mm10_v2_chr4_+_144893127_144893151	9.08103	Hoxd11_Cdx1_Hoxc11	ENSMUST00000142808.1|Dhrs3|ENSMUSG00000066026.8|dehydrogenase/reductase (SDR family) member 3
mm10_v2_chr13_-_84064772_84064808	8.72888	Hoxd11_Cdx1_Hoxc11	ENSMUST00000182477.1|Gm17750|ENSMUSG00000098087.1|predicted gene, 17750
mm10_v2_chr4_-_154636831_154636873	6.84061	Hoxd11_Cdx1_Hoxc11	ENSMUST00000030902.6|Prdm16|ENSMUSG00000039410.10|PR domain containing 16 	ENSMUST00000105637.1|Prdm16|ENSMUSG00000039410.10|PR domain containing 16 	ENSMUST00000070313.7|Prdm16|ENSMUSG00000039410.10|PR domain containing 16 	ENSMUST00000105636.1|Prdm16|ENSMUSG00000039410.10|PR domain containing 16 	ENSMUST00000105638.2|Prdm16|ENSMUSG00000039410.10|PR domain containing 16 	ENSMUST00000097759.2|Prdm16|ENSMUSG00000039410.10|PR domain containing 16 	ENSMUST00000124771.1|Prdm16|ENSMUSG00000039410.10|PR domain containing 16
mm10_v2_chr4_+_144892813_144892835	6.2864	Hoxd11_Cdx1_Hoxc11	ENSMUST00000105744.1|Dhrs3|ENSMUSG00000066026.8|dehydrogenase/reductase (SDR family) member 3 	ENSMUST00000171001.1|Dhrs3|ENSMUSG00000066026.8|dehydrogenase/reductase (SDR family) member 3
mm10_v2_chr4_+_144893077_144893103	4.81658	Hoxd11_Cdx1_Hoxc11	ENSMUST00000154208.1|Dhrs3|ENSMUSG00000066026.8|dehydrogenase/reductase (SDR family) member 3
mm10_v2_chr3_-_49757257_49757316	4.72127	Hoxd11_Cdx1_Hoxc11	ENSMUST00000035931.7|Pcdh18|ENSMUSG00000037892.8|protocadherin 18
mm10_v2_chr15_+_25773985_25774042	4.26156	Hoxd11_Cdx1_Hoxc11	ENSMUST00000125667.1|Myo10|ENSMUSG00000022272.11|myosin X
mm10_v2_chr17_+_3397189_3397207	3.65303	Hoxd11_Cdx1_Hoxc11	ENSMUST00000072156.6|Tiam2|ENSMUSG00000023800.8|T cell lymphoma invasion and metastasis 2
mm10_v2_chr3_+_62419668_62419668	3.57761	Hoxd11_Cdx1_Hoxc11	ENSMUST00000161057.1|Arhgef26|ENSMUSG00000036885.8|Rho guanine nucleotide exchange factor (GEF) 26
mm10_v2_chr5_-_62766153_62766246	3.57244	Hoxd11_Cdx1_Hoxc11	ENSMUST00000076623.4|Arap2|ENSMUSG00000037999.9|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2
mm10_v2_chr1_+_159737510_159737510	3.28233	Hoxd11_Cdx1_Hoxc11	ENSMUST00000111669.3|Tnr|ENSMUSG00000015829.8|tenascin R
mm10_v2_chr18_+_69593361_69593450	3.24583	Hoxd11_Cdx1_Hoxc11	ENSMUST00000114978.2|Tcf4|ENSMUSG00000053477.9|transcription factor 4 	ENSMUST00000114977.1|Tcf4|ENSMUSG00000053477.9|transcription factor 4
mm10_v2_chr1_+_19103022_19103043	3.10244	Hoxd11_Cdx1_Hoxc11	ENSMUST00000037294.7|Tfap2d|ENSMUSG00000042596.7|transcription factor AP-2, delta
mm10_v2_chr3_+_66985680_66985692	2.94822	Hoxd11_Cdx1_Hoxc11	ENSMUST00000065047.6|Rsrc1|ENSMUSG00000034544.11|arginine/serine-rich coiled-coil 1
mm10_v2_chr1_-_56969864_56969875	2.60533	Hoxd11_Cdx1_Hoxc11	ENSMUST00000177424.1|Satb2|ENSMUSG00000038331.9|special AT-rich sequence binding protein 2
mm10_v2_chr17_-_35074485_35074500	2.40965	Hoxd11_Cdx1_Hoxc11	ENSMUST00000007259.3|Ly6g6d|ENSMUSG00000073413.3|lymphocyte antigen 6 complex, locus G6D
mm10_v2_chr7_-_142661858_142661880	2.40503	Hoxd11_Cdx1_Hoxc11	ENSMUST00000145896.2|Igf2|ENSMUSG00000048583.10|insulin-like growth factor 2
mm10_v2_chr9_+_62858085_62858138	2.30511	Hoxd11_Cdx1_Hoxc11	ENSMUST00000034777.6|Calml4|ENSMUSG00000032246.7|calmodulin-like 4 	ENSMUST00000163820.1|Calml4|ENSMUSG00000032246.7|calmodulin-like 4
mm10_v2_chr1_-_56969827_56969850	2.22933	Hoxd11_Cdx1_Hoxc11	ENSMUST00000176759.1|Satb2|ENSMUSG00000038331.9|special AT-rich sequence binding protein 2
mm10_v2_chr6_+_80018877_80018945	2.06556	Hoxd11_Cdx1_Hoxc11	ENSMUST00000147663.1|Lrrtm4|ENSMUSG00000052581.7|leucine rich repeat transmembrane neuronal 4 	ENSMUST00000128718.1|Lrrtm4|ENSMUSG00000052581.7|leucine rich repeat transmembrane neuronal 4 	ENSMUST00000126005.1|Lrrtm4|ENSMUSG00000052581.7|leucine rich repeat transmembrane neuronal 4 	ENSMUST00000133918.1|Lrrtm4|ENSMUSG00000052581.7|leucine rich repeat transmembrane neuronal 4
mm10_v2_chr16_+_42907563_42907684	1.98963	Hoxd11_Cdx1_Hoxc11	ENSMUST00000151244.1|Zbtb20|ENSMUSG00000022708.10|zinc finger and BTB domain containing 20 	ENSMUST00000114694.2|Zbtb20|ENSMUSG00000022708.10|zinc finger and BTB domain containing 20
mm10_v2_chr7_-_73537621_73537766	1.96174	Hoxd11_Cdx1_Hoxc11	ENSMUST00000172704.1|Chd2|ENSMUSG00000078671.4|chromodomain helicase DNA binding protein 2
mm10_v2_chr1_-_45503282_45503282	1.90172	Hoxd11_Cdx1_Hoxc11	ENSMUST00000086430.4|Col5a2|ENSMUSG00000026042.10|collagen, type V, alpha 2
mm10_v2_chr18_-_62756275_62756347	1.83611	Hoxd11_Cdx1_Hoxc11	ENSMUST00000067450.1|2700046A07Rik|ENSMUSG00000041789.6|RIKEN cDNA 2700046A07 gene 	ENSMUST00000048109.5|2700046A07Rik|ENSMUSG00000041789.6|RIKEN cDNA 2700046A07 gene
mm10_v2_chr1_-_163289214_163289235	1.60433	Hoxd11_Cdx1_Hoxc11	ENSMUST00000183691.1|Prrx1|ENSMUSG00000026586.10|paired related homeobox 1
mm10_v2_chrX_+_141475385_141475468	1.45034	Hoxd11_Cdx1_Hoxc11	ENSMUST00000112931.1|Col4a5|ENSMUSG00000031274.10|collagen, type IV, alpha 5 	ENSMUST00000112930.1|Col4a5|ENSMUSG00000031274.10|collagen, type IV, alpha 5
mm10_v2_chr18_-_35498856_35498925	1.42941	Hoxd11_Cdx1_Hoxc11	ENSMUST00000025215.8|Sil1|ENSMUSG00000024357.9|endoplasmic reticulum chaperone SIL1 homolog (S. cerevisiae)
mm10_v2_chr4_-_64046925_64047015	1.41583	Hoxd11_Cdx1_Hoxc11	ENSMUST00000107377.3|Tnc|ENSMUSG00000028364.9|tenascin C
mm10_v2_chr6_+_125215551_125215591	1.41187	Hoxd11_Cdx1_Hoxc11	ENSMUST00000032487.7|Vamp1|ENSMUSG00000030337.10|vesicle-associated membrane protein 1 	ENSMUST00000100942.2|Vamp1|ENSMUSG00000030337.10|vesicle-associated membrane protein 1 	ENSMUST00000063588.8|Vamp1|ENSMUSG00000030337.10|vesicle-associated membrane protein 1
