mm10_v2_chr7_-_142661858_142661880	1.27102	Hoxa9_Hoxb9	ENSMUST00000145896.2|Igf2|ENSMUSG00000048583.10|insulin-like growth factor 2
mm10_v2_chr19_-_57197377_57197417	0.858327	Hoxa9_Hoxb9	ENSMUST00000111546.1|Ablim1|ENSMUSG00000025085.10|actin-binding LIM protein 1
mm10_v2_chr19_-_57197435_57197460	0.847976	Hoxa9_Hoxb9	ENSMUST00000111550.1|Ablim1|ENSMUSG00000025085.10|actin-binding LIM protein 1
mm10_v2_chr15_+_25773985_25774042	0.830414	Hoxa9_Hoxb9	ENSMUST00000125667.1|Myo10|ENSMUSG00000022272.11|myosin X
mm10_v2_chr16_-_52454074_52454074	0.650085	Hoxa9_Hoxb9	ENSMUST00000023312.7|Alcam|ENSMUSG00000022636.7|activated leukocyte cell adhesion molecule
mm10_v2_chr6_+_49822710_49822727	0.617135	Hoxa9_Hoxb9	ENSMUST00000031843.6|Npy|ENSMUSG00000029819.6|neuropeptide Y
mm10_v2_chr15_+_85510812_85510812	0.495781	Hoxa9_Hoxb9	ENSMUST00000079690.2|Gm4825|ENSMUSG00000063548.2|predicted pseudogene 4825
mm10_v2_chr11_-_79504078_79504089	0.471499	Hoxa9_Hoxb9	ENSMUST00000164465.2|Omg|ENSMUSG00000049612.10|oligodendrocyte myelin glycoprotein
mm10_v2_chr2_-_33086366_33086447	0.4543	Hoxa9_Hoxb9	ENSMUST00000049618.2|Garnl3|ENSMUSG00000038860.9|GTPase activating RANGAP domain-like 3
mm10_v2_chr6_-_143947092_143947111	0.430835	Hoxa9_Hoxb9	ENSMUST00000144289.1|Sox5|ENSMUSG00000041540.10|SRY-box containing gene 5 	ENSMUST00000111748.1|Sox5|ENSMUSG00000041540.10|SRY-box containing gene 5
mm10_v2_chr19_-_57197496_57197536	0.425287	Hoxa9_Hoxb9	ENSMUST00000111544.1|Ablim1|ENSMUSG00000025085.10|actin-binding LIM protein 1
mm10_v2_chr2_-_31845925_31846005	0.418963	Hoxa9_Hoxb9	ENSMUST00000028188.7|Fibcd1|ENSMUSG00000026841.7|fibrinogen C domain containing 1
mm10_v2_chr6_-_143947061_143947088	0.418815	Hoxa9_Hoxb9	ENSMUST00000124233.1|Sox5|ENSMUSG00000041540.10|SRY-box containing gene 5
mm10_v2_chr2_-_33087169_33087253	0.404009	Hoxa9_Hoxb9	ENSMUST00000102810.3|Garnl3|ENSMUSG00000038860.9|GTPase activating RANGAP domain-like 3
mm10_v2_chr1_+_194619815_194619833	0.356603	Hoxa9_Hoxb9	ENSMUST00000027952.5|Plxna2|ENSMUSG00000026640.6|plexin A2
mm10_v2_chr7_-_101870778_101870788	0.346919	Hoxa9_Hoxb9	ENSMUST00000001882.4|Folr1|ENSMUSG00000001827.5|folate receptor 1 (adult) 	ENSMUST00000126204.1|Folr1|ENSMUSG00000001827.5|folate receptor 1 (adult) 	ENSMUST00000155311.1|Folr1|ENSMUSG00000001827.5|folate receptor 1 (adult) 	ENSMUST00000106983.1|Folr1|ENSMUSG00000001827.5|folate receptor 1 (adult) 	ENSMUST00000123630.1|Folr1|ENSMUSG00000001827.5|folate receptor 1 (adult)
mm10_v2_chr19_-_57197556_57197631	0.337927	Hoxa9_Hoxb9	ENSMUST00000099294.2|Ablim1|ENSMUSG00000025085.10|actin-binding LIM protein 1
