mm10_v2_chr1_+_19103022_19103043	8.42826	Hoxa6	ENSMUST00000037294.7|Tfap2d|ENSMUSG00000042596.7|transcription factor AP-2, delta
mm10_v2_chr16_+_42907563_42907684	7.68242	Hoxa6	ENSMUST00000151244.1|Zbtb20|ENSMUSG00000022708.10|zinc finger and BTB domain containing 20 	ENSMUST00000114694.2|Zbtb20|ENSMUSG00000022708.10|zinc finger and BTB domain containing 20
mm10_v2_chr2_+_71528657_71528683	5.91316	Hoxa6	ENSMUST00000126400.1|Dlx1|ENSMUSG00000041911.3|distal-less homeobox 1
mm10_v2_chr5_-_123141067_123141094	3.9496	Hoxa6	ENSMUST00000162697.1|AI480526|ENSMUSG00000090086.1|expressed sequence AI480526 	ENSMUST00000160321.1|AI480526|ENSMUSG00000090086.1|expressed sequence AI480526 	ENSMUST00000159637.1|AI480526|ENSMUSG00000090086.1|expressed sequence AI480526
mm10_v2_chr1_-_165934900_165935036	3.88463	Hoxa6	ENSMUST00000069609.5|Pou2f1|ENSMUSG00000026565.12|POU domain, class 2, transcription factor 1 	ENSMUST00000111427.2|Pou2f1|ENSMUSG00000026565.12|POU domain, class 2, transcription factor 1 	ENSMUST00000111426.4|Pou2f1|ENSMUSG00000026565.12|POU domain, class 2, transcription factor 1
mm10_v2_chr8_-_84773381_84773427	3.53429	Hoxa6	ENSMUST00000109764.1|Nfix|ENSMUSG00000001911.10|nuclear factor I/X
mm10_v2_chr5_+_117841839_117841857	3.50997	Hoxa6	ENSMUST00000142742.2|Nos1|ENSMUSG00000029361.12|nitric oxide synthase 1, neuronal
mm10_v2_chr13_-_84064772_84064808	3.42328	Hoxa6	ENSMUST00000182477.1|Gm17750|ENSMUSG00000098087.1|predicted gene, 17750
mm10_v2_chr1_-_163313661_163313710	3.34982	Hoxa6	ENSMUST00000174397.1|Prrx1|ENSMUSG00000026586.10|paired related homeobox 1 	ENSMUST00000075805.6|Prrx1|ENSMUSG00000026586.10|paired related homeobox 1 	ENSMUST00000027878.7|Prrx1|ENSMUSG00000026586.10|paired related homeobox 1
mm10_v2_chr19_+_26749726_26749877	3.11716	Hoxa6	ENSMUST00000175842.1|Smarca2|ENSMUSG00000024921.10|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2
mm10_v2_chr16_+_7069825_7069846	2.95146	Hoxa6	ENSMUST00000056416.7|Rbfox1|ENSMUSG00000008658.9|RNA binding protein, fox-1 homolog (C. elegans) 1
mm10_v2_chr2_+_70474923_70474923	2.86027	Hoxa6	ENSMUST00000100043.2|Sp5|ENSMUSG00000075304.2|trans-acting transcription factor 5
mm10_v2_chr1_+_177445660_177445821	2.72134	Hoxa6	ENSMUST00000077225.6|Zbtb18|ENSMUSG00000063659.6|zinc finger and BTB domain containing 18
mm10_v2_chr15_-_8710734_8710764	2.71219	Hoxa6	ENSMUST00000005493.7|Slc1a3|ENSMUSG00000005360.8|solute carrier family 1 (glial high affinity glutamate transporter), member 3
mm10_v2_chr7_-_109170308_109170308	2.5979	Hoxa6	ENSMUST00000036992.7|Lmo1|ENSMUSG00000036111.7|LIM domain only 1
mm10_v2_chr10_+_97479470_97479500	2.53348	Hoxa6	ENSMUST00000105287.3|Dcn|ENSMUSG00000019929.9|decorin
mm10_v2_chr9_-_42399709_42399727	2.36558	Hoxa6	ENSMUST00000160940.1|Tecta|ENSMUSG00000037705.7|tectorin alpha
mm10_v2_chr16_+_43247278_43247309	2.35231	Hoxa6	ENSMUST00000114691.1|Zbtb20|ENSMUSG00000022708.10|zinc finger and BTB domain containing 20 	ENSMUST00000079441.6|Zbtb20|ENSMUSG00000022708.10|zinc finger and BTB domain containing 20
mm10_v2_chr9_-_42399915_42399929	2.35021	Hoxa6	ENSMUST00000042190.7|Tecta|ENSMUSG00000037705.7|tectorin alpha
mm10_v2_chr13_-_97747373_97747384	2.33761	Hoxa6	ENSMUST00000123535.1|5330416C01Rik|ENSMUSG00000054944.7|RIKEN cDNA 5330416C01 gene
mm10_v2_chr14_-_118052235_118052253	2.26643	Hoxa6	ENSMUST00000022725.2|Dct|ENSMUSG00000022129.3|dopachrome tautomerase
mm10_v2_chr15_+_18818895_18818947	2.21885	Hoxa6	ENSMUST00000166873.2|Cdh10|ENSMUSG00000022321.9|cadherin 10
mm10_v2_chr6_+_80018877_80018945	2.12701	Hoxa6	ENSMUST00000147663.1|Lrrtm4|ENSMUSG00000052581.7|leucine rich repeat transmembrane neuronal 4 	ENSMUST00000128718.1|Lrrtm4|ENSMUSG00000052581.7|leucine rich repeat transmembrane neuronal 4 	ENSMUST00000126005.1|Lrrtm4|ENSMUSG00000052581.7|leucine rich repeat transmembrane neuronal 4 	ENSMUST00000133918.1|Lrrtm4|ENSMUSG00000052581.7|leucine rich repeat transmembrane neuronal 4
mm10_v2_chr2_-_33942111_33942151	2.11503	Hoxa6	ENSMUST00000130988.1|Gm13403|ENSMUSG00000085987.1|predicted gene 13403 	ENSMUST00000127936.1|Gm13403|ENSMUSG00000085987.1|predicted gene 13403 	ENSMUST00000134271.1|Gm13403|ENSMUSG00000085987.1|predicted gene 13403