mm10_v2_chr16_+_10812915_10812915	1.4047	Hoxd11_Cdx1_Hoxc11	ENSMUST00000115822.1|Gm11172|ENSMUSG00000079740.1|predicted gene 11172
mm10_v2_chr1_-_152625212_152625220	1.37232	Hoxd11_Cdx1_Hoxc11	ENSMUST00000027760.7|Rgl1|ENSMUSG00000026482.7|ral guanine nucleotide dissociation stimulator,-like 1
mm10_v2_chr4_-_88033328_88033373	1.35601	Hoxd11_Cdx1_Hoxc11	ENSMUST00000078090.5|Mllt3|ENSMUSG00000028496.11|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3
mm10_v2_chr4_+_136143497_136143497	1.34991	Hoxd11_Cdx1_Hoxc11	ENSMUST00000008016.2|Id3|ENSMUSG00000007872.3|inhibitor of DNA binding 3
mm10_v2_chr6_-_97617536_97617597	1.32567	Hoxd11_Cdx1_Hoxc11	ENSMUST00000113355.2|Frmd4b|ENSMUSG00000030064.10|FERM domain containing 4B
mm10_v2_chr7_-_27181149_27181162	1.25384	Hoxd11_Cdx1_Hoxc11	ENSMUST00000071986.6|Mia|ENSMUSG00000089661.3|melanoma inhibitory activity 	ENSMUST00000121848.1|Mia|ENSMUSG00000089661.3|melanoma inhibitory activity
mm10_v2_chr6_+_125552948_125552980	1.21881	Hoxd11_Cdx1_Hoxc11	ENSMUST00000112254.1|Vwf|ENSMUSG00000001930.11|Von Willebrand factor homolog 	ENSMUST00000112253.1|Vwf|ENSMUSG00000001930.11|Von Willebrand factor homolog 	ENSMUST00000001995.7|Vwf|ENSMUSG00000001930.11|Von Willebrand factor homolog
mm10_v2_chr2_-_31845925_31846005	1.20692	Hoxd11_Cdx1_Hoxc11	ENSMUST00000028188.7|Fibcd1|ENSMUSG00000026841.7|fibrinogen C domain containing 1
mm10_v2_chr18_-_42899470_42899643	1.1691	Hoxd11_Cdx1_Hoxc11	ENSMUST00000120632.1|Ppp2r2b|ENSMUSG00000024500.12|protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), beta isoform
mm10_v2_chr13_-_101692624_101692647	1.16557	Hoxd11_Cdx1_Hoxc11	ENSMUST00000035532.6|Pik3r1|ENSMUSG00000041417.9|phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 1 (p85 alpha)
mm10_v2_chr16_+_11405648_11405713	1.0594	Hoxd11_Cdx1_Hoxc11	ENSMUST00000096273.2|Snx29|ENSMUSG00000071669.8|sorting nexin 29
mm10_v2_chr4_-_11981265_11981265	1.05243	Hoxd11_Cdx1_Hoxc11	ENSMUST00000098260.2|Gm10604|ENSMUSG00000073995.2|predicted gene 10604
mm10_v2_chr1_+_81077204_81077252	1.00826	Hoxd11_Cdx1_Hoxc11	ENSMUST00000123720.1|Nyap2|ENSMUSG00000054976.8|neuronal tyrosine-phophorylated phosphoinositide 3-kinase adaptor 2
mm10_v2_chr1_+_81077274_81077327	0.983891	Hoxd11_Cdx1_Hoxc11	ENSMUST00000068275.5|Nyap2|ENSMUSG00000054976.8|neuronal tyrosine-phophorylated phosphoinositide 3-kinase adaptor 2 	ENSMUST00000113494.2|Nyap2|ENSMUSG00000054976.8|neuronal tyrosine-phophorylated phosphoinositide 3-kinase adaptor 2
mm10_v2_chr5_-_62765618_62765656	0.981618	Hoxd11_Cdx1_Hoxc11	ENSMUST00000159470.1|Arap2|ENSMUSG00000037999.9|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2
mm10_v2_chr3_+_66219909_66219927	0.956443	Hoxd11_Cdx1_Hoxc11	ENSMUST00000029421.5|Ptx3|ENSMUSG00000027832.5|pentraxin related gene
mm10_v2_chr14_+_28511344_28511405	0.911319	Hoxd11_Cdx1_Hoxc11	ENSMUST00000112272.1|Wnt5a|ENSMUSG00000021994.8|wingless-related MMTV integration site 5A
mm10_v2_chrX_+_150547375_150547459	0.909157	Hoxd11_Cdx1_Hoxc11	ENSMUST00000066337.6|Alas2|ENSMUSG00000025270.7|aminolevulinic acid synthase 2, erythroid 	ENSMUST00000112715.1|Alas2|ENSMUSG00000025270.7|aminolevulinic acid synthase 2, erythroid
mm10_v2_chr6_-_87335758_87335775	0.904422	Hoxd11_Cdx1_Hoxc11	ENSMUST00000042025.9|Antxr1|ENSMUSG00000033420.10|anthrax toxin receptor 1
mm10_v2_chr1_+_45311538_45311638	0.901233	Hoxd11_Cdx1_Hoxc11	ENSMUST00000087883.6|Col3a1|ENSMUSG00000026043.12|collagen, type III, alpha 1
mm10_v2_chr8_+_57455898_57455923	0.893763	Hoxd11_Cdx1_Hoxc11	ENSMUST00000034023.3|Scrg1|ENSMUSG00000031610.3|scrapie responsive gene 1
mm10_v2_chr14_+_76504185_76504249	0.865813	Hoxd11_Cdx1_Hoxc11	ENSMUST00000177207.1|Tsc22d1|ENSMUSG00000022010.13|TSC22 domain family, member 1
mm10_v2_chr2_+_116067213_116067250	0.846516	Hoxd11_Cdx1_Hoxc11	ENSMUST00000152412.1|G630016G05Rik|ENSMUSG00000086308.1|RIKEN cDNA G630016G05 gene
mm10_v2_chr14_+_124005355_124005355	0.837975	Hoxd11_Cdx1_Hoxc11	ENSMUST00000166105.1|Gm17615|ENSMUSG00000090286.1|predicted gene, 17615
mm10_v2_chr10_+_42583787_42583838	0.790634	Hoxd11_Cdx1_Hoxc11	ENSMUST00000105497.1|Ostm1|ENSMUSG00000038280.6|osteopetrosis associated transmembrane protein 1 	ENSMUST00000144806.1|Ostm1|ENSMUSG00000038280.6|osteopetrosis associated transmembrane protein 1
mm10_v2_chr4_+_11704439_11704457	0.747748	Hoxd11_Cdx1_Hoxc11	ENSMUST00000108304.2|Gem|ENSMUSG00000028214.7|GTP binding protein (gene overexpressed in skeletal muscle)
mm10_v2_chr2_-_66410064_66410134	0.746524	Hoxd11_Cdx1_Hoxc11	ENSMUST00000112366.1|Scn1a|ENSMUSG00000064329.7|sodium channel, voltage-gated, type I, alpha
mm10_v2_chr9_-_44799179_44799307	0.734365	Hoxd11_Cdx1_Hoxc11	ENSMUST00000114705.1|Tmem25|ENSMUSG00000002032.10|transmembrane protein 25 	ENSMUST00000002100.7|Tmem25|ENSMUSG00000002032.10|transmembrane protein 25
mm10_v2_chr17_-_51826562_51826601	0.711157	Hoxd11_Cdx1_Hoxc11	ENSMUST00000024720.4|Satb1|ENSMUSG00000023927.9|special AT-rich sequence binding protein 1 	ENSMUST00000129667.1|Satb1|ENSMUSG00000023927.9|special AT-rich sequence binding protein 1 	ENSMUST00000156051.1|Satb1|ENSMUSG00000023927.9|special AT-rich sequence binding protein 1 	ENSMUST00000169480.1|Satb1|ENSMUSG00000023927.9|special AT-rich sequence binding protein 1 	ENSMUST00000148559.1|Satb1|ENSMUSG00000023927.9|special AT-rich sequence binding protein 1