mm10_v2_chrX_+_159840463_159840481	0.336823	Hoxa9_Hoxb9	ENSMUST00000112451.1|Sh3kbp1|ENSMUSG00000040990.11|SH3-domain kinase binding protein 1 	ENSMUST00000112453.2|Sh3kbp1|ENSMUSG00000040990.11|SH3-domain kinase binding protein 1
mm10_v2_chr13_+_16014457_16014475	0.301617	Hoxa9_Hoxb9	ENSMUST00000164993.1|Inhba|ENSMUSG00000041324.7|inhibin beta-A
mm10_v2_chr3_+_98280427_98280444	0.30028	Hoxa9_Hoxb9	ENSMUST00000090746.2|Hmgcs2|ENSMUSG00000027875.6|3-hydroxy-3-methylglutaryl-Coenzyme A synthase 2 	ENSMUST00000120541.1|Hmgcs2|ENSMUSG00000027875.6|3-hydroxy-3-methylglutaryl-Coenzyme A synthase 2
mm10_v2_chr18_+_37400845_37400886	0.296587	Hoxa9_Hoxb9	ENSMUST00000057228.1|Pcdhb9|ENSMUSG00000051242.1|protocadherin beta 9
mm10_v2_chr4_+_144893127_144893151	0.294109	Hoxa9_Hoxb9	ENSMUST00000142808.1|Dhrs3|ENSMUSG00000066026.8|dehydrogenase/reductase (SDR family) member 3
mm10_v2_chr16_+_10812915_10812915	0.290493	Hoxa9_Hoxb9	ENSMUST00000115822.1|Gm11172|ENSMUSG00000079740.1|predicted gene 11172
mm10_v2_chr5_-_73191848_73191922	0.287454	Hoxa9_Hoxb9	ENSMUST00000176910.1|Fryl|ENSMUSG00000070733.7|furry homolog-like (Drosophila)
mm10_v2_chr9_+_75311395_75311395	0.266403	Hoxa9_Hoxb9	ENSMUST00000076889.6|Gnb5|ENSMUSG00000032192.8|guanine nucleotide binding protein (G protein), beta 5
mm10_v2_chr1_-_163289214_163289235	0.264733	Hoxa9_Hoxb9	ENSMUST00000183691.1|Prrx1|ENSMUSG00000026586.10|paired related homeobox 1
mm10_v2_chr8_+_93810832_93810843	0.256552	Hoxa9_Hoxb9	ENSMUST00000034198.8|Gnao1|ENSMUSG00000031748.9|guanine nucleotide binding protein, alpha O 	ENSMUST00000125716.1|Gnao1|ENSMUSG00000031748.9|guanine nucleotide binding protein, alpha O
mm10_v2_chr2_-_45112890_45113010	0.253549	Hoxa9_Hoxb9	ENSMUST00000076836.6|Zeb2|ENSMUSG00000026872.10|zinc finger E-box binding homeobox 2
mm10_v2_chr17_-_6621267_6621267	0.247461	Hoxa9_Hoxb9	ENSMUST00000115772.3|Tmem181c-ps|ENSMUSG00000093880.1|transmembrane protein 181C, pseudogene
mm10_v2_chr9_+_121366958_121367042	0.241724	Hoxa9_Hoxb9	ENSMUST00000045903.6|Trak1|ENSMUSG00000032536.9|trafficking protein, kinesin binding 1
mm10_v2_chr3_+_66985680_66985692	0.237317	Hoxa9_Hoxb9	ENSMUST00000065047.6|Rsrc1|ENSMUSG00000034544.11|arginine/serine-rich coiled-coil 1
mm10_v2_chr2_+_125136692_125136769	0.231876	Hoxa9_Hoxb9	ENSMUST00000099452.2|Ctxn2|ENSMUSG00000074872.2|cortexin 2
mm10_v2_chr2_+_22622183_22622205	0.219341	Hoxa9_Hoxb9	ENSMUST00000028123.3|Gad2|ENSMUSG00000026787.3|glutamic acid decarboxylase 2