mm10_v2_chr8_-_46294592_46294671	2.08363	Hoxa6	ENSMUST00000058636.7|Helt|ENSMUSG00000047171.7|helt bHLH transcription factor
mm10_v2_chr6_+_15185203_15185244	1.99274	Hoxa6	ENSMUST00000154448.1|Foxp2|ENSMUSG00000029563.10|forkhead box P2
mm10_v2_chr9_-_40346290_40346337	1.98567	Hoxa6	ENSMUST00000121357.1|Gramd1b|ENSMUSG00000040111.8|GRAM domain containing 1B
mm10_v2_chr6_+_80019008_80019048	1.90933	Hoxa6	ENSMUST00000126399.1|Lrrtm4|ENSMUSG00000052581.7|leucine rich repeat transmembrane neuronal 4 	ENSMUST00000136421.1|Lrrtm4|ENSMUSG00000052581.7|leucine rich repeat transmembrane neuronal 4
mm10_v2_chr15_-_8710409_8710498	1.80515	Hoxa6	ENSMUST00000157065.1|Slc1a3|ENSMUSG00000005360.8|solute carrier family 1 (glial high affinity glutamate transporter), member 3
mm10_v2_chr2_-_170194033_170194064	1.75206	Hoxa6	ENSMUST00000180625.1|Gm17619|ENSMUSG00000097514.1|predicted gene, 17619
mm10_v2_chr16_+_43503607_43503642	1.72607	Hoxa6	ENSMUST00000126100.1|Zbtb20|ENSMUSG00000022708.10|zinc finger and BTB domain containing 20 	ENSMUST00000123047.1|Zbtb20|ENSMUSG00000022708.10|zinc finger and BTB domain containing 20 	ENSMUST00000156981.1|Zbtb20|ENSMUSG00000022708.10|zinc finger and BTB domain containing 20
mm10_v2_chr1_+_177444653_177444669	1.72095	Hoxa6	ENSMUST00000094276.3|Zbtb18|ENSMUSG00000063659.6|zinc finger and BTB domain containing 18
mm10_v2_chr5_+_149678224_149678241	1.67605	Hoxa6	ENSMUST00000100404.3|B3galtl|ENSMUSG00000051950.8|beta 1,3-galactosyltransferase-like
mm10_v2_chr19_+_26750939_26750967	1.62316	Hoxa6	ENSMUST00000175953.1|Smarca2|ENSMUSG00000024921.10|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2
mm10_v2_chr13_-_97747399_97747414	1.60038	Hoxa6	ENSMUST00000144993.1|5330416C01Rik|ENSMUSG00000054944.7|RIKEN cDNA 5330416C01 gene
mm10_v2_chr12_-_34528844_34528904	1.58397	Hoxa6	ENSMUST00000110819.2|Hdac9|ENSMUSG00000004698.9|histone deacetylase 9
mm10_v2_chr2_+_116067933_116067975	1.53327	Hoxa6	ENSMUST00000156095.1|G630016G05Rik|ENSMUSG00000086308.1|RIKEN cDNA G630016G05 gene
mm10_v2_chr5_+_13398688_13398726	1.51764	Hoxa6	ENSMUST00000125629.1|Sema3a|ENSMUSG00000028883.11|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A
mm10_v2_chr18_+_69593361_69593450	1.50193	Hoxa6	ENSMUST00000114978.2|Tcf4|ENSMUSG00000053477.9|transcription factor 4 	ENSMUST00000114977.1|Tcf4|ENSMUSG00000053477.9|transcription factor 4
mm10_v2_chr2_-_36104060_36104073	1.47833	Hoxa6	ENSMUST00000112961.3|Lhx6|ENSMUSG00000026890.13|LIM homeobox protein 6 	ENSMUST00000112966.3|Lhx6|ENSMUSG00000026890.13|LIM homeobox protein 6
mm10_v2_chr14_+_28511344_28511405	1.41564	Hoxa6	ENSMUST00000112272.1|Wnt5a|ENSMUSG00000021994.8|wingless-related MMTV integration site 5A
mm10_v2_chr5_+_13399309_13399382	1.41369	Hoxa6	ENSMUST00000030714.7|Sema3a|ENSMUSG00000028883.11|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A 	ENSMUST00000141968.1|Sema3a|ENSMUSG00000028883.11|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A
mm10_v2_chr1_-_166002613_166002678	1.41221	Hoxa6	ENSMUST00000177358.1|Pou2f1|ENSMUSG00000026565.12|POU domain, class 2, transcription factor 1 	ENSMUST00000160908.1|Pou2f1|ENSMUSG00000026565.12|POU domain, class 2, transcription factor 1 	ENSMUST00000027850.8|Pou2f1|ENSMUSG00000026565.12|POU domain, class 2, transcription factor 1 	ENSMUST00000160260.2|Pou2f1|ENSMUSG00000026565.12|POU domain, class 2, transcription factor 1
mm10_v2_chr5_+_118169712_118169748	1.36366	Hoxa6	ENSMUST00000054836.6|Hrk|ENSMUSG00000046607.6|harakiri, BCL2 interacting protein (contains only BH3 domain)
mm10_v2_chr1_+_104768510_104768529	1.34401	Hoxa6	ENSMUST00000062528.8|Cdh20|ENSMUSG00000050840.8|cadherin 20
mm10_v2_chr2_-_116067391_116067444	1.31264	Hoxa6	ENSMUST00000140185.1|2700033N17Rik|ENSMUSG00000086328.1|RIKEN cDNA 2700033N17 gene
mm10_v2_chr17_+_75178797_75178824	1.29105	Hoxa6	ENSMUST00000112516.1|Ltbp1|ENSMUSG00000001870.9|latent transforming growth factor beta binding protein 1 	ENSMUST00000135447.1|Ltbp1|ENSMUSG00000001870.9|latent transforming growth factor beta binding protein 1