mm10_v2_chr9_-_110624361_110624439	0.701195	Hoxd11_Cdx1_Hoxc11	ENSMUST00000035069.9|Nradd|ENSMUSG00000032491.10|neurotrophin receptor associated death domain
mm10_v2_chr2_-_170194033_170194064	0.697976	Hoxd11_Cdx1_Hoxc11	ENSMUST00000180625.1|Gm17619|ENSMUSG00000097514.1|predicted gene, 17619
mm10_v2_chr2_-_45112890_45113010	0.682352	Hoxd11_Cdx1_Hoxc11	ENSMUST00000076836.6|Zeb2|ENSMUSG00000026872.10|zinc finger E-box binding homeobox 2
mm10_v2_chr2_+_22622183_22622205	0.675307	Hoxd11_Cdx1_Hoxc11	ENSMUST00000028123.3|Gad2|ENSMUSG00000026787.3|glutamic acid decarboxylase 2
mm10_v2_chr3_+_66985700_66985740	0.661777	Hoxd11_Cdx1_Hoxc11	ENSMUST00000046542.6|Rsrc1|ENSMUSG00000034544.11|arginine/serine-rich coiled-coil 1 	ENSMUST00000162693.1|Rsrc1|ENSMUSG00000034544.11|arginine/serine-rich coiled-coil 1
mm10_v2_chr9_-_42124276_42124333	0.652659	Hoxd11_Cdx1_Hoxc11	ENSMUST00000060989.8|Sorl1|ENSMUSG00000049313.8|sortilin-related receptor, LDLR class A repeats-containing
mm10_v2_chr3_+_66985647_66985678	0.649239	Hoxd11_Cdx1_Hoxc11	ENSMUST00000162362.1|Rsrc1|ENSMUSG00000034544.11|arginine/serine-rich coiled-coil 1 	ENSMUST00000065074.7|Rsrc1|ENSMUSG00000034544.11|arginine/serine-rich coiled-coil 1
mm10_v2_chr1_+_12692430_12692485	0.627975	Hoxd11_Cdx1_Hoxc11	ENSMUST00000180062.1|Sulf1|ENSMUSG00000016918.9|sulfatase 1 	ENSMUST00000177608.1|Sulf1|ENSMUSG00000016918.9|sulfatase 1
mm10_v2_chr13_-_23622502_23622563	0.607696	Hoxd11_Cdx1_Hoxc11	ENSMUST00000062045.2|Hist1h1e|ENSMUSG00000051627.2|histone cluster 1, H1e
mm10_v2_chr2_-_116064721_116064749	0.600643	Hoxd11_Cdx1_Hoxc11	ENSMUST00000110906.2|Meis2|ENSMUSG00000027210.14|Meis homeobox 2
mm10_v2_chr1_-_157256682_157256701	0.589848	Hoxd11_Cdx1_Hoxc11	ENSMUST00000134543.1|Rasal2|ENSMUSG00000070565.5|RAS protein activator like 2
mm10_v2_chr19_-_6987621_6987764	0.582421	Hoxd11_Cdx1_Hoxc11	ENSMUST00000130048.1|Vegfb|ENSMUSG00000024962.7|vascular endothelial growth factor B 	ENSMUST00000025914.6|Vegfb|ENSMUSG00000024962.7|vascular endothelial growth factor B
mm10_v2_chr17_-_78985428_78985468	0.579626	Hoxd11_Cdx1_Hoxc11	ENSMUST00000118991.1|Prkd3|ENSMUSG00000024070.9|protein kinase D3
mm10_v2_chr2_-_116067391_116067444	0.579143	Hoxd11_Cdx1_Hoxc11	ENSMUST00000140185.1|2700033N17Rik|ENSMUSG00000086328.1|RIKEN cDNA 2700033N17 gene
mm10_v2_chr1_-_165934900_165935036	0.572797	Hoxd11_Cdx1_Hoxc11	ENSMUST00000069609.5|Pou2f1|ENSMUSG00000026565.12|POU domain, class 2, transcription factor 1 	ENSMUST00000111427.2|Pou2f1|ENSMUSG00000026565.12|POU domain, class 2, transcription factor 1 	ENSMUST00000111426.4|Pou2f1|ENSMUSG00000026565.12|POU domain, class 2, transcription factor 1
mm10_v2_chr4_-_82850721_82850814	0.569929	Hoxd11_Cdx1_Hoxc11	ENSMUST00000139401.1|Zdhhc21|ENSMUSG00000028403.9|zinc finger, DHHC domain containing 21
mm10_v2_chr6_-_119388671_119388739	0.567573	Hoxd11_Cdx1_Hoxc11	ENSMUST00000169744.1|Adipor2|ENSMUSG00000030168.7|adiponectin receptor 2
mm10_v2_chr10_-_42583628_42583639	0.56688	Hoxd11_Cdx1_Hoxc11	ENSMUST00000019938.4|Nr2e1|ENSMUSG00000019803.5|nuclear receptor subfamily 2, group E, member 1
mm10_v2_chr1_-_155099630_155099636	0.563068	Hoxd11_Cdx1_Hoxc11	ENSMUST00000055322.4|Ier5|ENSMUSG00000056708.4|immediate early response 5
mm10_v2_chr4_+_11758147_11758220	0.557799	Hoxd11_Cdx1_Hoxc11	ENSMUST00000029871.5|Cdh17|ENSMUSG00000028217.5|cadherin 17 	ENSMUST00000108303.1|Cdh17|ENSMUSG00000028217.5|cadherin 17
mm10_v2_chr7_-_29906087_29906137	0.553328	Hoxd11_Cdx1_Hoxc11	ENSMUST00000053521.8|Zfp27|ENSMUSG00000062040.8|zinc finger protein 27
mm10_v2_chr10_-_105574435_105574451	0.551779	Hoxd11_Cdx1_Hoxc11	ENSMUST00000061506.8|Tmtc2|ENSMUSG00000036019.8|transmembrane and tetratricopeptide repeat containing 2
mm10_v2_chrX_+_82948861_82948915	0.535444	Hoxd11_Cdx1_Hoxc11	ENSMUST00000114000.1|Dmd|ENSMUSG00000045103.11|dystrophin, muscular dystrophy
mm10_v2_chr2_-_33086366_33086447	0.521072	Hoxd11_Cdx1_Hoxc11	ENSMUST00000049618.2|Garnl3|ENSMUSG00000038860.9|GTPase activating RANGAP domain-like 3
mm10_v2_chr18_-_42899294_42899317	0.507747	Hoxd11_Cdx1_Hoxc11	ENSMUST00000117687.1|Ppp2r2b|ENSMUSG00000024500.12|protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), beta isoform
mm10_v2_chr1_+_63176818_63176919	0.491115	Hoxd11_Cdx1_Hoxc11	ENSMUST00000129339.1|Eef1b2|ENSMUSG00000025967.10|eukaryotic translation elongation factor 1 beta 2
mm10_v2_chr16_-_32877723_32877766	0.482289	Hoxd11_Cdx1_Hoxc11	ENSMUST00000119810.1|1700021K19Rik|ENSMUSG00000035629.11|RIKEN cDNA 1700021K19 gene
mm10_v2_chr3_+_66985947_66985986	0.476248	Hoxd11_Cdx1_Hoxc11	ENSMUST00000161726.1|Rsrc1|ENSMUSG00000034544.11|arginine/serine-rich coiled-coil 1 	ENSMUST00000160504.1|Rsrc1|ENSMUSG00000034544.11|arginine/serine-rich coiled-coil 1
mm10_v2_chr7_+_103550368_103550368	0.47509	Hoxd11_Cdx1_Hoxc11	ENSMUST00000106888.1|Olfr613|ENSMUSG00000078624.2|olfactory receptor 613
mm10_v2_chr5_+_107497718_107497759	0.455643	Hoxd11_Cdx1_Hoxc11	ENSMUST00000112671.2|A830010M20Rik|ENSMUSG00000044060.11|RIKEN cDNA A830010M20 gene
mm10_v2_chr10_+_69787431_69787458	0.449127	Hoxd11_Cdx1_Hoxc11	ENSMUST00000183240.1|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial
mm10_v2_chr18_+_35770318_35770318	0.448754	Hoxd11_Cdx1_Hoxc11	ENSMUST00000165299.1|Gm16490|ENSMUSG00000091842.1|predicted gene 16490
mm10_v2_chr13_+_80883403_80883422	0.437184	Hoxd11_Cdx1_Hoxc11	ENSMUST00000099356.2|Arrdc3|ENSMUSG00000074794.3|arrestin domain containing 3
