mm10_v2_chr15_+_44787746_44787782	0.576511	Msx3	ENSMUST00000181839.1|2310069G16Rik|ENSMUSG00000097102.1|RIKEN cDNA 2310069G16 gene
mm10_v2_chr4_+_102254739_102254761	0.406397	Msx3	ENSMUST00000106907.2|Pde4b|ENSMUSG00000028525.10|phosphodiesterase 4B, cAMP specific
mm10_v2_chr3_-_116253467_116253484	0.396821	Msx3	ENSMUST00000090473.5|Gpr88|ENSMUSG00000068696.5|G-protein coupled receptor 88
mm10_v2_chr2_-_45117349_45117395	0.390433	Msx3	ENSMUST00000176438.2|Zeb2|ENSMUSG00000026872.10|zinc finger E-box binding homeobox 2
mm10_v2_chr4_-_14621805_14621819	0.381885	Msx3	ENSMUST00000042221.7|Slc26a7|ENSMUSG00000040569.7|solute carrier family 26, member 7
mm10_v2_chr2_+_125136692_125136769	0.344437	Msx3	ENSMUST00000099452.2|Ctxn2|ENSMUSG00000074872.2|cortexin 2
mm10_v2_chr2_-_160619971_160619971	0.280981	Msx3	ENSMUST00000109473.1|Gm14221|ENSMUSG00000078956.2|predicted gene 14221
mm10_v2_chr18_+_57468478_57468541	0.279924	Msx3	ENSMUST00000091892.2|Ctxn3|ENSMUSG00000069372.2|cortexin 3
mm10_v2_chr10_+_81257277_81257309	0.272569	Msx3	ENSMUST00000117488.1|Matk|ENSMUSG00000004933.11|megakaryocyte-associated tyrosine kinase 	ENSMUST00000105328.3|Matk|ENSMUSG00000004933.11|megakaryocyte-associated tyrosine kinase 	ENSMUST00000121205.1|Matk|ENSMUSG00000004933.11|megakaryocyte-associated tyrosine kinase
mm10_v2_chr4_+_94739276_94739300	0.249692	Msx3	ENSMUST00000073939.6|Tek|ENSMUSG00000006386.9|endothelial-specific receptor tyrosine kinase 	ENSMUST00000102798.1|Tek|ENSMUSG00000006386.9|endothelial-specific receptor tyrosine kinase
mm10_v2_chr2_-_33086366_33086447	0.235783	Msx3	ENSMUST00000049618.2|Garnl3|ENSMUSG00000038860.9|GTPase activating RANGAP domain-like 3
mm10_v2_chr2_-_33087169_33087253	0.216346	Msx3	ENSMUST00000102810.3|Garnl3|ENSMUSG00000038860.9|GTPase activating RANGAP domain-like 3
mm10_v2_chr9_-_53975246_53975348	0.20187	Msx3	ENSMUST00000048409.7|Elmod1|ENSMUSG00000041986.9|ELMO/CED-12 domain containing 1
mm10_v2_chr7_-_127895578_127895647	0.155356	Msx3	ENSMUST00000033074.6|Vkorc1|ENSMUSG00000096145.1|vitamin K epoxide reductase complex, subunit 1
mm10_v2_chr13_+_83732438_83732566	0.153813	Msx3	ENSMUST00000182701.1|C130071C03Rik|ENSMUSG00000050334.6|RIKEN cDNA C130071C03 gene
mm10_v2_chr12_+_102128718_102128739	0.152967	Msx3	ENSMUST00000159329.1|Slc24a4|ENSMUSG00000041771.7|solute carrier family 24 (sodium/potassium/calcium exchanger), member 4
mm10_v2_chr3_+_66985680_66985692	0.150804	Msx3	ENSMUST00000065047.6|Rsrc1|ENSMUSG00000034544.11|arginine/serine-rich coiled-coil 1
mm10_v2_chr1_+_104768510_104768529	0.149386	Msx3	ENSMUST00000062528.8|Cdh20|ENSMUSG00000050840.8|cadherin 20
mm10_v2_chr4_-_14621494_14621506	0.139333	Msx3	ENSMUST00000149633.1|Slc26a7|ENSMUSG00000040569.7|solute carrier family 26, member 7
mm10_v2_chr11_+_53433299_53433357	0.138227	Msx3	ENSMUST00000018382.6|Gdf9|ENSMUSG00000018238.6|growth differentiation factor 9
mm10_v2_chr15_+_82252397_82252475	0.134201	Msx3	ENSMUST00000136948.1|1500009C09Rik|ENSMUSG00000068099.4|RIKEN cDNA 1500009C09 gene
mm10_v2_chr12_-_71136611_71136701	0.131635	Msx3	ENSMUST00000021486.8|Timm9|ENSMUSG00000021079.9|translocase of inner mitochondrial membrane 9 	ENSMUST00000166120.1|Timm9|ENSMUSG00000021079.9|translocase of inner mitochondrial membrane 9
