15_+_99392882_99392903	0.0580976	Gli3_Zic1	ENSMUST00000023749.8|Tmbim6|ENSMUSG00000023010.8|transmembrane BAX inhibitor motif containing 6
mm10_v2_chr15_+_99392948_99393022	0.0562215	Gli3_Zic1	ENSMUST00000161250.1|Tmbim6|ENSMUSG00000023010.8|transmembrane BAX inhibitor motif containing 6 	ENSMUST00000160635.1|Tmbim6|ENSMUSG00000023010.8|transmembrane BAX inhibitor motif containing 6 	ENSMUST00000161778.1|Tmbim6|ENSMUSG00000023010.8|transmembrane BAX inhibitor motif containing 6
mm10_v2_chr4_-_137766474_137766501	0.0558637	Gli3_Zic1	ENSMUST00000139951.1|Alpl|ENSMUSG00000028766.4|alkaline phosphatase, liver/bone/kidney
mm10_v2_chr7_-_109438786_109438837	0.05571	Gli3_Zic1	ENSMUST00000121748.1|Stk33|ENSMUSG00000031027.9|serine/threonine kinase 33
mm10_v2_chr15_-_78718113_78718113	0.0551676	Gli3_Zic1	ENSMUST00000088592.4|Elfn2|ENSMUSG00000043460.6|leucine rich repeat and fibronectin type III, extracellular 2
mm10_v2_chr11_+_4135233_4135282	0.0537603	Gli3_Zic1	ENSMUST00000124670.1|Rnf215|ENSMUSG00000003581.8|ring finger protein 215
mm10_v2_chr11_+_72796254_72796268	0.0533292	Gli3_Zic1	ENSMUST00000069395.5|Zzef1|ENSMUSG00000055670.7|zinc finger, ZZ-type with EF hand domain 1
mm10_v2_chr2_+_131234043_131234136	0.0519959	Gli3_Zic1	ENSMUST00000041362.5|Mavs|ENSMUSG00000037523.7|mitochondrial antiviral signaling protein 	ENSMUST00000110199.2|Mavs|ENSMUSG00000037523.7|mitochondrial antiviral signaling protein
mm10_v2_chr5_+_67306941_67306977	0.0517924	Gli3_Zic1	ENSMUST00000162372.1|Slc30a9|ENSMUSG00000029221.9|solute carrier family 30 (zinc transporter), member 9 	ENSMUST00000113676.2|Slc30a9|ENSMUSG00000029221.9|solute carrier family 30 (zinc transporter), member 9
mm10_v2_chr5_-_123721007_123721062	0.0504494	Gli3_Zic1	ENSMUST00000031376.7|Zcchc8|ENSMUSG00000029427.7|zinc finger, CCHC domain containing 8
mm10_v2_chr6_+_125009665_125009805	0.0487489	Gli3_Zic1	ENSMUST00000046064.10|Zfp384|ENSMUSG00000038346.12|zinc finger protein 384 	ENSMUST00000152752.1|Zfp384|ENSMUSG00000038346.12|zinc finger protein 384 	ENSMUST00000088308.3|Zfp384|ENSMUSG00000038346.12|zinc finger protein 384 	ENSMUST00000112425.1|Zfp384|ENSMUSG00000038346.12|zinc finger protein 384 	ENSMUST00000084275.5|Zfp384|ENSMUSG00000038346.12|zinc finger protein 384
mm10_v2_chr7_-_4778141_4778144	0.048387	Gli3_Zic1	ENSMUST00000094892.5|Il11|ENSMUSG00000004371.8|interleukin 11
mm10_v2_chr17_+_35135196_35135243	0.0480729	Gli3_Zic1	ENSMUST00000172571.1|Bag6|ENSMUSG00000024392.11|BCL2-associated athanogene 6 	ENSMUST00000173491.1|Bag6|ENSMUSG00000024392.11|BCL2-associated athanogene 6