mm10_v2_chr18_+_37655891_37655915	0.435992	Hoxd11_Cdx1_Hoxc11	ENSMUST00000097608.2|3222401L13Rik|ENSMUSG00000073590.2|RIKEN cDNA 3222401L13 gene
mm10_v2_chr3_-_87768932_87768960	0.420969	Hoxd11_Cdx1_Hoxc11	ENSMUST00000173184.1|Pear1|ENSMUSG00000028073.9|platelet endothelial aggregation receptor 1 	ENSMUST00000172621.1|Pear1|ENSMUSG00000028073.9|platelet endothelial aggregation receptor 1 	ENSMUST00000174759.1|Pear1|ENSMUSG00000028073.9|platelet endothelial aggregation receptor 1 	ENSMUST00000172590.1|Pear1|ENSMUSG00000028073.9|platelet endothelial aggregation receptor 1 	ENSMUST00000079083.5|Pear1|ENSMUSG00000028073.9|platelet endothelial aggregation receptor 1
mm10_v2_chr6_-_144209471_144209487	0.41717	Hoxd11_Cdx1_Hoxc11	ENSMUST00000038815.7|Sox5|ENSMUSG00000041540.10|SRY-box containing gene 5
mm10_v2_chr12_-_31950535_31950560	0.416547	Hoxd11_Cdx1_Hoxc11	ENSMUST00000172314.2|Hbp1|ENSMUSG00000002996.11|high mobility group box transcription factor 1
mm10_v2_chr2_+_36230426_36230491	0.410882	Hoxd11_Cdx1_Hoxc11	ENSMUST00000062069.5|Ptgs1|ENSMUSG00000047250.7|prostaglandin-endoperoxide synthase 1
mm10_v2_chr7_+_66109474_66109515	0.410286	Hoxd11_Cdx1_Hoxc11	ENSMUST00000036372.6|Chsy1|ENSMUSG00000032640.9|chondroitin sulfate synthase 1
mm10_v2_chr11_-_109473220_109473294	0.408341	Hoxd11_Cdx1_Hoxc11	ENSMUST00000070872.6|Slc16a6|ENSMUSG00000041920.8|solute carrier family 16 (monocarboxylic acid transporters), member 6
mm10_v2_chr6_-_144209558_144209647	0.400809	Hoxd11_Cdx1_Hoxc11	ENSMUST00000111749.1|Sox5|ENSMUSG00000041540.10|SRY-box containing gene 5 	ENSMUST00000170367.2|Sox5|ENSMUSG00000041540.10|SRY-box containing gene 5
mm10_v2_chr3_-_89349968_89350001	0.393418	Hoxd11_Cdx1_Hoxc11	ENSMUST00000074582.6|Adam15|ENSMUSG00000028041.11|a disintegrin and metallopeptidase domain 15 (metargidin) 	ENSMUST00000107448.2|Adam15|ENSMUSG00000028041.11|a disintegrin and metallopeptidase domain 15 (metargidin) 	ENSMUST00000029676.5|Adam15|ENSMUSG00000028041.11|a disintegrin and metallopeptidase domain 15 (metargidin)
mm10_v2_chr7_+_45062429_45062505	0.393087	Hoxd11_Cdx1_Hoxc11	ENSMUST00000107830.1|Nosip|ENSMUSG00000003421.6|nitric oxide synthase interacting protein 	ENSMUST00000003513.3|Nosip|ENSMUSG00000003421.6|nitric oxide synthase interacting protein 	ENSMUST00000107829.1|Nosip|ENSMUSG00000003421.6|nitric oxide synthase interacting protein 	ENSMUST00000150609.1|Nosip|ENSMUSG00000003421.6|nitric oxide synthase interacting protein
mm10_v2_chr10_+_90071095_90071117	0.389722	Hoxd11_Cdx1_Hoxc11	ENSMUST00000183109.1|Anks1b|ENSMUSG00000058589.8|ankyrin repeat and sterile alpha motif domain containing 1B
mm10_v2_chr12_+_33147754_33147770	0.383725	Hoxd11_Cdx1_Hoxc11	ENSMUST00000146040.1|Atxn7l1|ENSMUSG00000020564.10|ataxin 7-like 1 	ENSMUST00000125192.1|Atxn7l1|ENSMUSG00000020564.10|ataxin 7-like 1
mm10_v2_chrX_-_12673540_12673668	0.381852	Hoxd11_Cdx1_Hoxc11	ENSMUST00000060108.6|1810030O07Rik|ENSMUSG00000044148.6|RIKEN cDNA 1810030O07 gene
mm10_v2_chr5_+_107497762_107497802	0.376413	Hoxd11_Cdx1_Hoxc11	ENSMUST00000152474.1|A830010M20Rik|ENSMUSG00000044060.11|RIKEN cDNA A830010M20 gene 	ENSMUST00000060553.7|A830010M20Rik|ENSMUSG00000044060.11|RIKEN cDNA A830010M20 gene
mm10_v2_chr7_-_134232125_134232146	0.374472	Hoxd11_Cdx1_Hoxc11	ENSMUST00000127524.1|Adam12|ENSMUSG00000054555.5|a disintegrin and metallopeptidase domain 12 (meltrin alpha)
mm10_v2_chr6_-_144209448_144209469	0.368337	Hoxd11_Cdx1_Hoxc11	ENSMUST00000077160.5|Sox5|ENSMUSG00000041540.10|SRY-box containing gene 5
mm10_v2_chr6_-_13839916_13839942	0.367055	Hoxd11_Cdx1_Hoxc11	ENSMUST00000060442.7|Gpr85|ENSMUSG00000048216.7|G protein-coupled receptor 85
mm10_v2_chr15_+_85510812_85510812	0.358835	Hoxd11_Cdx1_Hoxc11	ENSMUST00000079690.2|Gm4825|ENSMUSG00000063548.2|predicted pseudogene 4825
mm10_v2_chr9_-_123678782_123678850	0.354056	Hoxd11_Cdx1_Hoxc11	ENSMUST00000170591.1|Slc6a20a|ENSMUSG00000036814.6|solute carrier family 6 (neurotransmitter transporter), member 20A 	ENSMUST00000171647.1|Slc6a20a|ENSMUSG00000036814.6|solute carrier family 6 (neurotransmitter transporter), member 20A
mm10_v2_chr16_-_91728701_91728802	0.353917	Hoxd11_Cdx1_Hoxc11	ENSMUST00000114023.2|Cryzl1|ENSMUSG00000058240.7|crystallin, zeta (quinone reductase)-like 1 	ENSMUST00000117644.1|Cryzl1|ENSMUSG00000058240.7|crystallin, zeta (quinone reductase)-like 1
mm10_v2_chr2_-_29787622_29787680	0.352642	Hoxd11_Cdx1_Hoxc11	ENSMUST00000177467.1|Trub2|ENSMUSG00000039826.7|TruB pseudouridine (psi) synthase homolog 2 (E. coli) 	ENSMUST00000113807.3|Trub2|ENSMUSG00000039826.7|TruB pseudouridine (psi) synthase homolog 2 (E. coli)
mm10_v2_chr8_+_121116163_121116177	0.345858	Hoxd11_Cdx1_Hoxc11	ENSMUST00000054691.6|Foxc2|ENSMUSG00000046714.6|forkhead box C2
mm10_v2_chr2_+_20737306_20737321	0.34058	Hoxd11_Cdx1_Hoxc11	ENSMUST00000114606.1|Etl4|ENSMUSG00000036617.10|enhancer trap locus 4 	ENSMUST00000114608.1|Etl4|ENSMUSG00000036617.10|enhancer trap locus 4
mm10_v2_chr2_+_73271925_73271939	0.336475	Hoxd11_Cdx1_Hoxc11	ENSMUST00000090813.5|Sp9|ENSMUSG00000068859.5|trans-acting transcription factor 9
mm10_v2_chr6_-_112947246_112947277	0.33276	Hoxd11_Cdx1_Hoxc11	ENSMUST00000088373.4|Srgap3|ENSMUSG00000030257.10|SLIT-ROBO Rho GTPase activating protein 3
mm10_v2_chr11_-_103267405_103267472	0.330356	Hoxd11_Cdx1_Hoxc11	ENSMUST00000021324.2|Map3k14|ENSMUSG00000020941.7|mitogen-activated protein kinase kinase kinase 14