mm10_v2_chr5_+_137787769_137787807	0.197549	Hoxa9_Hoxb9	ENSMUST00000035852.7|Zcwpw1|ENSMUSG00000037108.7|zinc finger, CW type with PWWP domain 1
mm10_v2_chr5_+_145204523_145204668	0.188948	Hoxa9_Hoxb9	ENSMUST00000085671.3|Zkscan5|ENSMUSG00000055991.9|zinc finger with KRAB and SCAN domains 5 	ENSMUST00000031601.7|Zkscan5|ENSMUSG00000055991.9|zinc finger with KRAB and SCAN domains 5
mm10_v2_chr8_+_112570043_112570060	0.180489	Hoxa9_Hoxb9	ENSMUST00000034225.6|Cntnap4|ENSMUSG00000031772.11|contactin associated protein-like 4 	ENSMUST00000118171.1|Cntnap4|ENSMUSG00000031772.11|contactin associated protein-like 4
mm10_v2_chr9_+_92309362_92309386	0.173721	Hoxa9_Hoxb9	ENSMUST00000098477.1|1700057G04Rik|ENSMUSG00000074139.2|RIKEN cDNA 1700057G04 gene 	ENSMUST00000150594.1|1700057G04Rik|ENSMUSG00000074139.2|RIKEN cDNA 1700057G04 gene
mm10_v2_chr7_+_28277706_28277770	0.171068	Hoxa9_Hoxb9	ENSMUST00000094651.2|Eid2b|ENSMUSG00000070705.2|EP300 interacting inhibitor of differentiation 2B
mm10_v2_chr4_-_133967296_133967441	0.168368	Hoxa9_Hoxb9	ENSMUST00000105893.1|Hmgn2|ENSMUSG00000003038.9|high mobility group nucleosomal binding domain 2
mm10_v2_chr10_-_63927434_63927434	0.163746	Hoxa9_Hoxb9	ENSMUST00000079279.3|Gm10118|ENSMUSG00000062561.3|predicted gene 10118
mm10_v2_chr2_-_80447625_80447625	0.161294	Hoxa9_Hoxb9	ENSMUST00000028389.3|Frzb|ENSMUSG00000027004.3|frizzled-related protein
mm10_v2_chr2_-_67433181_67433181	0.158497	Hoxa9_Hoxb9	ENSMUST00000180773.1|Gm26727|ENSMUSG00000097112.1|predicted gene, 26727
mm10_v2_chr2_-_58052832_58052870	0.158412	Hoxa9_Hoxb9	ENSMUST00000090940.5|Ermn|ENSMUSG00000026830.9|ermin, ERM-like protein
mm10_v2_chr5_+_34999111_34999184	0.15644	Hoxa9_Hoxb9	ENSMUST00000114283.1|Rgs12|ENSMUSG00000029101.8|regulator of G-protein signaling 12
mm10_v2_chr1_+_24005505_24005505	0.156262	Hoxa9_Hoxb9	ENSMUST00000181961.1|Gm26524|ENSMUSG00000096985.1|predicted gene, 26524
mm10_v2_chrX_-_134541847_134541900	0.15421	Hoxa9_Hoxb9	ENSMUST00000054213.4|Timm8a1|ENSMUSG00000048007.4|translocase of inner mitochondrial membrane 8A1
mm10_v2_chr7_+_45062429_45062505	0.152943	Hoxa9_Hoxb9	ENSMUST00000107830.1|Nosip|ENSMUSG00000003421.6|nitric oxide synthase interacting protein 	ENSMUST00000003513.3|Nosip|ENSMUSG00000003421.6|nitric oxide synthase interacting protein 	ENSMUST00000107829.1|Nosip|ENSMUSG00000003421.6|nitric oxide synthase interacting protein 	ENSMUST00000150609.1|Nosip|ENSMUSG00000003421.6|nitric oxide synthase interacting protein
mm10_v2_chr2_+_180967291_180967303	0.149246	Hoxa9_Hoxb9	ENSMUST00000108859.1|Arfgap1|ENSMUSG00000027575.13|ADP-ribosylation factor GTPase activating protein 1