mm10_v2_chr11_+_77930800_77931012	1.28969	Hoxa6	ENSMUST00000093995.3|Sez6|ENSMUSG00000000632.7|seizure related gene 6 	ENSMUST00000000646.7|Sez6|ENSMUSG00000000632.7|seizure related gene 6
mm10_v2_chr19_+_26748268_26748474	1.27498	Hoxa6	ENSMUST00000175791.1|Smarca2|ENSMUSG00000024921.10|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 	ENSMUST00000176698.1|Smarca2|ENSMUSG00000024921.10|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 	ENSMUST00000177252.1|Smarca2|ENSMUSG00000024921.10|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 	ENSMUST00000176475.1|Smarca2|ENSMUSG00000024921.10|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 	ENSMUST00000112637.2|Smarca2|ENSMUSG00000024921.10|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2
mm10_v2_chr13_-_103764502_103764505	1.26492	Hoxa6	ENSMUST00000074616.5|Srek1|ENSMUSG00000032621.7|splicing regulatory glutamine/lysine-rich protein 1
mm10_v2_chr5_+_66968416_66968447	1.24192	Hoxa6	ENSMUST00000038188.7|Limch1|ENSMUSG00000037736.12|LIM and calponin homology domains 1
mm10_v2_chr1_-_166002591_166002609	1.22546	Hoxa6	ENSMUST00000111429.4|Pou2f1|ENSMUSG00000026565.12|POU domain, class 2, transcription factor 1 	ENSMUST00000176800.1|Pou2f1|ENSMUSG00000026565.12|POU domain, class 2, transcription factor 1
mm10_v2_chr11_+_116657106_116657117	1.18793	Hoxa6	ENSMUST00000116318.2|Gm11744|ENSMUSG00000075410.6|predicted gene 11744
mm10_v2_chr2_-_63184253_63184292	1.1833	Hoxa6	ENSMUST00000075052.3|Kcnh7|ENSMUSG00000059742.4|potassium voltage-gated channel, subfamily H (eag-related), member 7 	ENSMUST00000112454.1|Kcnh7|ENSMUSG00000059742.4|potassium voltage-gated channel, subfamily H (eag-related), member 7
mm10_v2_chr16_+_43235856_43235880	1.14399	Hoxa6	ENSMUST00000146708.1|Zbtb20|ENSMUSG00000022708.10|zinc finger and BTB domain containing 20
mm10_v2_chr17_+_75178911_75178961	1.13588	Hoxa6	ENSMUST00000112514.1|Ltbp1|ENSMUSG00000001870.9|latent transforming growth factor beta binding protein 1
mm10_v2_chr6_+_17491216_17491242	1.10379	Hoxa6	ENSMUST00000080469.5|Met|ENSMUSG00000009376.9|met proto-oncogene
mm10_v2_chr1_-_87394721_87394734	1.09792	Hoxa6	ENSMUST00000113212.3|Kcnj13|ENSMUSG00000079436.3|potassium inwardly-rectifying channel, subfamily J, member 13
mm10_v2_chr4_-_88033328_88033373	1.09638	Hoxa6	ENSMUST00000078090.5|Mllt3|ENSMUSG00000028496.11|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3
mm10_v2_chr17_-_51810866_51810919	1.06686	Hoxa6	ENSMUST00000176669.1|Satb1|ENSMUSG00000023927.9|special AT-rich sequence binding protein 1
mm10_v2_chr13_+_63014934_63014934	1.03782	Hoxa6	ENSMUST00000091560.4|2010111I01Rik|ENSMUSG00000021458.10|RIKEN cDNA 2010111I01 gene
mm10_v2_chr5_-_123140135_123140289	1.03302	Hoxa6	ENSMUST00000160099.1|AI480526|ENSMUSG00000090086.1|expressed sequence AI480526
mm10_v2_chr2_+_26591423_26591435	1.02594	Hoxa6	ENSMUST00000152988.2|Egfl7|ENSMUSG00000026921.12|EGF-like domain 7 	ENSMUST00000149789.1|Egfl7|ENSMUSG00000026921.12|EGF-like domain 7
mm10_v2_chr5_+_89027959_89027967	0.985147	Hoxa6	ENSMUST00000130041.1|Slc4a4|ENSMUSG00000060961.8|solute carrier family 4 (anion exchanger), member 4
mm10_v2_chr18_-_22850738_22850759	0.943864	Hoxa6	ENSMUST00000092015.4|Nol4|ENSMUSG00000041923.9|nucleolar protein 4 	ENSMUST00000069215.6|Nol4|ENSMUSG00000041923.9|nucleolar protein 4
mm10_v2_chr13_-_83729544_83729584	0.920976	Hoxa6	ENSMUST00000181705.1|Gm26803|ENSMUSG00000097265.1|predicted gene, 26803
mm10_v2_chr8_+_54954728_54954820	0.912082	Hoxa6	ENSMUST00000033915.7|Gpm6a|ENSMUSG00000031517.7|glycoprotein m6a
mm10_v2_chr3_+_18054258_18054325	0.889397	Hoxa6	ENSMUST00000026120.6|Bhlhe22|ENSMUSG00000025128.6|basic helix-loop-helix family, member e22
mm10_v2_chr5_+_66968559_66968577	0.858893	Hoxa6	ENSMUST00000127184.1|Limch1|ENSMUSG00000037736.12|LIM and calponin homology domains 1
mm10_v2_chr16_-_95459245_95459384	0.854934	Hoxa6	ENSMUST00000176345.1|Erg|ENSMUSG00000040732.12|avian erythroblastosis virus E-26 (v-ets) oncogene related 	ENSMUST00000121809.2|Erg|ENSMUSG00000040732.12|avian erythroblastosis virus E-26 (v-ets) oncogene related 	ENSMUST00000118113.1|Erg|ENSMUSG00000040732.12|avian erythroblastosis virus E-26 (v-ets) oncogene related 	ENSMUST00000122199.1|Erg|ENSMUSG00000040732.12|avian erythroblastosis virus E-26 (v-ets) oncogene related