mm10_v2_chrM_+_7005_7022	0.12963	Msx3	ENSMUST00000082405.1|mt-Co2|ENSMUSG00000064354.1|mitochondrially encoded cytochrome c oxidase II
mm10_v2_chr2_-_168767029_168767104	0.1288	Msx3	ENSMUST00000075044.3|Sall4|ENSMUSG00000027547.11|sal-like 4 (Drosophila)
mm10_v2_chrX_+_101449078_101449089	0.122557	Msx3	ENSMUST00000033674.5|Itgb1bp2|ENSMUSG00000031312.5|integrin beta 1 binding protein 2
mm10_v2_chr4_-_14621669_14621786	0.116076	Msx3	ENSMUST00000143105.1|Slc26a7|ENSMUSG00000040569.7|solute carrier family 26, member 7
mm10_v2_chr3_+_66985700_66985740	0.113616	Msx3	ENSMUST00000046542.6|Rsrc1|ENSMUSG00000034544.11|arginine/serine-rich coiled-coil 1 	ENSMUST00000162693.1|Rsrc1|ENSMUSG00000034544.11|arginine/serine-rich coiled-coil 1
mm10_v2_chr3_+_66985647_66985678	0.113168	Msx3	ENSMUST00000162362.1|Rsrc1|ENSMUSG00000034544.11|arginine/serine-rich coiled-coil 1 	ENSMUST00000065074.7|Rsrc1|ENSMUSG00000034544.11|arginine/serine-rich coiled-coil 1
mm10_v2_chrM_+_9452_9468	0.10213	Msx3	ENSMUST00000082411.1|mt-Nd3|ENSMUSG00000064360.1|mitochondrially encoded NADH dehydrogenase 3
mm10_v2_chr17_+_56613392_56613425	0.101454	Msx3	ENSMUST00000080492.5|Rpl36|ENSMUSG00000057863.5|ribosomal protein L36
mm10_v2_chr19_+_5474681_5474775	0.0973255	Msx3	ENSMUST00000165485.1|Efemp2|ENSMUSG00000024909.8|epidermal growth factor-containing fibulin-like extracellular matrix protein 2 	ENSMUST00000166253.1|Efemp2|ENSMUSG00000024909.8|epidermal growth factor-containing fibulin-like extracellular matrix protein 2 	ENSMUST00000167371.1|Efemp2|ENSMUSG00000024909.8|epidermal growth factor-containing fibulin-like extracellular matrix protein 2 	ENSMUST00000167855.1|Efemp2|ENSMUSG00000024909.8|epidermal growth factor-containing fibulin-like extracellular matrix protein 2 	ENSMUST00000070118.7|Efemp2|ENSMUSG00000024909.8|epidermal growth factor-containing fibulin-like extracellular matrix protein 2
mm10_v2_chr7_+_101896817_101896961	0.0957514	Msx3	ENSMUST00000143835.1|Anapc15|ENSMUSG00000030649.11|anaphase prompoting complex C subunit 15
mm10_v2_chrX_+_107255878_107256064	0.0919786	Msx3	ENSMUST00000101294.2|Gpr174|ENSMUSG00000073008.5|G protein-coupled receptor 174 	ENSMUST00000118820.1|Gpr174|ENSMUSG00000073008.5|G protein-coupled receptor 174 	ENSMUST00000120971.1|Gpr174|ENSMUSG00000073008.5|G protein-coupled receptor 174
mm10_v2_chr8_+_107031218_107031229	0.0913388	Msx3	ENSMUST00000034388.9|Vps4a|ENSMUSG00000031913.9|vacuolar protein sorting 4a (yeast)
mm10_v2_chr7_+_101896340_101896431	0.087677	Msx3	ENSMUST00000035395.7|Anapc15|ENSMUSG00000030649.11|anaphase prompoting complex C subunit 15 	ENSMUST00000106973.1|Anapc15|ENSMUSG00000030649.11|anaphase prompoting complex C subunit 15 	ENSMUST00000144207.1|Anapc15|ENSMUSG00000030649.11|anaphase prompoting complex C subunit 15
mm10_v2_chr3_+_106034661_106034692	0.0843447	Msx3	ENSMUST00000170669.2|Gm4540|ENSMUSG00000092072.2|predicted gene 4540
mm10_v2_chr17_-_24527830_24527884	0.0817647	Msx3	ENSMUST00000176353.1|Traf7|ENSMUSG00000052752.9|TNF receptor-associated factor 7 	ENSMUST00000176237.1|Traf7|ENSMUSG00000052752.9|TNF receptor-associated factor 7