mm10_v2_chr12_-_100159601_100159672	0.148799	Hoxa9_Hoxb9	ENSMUST00000021596.7|Nrde2|ENSMUSG00000021179.7|nrde-2 necessary for RNA interference, domain containing
mm10_v2_chr7_-_45062393_45062436	0.147009	Hoxa9_Hoxb9	ENSMUST00000129101.1|Prrg2|ENSMUSG00000007837.4|proline-rich Gla (G-carboxyglutamic acid) polypeptide 2
mm10_v2_chr7_-_127449109_127449166	0.144089	Hoxa9_Hoxb9	ENSMUST00000053392.4|Zfp689|ENSMUSG00000048921.5|zinc finger protein 689
mm10_v2_chr7_-_127448993_127449077	0.140953	Hoxa9_Hoxb9	ENSMUST00000106299.1|Zfp689|ENSMUSG00000048921.5|zinc finger protein 689
mm10_v2_chr7_+_28693997_28694019	0.138292	Hoxa9_Hoxb9	ENSMUST00000108280.1|Fbxo27|ENSMUSG00000037463.8|F-box protein 27
mm10_v2_chr11_-_109472611_109472688	0.135739	Hoxa9_Hoxb9	ENSMUST00000168740.1|Slc16a6|ENSMUSG00000041920.8|solute carrier family 16 (monocarboxylic acid transporters), member 6
mm10_v2_chr11_-_109298066_109298079	0.135093	Hoxa9_Hoxb9	ENSMUST00000106706.1|Rgs9|ENSMUSG00000020599.7|regulator of G-protein signaling 9
mm10_v2_chr10_-_80590292_80590341	0.133993	Hoxa9_Hoxb9	ENSMUST00000003436.5|Abhd17a|ENSMUSG00000003346.8|abhydrolase domain containing 17A
mm10_v2_chr4_-_49597860_49597892	0.133804	Hoxa9_Hoxb9	ENSMUST00000042750.2|Tmem246|ENSMUSG00000039611.2|transmembrane protein 246
mm10_v2_chr14_-_70323783_70323814	0.131222	Hoxa9_Hoxb9	ENSMUST00000151011.1|Slc39a14|ENSMUSG00000022094.9|solute carrier family 39 (zinc transporter), member 14
mm10_v2_chr3_+_138065052_138065078	0.128589	Hoxa9_Hoxb9	ENSMUST00000163080.2|1110002E22Rik|ENSMUSG00000090066.2|RIKEN cDNA 1110002E22 gene
mm10_v2_chr3_-_95106907_95106930	0.119751	Hoxa9_Hoxb9	ENSMUST00000107233.2|Pip5k1a|ENSMUSG00000028126.10|phosphatidylinositol-4-phosphate 5-kinase, type 1 alpha
mm10_v2_chr5_+_34999070_34999086	0.119388	Hoxa9_Hoxb9	ENSMUST00000114280.1|Rgs12|ENSMUSG00000029101.8|regulator of G-protein signaling 12
mm10_v2_chr2_+_32395896_32395896	0.112422	Hoxa9_Hoxb9	ENSMUST00000028162.3|Ptges2|ENSMUSG00000026820.3|prostaglandin E synthase 2
mm10_v2_chr14_+_105681824_105681831	0.103361	Hoxa9_Hoxb9	ENSMUST00000073238.6|Gm10076|ENSMUSG00000060143.6|predicted gene 10076
mm10_v2_chr9_-_19928282_19928324	0.102393	Hoxa9_Hoxb9	ENSMUST00000082002.5|Gm7808|ENSMUSG00000091460.2|predicted pseudogene 7808
mm10_v2_chr5_-_62766153_62766246	0.101008	Hoxa9_Hoxb9	ENSMUST00000076623.4|Arap2|ENSMUSG00000037999.9|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2
mm10_v2_chr4_-_136053343_136053415	0.100589	Hoxa9_Hoxb9	ENSMUST00000102536.4|Rpl11|ENSMUSG00000059291.9|ribosomal protein L11
