mm10_v2_chr9_-_96862903_96862985	10.0573	Hoxa1	ENSMUST00000121077.1|Acpl2|ENSMUSG00000043587.9|acid phosphatase-like 2 	ENSMUST00000124923.1|Acpl2|ENSMUSG00000043587.9|acid phosphatase-like 2
mm10_v2_chr3_+_55782500_55782521	7.55691	Hoxa1	ENSMUST00000075422.4|Mab21l1|ENSMUSG00000056947.4|mab-21-like 1 (C. elegans)
mm10_v2_chr9_+_15239045_15239155	6.41909	Hoxa1	ENSMUST00000034413.6|Vstm5|ENSMUSG00000031937.6|V-set and transmembrane domain containing 5
mm10_v2_chr2_+_158375638_158375721	5.69374	Hoxa1	ENSMUST00000109488.1|Snhg11|ENSMUSG00000044349.9|small nucleolar RNA host gene 11
mm10_v2_chr2_+_165595009_165595080	4.71675	Hoxa1	ENSMUST00000088132.6|Eya2|ENSMUSG00000017897.12|eyes absent 2 homolog (Drosophila)
mm10_v2_chr4_-_143299498_143299564	4.67067	Hoxa1	ENSMUST00000030317.7|Pdpn|ENSMUSG00000028583.8|podoplanin
mm10_v2_chr19_-_41743665_41743706	4.66469	Hoxa1	ENSMUST00000025993.3|Slit1|ENSMUSG00000025020.5|slit homolog 1 (Drosophila)
mm10_v2_chr7_+_73391160_73391296	4.44761	Hoxa1	ENSMUST00000128471.1|Rgma|ENSMUSG00000070509.9|RGM domain family, member A
mm10_v2_chr2_-_26246707_26246707	4.27276	Hoxa1	ENSMUST00000166349.1|C030048H21Rik|ENSMUSG00000090340.1|RIKEN cDNA C030048H21 gene
mm10_v2_chr1_+_153665274_153665325	3.78839	Hoxa1	ENSMUST00000152114.1|Rgs8|ENSMUSG00000042671.6|regulator of G-protein signaling 8 	ENSMUST00000111812.1|Rgs8|ENSMUSG00000042671.6|regulator of G-protein signaling 8
mm10_v2_chr14_+_70077375_70077445	3.59774	Hoxa1	ENSMUST00000035908.1|Egr3|ENSMUSG00000033730.3|early growth response 3
mm10_v2_chr2_+_163225363_163225469	3.47165	Hoxa1	ENSMUST00000099110.3|Tox2|ENSMUSG00000074607.5|TOX high mobility group box family member 2 	ENSMUST00000165937.1|Tox2|ENSMUSG00000074607.5|TOX high mobility group box family member 2
mm10_v2_chr4_-_35845204_35845204	3.40213	Hoxa1	ENSMUST00000164772.1|Lingo2|ENSMUSG00000045083.8|leucine rich repeat and Ig domain containing 2 	ENSMUST00000065173.2|Lingo2|ENSMUSG00000045083.8|leucine rich repeat and Ig domain containing 2
mm10_v2_chr3_-_110143937_110144011	3.22907	Hoxa1	ENSMUST00000051253.3|Ntng1|ENSMUSG00000050836.3|netrin G1
mm10_v2_chr10_+_26078255_26078255	2.92714	Hoxa1	ENSMUST00000041011.3|Gm9767|ENSMUSG00000039098.3|predicted gene 9767
mm10_v2_chr15_-_95528702_95528777	2.70333	Hoxa1	ENSMUST00000166170.1|Nell2|ENSMUSG00000022454.10|NEL-like 2
mm10_v2_chr15_+_98167806_98167873	2.61294	Hoxa1	ENSMUST00000031914.4|AI836003|ENSMUSG00000029875.4|expressed sequence AI836003
mm10_v2_chr2_+_152962485_152962510	2.50657	Hoxa1	ENSMUST00000099197.2|Ttll9|ENSMUSG00000074673.9|tubulin tyrosine ligase-like family, member 9 	ENSMUST00000103155.3|Ttll9|ENSMUSG00000074673.9|tubulin tyrosine ligase-like family, member 9