mm10_v2_chr11_+_109543694_109543754	0.0796948	Msx3	ENSMUST00000106696.1|Arsg|ENSMUSG00000020604.7|arylsulfatase G
mm10_v2_chr3_-_41742471_41742548	0.0775821	Msx3	ENSMUST00000026866.8|Sclt1|ENSMUSG00000059834.6|sodium channel and clathrin linker 1
mm10_v2_chr17_-_24527925_24527938	0.0768242	Msx3	ENSMUST00000176652.1|Traf7|ENSMUSG00000052752.9|TNF receptor-associated factor 7
mm10_v2_chrX_-_60893430_60893440	0.0757622	Msx3	ENSMUST00000135107.2|Sox3|ENSMUSG00000045179.8|SRY-box containing gene 3
mm10_v2_chr11_+_116843278_116843278	0.0747468	Msx3	ENSMUST00000106370.3|Mettl23|ENSMUSG00000090266.4|methyltransferase like 23
mm10_v2_chr2_-_174346712_174346712	0.071298	Msx3	ENSMUST00000168292.1|Gm20721|ENSMUSG00000090625.1|predicted gene, 20721
mm10_v2_chr2_-_168767136_168767201	0.0685826	Msx3	ENSMUST00000029061.5|Sall4|ENSMUSG00000027547.11|sal-like 4 (Drosophila) 	ENSMUST00000103074.1|Sall4|ENSMUSG00000027547.11|sal-like 4 (Drosophila)
mm10_v2_chr2_+_163658370_163658510	0.0677171	Msx3	ENSMUST00000164399.1|Pkig|ENSMUSG00000035268.8|protein kinase inhibitor, gamma 	ENSMUST00000064703.6|Pkig|ENSMUSG00000035268.8|protein kinase inhibitor, gamma 	ENSMUST00000099105.2|Pkig|ENSMUSG00000035268.8|protein kinase inhibitor, gamma 	ENSMUST00000152418.1|Pkig|ENSMUSG00000035268.8|protein kinase inhibitor, gamma 	ENSMUST00000126182.1|Pkig|ENSMUSG00000035268.8|protein kinase inhibitor, gamma 	ENSMUST00000131228.1|Pkig|ENSMUSG00000035268.8|protein kinase inhibitor, gamma
mm10_v2_chr10_+_88379127_88379169	0.0630834	Msx3	ENSMUST00000127615.1|Gnptab|ENSMUSG00000035311.10|N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits
mm10_v2_chr7_+_103550368_103550368	0.0623822	Msx3	ENSMUST00000106888.1|Olfr613|ENSMUSG00000078624.2|olfactory receptor 613
mm10_v2_chr13_+_67863324_67863328	0.0598736	Msx3	ENSMUST00000078471.5|BC048507|ENSMUSG00000064063.5|cDNA sequence BC048507
mm10_v2_chr10_+_88379217_88379299	0.059566	Msx3	ENSMUST00000130301.1|Gnptab|ENSMUSG00000035311.10|N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits 	ENSMUST00000020251.8|Gnptab|ENSMUSG00000035311.10|N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits
mm10_v2_chrM_+_9870_9885	0.0583398	Msx3	ENSMUST00000084013.1|mt-Nd4l|ENSMUSG00000065947.3|mitochondrially encoded NADH dehydrogenase 4L
mm10_v2_chr7_+_3645267_3645352	0.0581125	Msx3	ENSMUST00000038913.9|Cnot3|ENSMUSG00000035632.10|CCR4-NOT transcription complex, subunit 3
mm10_v2_chr18_+_37819543_37819570	0.0574617	Msx3	ENSMUST00000055935.5|Pcdhga9|ENSMUSG00000023036.8|protocadherin gamma subfamily A, 9
mm10_v2_chr10_+_39612934_39612934	0.0549843	Msx3	ENSMUST00000019987.6|Traf3ip2|ENSMUSG00000019842.6|TRAF3 interacting protein 2
mm10_v2_chr11_+_70018421_70018484	0.0509155	Msx3	ENSMUST00000108588.1|Dlg4|ENSMUSG00000020886.10|discs, large homolog 4 (Drosophila)
mm10_v2_chr6_+_134640940_134641097	0.0507593	Msx3	ENSMUST00000062755.8|Loh12cr1|ENSMUSG00000042992.9|loss of heterozygosity, 12, chromosomal region 1 homolog (human)