mm10_v2_chr18_-_31447383_31447415	0.0973513	Hoxa9_Hoxb9	ENSMUST00000025110.3|Syt4|ENSMUSG00000024261.5|synaptotagmin IV
mm10_v2_chr5_-_107869153_107869175	0.0937412	Hoxa9_Hoxb9	ENSMUST00000128723.1|Evi5|ENSMUSG00000011831.10|ecotropic viral integration site 5 	ENSMUST00000124034.1|Evi5|ENSMUSG00000011831.10|ecotropic viral integration site 5
mm10_v2_chr7_+_142533012_142533054	0.0916381	Hoxa9_Hoxb9	ENSMUST00000038675.6|Mrpl23|ENSMUSG00000037772.6|mitochondrial ribosomal protein L23
mm10_v2_chr7_+_30231884_30231948	0.0912444	Hoxa9_Hoxb9	ENSMUST00000019882.9|Polr2i|ENSMUSG00000019738.9|polymerase (RNA) II (DNA directed) polypeptide I
mm10_v2_chr4_+_133130505_133130590	0.0910956	Hoxa9_Hoxb9	ENSMUST00000084241.5|Wasf2|ENSMUSG00000028868.7|WAS protein family, member 2 	ENSMUST00000138831.1|Wasf2|ENSMUSG00000028868.7|WAS protein family, member 2
mm10_v2_chr16_-_17531019_17531136	0.0907001	Hoxa9_Hoxb9	ENSMUST00000142666.1|Thap7|ENSMUSG00000022760.9|THAP domain containing 7 	ENSMUST00000100125.3|Thap7|ENSMUSG00000022760.9|THAP domain containing 7
mm10_v2_chr9_+_122351555_122351608	0.0888715	Hoxa9_Hoxb9	ENSMUST00000156520.1|Abhd5|ENSMUSG00000032540.9|abhydrolase domain containing 5
mm10_v2_chr7_-_30232186_30232272	0.0850292	Hoxa9_Hoxb9	ENSMUST00000006254.5|Tbcb|ENSMUSG00000006095.6|tubulin folding cofactor B
mm10_v2_chr7_+_44896077_44896106	0.0819988	Hoxa9_Hoxb9	ENSMUST00000071207.7|Fuz|ENSMUSG00000011658.8|fuzzy homolog (Drosophila) 	ENSMUST00000166849.1|Fuz|ENSMUSG00000011658.8|fuzzy homolog (Drosophila) 	ENSMUST00000168712.1|Fuz|ENSMUSG00000011658.8|fuzzy homolog (Drosophila) 	ENSMUST00000168389.1|Fuz|ENSMUSG00000011658.8|fuzzy homolog (Drosophila)
mm10_v2_chr16_+_91225550_91225579	0.0801422	Hoxa9_Hoxb9	ENSMUST00000035608.8|Olig2|ENSMUSG00000039830.8|oligodendrocyte transcription factor 2
mm10_v2_chr11_-_115933464_115933498	0.0796411	Hoxa9_Hoxb9	ENSMUST00000021097.3|Recql5|ENSMUSG00000020752.5|RecQ protein-like 5
mm10_v2_chr5_-_145201829_145201873	0.0793179	Hoxa9_Hoxb9	ENSMUST00000162220.1|Zkscan14|ENSMUSG00000029627.11|zinc finger with KRAB and SCAN domains 14 	ENSMUST00000031632.8|Zkscan14|ENSMUSG00000029627.11|zinc finger with KRAB and SCAN domains 14
mm10_v2_chr4_+_44012638_44012660	0.0746098	Hoxa9_Hoxb9	ENSMUST00000107847.3|Clta|ENSMUSG00000028478.12|clathrin, light polypeptide (Lca) 	ENSMUST00000170241.1|Clta|ENSMUSG00000028478.12|clathrin, light polypeptide (Lca)
mm10_v2_chr8_+_120488416_120488490	0.0730203	Hoxa9_Hoxb9	ENSMUST00000034279.9|Gse1|ENSMUSG00000031822.12|genetic suppressor element 1