mm10_v2_chr5_+_27261916_27261980	2.32199	Hoxa1	ENSMUST00000101471.3|Dpp6|ENSMUSG00000061576.9|dipeptidylpeptidase 6
mm10_v2_chr10_-_63421739_63421739	1.9601	Hoxa1	ENSMUST00000054760.4|Gm7075|ENSMUSG00000048185.4|predicted gene 7075
mm10_v2_chr4_-_143299463_143299482	1.91408	Hoxa1	ENSMUST00000119654.1|Pdpn|ENSMUSG00000028583.8|podoplanin
mm10_v2_chr4_-_106799779_106799846	1.7311	Hoxa1	ENSMUST00000145061.1|Acot11|ENSMUSG00000034853.10|acyl-CoA thioesterase 11 	ENSMUST00000102762.3|Acot11|ENSMUSG00000034853.10|acyl-CoA thioesterase 11
mm10_v2_chr10_-_92162753_92162765	1.55794	Hoxa1	ENSMUST00000182197.1|Rmst|ENSMUSG00000097348.2|rhabdomyosarcoma 2 associated transcript (non-coding RNA)
mm10_v2_chr6_-_136875794_136875811	1.51737	Hoxa1	ENSMUST00000032342.1|Mgp|ENSMUSG00000030218.1|matrix Gla protein
mm10_v2_chr9_+_65890237_65890343	1.49823	Hoxa1	ENSMUST00000045802.6|2810417H13Rik|ENSMUSG00000040204.6|RIKEN cDNA 2810417H13 gene
mm10_v2_chr6_-_52012476_52012551	1.47487	Hoxa1	ENSMUST00000078214.5|Skap2|ENSMUSG00000059182.5|src family associated phosphoprotein 2
mm10_v2_chr7_-_30534180_30534180	1.45689	Hoxa1	ENSMUST00000044338.4|Arhgap33|ENSMUSG00000036882.6|Rho GTPase activating protein 33
mm10_v2_chr7_-_16917184_16917212	1.42318	Hoxa1	ENSMUST00000173139.1|Calm3|ENSMUSG00000019370.10|calmodulin 3
mm10_v2_chr4_+_128688726_128688795	1.39849	Hoxa1	ENSMUST00000106080.1|Phc2|ENSMUSG00000028796.11|polyhomeotic-like 2 (Drosophila)
mm10_v2_chr18_-_13972617_13972733	1.39584	Hoxa1	ENSMUST00000025288.7|Zfp521|ENSMUSG00000024420.8|zinc finger protein 521
mm10_v2_chr18_+_4994600_4994623	1.39146	Hoxa1	ENSMUST00000140448.1|Svil|ENSMUSG00000024236.11|supervillin
mm10_v2_chr12_+_53248677_53248677	1.31859	Hoxa1	ENSMUST00000101432.2|Npas3|ENSMUSG00000021010.7|neuronal PAS domain protein 3
mm10_v2_chr2_+_65845767_65845799	1.31164	Hoxa1	ENSMUST00000122912.1|Csrnp3|ENSMUSG00000044647.10|cysteine-serine-rich nuclear protein 3
mm10_v2_chr2_+_90885860_90885872	1.23554	Hoxa1	ENSMUST00000111466.2|C1qtnf4|ENSMUSG00000040794.5|C1q and tumor necrosis factor related protein 4
mm10_v2_chr10_+_94576254_94576270	1.19949	Hoxa1	ENSMUST00000117929.1|Tmcc3|ENSMUSG00000020023.11|transmembrane and coiled coil domains 3
mm10_v2_chr13_-_60177357_60177373	1.16928	Hoxa1	ENSMUST00000065086.4|Gas1|ENSMUSG00000052957.7|growth arrest specific 1
mm10_v2_chr2_+_65845833_65845850	1.14482	Hoxa1	ENSMUST00000053910.3|Csrnp3|ENSMUSG00000044647.10|cysteine-serine-rich nuclear protein 3
mm10_v2_chr4_+_101507855_101507871	1.02976	Hoxa1	ENSMUST00000038207.5|Dnajc6|ENSMUSG00000028528.10|DnaJ (Hsp40) homolog, subfamily C, member 6
mm10_v2_chr8_-_8639363_8639363	1.01985	Hoxa1	ENSMUST00000152698.1|Efnb2|ENSMUSG00000001300.9|ephrin B2