mm10_v2_chr13_-_105054895_105054930	0.837122	Hoxa6	ENSMUST00000063551.5|Rgs7bp|ENSMUSG00000021719.8|regulator of G-protein signalling 7 binding protein
mm10_v2_chr3_+_84952146_84952186	0.808274	Hoxa6	ENSMUST00000029727.7|Fbxw7|ENSMUSG00000028086.8|F-box and WD-40 domain protein 7
mm10_v2_chr6_-_97459279_97459303	0.794922	Hoxa6	ENSMUST00000113359.1|Frmd4b|ENSMUSG00000030064.10|FERM domain containing 4B
mm10_v2_chr3_+_13946368_13946379	0.784932	Hoxa6	ENSMUST00000171075.1|Ralyl|ENSMUSG00000039717.9|RALY RNA binding protein-like 	ENSMUST00000108372.2|Ralyl|ENSMUSG00000039717.9|RALY RNA binding protein-like
mm10_v2_chr16_+_43363855_43363888	0.775757	Hoxa6	ENSMUST00000156367.1|Zbtb20|ENSMUSG00000022708.10|zinc finger and BTB domain containing 20
mm10_v2_chr2_-_63184170_63184195	0.769833	Hoxa6	ENSMUST00000112452.1|Kcnh7|ENSMUSG00000059742.4|potassium voltage-gated channel, subfamily H (eag-related), member 7
mm10_v2_chr19_+_55895508_55895511	0.759262	Hoxa6	ENSMUST00000111646.1|Tcf7l2|ENSMUSG00000024985.12|transcription factor 7 like 2, T cell specific, HMG box
mm10_v2_chr18_-_23041641_23041671	0.757975	Hoxa6	ENSMUST00000097651.3|Nol4|ENSMUSG00000041923.9|nucleolar protein 4
mm10_v2_chr19_-_28911879_28911879	0.75195	Hoxa6	ENSMUST00000179171.1|AC163993.1|ENSMUSG00000095556.1|AC163993.1
mm10_v2_chr3_+_130180882_130180899	0.712865	Hoxa6	ENSMUST00000106353.1|Col25a1|ENSMUSG00000058897.11|collagen, type XXV, alpha 1 	ENSMUST00000080335.4|Col25a1|ENSMUSG00000058897.11|collagen, type XXV, alpha 1
mm10_v2_chr4_-_14621805_14621819	0.698477	Hoxa6	ENSMUST00000042221.7|Slc26a7|ENSMUSG00000040569.7|solute carrier family 26, member 7
mm10_v2_chr19_+_26605106_26605119	0.690581	Hoxa6	ENSMUST00000025862.7|Smarca2|ENSMUSG00000024921.10|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 	ENSMUST00000176030.1|Smarca2|ENSMUSG00000024921.10|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2
mm10_v2_chr2_-_33086366_33086447	0.689989	Hoxa6	ENSMUST00000049618.2|Garnl3|ENSMUSG00000038860.9|GTPase activating RANGAP domain-like 3
mm10_v2_chr13_+_80883403_80883422	0.679848	Hoxa6	ENSMUST00000099356.2|Arrdc3|ENSMUSG00000074794.3|arrestin domain containing 3
mm10_v2_chr2_-_79456750_79456761	0.66058	Hoxa6	ENSMUST00000041099.4|Neurod1|ENSMUSG00000034701.9|neurogenic differentiation 1
mm10_v2_chr11_-_37235882_37235994	0.659244	Hoxa6	ENSMUST00000102801.1|Tenm2|ENSMUSG00000049336.10|teneurin transmembrane protein 2
mm10_v2_chr8_-_67974567_67974596	0.640644	Hoxa6	ENSMUST00000098696.3|Psd3|ENSMUSG00000030465.12|pleckstrin and Sec7 domain containing 3 	ENSMUST00000038959.9|Psd3|ENSMUSG00000030465.12|pleckstrin and Sec7 domain containing 3 	ENSMUST00000093469.4|Psd3|ENSMUSG00000030465.12|pleckstrin and Sec7 domain containing 3
mm10_v2_chr12_+_29528382_29528468	0.630367	Hoxa6	ENSMUST00000049784.9|Myt1l|ENSMUSG00000061911.8|myelin transcription factor 1-like
mm10_v2_chr13_+_83732438_83732566	0.62476	Hoxa6	ENSMUST00000182701.1|C130071C03Rik|ENSMUSG00000050334.6|RIKEN cDNA C130071C03 gene
mm10_v2_chr4_+_11579647_11579674	0.623324	Hoxa6	ENSMUST00000180239.1|Fsbp|ENSMUSG00000094595.1|fibrinogen silencer binding protein
mm10_v2_chr5_+_89028035_89028096	0.611632	Hoxa6	ENSMUST00000113216.2|Slc4a4|ENSMUSG00000060961.8|solute carrier family 4 (anion exchanger), member 4 	ENSMUST00000134303.1|Slc4a4|ENSMUSG00000060961.8|solute carrier family 4 (anion exchanger), member 4
mm10_v2_chr4_-_82705735_82705754	0.610848	Hoxa6	ENSMUST00000155821.1|Nfib|ENSMUSG00000008575.11|nuclear factor I/B
mm10_v2_chr13_+_42680565_42680623	0.591116	Hoxa6	ENSMUST00000128646.1|Phactr1|ENSMUSG00000054728.10|phosphatase and actin regulator 1
mm10_v2_chr13_-_28953690_28953713	0.576762	Hoxa6	ENSMUST00000067230.5|Sox4|ENSMUSG00000076431.4|SRY-box containing gene 4
mm10_v2_chr9_-_32541589_32541602	0.572478	Hoxa6	ENSMUST00000016231.7|Fli1|ENSMUSG00000016087.7|Friend leukemia integration 1