mm10_v2_chr5_-_148928619_148928659	0.0478812	Gli3_Zic1	ENSMUST00000149169.1|Katnal1|ENSMUSG00000041298.9|katanin p60 subunit A-like 1 	ENSMUST00000047257.8|Katnal1|ENSMUSG00000041298.9|katanin p60 subunit A-like 1
mm10_v2_chr9_+_31386187_31386235	0.0475402	Gli3_Zic1	ENSMUST00000086167.5|Nfrkb|ENSMUSG00000042185.7|nuclear factor related to kappa B binding protein
mm10_v2_chr11_+_69095217_69095289	0.0474405	Gli3_Zic1	ENSMUST00000101004.2|Per1|ENSMUSG00000020893.11|period circadian clock 1
mm10_v2_chr12_-_80436571_80436603	0.0459666	Gli3_Zic1	ENSMUST00000054145.6|Dcaf5|ENSMUSG00000049106.6|DDB1 and CUL4 associated factor 5
mm10_v2_chrX_-_59567348_59567472	0.0451889	Gli3_Zic1	ENSMUST00000124402.1|Fgf13|ENSMUSG00000031137.11|fibroblast growth factor 13
mm10_v2_chr10_-_120979327_120979373	0.042732	Gli3_Zic1	ENSMUST00000119944.1|Lemd3|ENSMUSG00000048661.8|LEM domain containing 3 	ENSMUST00000119093.1|Lemd3|ENSMUSG00000048661.8|LEM domain containing 3
mm10_v2_chr4_-_43031429_43031456	0.041737	Gli3_Zic1	ENSMUST00000136326.1|Stoml2|ENSMUSG00000028455.9|stomatin (Epb7.2)-like 2
mm10_v2_chr7_-_19665005_19665030	0.0391192	Gli3_Zic1	ENSMUST00000055242.9|Clptm1|ENSMUSG00000002981.9|cleft lip and palate associated transmembrane protein 1
mm10_v2_chr2_+_181497223_181497244	0.0390987	Gli3_Zic1	ENSMUST00000108799.3|Tpd52l2|ENSMUSG00000000827.12|tumor protein D52-like 2
mm10_v2_chr1_+_191906743_191906767	0.0387876	Gli3_Zic1	ENSMUST00000044954.6|Slc30a1|ENSMUSG00000037434.7|solute carrier family 30 (zinc transporter), member 1
mm10_v2_chr8_+_85840971_85841028	0.0369286	Gli3_Zic1	ENSMUST00000053771.7|Phkb|ENSMUSG00000036879.9|phosphorylase kinase beta 	ENSMUST00000161850.1|Phkb|ENSMUSG00000036879.9|phosphorylase kinase beta
mm10_v2_chr4_-_70534904_70534987	0.036622	Gli3_Zic1	ENSMUST00000107359.2|Megf9|ENSMUSG00000039270.3|multiple EGF-like-domains 9
mm10_v2_chr13_+_118714678_118714701	0.0352599	Gli3_Zic1	ENSMUST00000022246.8|Fgf10|ENSMUSG00000021732.8|fibroblast growth factor 10
mm10_v2_chr16_+_10411928_10411965	0.033053	Gli3_Zic1	ENSMUST00000023146.4|Nubp1|ENSMUSG00000022503.4|nucleotide binding protein 1
mm10_v2_chr8_+_3493135_3493212	0.032094	Gli3_Zic1	ENSMUST00000061508.7|Zfp358|ENSMUSG00000047264.7|zinc finger protein 358
mm10_v2_chr9_-_79793507_79793519	0.0300198	Gli3_Zic1	ENSMUST00000120690.1|Tmem30a|ENSMUSG00000032328.6|transmembrane protein 30A
mm10_v2_chrX_-_73966329_73966376	0.0295404	Gli3_Zic1	ENSMUST00000114372.2|Hcfc1|ENSMUSG00000031386.8|host cell factor C1 	ENSMUST00000033761.6|Hcfc1|ENSMUSG00000031386.8|host cell factor C1