mm10_v2_chr4_+_101507947_101508032	1.01805	Hoxa1	ENSMUST00000149047.1|Dnajc6|ENSMUSG00000028528.10|DnaJ (Hsp40) homolog, subfamily C, member 6 	ENSMUST00000106929.3|Dnajc6|ENSMUSG00000028528.10|DnaJ (Hsp40) homolog, subfamily C, member 6
mm10_v2_chr10_+_14523062_14523065	0.922313	Hoxa1	ENSMUST00000096020.5|Gm10335|ENSMUSG00000071532.5|predicted gene 10335
mm10_v2_chr3_-_89093358_89093367	0.889318	Hoxa1	ENSMUST00000090929.5|Rusc1|ENSMUSG00000041263.8|RUN and SH3 domain containing 1 	ENSMUST00000052539.6|Rusc1|ENSMUSG00000041263.8|RUN and SH3 domain containing 1
mm10_v2_chr5_+_88583527_88583590	0.709874	Hoxa1	ENSMUST00000031229.6|Rufy3|ENSMUSG00000029291.7|RUN and FYVE domain containing 3
mm10_v2_chr1_+_10993452_10993478	0.68808	Hoxa1	ENSMUST00000027056.5|Prex2|ENSMUSG00000048960.7|phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 2
mm10_v2_chr13_+_72628802_72628825	0.656342	Hoxa1	ENSMUST00000074372.4|Irx2|ENSMUSG00000001504.9|Iroquois related homeobox 2 (Drosophila)
mm10_v2_chr3_-_58525867_58525873	0.64178	Hoxa1	ENSMUST00000029385.7|Serp1|ENSMUSG00000027808.7|stress-associated endoplasmic reticulum protein 1
mm10_v2_chr15_+_74516196_74516219	0.619752	Hoxa1	ENSMUST00000042035.9|Bai1|ENSMUSG00000034730.10|brain-specific angiogenesis inhibitor 1
mm10_v2_chr8_+_95825353_95825354	0.610828	Hoxa1	ENSMUST00000074053.4|Gm10094|ENSMUSG00000061104.4|predicted gene 10094
mm10_v2_chr17_-_25081138_25081201	0.561628	Hoxa1	ENSMUST00000024984.6|Tmem204|ENSMUSG00000024168.7|transmembrane protein 204
mm10_v2_chr9_+_58129476_58129501	0.549089	Hoxa1	ENSMUST00000133287.1|Stra6|ENSMUSG00000032327.8|stimulated by retinoic acid gene 6
mm10_v2_chr11_+_24080664_24080706	0.547509	Hoxa1	ENSMUST00000118955.1|Bcl11a|ENSMUSG00000000861.9|B cell CLL/lymphoma 11A (zinc finger protein)
mm10_v2_chr9_-_4796218_4796267	0.494961	Hoxa1	ENSMUST00000027020.6|Gria4|ENSMUSG00000025892.9|glutamate receptor, ionotropic, AMPA4 (alpha 4) 	ENSMUST00000063508.7|Gria4|ENSMUSG00000025892.9|glutamate receptor, ionotropic, AMPA4 (alpha 4) 	ENSMUST00000163309.1|Gria4|ENSMUSG00000025892.9|glutamate receptor, ionotropic, AMPA4 (alpha 4)
mm10_v2_chr9_+_59589288_59589353	0.470505	Hoxa1	ENSMUST00000121266.1|Celf6|ENSMUSG00000032297.5|CUGBP, Elav-like family member 6 	ENSMUST00000118164.1|Celf6|ENSMUSG00000032297.5|CUGBP, Elav-like family member 6
mm10_v2_chr11_+_103774150_103774193	0.446479	Hoxa1	ENSMUST00000000127.5|Wnt3|ENSMUSG00000000125.5|wingless-related MMTV integration site 3
mm10_v2_chr9_-_21312255_21312333	0.446214	Hoxa1	ENSMUST00000115433.3|Ap1m2|ENSMUSG00000003309.7|adaptor protein complex AP-1, mu 2 subunit 	ENSMUST00000003397.7|Ap1m2|ENSMUSG00000003309.7|adaptor protein complex AP-1, mu 2 subunit