mm10_v2_chr4_+_136284708_136284775	0.329877	Hoxd11_Cdx1_Hoxc11	ENSMUST00000130223.1|Zfp46|ENSMUSG00000051351.8|zinc finger protein 46
mm10_v2_chr9_-_123678873_123678885	0.32966	Hoxd11_Cdx1_Hoxc11	ENSMUST00000040960.6|Slc6a20a|ENSMUSG00000036814.6|solute carrier family 6 (neurotransmitter transporter), member 20A
mm10_v2_chr8_-_69902558_69902558	0.326904	Hoxd11_Cdx1_Hoxc11	ENSMUST00000110167.3|Ndufa13|ENSMUSG00000036199.8|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 13
mm10_v2_chr5_+_31054821_31054955	0.324592	Hoxd11_Cdx1_Hoxc11	ENSMUST00000174367.1|Cad|ENSMUSG00000013629.10|carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase 	ENSMUST00000170329.1|Cad|ENSMUSG00000013629.10|carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase 	ENSMUST00000031049.6|Cad|ENSMUSG00000013629.10|carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase
mm10_v2_chr7_-_134232005_134232054	0.323753	Hoxd11_Cdx1_Hoxc11	ENSMUST00000134504.1|Adam12|ENSMUSG00000054555.5|a disintegrin and metallopeptidase domain 12 (meltrin alpha)
mm10_v2_chr16_-_4880284_4880315	0.320584	Hoxd11_Cdx1_Hoxc11	ENSMUST00000037843.6|Ubald1|ENSMUSG00000039568.6|UBA-like domain containing 1
mm10_v2_chr1_-_72536930_72536999	0.319006	Hoxd11_Cdx1_Hoxc11	ENSMUST00000047786.5|March4|ENSMUSG00000039372.5|membrane-associated ring finger (C3HC4) 4
mm10_v2_chr6_-_124965207_124965243	0.317255	Hoxd11_Cdx1_Hoxc11	ENSMUST00000148485.1|Cops7a|ENSMUSG00000030127.9|COP9 (constitutive photomorphogenic) homolog, subunit 7a (Arabidopsis thaliana)
mm10_v2_chr2_+_29965560_29965717	0.308956	Hoxd11_Cdx1_Hoxc11	ENSMUST00000113717.1|Sptan1|ENSMUSG00000057738.7|spectrin alpha, non-erythrocytic 1 	ENSMUST00000113719.2|Sptan1|ENSMUSG00000057738.7|spectrin alpha, non-erythrocytic 1 	ENSMUST00000100225.2|Sptan1|ENSMUSG00000057738.7|spectrin alpha, non-erythrocytic 1 	ENSMUST00000113741.1|Sptan1|ENSMUSG00000057738.7|spectrin alpha, non-erythrocytic 1 	ENSMUST00000095083.4|Sptan1|ENSMUSG00000057738.7|spectrin alpha, non-erythrocytic 1 	ENSMUST00000046257.7|Sptan1|ENSMUSG00000057738.7|spectrin alpha, non-erythrocytic 1
mm10_v2_chr3_+_108591279_108591414	0.30765	Hoxd11_Cdx1_Hoxc11	ENSMUST00000051145.8|Wdr47|ENSMUSG00000040389.9|WD repeat domain 47 	ENSMUST00000139626.1|Wdr47|ENSMUSG00000040389.9|WD repeat domain 47
mm10_v2_chr5_+_63812447_63812538	0.306571	Hoxd11_Cdx1_Hoxc11	ENSMUST00000081747.3|0610040J01Rik|ENSMUSG00000060512.3|RIKEN cDNA 0610040J01 gene
mm10_v2_chr4_+_136284658_136284686	0.303499	Hoxd11_Cdx1_Hoxc11	ENSMUST00000144217.1|Zfp46|ENSMUSG00000051351.8|zinc finger protein 46
mm10_v2_chr11_-_84067063_84067095	0.29727	Hoxd11_Cdx1_Hoxc11	ENSMUST00000108101.1|Dusp14|ENSMUSG00000018648.9|dual specificity phosphatase 14
mm10_v2_chr3_-_89349939_89349959	0.29573	Hoxd11_Cdx1_Hoxc11	ENSMUST00000107446.1|Adam15|ENSMUSG00000028041.11|a disintegrin and metallopeptidase domain 15 (metargidin)
mm10_v2_chr3_+_88965812_88965812	0.294781	Hoxd11_Cdx1_Hoxc11	ENSMUST00000090933.4|Ash1l|ENSMUSG00000028053.7|ash1 (absent, small, or homeotic)-like (Drosophila)
mm10_v2_chr5_-_73256555_73256636	0.289361	Hoxd11_Cdx1_Hoxc11	ENSMUST00000171179.1|Fryl|ENSMUSG00000090491.1|furry homolog-like (Drosophila) 	ENSMUST00000101127.5|Fryl|ENSMUSG00000070733.7|furry homolog-like (Drosophila)
mm10_v2_chr11_-_109472611_109472688	0.281272	Hoxd11_Cdx1_Hoxc11	ENSMUST00000168740.1|Slc16a6|ENSMUSG00000041920.8|solute carrier family 16 (monocarboxylic acid transporters), member 6
mm10_v2_chr4_-_133967893_133967951	0.276781	Hoxd11_Cdx1_Hoxc11	ENSMUST00000100472.3|Hmgn2|ENSMUSG00000003038.9|high mobility group nucleosomal binding domain 2 	ENSMUST00000136327.1|Hmgn2|ENSMUSG00000003038.9|high mobility group nucleosomal binding domain 2
mm10_v2_chr17_-_35897073_35897141	0.275234	Hoxd11_Cdx1_Hoxc11	ENSMUST00000150056.1|2310061I04Rik|ENSMUSG00000050705.9|RIKEN cDNA 2310061I04 gene 	ENSMUST00000156817.1|2310061I04Rik|ENSMUSG00000050705.9|RIKEN cDNA 2310061I04 gene 	ENSMUST00000146451.1|2310061I04Rik|ENSMUSG00000050705.9|RIKEN cDNA 2310061I04 gene 	ENSMUST00000148482.1|2310061I04Rik|ENSMUSG00000050705.9|RIKEN cDNA 2310061I04 gene
mm10_v2_chr16_-_91728599_91728637	0.264681	Hoxd11_Cdx1_Hoxc11	ENSMUST00000122254.1|Cryzl1|ENSMUSG00000058240.7|crystallin, zeta (quinone reductase)-like 1
mm10_v2_chr5_+_145204523_145204668	0.261346	Hoxd11_Cdx1_Hoxc11	ENSMUST00000085671.3|Zkscan5|ENSMUSG00000055991.9|zinc finger with KRAB and SCAN domains 5 	ENSMUST00000031601.7|Zkscan5|ENSMUSG00000055991.9|zinc finger with KRAB and SCAN domains 5
mm10_v2_chr7_+_127800604_127800696	0.2605	Hoxd11_Cdx1_Hoxc11	ENSMUST00000046863.5|Hsd3b7|ENSMUSG00000042289.5|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7 	ENSMUST00000106272.1|Hsd3b7|ENSMUSG00000042289.5|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7 	ENSMUST00000139068.1|Hsd3b7|ENSMUSG00000042289.5|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7
mm10_v2_chr5_+_31054766_31054811	0.256345	Hoxd11_Cdx1_Hoxc11	ENSMUST00000013773.5|Cad|ENSMUSG00000013629.10|carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase 	ENSMUST00000114646.1|Cad|ENSMUSG00000013629.10|carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase
mm10_v2_chr12_+_55836365_55836408	0.248569	Hoxd11_Cdx1_Hoxc11	ENSMUST00000059250.6|Brms1l|ENSMUSG00000012076.7|breast cancer metastasis-suppressor 1-like
mm10_v2_chr4_-_133967296_133967441	0.244482	Hoxd11_Cdx1_Hoxc11	ENSMUST00000105893.1|Hmgn2|ENSMUSG00000003038.9|high mobility group nucleosomal binding domain 2