mm10_v2_chr8_-_107096510_107096562	0.0289021	Gli3_Zic1	ENSMUST00000068388.8|Terf2|ENSMUSG00000031921.11|telomeric repeat binding factor 2 	ENSMUST00000133925.1|Terf2|ENSMUSG00000031921.11|telomeric repeat binding factor 2 	ENSMUST00000068421.6|Terf2|ENSMUSG00000031921.11|telomeric repeat binding factor 2 	ENSMUST00000116425.2|Terf2|ENSMUSG00000031921.11|telomeric repeat binding factor 2
mm10_v2_chr9_-_79793378_79793430	0.0287677	Gli3_Zic1	ENSMUST00000034878.5|Tmem30a|ENSMUSG00000032328.6|transmembrane protein 30A
mm10_v2_chr2_-_125723387_125723537	0.0279652	Gli3_Zic1	ENSMUST00000042246.7|Shc4|ENSMUSG00000035109.8|SHC (Src homology 2 domain containing) family, member 4
mm10_v2_chr2_+_106693185_106693278	0.0270442	Gli3_Zic1	ENSMUST00000111063.1|Mpped2|ENSMUSG00000016386.9|metallophosphoesterase domain containing 2
mm10_v2_chr5_-_21055880_21055961	0.0267207	Gli3_Zic1	ENSMUST00000030556.7|Ptpn12|ENSMUSG00000028771.7|protein tyrosine phosphatase, non-receptor type 12
mm10_v2_chrX_+_74329058_74329076	0.0266148	Gli3_Zic1	ENSMUST00000004326.3|Plxna3|ENSMUSG00000031398.7|plexin A3
mm10_v2_chr11_-_109363654_109363654	0.0249145	Gli3_Zic1	ENSMUST00000070956.3|Gm11696|ENSMUSG00000056687.3|predicted gene 11696
mm10_v2_chr15_-_100669535_100669560	0.0240379	Gli3_Zic1	ENSMUST00000183211.1|Bin2|ENSMUSG00000098112.1|bridging integrator 2
mm10_v2_chr15_-_100669512_100669529	0.023132	Gli3_Zic1	ENSMUST00000182574.1|Bin2|ENSMUSG00000098112.1|bridging integrator 2 	ENSMUST00000182775.1|Bin2|ENSMUSG00000098112.1|bridging integrator 2
mm10_v2_chr11_-_42000532_42000592	0.0231037	Gli3_Zic1	ENSMUST00000070735.3|Gabrg2|ENSMUSG00000020436.11|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2
mm10_v2_chr4_-_4138432_4138480	0.022847	Gli3_Zic1	ENSMUST00000070375.7|Penk|ENSMUSG00000045573.9|preproenkephalin
mm10_v2_chr16_-_32247152_32247179	0.0226854	Gli3_Zic1	ENSMUST00000042732.5|Fbxo45|ENSMUSG00000035764.5|F-box protein 45
mm10_v2_chr1_+_43445736_43445830	0.0217588	Gli3_Zic1	ENSMUST00000086421.5|Nck2|ENSMUSG00000066877.5|non-catalytic region of tyrosine kinase adaptor protein 2 	ENSMUST00000114744.1|Nck2|ENSMUSG00000066877.5|non-catalytic region of tyrosine kinase adaptor protein 2
mm10_v2_chr15_-_100669496_100669511	0.0213719	Gli3_Zic1	ENSMUST00000182814.1|Bin2|ENSMUSG00000098112.1|bridging integrator 2 	ENSMUST00000182068.1|Bin2|ENSMUSG00000098112.1|bridging integrator 2
mm10_v2_chr3_+_79885930_79886002	0.0205035	Gli3_Zic1	ENSMUST00000029567.8|Fam198b|ENSMUSG00000027955.10|family with sequence similarity 198, member B
mm10_v2_chr9_+_80067452_80067493	0.0197081	Gli3_Zic1	ENSMUST00000165607.2|Senp6|ENSMUSG00000034252.8|SUMO/sentrin specific peptidase 6