mm10_v2_chr8_-_33843562_33843671	0.0727204	Hoxa9_Hoxb9	ENSMUST00000183062.1|Rbpms|ENSMUSG00000031586.10|RNA binding protein gene with multiple splicing
mm10_v2_chr7_-_38271310_38271390	0.070905	Hoxa9_Hoxb9	ENSMUST00000032585.6|Pop4|ENSMUSG00000030423.6|processing of precursor 4, ribonuclease P/MRP family, (S. cerevisiae)
mm10_v2_chr17_-_45572495_45572555	0.0702081	Hoxa9_Hoxb9	ENSMUST00000130406.1|Hsp90ab1|ENSMUSG00000023944.8|heat shock protein 90 alpha (cytosolic), class B member 1
mm10_v2_chr4_+_44012661_44012694	0.0665643	Hoxa9_Hoxb9	ENSMUST00000107849.3|Clta|ENSMUSG00000028478.12|clathrin, light polypeptide (Lca) 	ENSMUST00000107851.3|Clta|ENSMUSG00000028478.12|clathrin, light polypeptide (Lca) 	ENSMUST00000107845.3|Clta|ENSMUSG00000028478.12|clathrin, light polypeptide (Lca)
mm10_v2_chr5_+_63812447_63812538	0.0622188	Hoxa9_Hoxb9	ENSMUST00000081747.3|0610040J01Rik|ENSMUSG00000060512.3|RIKEN cDNA 0610040J01 gene
mm10_v2_chr17_-_70998010_70998013	0.062063	Hoxa9_Hoxb9	ENSMUST00000024846.6|Myl12a|ENSMUSG00000024048.8|myosin, light chain 12A, regulatory, non-sarcomeric
mm10_v2_chr6_-_124965207_124965243	0.0620181	Hoxa9_Hoxb9	ENSMUST00000148485.1|Cops7a|ENSMUSG00000030127.9|COP9 (constitutive photomorphogenic) homolog, subunit 7a (Arabidopsis thaliana)
mm10_v2_chr2_-_165287755_165287845	0.0595608	Hoxa9_Hoxb9	ENSMUST00000109298.1|Slc35c2|ENSMUSG00000017664.10|solute carrier family 35, member C2 	ENSMUST00000109299.1|Slc35c2|ENSMUSG00000017664.10|solute carrier family 35, member C2 	ENSMUST00000130393.1|Slc35c2|ENSMUSG00000017664.10|solute carrier family 35, member C2 	ENSMUST00000017808.7|Slc35c2|ENSMUSG00000017664.10|solute carrier family 35, member C2 	ENSMUST00000131409.1|Slc35c2|ENSMUSG00000017664.10|solute carrier family 35, member C2 	ENSMUST00000156134.1|Slc35c2|ENSMUSG00000017664.10|solute carrier family 35, member C2 	ENSMUST00000133961.1|Slc35c2|ENSMUSG00000017664.10|solute carrier family 35, member C2
mm10_v2_chr8_-_111992258_111992302	0.0591552	Hoxa9_Hoxb9	ENSMUST00000034427.5|Adat1|ENSMUSG00000031949.11|adenosine deaminase, tRNA-specific 1 	ENSMUST00000139820.1|Adat1|ENSMUSG00000031949.11|adenosine deaminase, tRNA-specific 1
mm10_v2_chr3_-_113574242_113574272	0.05501	Hoxa9_Hoxb9	ENSMUST00000142505.2|Amy1|ENSMUSG00000074264.6|amylase 1, salivary
mm10_v2_chr18_-_31317043_31317133	0.0540994	Hoxa9_Hoxb9	ENSMUST00000139924.1|Rit2|ENSMUSG00000057455.6|Ras-like without CAAX 2 	ENSMUST00000153060.1|Rit2|ENSMUSG00000057455.6|Ras-like without CAAX 2
mm10_v2_chr15_+_81936753_81936839	0.0495561	Hoxa9_Hoxb9	ENSMUST00000038757.7|Csdc2|ENSMUSG00000042109.7|cold shock domain containing C2, RNA binding