mm10_v2_chr2_+_69670100_69670134	0.237628	Hoxd11_Cdx1_Hoxc11	ENSMUST00000100050.3|Klhl41|ENSMUSG00000075307.3|kelch-like 41
mm10_v2_chrX_-_105928547_105928583	0.235767	Hoxd11_Cdx1_Hoxc11	ENSMUST00000101305.2|Atrx|ENSMUSG00000031229.10|alpha thalassemia/mental retardation syndrome X-linked homolog (human)
mm10_v2_chr6_+_8259288_8259312	0.23146	Hoxd11_Cdx1_Hoxc11	ENSMUST00000159335.1|Gm16039|ENSMUSG00000089862.2|predicted gene 16039
mm10_v2_chr1_+_153874335_153874354	0.229793	Hoxd11_Cdx1_Hoxc11	ENSMUST00000055314.3|Gm5531|ENSMUSG00000043282.3|predicted gene 5531
mm10_v2_chr4_+_31964081_31964263	0.227879	Hoxd11_Cdx1_Hoxc11	ENSMUST00000037607.4|Map3k7|ENSMUSG00000028284.7|mitogen-activated protein kinase kinase kinase 7 	ENSMUST00000080933.6|Map3k7|ENSMUSG00000028284.7|mitogen-activated protein kinase kinase kinase 7 	ENSMUST00000108183.1|Map3k7|ENSMUSG00000028284.7|mitogen-activated protein kinase kinase kinase 7 	ENSMUST00000108184.2|Map3k7|ENSMUSG00000028284.7|mitogen-activated protein kinase kinase kinase 7
mm10_v2_chr2_-_24048857_24048868	0.227736	Hoxd11_Cdx1_Hoxc11	ENSMUST00000114497.1|Hnmt|ENSMUSG00000026986.8|histamine N-methyltransferase
mm10_v2_chr1_-_144177259_144177372	0.221259	Hoxd11_Cdx1_Hoxc11	ENSMUST00000111941.1|Rgs13|ENSMUSG00000051079.2|regulator of G-protein signaling 13 	ENSMUST00000052375.1|Rgs13|ENSMUSG00000051079.2|regulator of G-protein signaling 13
mm10_v2_chr15_+_100761741_100761797	0.209884	Hoxd11_Cdx1_Hoxc11	ENSMUST00000023776.6|Slc4a8|ENSMUSG00000023032.6|solute carrier family 4 (anion exchanger), member 8
mm10_v2_chr4_+_62286441_62286516	0.207761	Hoxd11_Cdx1_Hoxc11	ENSMUST00000084530.2|Slc31a2|ENSMUSG00000066152.5|solute carrier family 31, member 2
mm10_v2_chr11_-_109298090_109298118	0.205301	Hoxd11_Cdx1_Hoxc11	ENSMUST00000106704.2|Rgs9|ENSMUSG00000020599.7|regulator of G-protein signaling 9
mm10_v2_chr3_+_5218589_5218614	0.200443	Hoxd11_Cdx1_Hoxc11	ENSMUST00000177488.1|Zfhx4|ENSMUSG00000025255.12|zinc finger homeodomain 4
mm10_v2_chr17_+_31433054_31433071	0.198703	Hoxd11_Cdx1_Hoxc11	ENSMUST00000136384.1|Pde9a|ENSMUSG00000041119.5|phosphodiesterase 9A
mm10_v2_chr6_-_122340499_122340510	0.197471	Hoxd11_Cdx1_Hoxc11	ENSMUST00000160843.1|Phc1|ENSMUSG00000040669.8|polyhomeotic-like 1 (Drosophila)
mm10_v2_chr10_-_128547722_128547774	0.193869	Hoxd11_Cdx1_Hoxc11	ENSMUST00000040572.3|Zc3h10|ENSMUSG00000039810.5|zinc finger CCCH type containing 10
mm10_v2_chrX_+_153139941_153140011	0.190354	Hoxd11_Cdx1_Hoxc11	ENSMUST00000039720.4|Rragb|ENSMUSG00000041658.6|Ras-related GTP binding B 	ENSMUST00000144175.2|Rragb|ENSMUSG00000041658.6|Ras-related GTP binding B
mm10_v2_chr15_-_42676967_42676978	0.188558	Hoxd11_Cdx1_Hoxc11	ENSMUST00000022921.5|Angpt1|ENSMUSG00000022309.8|angiopoietin 1
mm10_v2_chr6_-_124965403_124965458	0.188077	Hoxd11_Cdx1_Hoxc11	ENSMUST00000129446.1|Cops7a|ENSMUSG00000030127.9|COP9 (constitutive photomorphogenic) homolog, subunit 7a (Arabidopsis thaliana) 	ENSMUST00000032220.8|Cops7a|ENSMUSG00000030127.9|COP9 (constitutive photomorphogenic) homolog, subunit 7a (Arabidopsis thaliana)
mm10_v2_chr11_-_69662625_69662642	0.179815	Hoxd11_Cdx1_Hoxc11	ENSMUST00000018905.5|Mpdu1|ENSMUSG00000018761.8|mannose-P-dolichol utilization defect 1
mm10_v2_chr10_+_5593718_5593739	0.174615	Hoxd11_Cdx1_Hoxc11	ENSMUST00000051809.8|Myct1|ENSMUSG00000046916.8|myc target 1
mm10_v2_chr19_-_46395722_46395756	0.168096	Hoxd11_Cdx1_Hoxc11	ENSMUST00000040270.4|Actr1a|ENSMUSG00000025228.4|ARP1 actin-related protein 1A, centractin alpha
mm10_v2_chr7_-_100583072_100583124	0.167349	Hoxd11_Cdx1_Hoxc11	ENSMUST00000152876.1|Mrpl48|ENSMUSG00000030706.10|mitochondrial ribosomal protein L48 	ENSMUST00000150042.1|Mrpl48|ENSMUSG00000030706.10|mitochondrial ribosomal protein L48
mm10_v2_chr3_-_95106779_95106897	0.165062	Hoxd11_Cdx1_Hoxc11	ENSMUST00000005768.7|Pip5k1a|ENSMUSG00000028126.10|phosphatidylinositol-4-phosphate 5-kinase, type 1 alpha 	ENSMUST00000107232.2|Pip5k1a|ENSMUSG00000028126.10|phosphatidylinositol-4-phosphate 5-kinase, type 1 alpha 	ENSMUST00000107236.2|Pip5k1a|ENSMUSG00000028126.10|phosphatidylinositol-4-phosphate 5-kinase, type 1 alpha
mm10_v2_chr18_-_6490808_6490869	0.160221	Hoxd11_Cdx1_Hoxc11	ENSMUST00000028100.6|Epc1|ENSMUSG00000024240.7|enhancer of polycomb homolog 1 (Drosophila) 	ENSMUST00000050542.5|Epc1|ENSMUSG00000024240.7|enhancer of polycomb homolog 1 (Drosophila)
mm10_v2_chr4_-_133968611_133968650	0.158994	Hoxd11_Cdx1_Hoxc11	ENSMUST00000102552.1|Hmgn2|ENSMUSG00000003038.9|high mobility group nucleosomal binding domain 2
mm10_v2_chrX_-_74246534_74246556	0.157757	Hoxd11_Cdx1_Hoxc11	ENSMUST00000101454.2|Flna|ENSMUSG00000031328.9|filamin, alpha 	ENSMUST00000033699.6|Flna|ENSMUSG00000031328.9|filamin, alpha
mm10_v2_chr3_+_5218516_5218544	0.157134	Hoxd11_Cdx1_Hoxc11	ENSMUST00000175866.1|Zfhx4|ENSMUSG00000025255.12|zinc finger homeodomain 4
mm10_v2_chr17_-_35897371_35897431	0.153396	Hoxd11_Cdx1_Hoxc11	ENSMUST00000148721.1|2310061I04Rik|ENSMUSG00000050705.9|RIKEN cDNA 2310061I04 gene
mm10_v2_chr11_-_79504078_79504089	0.152995	Hoxd11_Cdx1_Hoxc11	ENSMUST00000164465.2|Omg|ENSMUSG00000049612.10|oligodendrocyte myelin glycoprotein
mm10_v2_chr19_-_56548122_56548222	0.15067	Hoxd11_Cdx1_Hoxc11	ENSMUST00000026063.5|Dclre1a|ENSMUSG00000025077.7|DNA cross-link repair 1A, PSO2 homolog (S. cerevisiae) 	ENSMUST00000182276.1|Dclre1a|ENSMUSG00000025077.7|DNA cross-link repair 1A, PSO2 homolog (S. cerevisiae)