mm10_v2_chr3_+_41742615_41742725	0.0479801	Msx3	ENSMUST00000146165.1|D3Ertd751e|ENSMUSG00000025766.8|DNA segment, Chr 3, ERATO Doi 751, expressed 	ENSMUST00000119572.1|D3Ertd751e|ENSMUSG00000025766.8|DNA segment, Chr 3, ERATO Doi 751, expressed 	ENSMUST00000108065.2|D3Ertd751e|ENSMUSG00000025766.8|DNA segment, Chr 3, ERATO Doi 751, expressed 	ENSMUST00000120167.1|D3Ertd751e|ENSMUSG00000025766.8|DNA segment, Chr 3, ERATO Doi 751, expressed 	ENSMUST00000026867.7|D3Ertd751e|ENSMUSG00000025766.8|DNA segment, Chr 3, ERATO Doi 751, expressed 	ENSMUST00000026868.7|D3Ertd751e|ENSMUSG00000025766.8|DNA segment, Chr 3, ERATO Doi 751, expressed
mm10_v2_chr1_+_34439851_34439910	0.0449026	Msx3	ENSMUST00000027303.7|Imp4|ENSMUSG00000026127.7|IMP4, U3 small nucleolar ribonucleoprotein, homolog (yeast)
mm10_v2_chr17_+_21383725_21383766	0.043123	Msx3	ENSMUST00000056107.4|Zfp677|ENSMUSG00000062743.3|zinc finger protein 677 	ENSMUST00000162659.1|Zfp677|ENSMUSG00000062743.3|zinc finger protein 677
mm10_v2_chr3_+_83055516_83055565	0.0424307	Msx3	ENSMUST00000150268.1|Plrg1|ENSMUSG00000027998.5|pleiotropic regulator 1, PRL1 homolog (Arabidopsis) 	ENSMUST00000122128.1|Plrg1|ENSMUSG00000027998.5|pleiotropic regulator 1, PRL1 homolog (Arabidopsis)
mm10_v2_chr1_-_127840290_127840290	0.0424054	Msx3	ENSMUST00000061512.2|Map3k19|ENSMUSG00000051590.2|mitogen-activated protein kinase kinase kinase 19
mm10_v2_chr10_-_76110956_76110962	0.0315	Msx3	ENSMUST00000120757.1|Slc5a4b|ENSMUSG00000020226.9|solute carrier family 5 (neutral amino acid transporters, system A), member 4b
mm10_v2_chr3_+_94837533_94837567	0.0303123	Msx3	ENSMUST00000107270.2|Pogz|ENSMUSG00000038902.8|pogo transposable element with ZNF domain
mm10_v2_chr12_+_72441933_72441970	0.0265069	Msx3	ENSMUST00000161284.1|Lrrc9|ENSMUSG00000021090.9|leucine rich repeat containing 9
mm10_v2_chr16_+_49699198_49699304	0.0248306	Msx3	ENSMUST00000046777.4|Ift57|ENSMUSG00000032965.4|intraflagellar transport 57 	ENSMUST00000142682.1|Ift57|ENSMUSG00000032965.4|intraflagellar transport 57
mm10_v2_chr3_+_66985947_66985986	0.0247116	Msx3	ENSMUST00000161726.1|Rsrc1|ENSMUSG00000034544.11|arginine/serine-rich coiled-coil 1 	ENSMUST00000160504.1|Rsrc1|ENSMUSG00000034544.11|arginine/serine-rich coiled-coil 1
mm10_v2_chr13_-_29984219_29984353	0.0203754	Msx3	ENSMUST00000146092.1|E2f3|ENSMUSG00000016477.11|E2F transcription factor 3
mm10_v2_chrX_+_16619698_16619758	0.0197269	Msx3	ENSMUST00000026013.5|Maoa|ENSMUSG00000025037.6|monoamine oxidase A
mm10_v2_chr4_+_134930898_134930997	0.018886	Msx3	ENSMUST00000030622.2|Syf2|ENSMUSG00000028821.2|SYF2 homolog, RNA splicing factor (S. cerevisiae)
mm10_v2_chr12_+_72441852_72441866	0.0109881	Msx3	ENSMUST00000162159.1|Lrrc9|ENSMUSG00000021090.9|leucine rich repeat containing 9
mm10_v2_chr3_+_32515295_32515295	0.01084	Msx3	ENSMUST00000029203.7|Zfp639|ENSMUSG00000027667.8|zinc finger protein 639
mm10_v2_chr15_+_38661904_38661981	0.00944442	Msx3	ENSMUST00000022904.6|Atp6v1c1|ENSMUSG00000022295.7|ATPase, H+ transporting, lysosomal V1 subunit C1
mm10_v2_chr9_+_44398176_44398176	0.00324179	Msx3	ENSMUST00000165839.1|Slc37a4|ENSMUSG00000032114.8|solute carrier family 37 (glucose-6-phosphate transporter), member 4
mm10_v2_chr3_+_138374121_138374163	0.00255156	Msx3	ENSMUST00000171054.1|Adh6-ps1|ENSMUSG00000090306.1|alcohol dehydrogenase 6 (class V), pseudogene 1
mm10_v2_chr9_+_72806874_72806874	0.00106364	Msx3	ENSMUST00000055535.8|Prtg|ENSMUSG00000036030.9|protogenin homolog (Gallus gallus)