mm10_v2_chr16_-_18876522_18876570	0.417264	Hoxa1	ENSMUST00000119273.1|Mrpl40|ENSMUSG00000022706.9|mitochondrial ribosomal protein L40
mm10_v2_chr11_-_102296618_102296681	0.38731	Hoxa1	ENSMUST00000107132.2|Atxn7l3|ENSMUSG00000059995.6|ataxin 7-like 3 	ENSMUST00000073234.2|Atxn7l3|ENSMUSG00000059995.6|ataxin 7-like 3
mm10_v2_chr6_-_88446491_88446539	0.36662	Hoxa1	ENSMUST00000165242.1|Eefsec|ENSMUSG00000033216.7|eukaryotic elongation factor, selenocysteine-tRNA-specific
mm10_v2_chr14_-_69503316_69503362	0.342966	Hoxa1	ENSMUST00000179116.2|Gm21464|ENSMUSG00000093954.2|predicted gene, 21464
mm10_v2_chr1_+_89454769_89454885	0.333452	Hoxa1	ENSMUST00000027521.8|Agap1|ENSMUSG00000055013.8|ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 	ENSMUST00000074945.5|Agap1|ENSMUSG00000055013.8|ArfGAP with GTPase domain, ankyrin repeat and PH domain 1
mm10_v2_chr11_-_40755201_40755311	0.318978	Hoxa1	ENSMUST00000020576.7|Ccng1|ENSMUSG00000020326.7|cyclin G1
mm10_v2_chr10_+_79988584_79988683	0.313622	Hoxa1	ENSMUST00000004784.4|Cnn2|ENSMUSG00000004665.4|calponin 2 	ENSMUST00000105374.1|Cnn2|ENSMUSG00000004665.4|calponin 2
mm10_v2_chr18_+_56562443_56562593	0.306424	Hoxa1	ENSMUST00000130163.1|Phax|ENSMUSG00000008301.5|phosphorylated adaptor for RNA export 	ENSMUST00000132628.1|Phax|ENSMUSG00000008301.5|phosphorylated adaptor for RNA export
mm10_v2_chr17_-_28622479_28622521	0.301273	Hoxa1	ENSMUST00000130643.1|Srpk1|ENSMUSG00000004865.9|serine/arginine-rich protein specific kinase 1
mm10_v2_chrX_-_75578188_75578247	0.284509	Hoxa1	ENSMUST00000033545.5|Rab39b|ENSMUSG00000031202.5|RAB39B, member RAS oncogene family
mm10_v2_chr17_-_90455872_90456026	0.25562	Hoxa1	ENSMUST00000174337.1|Nrxn1|ENSMUSG00000024109.12|neurexin I 	ENSMUST00000172466.1|Nrxn1|ENSMUSG00000024109.12|neurexin I
mm10_v2_chr8_-_67515606_67515606	0.246691	Hoxa1	ENSMUST00000032981.5|Gm9755|ENSMUSG00000030735.5|predicted pseudogene 9755
mm10_v2_chr16_-_18876655_18876767	0.243031	Hoxa1	ENSMUST00000023391.8|Mrpl40|ENSMUSG00000022706.9|mitochondrial ribosomal protein L40
mm10_v2_chr7_+_144838590_144838614	0.213907	Hoxa1	ENSMUST00000105898.1|Fgf3|ENSMUSG00000031074.8|fibroblast growth factor 3
mm10_v2_chr9_+_58129321_58129349	0.204892	Hoxa1	ENSMUST00000034880.3|Stra6|ENSMUSG00000032327.8|stimulated by retinoic acid gene 6
mm10_v2_chr12_-_80260356_80260371	0.197045	Hoxa1	ENSMUST00000021554.8|Actn1|ENSMUSG00000015143.8|actinin, alpha 1
mm10_v2_chr9_+_58129062_58129088	0.195775	Hoxa1	ENSMUST00000085677.2|Stra6|ENSMUSG00000032327.8|stimulated by retinoic acid gene 6
mm10_v2_chr11_-_5898771_5898788	0.189162	Hoxa1	ENSMUST00000102921.3|Myl7|ENSMUSG00000020469.8|myosin, light polypeptide 7, regulatory