mm10_v2_chr3_-_146770603_146770781	0.567229	Hoxa6	ENSMUST00000106138.1|Prkacb|ENSMUSG00000005034.9|protein kinase, cAMP dependent, catalytic, beta
mm10_v2_chr6_-_138422898_138422999	0.55544	Hoxa6	ENSMUST00000161450.1|Lmo3|ENSMUSG00000030226.6|LIM domain only 3 	ENSMUST00000163024.1|Lmo3|ENSMUSG00000030226.6|LIM domain only 3 	ENSMUST00000162185.1|Lmo3|ENSMUSG00000030226.6|LIM domain only 3
mm10_v2_chr7_+_91090728_91090751	0.542714	Hoxa6	ENSMUST00000074273.3|Dlg2|ENSMUSG00000052572.9|discs, large homolog 2 (Drosophila)
mm10_v2_chr2_+_132847719_132847743	0.542163	Hoxa6	ENSMUST00000124836.1|Crls1|ENSMUSG00000027357.10|cardiolipin synthase 1 	ENSMUST00000154160.1|Crls1|ENSMUSG00000027357.10|cardiolipin synthase 1
mm10_v2_chr2_+_79707780_79707927	0.536144	Hoxa6	ENSMUST00000090760.2|Ppp1r1c|ENSMUSG00000034683.6|protein phosphatase 1, regulatory (inhibitor) subunit 1C 	ENSMUST00000040863.4|Ppp1r1c|ENSMUSG00000034683.6|protein phosphatase 1, regulatory (inhibitor) subunit 1C 	ENSMUST00000111780.2|Ppp1r1c|ENSMUSG00000034683.6|protein phosphatase 1, regulatory (inhibitor) subunit 1C
mm10_v2_chr8_-_105568298_105568298	0.523606	Hoxa6	ENSMUST00000005849.5|Agrp|ENSMUSG00000005705.5|agouti related protein
mm10_v2_chr7_+_91090697_91090727	0.523525	Hoxa6	ENSMUST00000107196.2|Dlg2|ENSMUSG00000052572.9|discs, large homolog 2 (Drosophila)
mm10_v2_chr19_-_59170978_59170978	0.518394	Hoxa6	ENSMUST00000172821.2|Vax1|ENSMUSG00000006270.6|ventral anterior homeobox containing gene 1
mm10_v2_chr11_-_42182924_42182935	0.515851	Hoxa6	ENSMUST00000020707.5|Gabra1|ENSMUSG00000010803.6|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 1 	ENSMUST00000132971.1|Gabra1|ENSMUSG00000010803.6|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 1
mm10_v2_chr3_-_146770218_146770261	0.51578	Hoxa6	ENSMUST00000106137.1|Prkacb|ENSMUSG00000005034.9|protein kinase, cAMP dependent, catalytic, beta
mm10_v2_chr14_-_46390576_46390669	0.502379	Hoxa6	ENSMUST00000074077.5|Bmp4|ENSMUSG00000021835.8|bone morphogenetic protein 4
mm10_v2_chr5_+_42067960_42067960	0.501914	Hoxa6	ENSMUST00000087332.4|Gm16223|ENSMUSG00000067285.4|predicted gene 16223
mm10_v2_chr11_-_33203588_33203599	0.501513	Hoxa6	ENSMUST00000037746.6|Tlx3|ENSMUSG00000040610.6|T cell leukemia, homeobox 3
mm10_v2_chrM_+_7005_7022	0.497326	Hoxa6	ENSMUST00000082405.1|mt-Co2|ENSMUSG00000064354.1|mitochondrially encoded cytochrome c oxidase II
mm10_v2_chrM_+_8600_8616	0.496145	Hoxa6	ENSMUST00000082409.1|mt-Co3|ENSMUSG00000064358.1|mitochondrially encoded cytochrome c oxidase III
mm10_v2_chr9_+_120929216_120929251	0.483018	Hoxa6	ENSMUST00000130466.1|Ctnnb1|ENSMUSG00000006932.10|catenin (cadherin associated protein), beta 1
mm10_v2_chr14_-_46390501_46390550	0.472928	Hoxa6	ENSMUST00000100676.2|Bmp4|ENSMUSG00000021835.8|bone morphogenetic protein 4
mm10_v2_chr16_-_64786321_64786321	0.463214	Hoxa6	ENSMUST00000052588.4|Zfp654|ENSMUSG00000047141.4|zinc finger protein 654
mm10_v2_chr16_+_43364145_43364204	0.449668	Hoxa6	ENSMUST00000148775.1|Zbtb20|ENSMUSG00000022708.10|zinc finger and BTB domain containing 20
mm10_v2_chr1_+_132191436_132191436	0.446729	Hoxa6	ENSMUST00000112357.2|Lemd1|ENSMUSG00000079330.2|LEM domain containing 1
mm10_v2_chrM_+_10167_10167	0.444393	Hoxa6	ENSMUST00000082414.1|mt-Nd4|ENSMUSG00000064363.1|mitochondrially encoded NADH dehydrogenase 4
mm10_v2_chr7_-_73541738_73541758	0.438603	Hoxa6	ENSMUST00000169922.2|Chd2|ENSMUSG00000078671.4|chromodomain helicase DNA binding protein 2
mm10_v2_chr6_-_55681257_55681271	0.428735	Hoxa6	ENSMUST00000044767.8|Neurod6|ENSMUSG00000037984.8|neurogenic differentiation 6
mm10_v2_chr4_-_42168603_42168603	0.426489	Hoxa6	ENSMUST00000098121.3|Gm13305|ENSMUSG00000073876.3|predicted gene 13305
mm10_v2_chr2_-_7395968_7396011	0.426458	Hoxa6	ENSMUST00000002176.6|Celf2|ENSMUSG00000002107.12|CUGBP, Elav-like family member 2
mm10_v2_chr8_-_67818284_67818320	0.412069	Hoxa6	ENSMUST00000120071.1|Psd3|ENSMUSG00000030465.12|pleckstrin and Sec7 domain containing 3
mm10_v2_chr3_-_26133734_26133734	0.407983	Hoxa6	ENSMUST00000108308.3|Nlgn1|ENSMUSG00000063887.7|neuroligin 1 	ENSMUST00000075054.4|Nlgn1|ENSMUSG00000063887.7|neuroligin 1