mm10_v2_chr16_-_35769356_35769384	0.148758	Hoxd11_Cdx1_Hoxc11	ENSMUST00000023554.8|Dirc2|ENSMUSG00000022848.8|disrupted in renal carcinoma 2 (human)
mm10_v2_chrX_+_20364481_20364616	0.143293	Hoxd11_Cdx1_Hoxc11	ENSMUST00000033372.6|Rp2h|ENSMUSG00000060090.10|retinitis pigmentosa 2 homolog (human) 	ENSMUST00000115391.1|Rp2h|ENSMUSG00000060090.10|retinitis pigmentosa 2 homolog (human) 	ENSMUST00000115387.1|Rp2h|ENSMUSG00000060090.10|retinitis pigmentosa 2 homolog (human)
mm10_v2_chr2_+_116900152_116900216	0.138862	Hoxd11_Cdx1_Hoxc11	ENSMUST00000126467.1|D330050G23Rik|ENSMUSG00000085316.1|RIKEN cDNA D330050G23 gene 	ENSMUST00000128305.1|D330050G23Rik|ENSMUSG00000085316.1|RIKEN cDNA D330050G23 gene 	ENSMUST00000155323.1|D330050G23Rik|ENSMUSG00000085316.1|RIKEN cDNA D330050G23 gene
mm10_v2_chr4_-_133967953_133968005	0.13565	Hoxd11_Cdx1_Hoxc11	ENSMUST00000102553.4|Hmgn2|ENSMUSG00000003038.9|high mobility group nucleosomal binding domain 2
mm10_v2_chr1_-_105659008_105659008	0.133738	Hoxd11_Cdx1_Hoxc11	ENSMUST00000070699.8|Pign|ENSMUSG00000056536.8|phosphatidylinositol glycan anchor biosynthesis, class N
mm10_v2_chr3_+_96221111_96221134	0.129014	Hoxd11_Cdx1_Hoxc11	ENSMUST00000090781.6|Hist2h2be|ENSMUSG00000068854.6|histone cluster 2, H2be
mm10_v2_chrX_+_13632769_13632798	0.128976	Hoxd11_Cdx1_Hoxc11	ENSMUST00000096492.3|Gpr34|ENSMUSG00000040229.5|G protein-coupled receptor 34
mm10_v2_chr6_+_87981683_87981717	0.127437	Hoxd11_Cdx1_Hoxc11	ENSMUST00000143871.1|Gm5577|ENSMUSG00000084950.1|predicted gene 5577 	ENSMUST00000153372.1|Gm5577|ENSMUSG00000084950.1|predicted gene 5577
mm10_v2_chr19_-_56548013_56548046	0.124391	Hoxd11_Cdx1_Hoxc11	ENSMUST00000182059.1|Dclre1a|ENSMUSG00000025077.7|DNA cross-link repair 1A, PSO2 homolog (S. cerevisiae)
mm10_v2_chr2_-_79456750_79456761	0.123642	Hoxd11_Cdx1_Hoxc11	ENSMUST00000041099.4|Neurod1|ENSMUSG00000034701.9|neurogenic differentiation 1
mm10_v2_chr2_+_71786923_71786978	0.122468	Hoxd11_Cdx1_Hoxc11	ENSMUST00000112101.1|Itga6|ENSMUSG00000027111.9|integrin alpha 6 	ENSMUST00000028522.3|Itga6|ENSMUSG00000027111.9|integrin alpha 6
mm10_v2_chr1_-_74600564_74600622	0.122373	Hoxd11_Cdx1_Hoxc11	ENSMUST00000127938.1|Rnf25|ENSMUSG00000026171.6|ring finger protein 25 	ENSMUST00000154874.1|Rnf25|ENSMUSG00000026171.6|ring finger protein 25
mm10_v2_chr4_-_155086271_155086379	0.121293	Hoxd11_Cdx1_Hoxc11	ENSMUST00000030914.3|Rer1|ENSMUSG00000029048.3|RER1 retention in endoplasmic reticulum 1 homolog (S. cerevisiae)
mm10_v2_chr11_+_94211431_94211454	0.119706	Hoxd11_Cdx1_Hoxc11	ENSMUST00000041589.5|Tob1|ENSMUSG00000037573.5|transducer of ErbB-2.1
mm10_v2_chr11_+_115933282_115933282	0.118194	Hoxd11_Cdx1_Hoxc11	ENSMUST00000140991.1|Sap30bp|ENSMUSG00000020755.3|SAP30 binding protein
mm10_v2_chr11_-_110251736_110251776	0.118115	Hoxd11_Cdx1_Hoxc11	ENSMUST00000044003.7|Abca6|ENSMUSG00000044749.7|ATP-binding cassette, sub-family A (ABC1), member 6
mm10_v2_chrX_+_56779437_56779565	0.117841	Hoxd11_Cdx1_Hoxc11	ENSMUST00000114773.3|Fhl1|ENSMUSG00000023092.10|four and a half LIM domains 1
mm10_v2_chr10_-_30655859_30655868	0.114618	Hoxd11_Cdx1_Hoxc11	ENSMUST00000092610.4|Ncoa7|ENSMUSG00000039697.9|nuclear receptor coactivator 7
mm10_v2_chr1_+_58445151_58445307	0.113777	Hoxd11_Cdx1_Hoxc11	ENSMUST00000087521.6|Nif3l1|ENSMUSG00000026036.11|Ngg1 interacting factor 3-like 1 (S. pombe) 	ENSMUST00000114337.1|Nif3l1|ENSMUSG00000026036.11|Ngg1 interacting factor 3-like 1 (S. pombe)
mm10_v2_chr14_+_32085804_32085877	0.113272	Hoxd11_Cdx1_Hoxc11	ENSMUST00000170600.1|Oxnad1|ENSMUSG00000021906.7|oxidoreductase NAD-binding domain containing 1 	ENSMUST00000168986.1|Oxnad1|ENSMUSG00000021906.7|oxidoreductase NAD-binding domain containing 1 	ENSMUST00000169649.1|Oxnad1|ENSMUSG00000021906.7|oxidoreductase NAD-binding domain containing 1
mm10_v2_chr16_-_55838827_55838899	0.107006	Hoxd11_Cdx1_Hoxc11	ENSMUST00000096026.2|Nfkbiz|ENSMUSG00000035356.10|nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta 	ENSMUST00000036273.6|Nfkbiz|ENSMUSG00000035356.10|nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta 	ENSMUST00000114457.1|Nfkbiz|ENSMUSG00000035356.10|nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta
mm10_v2_chr4_+_5724304_5724357	0.103405	Hoxd11_Cdx1_Hoxc11	ENSMUST00000108380.1|Fam110b|ENSMUSG00000049119.8|family with sequence similarity 110, member B
mm10_v2_chr7_+_126649297_126649344	0.102367	Hoxd11_Cdx1_Hoxc11	ENSMUST00000032956.8|Ccdc101|ENSMUSG00000030714.8|coiled-coil domain containing 101
mm10_v2_chr7_-_126649556_126649580	0.100952	Hoxd11_Cdx1_Hoxc11	ENSMUST00000084587.1|2510046G10Rik|ENSMUSG00000066175.1|RIKEN cDNA 2510046G10 gene
mm10_v2_chr8_+_124023394_124023394	0.0961046	Hoxd11_Cdx1_Hoxc11	ENSMUST00000034457.8|Urb2|ENSMUSG00000031976.8|URB2 ribosome biogenesis 2 homolog (S. cerevisiae)
mm10_v2_chr14_+_66868850_66868850	0.0956645	Hoxd11_Cdx1_Hoxc11	ENSMUST00000100453.1|Gm5464|ENSMUSG00000075553.1|predicted gene 5464
mm10_v2_chr2_+_31759932_31759989	0.09151	Hoxd11_Cdx1_Hoxc11	ENSMUST00000028190.6|Abl1|ENSMUSG00000026842.10|c-abl oncogene 1, non-receptor tyrosine kinase
mm10_v2_chr8_-_70527645_70527783	0.090372	Hoxd11_Cdx1_Hoxc11	ENSMUST00000132867.1|Kxd1|ENSMUSG00000055553.10|KxDL motif containing 1
mm10_v2_chr19_+_60755947_60755987	0.086318	Hoxd11_Cdx1_Hoxc11	ENSMUST00000088237.4|Nanos1|ENSMUSG00000072437.3|nanos homolog 1 (Drosophila)