mm10_v2_chr7_-_99626936_99627103	0.0195904	Gli3_Zic1	ENSMUST00000178124.1|Gm4980|ENSMUSG00000096606.1|predicted gene 4980
mm10_v2_chr17_+_34187789_34187828	0.0195226	Gli3_Zic1	ENSMUST00000041633.8|Tap1|ENSMUSG00000037321.11|transporter 1, ATP-binding cassette, sub-family B (MDR/TAP)
mm10_v2_chr11_+_77763246_77763339	0.0195058	Gli3_Zic1	ENSMUST00000108375.2|Myo18a|ENSMUSG00000000631.13|myosin XVIIIA
mm10_v2_chr2_-_150668198_150668258	0.0194968	Gli3_Zic1	ENSMUST00000028944.3|Acss1|ENSMUSG00000027452.5|acyl-CoA synthetase short-chain family member 1
mm10_v2_chr12_-_93929102_93929102	0.0175018	Gli3_Zic1	ENSMUST00000180321.1|Gm9726|ENSMUSG00000094935.1|predicted gene 9726
mm10_v2_chr17_+_35135174_35135181	0.0173226	Gli3_Zic1	ENSMUST00000166426.2|Bag6|ENSMUSG00000024392.11|BCL2-associated athanogene 6 	ENSMUST00000025250.7|Bag6|ENSMUSG00000024392.11|BCL2-associated athanogene 6
mm10_v2_chr16_+_17561885_17562042	0.0170172	Gli3_Zic1	ENSMUST00000171002.1|P2rx6|ENSMUSG00000022758.6|purinergic receptor P2X, ligand-gated ion channel, 6 	ENSMUST00000023441.4|P2rx6|ENSMUSG00000022758.6|purinergic receptor P2X, ligand-gated ion channel, 6
mm10_v2_chr5_-_32746272_32746313	0.0167025	Gli3_Zic1	ENSMUST00000120591.1|Pisd|ENSMUSG00000023452.12|phosphatidylserine decarboxylase
mm10_v2_chr8_+_23139064_23139105	0.015807	Gli3_Zic1	ENSMUST00000033947.8|Ank1|ENSMUSG00000031543.12|ankyrin 1, erythroid
mm10_v2_chr16_+_38562821_38562861	0.0155971	Gli3_Zic1	ENSMUST00000163948.1|Tmem39a|ENSMUSG00000002845.8|transmembrane protein 39a
mm10_v2_chr4_-_151108244_151108303	0.0150071	Gli3_Zic1	ENSMUST00000131948.1|Camta1|ENSMUSG00000014592.13|calmodulin binding transcription activator 1
mm10_v2_chr17_+_34187545_34187571	0.0140223	Gli3_Zic1	ENSMUST00000170086.1|Tap1|ENSMUSG00000037321.11|transporter 1, ATP-binding cassette, sub-family B (MDR/TAP)
mm10_v2_chr3_+_106547693_106547888	0.0136065	Gli3_Zic1	ENSMUST00000117469.1|Dram2|ENSMUSG00000027900.9|DNA-damage regulated autophagy modulator 2 	ENSMUST00000067630.6|Dram2|ENSMUSG00000027900.9|DNA-damage regulated autophagy modulator 2 	ENSMUST00000134396.1|Dram2|ENSMUSG00000027900.9|DNA-damage regulated autophagy modulator 2 	ENSMUST00000144746.1|Dram2|ENSMUSG00000027900.9|DNA-damage regulated autophagy modulator 2 	ENSMUST00000121034.1|Dram2|ENSMUSG00000027900.9|DNA-damage regulated autophagy modulator 2 	ENSMUST00000029507.6|Dram2|ENSMUSG00000027900.9|DNA-damage regulated autophagy modulator 2 	ENSMUST00000132923.1|Dram2|ENSMUSG00000027900.9|DNA-damage regulated autophagy modulator 2 	ENSMUST00000151465.1|Dram2|ENSMUSG00000027900.9|DNA-damage regulated autophagy modulator 2