mm10_v2_chr9_+_61372359_61372383	0.397729	Hoxa6	ENSMUST00000178113.1|Tle3|ENSMUSG00000032280.10|transducin-like enhancer of split 3, homolog of Drosophila E(spl) 	ENSMUST00000159386.1|Tle3|ENSMUSG00000032280.10|transducin-like enhancer of split 3, homolog of Drosophila E(spl)
mm10_v2_chr15_-_79285502_79285537	0.396532	Hoxa6	ENSMUST00000165408.1|Baiap2l2|ENSMUSG00000018126.9|BAI1-associated protein 2-like 2
mm10_v2_chr3_+_68572245_68572392	0.383467	Hoxa6	ENSMUST00000170788.2|Schip1|ENSMUSG00000027777.9|schwannomin interacting protein 1
mm10_v2_chr9_-_112187898_112187938	0.374034	Hoxa6	ENSMUST00000178410.1|Arpp21|ENSMUSG00000032503.11|cyclic AMP-regulated phosphoprotein, 21 	ENSMUST00000172380.3|Arpp21|ENSMUSG00000032503.11|cyclic AMP-regulated phosphoprotein, 21
mm10_v2_chr13_-_18382041_18382041	0.372514	Hoxa6	ENSMUST00000139064.2|Pou6f2|ENSMUSG00000009734.11|POU domain, class 6, transcription factor 2 	ENSMUST00000175703.2|Pou6f2|ENSMUSG00000009734.11|POU domain, class 6, transcription factor 2
mm10_v2_chrM_+_2743_2761	0.371528	Hoxa6	ENSMUST00000082392.1|mt-Nd1|ENSMUSG00000064341.1|mitochondrially encoded NADH dehydrogenase 1
mm10_v2_chr7_-_84679346_84679401	0.331956	Hoxa6	ENSMUST00000069537.2|Zfand6|ENSMUSG00000030629.8|zinc finger, AN1-type domain 6 	ENSMUST00000178385.1|Zfand6|ENSMUSG00000030629.8|zinc finger, AN1-type domain 6
mm10_v2_chr7_-_37772868_37772891	0.33179	Hoxa6	ENSMUST00000176205.1|Zfp536|ENSMUSG00000043456.10|zinc finger protein 536
mm10_v2_chr2_-_58052832_58052870	0.321077	Hoxa6	ENSMUST00000090940.5|Ermn|ENSMUSG00000026830.9|ermin, ERM-like protein
mm10_v2_chrX_-_59166080_59166164	0.320858	Hoxa6	ENSMUST00000119306.1|Fgf13|ENSMUSG00000031137.11|fibroblast growth factor 13
mm10_v2_chr3_-_59220150_59220259	0.297268	Hoxa6	ENSMUST00000170388.1|P2ry12|ENSMUSG00000036353.7|purinergic receptor P2Y, G-protein coupled 12
mm10_v2_chr18_+_54990280_54990315	0.292895	Hoxa6	ENSMUST00000181538.1|Gm4221|ENSMUSG00000096948.1|predicted gene 4221
mm10_v2_chr17_+_70561739_70561787	0.29218	Hoxa6	ENSMUST00000097288.2|Dlgap1|ENSMUSG00000003279.10|discs, large (Drosophila) homolog-associated protein 1
mm10_v2_chr4_-_129378116_129378116	0.29109	Hoxa6	ENSMUST00000030610.2|Zbtb8a|ENSMUSG00000028807.2|zinc finger and BTB domain containing 8a
mm10_v2_chr5_-_142817387_142817420	0.280349	Hoxa6	ENSMUST00000036253.6|Tnrc18|ENSMUSG00000039477.10|trinucleotide repeat containing 18
mm10_v2_chr6_-_138421379_138421452	0.271708	Hoxa6	ENSMUST00000163065.1|Lmo3|ENSMUSG00000030226.6|LIM domain only 3
mm10_v2_chr2_-_45112890_45113010	0.268485	Hoxa6	ENSMUST00000076836.6|Zeb2|ENSMUSG00000026872.10|zinc finger E-box binding homeobox 2
mm10_v2_chrM_+_5319_5333	0.268	Hoxa6	ENSMUST00000082402.1|mt-Co1|ENSMUSG00000064351.1|mitochondrially encoded cytochrome c oxidase I
mm10_v2_chr19_+_55894508_55894534	0.260142	Hoxa6	ENSMUST00000142291.1|Tcf7l2|ENSMUSG00000024985.12|transcription factor 7 like 2, T cell specific, HMG box
mm10_v2_chr12_-_73047179_73047179	0.251469	Hoxa6	ENSMUST00000050029.7|Six1|ENSMUSG00000051367.8|sine oculis-related homeobox 1
mm10_v2_chr1_+_81077204_81077252	0.249057	Hoxa6	ENSMUST00000123720.1|Nyap2|ENSMUSG00000054976.8|neuronal tyrosine-phophorylated phosphoinositide 3-kinase adaptor 2
mm10_v2_chr10_+_87859062_87859094	0.239674	Hoxa6	ENSMUST00000095360.4|Igf1|ENSMUSG00000020053.12|insulin-like growth factor 1
mm10_v2_chr18_-_54990124_54990180	0.23927	Hoxa6	ENSMUST00000064763.5|Zfp608|ENSMUSG00000052713.8|zinc finger protein 608
mm10_v2_chr1_+_81077274_81077327	0.231332	Hoxa6	ENSMUST00000068275.5|Nyap2|ENSMUSG00000054976.8|neuronal tyrosine-phophorylated phosphoinositide 3-kinase adaptor 2 	ENSMUST00000113494.2|Nyap2|ENSMUSG00000054976.8|neuronal tyrosine-phophorylated phosphoinositide 3-kinase adaptor 2
mm10_v2_chr4_-_120815703_120815761	0.228692	Hoxa6	ENSMUST00000120779.1|Nfyc|ENSMUSG00000032897.11|nuclear transcription factor-Y gamma
mm10_v2_chr11_+_78826575_78826618	0.226148	Hoxa6	ENSMUST00000147875.2|Lyrm9|ENSMUSG00000072640.5|LYR motif containing 9 	ENSMUST00000141321.1|Lyrm9|ENSMUSG00000072640.5|LYR motif containing 9