mm10_v2_chr6_+_91684061_91684132	0.187896	Hoxa1	ENSMUST00000032185.7|Slc6a6|ENSMUSG00000030096.7|solute carrier family 6 (neurotransmitter transporter, taurine), member 6
mm10_v2_chrX_+_38600626_38600691	0.186961	Hoxa1	ENSMUST00000000365.2|Mcts1|ENSMUSG00000000355.7|malignant T cell amplified sequence 1
mm10_v2_chr2_-_152951688_152951700	0.16751	Hoxa1	ENSMUST00000109811.3|Dusp15|ENSMUSG00000042662.10|dual specificity phosphatase-like 15
mm10_v2_chr17_+_78491549_78491565	0.165211	Hoxa1	ENSMUST00000079363.4|Gm10093|ENSMUSG00000061062.4|predicted pseudogene 10093
mm10_v2_chr5_+_137030275_137030295	0.159488	Hoxa1	ENSMUST00000041543.8|Vgf|ENSMUSG00000037428.8|VGF nerve growth factor inducible
mm10_v2_chr17_+_55445375_55445389	0.146282	Hoxa1	ENSMUST00000133899.1|St6gal2|ENSMUSG00000024172.4|beta galactoside alpha 2,6 sialyltransferase 2 	ENSMUST00000086878.3|St6gal2|ENSMUSG00000024172.4|beta galactoside alpha 2,6 sialyltransferase 2
mm10_v2_chr13_+_72628831_72628971	0.144767	Hoxa1	ENSMUST00000169028.1|Irx2|ENSMUSG00000001504.9|Iroquois related homeobox 2 (Drosophila)
mm10_v2_chr2_+_112261926_112261951	0.133097	Hoxa1	ENSMUST00000028553.3|Nop10|ENSMUSG00000027133.3|NOP10 ribonucleoprotein
mm10_v2_chr3_-_79145875_79145930	0.130882	Hoxa1	ENSMUST00000118340.1|Rapgef2|ENSMUSG00000062232.8|Rap guanine nucleotide exchange factor (GEF) 2
mm10_v2_chr17_-_28622419_28622473	0.121095	Hoxa1	ENSMUST00000114767.1|Srpk1|ENSMUSG00000004865.9|serine/arginine-rich protein specific kinase 1
mm10_v2_chr7_+_3694512_3694552	0.113821	Hoxa1	ENSMUST00000108627.3|Tsen34|ENSMUSG00000035585.10|tRNA splicing endonuclease 34 homolog (S. cerevisiae)
mm10_v2_chrX_-_134161928_134161928	0.105701	Hoxa1	ENSMUST00000033611.4|Xkrx|ENSMUSG00000031258.4|X Kell blood group precursor related X linked
mm10_v2_chr7_+_119690026_119690026	0.096872	Hoxa1	ENSMUST00000047045.8|Acsm4|ENSMUSG00000047026.8|acyl-CoA synthetase medium-chain family member 4
mm10_v2_chr5_+_135369942_135369997	0.0923805	Hoxa1	ENSMUST00000000940.8|Nsun5|ENSMUSG00000000916.9|NOL1/NOP2/Sun domain family, member 5
mm10_v2_chr14_+_66344369_66344380	0.0603068	Hoxa1	ENSMUST00000118426.1|Stmn4|ENSMUSG00000022044.8|stathmin-like 4 	ENSMUST00000121955.1|Stmn4|ENSMUSG00000022044.8|stathmin-like 4 	ENSMUST00000120229.1|Stmn4|ENSMUSG00000022044.8|stathmin-like 4 	ENSMUST00000134440.1|Stmn4|ENSMUSG00000022044.8|stathmin-like 4
mm10_v2_chr5_+_42067960_42067960	0.0363359	Hoxa1	ENSMUST00000087332.4|Gm16223|ENSMUSG00000067285.4|predicted gene 16223
mm10_v2_chr10_+_75037291_75037332	0.0262819	Hoxa1	ENSMUST00000139384.1|Rab36|ENSMUSG00000020175.7|RAB36, member RAS oncogene family