mm10_v2_chr3_+_108653931_108653964	0.0464633	Hoxa9_Hoxb9	ENSMUST00000029483.8|Clcc1|ENSMUSG00000027884.10|chloride channel CLIC-like 1 	ENSMUST00000124384.1|Clcc1|ENSMUSG00000027884.10|chloride channel CLIC-like 1
mm10_v2_chr17_+_35861343_35861486	0.0458235	Hoxa9_Hoxb9	ENSMUST00000172931.1|Nrm|ENSMUSG00000059791.8|nurim (nuclear envelope membrane protein)
mm10_v2_chr7_+_56050135_56050217	0.0446446	Hoxa9_Hoxb9	ENSMUST00000076226.6|Herc2|ENSMUSG00000030451.9|hect (homologous to the E6-AP (UBE3A) carboxyl terminus) domain and RCC1 (CHC1)-like domain (RLD) 2
mm10_v2_chr18_+_12599894_12599926	0.044241	Hoxa9_Hoxb9	ENSMUST00000169401.1|Ttc39c|ENSMUSG00000024424.8|tetratricopeptide repeat domain 39C
mm10_v2_chr12_+_112620030_112620056	0.0435346	Hoxa9_Hoxb9	ENSMUST00000180015.1|Adssl1|ENSMUSG00000011148.7|adenylosuccinate synthetase like 1 	ENSMUST00000021726.6|Adssl1|ENSMUSG00000011148.7|adenylosuccinate synthetase like 1
mm10_v2_chr19_-_7341792_7341829	0.0413567	Hoxa9_Hoxb9	ENSMUST00000164205.1|Mark2|ENSMUSG00000024969.9|MAP/microtubule affinity-regulating kinase 2 	ENSMUST00000165286.1|Mark2|ENSMUSG00000024969.9|MAP/microtubule affinity-regulating kinase 2 	ENSMUST00000168324.1|Mark2|ENSMUSG00000024969.9|MAP/microtubule affinity-regulating kinase 2 	ENSMUST00000032557.8|Mark2|ENSMUSG00000024969.9|MAP/microtubule affinity-regulating kinase 2
mm10_v2_chr6_+_147042755_147042797	0.0374123	Hoxa9_Hoxb9	ENSMUST00000036111.7|Mrps35|ENSMUSG00000040112.7|mitochondrial ribosomal protein S35
mm10_v2_chr2_-_177267036_177267036	0.0345411	Hoxa9_Hoxb9	ENSMUST00000108963.1|Gm14409|ENSMUSG00000078869.2|predicted gene 14409
mm10_v2_chr7_-_130772652_130772652	0.0325284	Hoxa9_Hoxb9	ENSMUST00000057134.4|Etos1|ENSMUSG00000050189.4|ectopic ossification 1
mm10_v2_chr13_-_91388079_91388090	0.0306607	Hoxa9_Hoxb9	ENSMUST00000181054.1|A830009L08Rik|ENSMUSG00000097182.1|RIKEN cDNA A830009L08 gene
mm10_v2_chr1_-_65051119_65051150	0.030473	Hoxa9_Hoxb9	ENSMUST00000161960.1|Cryge|ENSMUSG00000070870.6|crystallin, gamma E 	ENSMUST00000087359.5|Cryge|ENSMUSG00000070870.6|crystallin, gamma E
mm10_v2_chr3_+_66985647_66985678	0.0303681	Hoxa9_Hoxb9	ENSMUST00000162362.1|Rsrc1|ENSMUSG00000034544.11|arginine/serine-rich coiled-coil 1 	ENSMUST00000065074.7|Rsrc1|ENSMUSG00000034544.11|arginine/serine-rich coiled-coil 1
mm10_v2_chr5_+_31452427_31452452	0.0295107	Hoxa9_Hoxb9	ENSMUST00000076264.4|Zfp512|ENSMUSG00000062761.4|zinc finger protein 512
mm10_v2_chr15_-_79062866_79062941	0.0293164	Hoxa9_Hoxb9	ENSMUST00000151889.1|Ankrd54|ENSMUSG00000033055.4|ankyrin repeat domain 54 	ENSMUST00000040676.4|Ankrd54|ENSMUSG00000033055.4|ankyrin repeat domain 54