mm10_v2_chr5_+_34989473_34989549	0.225436	Hoxa6	ENSMUST00000114284.1|Rgs12|ENSMUSG00000029101.8|regulator of G-protein signaling 12 	ENSMUST00000114285.1|Rgs12|ENSMUSG00000029101.8|regulator of G-protein signaling 12
mm10_v2_chr14_-_108914237_108914257	0.22332	Hoxa6	ENSMUST00000100322.2|Slitrk1|ENSMUSG00000075478.2|SLIT and NTRK-like family, member 1
mm10_v2_chr19_-_19001099_19001119	0.217624	Hoxa6	ENSMUST00000040153.8|Rorb|ENSMUSG00000036192.9|RAR-related orphan receptor beta 	ENSMUST00000112828.1|Rorb|ENSMUSG00000036192.9|RAR-related orphan receptor beta
mm10_v2_chr3_+_41563356_41563392	0.216382	Hoxa6	ENSMUST00000163764.1|Phf17|ENSMUSG00000025764.8|PHD finger protein 17
mm10_v2_chr2_-_168206875_168206922	0.214497	Hoxa6	ENSMUST00000057793.4|Adnp|ENSMUSG00000051149.9|activity-dependent neuroprotective protein
mm10_v2_chrM_+_7759_7927	0.213066	Hoxa6	ENSMUST00000082407.1|mt-Atp8|ENSMUSG00000064356.3|mitochondrially encoded ATP synthase 8 	ENSMUST00000082408.1|mt-Atp6|ENSMUSG00000064357.1|mitochondrially encoded ATP synthase 6
mm10_v2_chr13_+_42681513_42681564	0.211711	Hoxa6	ENSMUST00000149235.1|Phactr1|ENSMUSG00000054728.10|phosphatase and actin regulator 1
mm10_v2_chr19_-_53371766_53371766	0.208672	Hoxa6	ENSMUST00000086887.1|Gm10197|ENSMUSG00000067085.1|predicted gene 10197
mm10_v2_chr5_-_23616528_23616597	0.200143	Hoxa6	ENSMUST00000088392.4|Srpk2|ENSMUSG00000062604.7|serine/arginine-rich protein specific kinase 2
mm10_v2_chr12_+_21417872_21417911	0.197085	Hoxa6	ENSMUST00000180671.1|Gm4419|ENSMUSG00000097055.1|predicted gene 4419
mm10_v2_chr10_-_13388753_13388774	0.19452	Hoxa6	ENSMUST00000105546.1|Phactr2|ENSMUSG00000062866.9|phosphatase and actin regulator 2
mm10_v2_chr5_-_122988533_122988705	0.182667	Hoxa6	ENSMUST00000086200.4|Kdm2b|ENSMUSG00000029475.11|lysine (K)-specific demethylase 2B 	ENSMUST00000156474.1|Kdm2b|ENSMUSG00000029475.11|lysine (K)-specific demethylase 2B
mm10_v2_chr11_+_94044331_94044365	0.177759	Hoxa6	ENSMUST00000024979.8|Spag9|ENSMUSG00000020859.10|sperm associated antigen 9
mm10_v2_chr2_-_168207063_168207142	0.174459	Hoxa6	ENSMUST00000088001.5|Adnp|ENSMUSG00000051149.9|activity-dependent neuroprotective protein
mm10_v2_chr15_+_79690869_79690905	0.173848	Hoxa6	ENSMUST00000046463.8|Gtpbp1|ENSMUSG00000042535.8|GTP binding protein 1
mm10_v2_chr7_-_113347273_113347293	0.171232	Hoxa6	ENSMUST00000117577.1|Btbd10|ENSMUSG00000038187.8|BTB (POZ) domain containing 10
mm10_v2_chr17_-_58991343_58991375	0.167218	Hoxa6	ENSMUST00000025064.7|2610034M16Rik|ENSMUSG00000024227.8|RIKEN cDNA 2610034M16 gene
mm10_v2_chr10_-_13388830_13388970	0.159108	Hoxa6	ENSMUST00000079698.5|Phactr2|ENSMUSG00000062866.9|phosphatase and actin regulator 2
mm10_v2_chr3_-_131344892_131344940	0.151607	Hoxa6	ENSMUST00000090246.4|Sgms2|ENSMUSG00000050931.6|sphingomyelin synthase 2 	ENSMUST00000126569.1|Sgms2|ENSMUSG00000050931.6|sphingomyelin synthase 2
mm10_v2_chr5_-_122989086_122989111	0.136924	Hoxa6	ENSMUST00000046073.9|Kdm2b|ENSMUSG00000029475.11|lysine (K)-specific demethylase 2B
mm10_v2_chr5_-_62765618_62765656	0.136089	Hoxa6	ENSMUST00000159470.1|Arap2|ENSMUSG00000037999.9|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2
mm10_v2_chr11_+_94044241_94044273	0.13438	Hoxa6	ENSMUST00000103168.3|Spag9|ENSMUSG00000020859.10|sperm associated antigen 9
mm10_v2_chr10_-_42583628_42583639	0.131283	Hoxa6	ENSMUST00000019938.4|Nr2e1|ENSMUSG00000019803.5|nuclear receptor subfamily 2, group E, member 1
mm10_v2_chr8_-_47352348_47352367	0.129282	Hoxa6	ENSMUST00000110367.2|Stox2|ENSMUSG00000038143.8|storkhead box 2
mm10_v2_chr11_+_94044194_94044238	0.117474	Hoxa6	ENSMUST00000092777.4|Spag9|ENSMUSG00000020859.10|sperm associated antigen 9 	ENSMUST00000075695.6|Spag9|ENSMUSG00000020859.10|sperm associated antigen 9
mm10_v2_chr2_-_6884975_6884996	0.11454	Hoxa6	ENSMUST00000114924.3|Celf2|ENSMUSG00000002107.12|CUGBP, Elav-like family member 2 	ENSMUST00000170438.1|Celf2|ENSMUSG00000002107.12|CUGBP, Elav-like family member 2 	ENSMUST00000114934.4|Celf2|ENSMUSG00000002107.12|CUGBP, Elav-like family member 2