mm10_v2_chr11_-_116654245_116654325	0.0123993	Gli3_Zic1	ENSMUST00000021166.5|Cygb|ENSMUSG00000020810.5|cytoglobin
mm10_v2_chr9_+_118506226_118506318	0.0104699	Gli3_Zic1	ENSMUST00000084820.4|Golga4|ENSMUSG00000038708.9|golgi autoantigen, golgin subfamily a, 4
mm10_v2_chr7_+_83891983_83892033	0.00917678	Gli3_Zic1	ENSMUST00000094215.3|Mesdc2|ENSMUSG00000038503.8|mesoderm development candidate 2 	ENSMUST00000130103.1|Mesdc2|ENSMUSG00000038503.8|mesoderm development candidate 2
mm10_v2_chrX_+_152144240_152144272	0.00789537	Gli3_Zic1	ENSMUST00000168786.1|Iqsec2|ENSMUSG00000041115.10|IQ motif and Sec7 domain 2 	ENSMUST00000112605.1|Iqsec2|ENSMUSG00000041115.10|IQ motif and Sec7 domain 2 	ENSMUST00000112604.1|Iqsec2|ENSMUSG00000041115.10|IQ motif and Sec7 domain 2
mm10_v2_chr5_-_115436508_115436606	0.00742698	Gli3_Zic1	ENSMUST00000078701.3|4930430O22Rik|ENSMUSG00000057354.3|RIKEN cDNA 4930430O22 gene
mm10_v2_chr11_-_102556122_102556199	0.00724447	Gli3_Zic1	ENSMUST00000143842.1|Gpatch8|ENSMUSG00000034621.8|G patch domain containing 8
mm10_v2_chr10_-_77113676_77113705	0.00713372	Gli3_Zic1	ENSMUST00000072755.4|Col18a1|ENSMUSG00000001435.8|collagen, type XVIII, alpha 1 	ENSMUST00000105409.1|Col18a1|ENSMUSG00000001435.8|collagen, type XVIII, alpha 1
mm10_v2_chr17_+_37045963_37045975	0.00545185	Gli3_Zic1	ENSMUST00000025338.9|Gabbr1|ENSMUSG00000024462.11|gamma-aminobutyric acid (GABA) B receptor, 1
mm10_v2_chr19_+_55316313_55316367	0.00544509	Gli3_Zic1	ENSMUST00000095950.2|Vti1a|ENSMUSG00000024983.9|vesicle transport through interaction with t-SNAREs 1A
mm10_v2_chr8_-_13890233_13890300	0.00481465	Gli3_Zic1	ENSMUST00000033839.7|Coprs|ENSMUSG00000031458.7|coordinator of PRMT5, differentiation stimulator
mm10_v2_chr17_-_56874421_56874460	0.00437855	Gli3_Zic1	ENSMUST00000043062.4|Acsbg2|ENSMUSG00000024207.8|acyl-CoA synthetase bubblegum family member 2
mm10_v2_chr4_+_12140263_12140317	0.00343576	Gli3_Zic1	ENSMUST00000050069.2|Rbm12b1|ENSMUSG00000046667.8|RNA binding motif protein 12 B1 	ENSMUST00000069128.7|Rbm12b1|ENSMUSG00000046667.8|RNA binding motif protein 12 B1
mm10_v2_chr2_+_181520485_181520531	0.00341538	Gli3_Zic1	ENSMUST00000072334.5|Dnajc5|ENSMUSG00000000826.10|DnaJ (Hsp40) homolog, subfamily C, member 5
mm10_v2_chr2_-_119547627_119547627	0.00186271	Gli3_Zic1	ENSMUST00000060009.2|Exd1|ENSMUSG00000048647.3|exonuclease 3'-5' domain containing 1
mm10_v2_chr6_+_91684061_91684132	0.000129564	Gli3_Zic1	ENSMUST00000032185.7|Slc6a6|ENSMUSG00000030096.7|solute carrier family 6 (neurotransmitter transporter, taurine), member 6