mm10_v2_chr17_+_35059035_35059130	0.0803546	Hoxd11_Cdx1_Hoxc11	ENSMUST00000007255.6|Ddah2|ENSMUSG00000007039.6|dimethylarginine dimethylaminohydrolase 2 	ENSMUST00000174493.1|Ddah2|ENSMUSG00000007039.6|dimethylarginine dimethylaminohydrolase 2
mm10_v2_chr11_+_98026918_98026931	0.0723727	Hoxd11_Cdx1_Hoxc11	ENSMUST00000017548.6|Rpl19|ENSMUSG00000017404.6|ribosomal protein L19
mm10_v2_chr6_-_124965485_124965543	0.068283	Hoxd11_Cdx1_Hoxc11	ENSMUST00000112439.2|Cops7a|ENSMUSG00000030127.9|COP9 (constitutive photomorphogenic) homolog, subunit 7a (Arabidopsis thaliana)
mm10_v2_chr13_-_91388079_91388090	0.0648145	Hoxd11_Cdx1_Hoxc11	ENSMUST00000181054.1|A830009L08Rik|ENSMUSG00000097182.1|RIKEN cDNA A830009L08 gene
mm10_v2_chr19_+_56548254_56548283	0.0636426	Hoxd11_Cdx1_Hoxc11	ENSMUST00000071423.5|Nhlrc2|ENSMUSG00000025078.8|NHL repeat containing 2
mm10_v2_chr9_+_121950988_121951044	0.0626766	Hoxd11_Cdx1_Hoxc11	ENSMUST00000043011.7|Fam198a|ENSMUSG00000038233.8|family with sequence similarity 198, member A
mm10_v2_chr5_+_29378604_29378699	0.061537	Hoxd11_Cdx1_Hoxc11	ENSMUST00000181005.1|4632411P08Rik|ENSMUSG00000097561.1|RIKEN cDNA 4632411P08 gene
mm10_v2_chr13_+_49582745_49582778	0.0602359	Hoxd11_Cdx1_Hoxc11	ENSMUST00000065494.7|Omd|ENSMUSG00000048368.8|osteomodulin
mm10_v2_chr11_-_97700327_97700497	0.0528284	Hoxd11_Cdx1_Hoxc11	ENSMUST00000018681.7|Pcgf2|ENSMUSG00000018537.10|polycomb group ring finger 2
mm10_v2_chr6_-_124965248_124965290	0.0475782	Hoxd11_Cdx1_Hoxc11	ENSMUST00000129976.1|Cops7a|ENSMUSG00000030127.9|COP9 (constitutive photomorphogenic) homolog, subunit 7a (Arabidopsis thaliana)
mm10_v2_chr2_-_26122769_26122838	0.0436776	Hoxd11_Cdx1_Hoxc11	ENSMUST00000140993.1|Nacc2|ENSMUSG00000026932.8|nucleus accumbens associated 2, BEN and BTB (POZ) domain containing 	ENSMUST00000028300.5|Nacc2|ENSMUSG00000026932.8|nucleus accumbens associated 2, BEN and BTB (POZ) domain containing
mm10_v2_chr15_-_79062866_79062941	0.040009	Hoxd11_Cdx1_Hoxc11	ENSMUST00000151889.1|Ankrd54|ENSMUSG00000033055.4|ankyrin repeat domain 54 	ENSMUST00000040676.4|Ankrd54|ENSMUSG00000033055.4|ankyrin repeat domain 54
mm10_v2_chr6_-_145047636_145047661	0.0367885	Hoxd11_Cdx1_Hoxc11	ENSMUST00000149769.1|Bcat1|ENSMUSG00000030268.11|branched chain aminotransferase 1, cytosolic
mm10_v2_chr6_-_8259098_8259173	0.0359407	Hoxd11_Cdx1_Hoxc11	ENSMUST00000012627.4|Rpa3|ENSMUSG00000012483.4|replication protein A3
mm10_v2_chr4_-_47057296_47057356	0.0334704	Hoxd11_Cdx1_Hoxc11	ENSMUST00000107747.1|Anks6|ENSMUSG00000066191.5|ankyrin repeat and sterile alpha motif domain containing 6 	ENSMUST00000084616.2|Anks6|ENSMUSG00000066191.5|ankyrin repeat and sterile alpha motif domain containing 6
mm10_v2_chr1_+_180109192_180109265	0.0322851	Hoxd11_Cdx1_Hoxc11	ENSMUST00000143176.1|Cdc42bpa|ENSMUSG00000026490.11|CDC42 binding protein kinase alpha 	ENSMUST00000135056.1|Cdc42bpa|ENSMUSG00000026490.11|CDC42 binding protein kinase alpha
mm10_v2_chr11_-_102316691_102316708	0.031666	Hoxd11_Cdx1_Hoxc11	ENSMUST00000107115.1|Ubtf|ENSMUSG00000020923.11|upstream binding transcription factor, RNA polymerase I 	ENSMUST00000128016.1|Ubtf|ENSMUSG00000020923.11|upstream binding transcription factor, RNA polymerase I
mm10_v2_chr18_+_36939178_36939318	0.0275929	Hoxd11_Cdx1_Hoxc11	ENSMUST00000115662.2|Pcdha2|ENSMUSG00000007440.8|protocadherin alpha 2
mm10_v2_chr5_-_73191848_73191922	0.0254364	Hoxd11_Cdx1_Hoxc11	ENSMUST00000176910.1|Fryl|ENSMUSG00000070733.7|furry homolog-like (Drosophila)
mm10_v2_chr8_-_47352348_47352367	0.0249763	Hoxd11_Cdx1_Hoxc11	ENSMUST00000110367.2|Stox2|ENSMUSG00000038143.8|storkhead box 2
mm10_v2_chr4_+_108479081_108479224	0.0241303	Hoxd11_Cdx1_Hoxc11	ENSMUST00000155068.1|Zcchc11|ENSMUSG00000034610.8|zinc finger, CCHC domain containing 11
mm10_v2_chr3_+_103575231_103575255	0.0230295	Hoxd11_Cdx1_Hoxc11	ENSMUST00000121834.1|Syt6|ENSMUSG00000027849.12|synaptotagmin VI
mm10_v2_chr5_+_32611171_32611245	0.0169558	Hoxd11_Cdx1_Hoxc11	ENSMUST00000072311.6|Yes1|ENSMUSG00000014932.9|Yamaguchi sarcoma viral (v-yes) oncogene homolog 1 	ENSMUST00000168707.2|Yes1|ENSMUSG00000014932.9|Yamaguchi sarcoma viral (v-yes) oncogene homolog 1
mm10_v2_chr10_-_25200110_25200178	0.0157175	Hoxd11_Cdx1_Hoxc11	ENSMUST00000100012.2|Akap7|ENSMUSG00000039166.9|A kinase (PRKA) anchor protein 7
mm10_v2_chr10_-_39122277_39122314	0.0139503	Hoxd11_Cdx1_Hoxc11	ENSMUST00000136546.1|Fam229b|ENSMUSG00000051736.2|family with sequence similarity 229, member B
mm10_v2_chr2_+_119208975_119209029	0.00962584	Hoxd11_Cdx1_Hoxc11	ENSMUST00000102519.4|Zfyve19|ENSMUSG00000068580.5|zinc finger, FYVE domain containing 19
mm10_v2_chr3_-_144760841_144760868	0.00749046	Hoxd11_Cdx1_Hoxc11	ENSMUST00000059091.5|Clca1|ENSMUSG00000056025.6|chloride channel calcium activated 1
mm10_v2_chr3_+_5218546_5218561	0.00614324	Hoxd11_Cdx1_Hoxc11	ENSMUST00000026284.6|Zfhx4|ENSMUSG00000025255.12|zinc finger homeodomain 4
mm10_v2_chr4_+_102254739_102254761	0.00308063	Hoxd11_Cdx1_Hoxc11	ENSMUST00000106907.2|Pde4b|ENSMUSG00000028525.10|phosphodiesterase 4B, cAMP specific
mm10_v2_chr7_+_30565410_30565432	0.00240545	Hoxd11_Cdx1_Hoxc11	ENSMUST00000043850.7|Igflr1|ENSMUSG00000036826.8|IGF-like family receptor 1
mm10_v2_chr6_+_135065651_135065682	0.00205576	Hoxd11_Cdx1_Hoxc11	ENSMUST00000050104.7|Gprc5a|ENSMUSG00000046733.7|G protein-coupled receptor, family C, group 5, member A
mm10_v2_chr3_-_89960562_89960629	0.000986125	Hoxd11_Cdx1_Hoxc11	ENSMUST00000069805.7|Atp8b2|ENSMUSG00000060671.6|ATPase, class I, type 8B, member 2