mm10_v2_chr9_+_44398176_44398176	0.106636	Hoxa6	ENSMUST00000165839.1|Slc37a4|ENSMUSG00000032114.8|solute carrier family 37 (glucose-6-phosphate transporter), member 4
mm10_v2_chr13_+_16014457_16014475	0.104071	Hoxa6	ENSMUST00000164993.1|Inhba|ENSMUSG00000041324.7|inhibin beta-A
mm10_v2_chr3_-_37125943_37125969	0.103603	Hoxa6	ENSMUST00000029275.5|Il2|ENSMUSG00000027720.7|interleukin 2
mm10_v2_chr9_+_46998931_46998931	0.103518	Hoxa6	ENSMUST00000178065.1|Gm4791|ENSMUSG00000094893.1|predicted gene 4791
mm10_v2_chr16_+_19028232_19028232	0.103339	Hoxa6	ENSMUST00000074116.4|Gm10088|ENSMUSG00000060811.4|predicted gene 10088
mm10_v2_chr4_-_91399984_91400007	0.103152	Hoxa6	ENSMUST00000102799.3|Elavl2|ENSMUSG00000008489.12|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)
mm10_v2_chr10_+_99263224_99263240	0.101415	Hoxa6	ENSMUST00000020118.4|Dusp6|ENSMUSG00000019960.7|dual specificity phosphatase 6
mm10_v2_chr17_-_90088343_90088373	0.0949696	Hoxa6	ENSMUST00000173917.1|Nrxn1|ENSMUSG00000024109.12|neurexin I
mm10_v2_chr10_-_116549101_116549163	0.0916505	Hoxa6	ENSMUST00000164088.1|Cnot2|ENSMUSG00000020166.8|CCR4-NOT transcription complex, subunit 2
mm10_v2_chr11_+_31872100_31872226	0.0872853	Hoxa6	ENSMUST00000020543.6|Cpeb4|ENSMUSG00000020300.8|cytoplasmic polyadenylation element binding protein 4 	ENSMUST00000109412.2|Cpeb4|ENSMUSG00000020300.8|cytoplasmic polyadenylation element binding protein 4
mm10_v2_chr7_+_49910112_49910146	0.0852514	Hoxa6	ENSMUST00000056442.5|Slc6a5|ENSMUSG00000039728.8|solute carrier family 6 (neurotransmitter transporter, glycine), member 5
mm10_v2_chr1_-_30863256_30863256	0.0818383	Hoxa6	ENSMUST00000088310.3|Phf3|ENSMUSG00000048874.9|PHD finger protein 3
mm10_v2_chr13_-_91388079_91388090	0.0674316	Hoxa6	ENSMUST00000181054.1|A830009L08Rik|ENSMUSG00000097182.1|RIKEN cDNA A830009L08 gene
mm10_v2_chr16_-_92400067_92400083	0.0669122	Hoxa6	ENSMUST00000023672.8|Rcan1|ENSMUSG00000022951.9|regulator of calcineurin 1
mm10_v2_chr10_+_42583787_42583838	0.066543	Hoxa6	ENSMUST00000105497.1|Ostm1|ENSMUSG00000038280.6|osteopetrosis associated transmembrane protein 1 	ENSMUST00000144806.1|Ostm1|ENSMUSG00000038280.6|osteopetrosis associated transmembrane protein 1
mm10_v2_chr6_+_34709442_34709497	0.0540941	Hoxa6	ENSMUST00000115021.1|Cald1|ENSMUSG00000029761.10|caldesmon 1
mm10_v2_chr12_-_56613270_56613291	0.0535909	Hoxa6	ENSMUST00000072631.5|Nkx2-9|ENSMUSG00000058669.7|NK2 homeobox 9
mm10_v2_chr10_+_87859255_87859266	0.05042	Hoxa6	ENSMUST00000105300.2|Igf1|ENSMUSG00000020053.12|insulin-like growth factor 1
mm10_v2_chr4_-_92191749_92191749	0.0473751	Hoxa6	ENSMUST00000123179.1|Gm12666|ENSMUSG00000066107.6|predicted gene 12666
mm10_v2_chr3_+_118430299_118430368	0.0420647	Hoxa6	ENSMUST00000180774.1|Gm26871|ENSMUSG00000097311.1|predicted gene, 26871
mm10_v2_chr4_-_14621494_14621506	0.0418101	Hoxa6	ENSMUST00000149633.1|Slc26a7|ENSMUSG00000040569.7|solute carrier family 26, member 7
mm10_v2_chr4_+_5724304_5724357	0.0394179	Hoxa6	ENSMUST00000108380.1|Fam110b|ENSMUSG00000049119.8|family with sequence similarity 110, member B
mm10_v2_chr7_+_131542867_131542867	0.0363623	Hoxa6	ENSMUST00000046093.5|Hmx3|ENSMUSG00000040148.5|H6 homeobox 3
mm10_v2_chr10_+_42860348_42860377	0.033399	Hoxa6	ENSMUST00000063063.7|Scml4|ENSMUSG00000044770.8|sex comb on midleg-like 4 (Drosophila)
mm10_v2_chr8_-_67818218_67818269	0.0284192	Hoxa6	ENSMUST00000059374.4|Psd3|ENSMUSG00000030465.12|pleckstrin and Sec7 domain containing 3
mm10_v2_chr6_-_13838432_13838454	0.0213357	Hoxa6	ENSMUST00000115492.1|Gpr85|ENSMUSG00000048216.7|G protein-coupled receptor 85
mm10_v2_chr10_-_20725023_20725078	0.0209839	Hoxa6	ENSMUST00000020165.7|Pde7b|ENSMUSG00000019990.8|phosphodiesterase 7B
mm10_v2_chr1_-_132707304_132707326	0.0200448	Hoxa6	ENSMUST00000043189.7|Nfasc|ENSMUSG00000026442.8|neurofascin
mm10_v2_chr6_-_136171722_136171849	0.0185112	Hoxa6	ENSMUST00000053880.6|Grin2b|ENSMUSG00000030209.8|glutamate receptor, ionotropic, NMDA2B (epsilon 2)
mm10_v2_chr10_+_18469958_18469981	0.0153779	Hoxa6	ENSMUST00000162891.1|Nhsl1|ENSMUSG00000039835.9|NHS-like 1 	ENSMUST00000100054.3|Nhsl1|ENSMUSG00000039835.9|NHS-like 1