mm10_v2_chr18_+_37655891_37655915	0.0267526	Hoxa9_Hoxb9	ENSMUST00000097608.2|3222401L13Rik|ENSMUSG00000073590.2|RIKEN cDNA 3222401L13 gene
mm10_v2_chr5_+_115235836_115235836	0.0256849	Hoxa9_Hoxb9	ENSMUST00000081497.6|Pop5|ENSMUSG00000060152.8|processing of precursor 5, ribonuclease P/MRP family (S. cerevisiae)
mm10_v2_chr19_+_44203265_44203288	0.0248237	Hoxa9_Hoxb9	ENSMUST00000026220.5|Scd3|ENSMUSG00000025202.7|stearoyl-coenzyme A desaturase 3
mm10_v2_chr8_+_27042555_27042589	0.0234792	Hoxa9_Hoxb9	ENSMUST00000033875.8|Prosc|ENSMUSG00000031485.8|proline synthetase co-transcribed 	ENSMUST00000098851.4|Prosc|ENSMUSG00000031485.8|proline synthetase co-transcribed
mm10_v2_chr19_-_7341848_7341863	0.0232988	Hoxa9_Hoxb9	ENSMUST00000171393.1|Mark2|ENSMUSG00000024969.9|MAP/microtubule affinity-regulating kinase 2
mm10_v2_chr9_+_45055166_45055195	0.0229694	Hoxa9_Hoxb9	ENSMUST00000114664.1|Mpzl3|ENSMUSG00000070305.4|myelin protein zero-like 3 	ENSMUST00000093856.3|Mpzl3|ENSMUSG00000070305.4|myelin protein zero-like 3
mm10_v2_chr5_-_32746317_32746411	0.02296	Hoxa9_Hoxb9	ENSMUST00000135248.1|Pisd|ENSMUSG00000023452.12|phosphatidylserine decarboxylase
mm10_v2_chr3_-_96905294_96905346	0.0205249	Hoxa9_Hoxb9	ENSMUST00000029738.7|Gpr89|ENSMUSG00000028096.7|G protein-coupled receptor 89
mm10_v2_chrX_+_56447965_56447965	0.0194865	Hoxa9_Hoxb9	ENSMUST00000079663.6|Gm2174|ENSMUSG00000058932.6|predicted gene 2174
mm10_v2_chr15_+_81936911_81936982	0.0162987	Hoxa9_Hoxb9	ENSMUST00000135663.1|Csdc2|ENSMUSG00000042109.7|cold shock domain containing C2, RNA binding
mm10_v2_chr3_+_66985700_66985740	0.0151034	Hoxa9_Hoxb9	ENSMUST00000046542.6|Rsrc1|ENSMUSG00000034544.11|arginine/serine-rich coiled-coil 1 	ENSMUST00000162693.1|Rsrc1|ENSMUSG00000034544.11|arginine/serine-rich coiled-coil 1
mm10_v2_chrX_+_159303266_159303281	0.0143702	Hoxa9_Hoxb9	ENSMUST00000112491.1|Rps6ka3|ENSMUSG00000031309.9|ribosomal protein S6 kinase polypeptide 3
mm10_v2_chr2_+_28205648_28205672	0.0133092	Hoxa9_Hoxb9	ENSMUST00000102879.3|Olfm1|ENSMUSG00000026833.12|olfactomedin 1 	ENSMUST00000028177.4|Olfm1|ENSMUSG00000026833.12|olfactomedin 1
mm10_v2_chr3_+_24333046_24333046	0.0116108	Hoxa9_Hoxb9	ENSMUST00000077389.6|Gm7536|ENSMUSG00000057036.6|predicted gene 7536
mm10_v2_chr3_-_96197580_96197634	0.0111348	Hoxa9_Hoxb9	ENSMUST00000016087.3|Bola1|ENSMUSG00000015943.5|bolA-like 1 (E. coli)
mm10_v2_chr7_+_103550368_103550368	0.00680537	Hoxa9_Hoxb9	ENSMUST00000106888.1|Olfr613|ENSMUSG00000078624.2|olfactory receptor 613
