mm10_v2_chrY_-_1245685_1245752	0.728539	Nanog	ENSMUST00000143286.1|Uty|ENSMUSG00000068457.8|ubiquitously transcribed tetratricopeptide repeat gene, Y chromosome 	ENSMUST00000137048.1|Uty|ENSMUSG00000068457.8|ubiquitously transcribed tetratricopeptide repeat gene, Y chromosome 	ENSMUST00000069309.7|Uty|ENSMUSG00000068457.8|ubiquitously transcribed tetratricopeptide repeat gene, Y chromosome 	ENSMUST00000139365.1|Uty|ENSMUSG00000068457.8|ubiquitously transcribed tetratricopeptide repeat gene, Y chromosome
mm10_v2_chr13_-_41273977_41273977	0.661964	Nanog	ENSMUST00000163881.1|Gm17364|ENSMUSG00000090853.1|predicted gene, 17364
mm10_v2_chr17_+_21691860_21691860	0.632404	Nanog	ENSMUST00000072133.4|Gm10226|ENSMUSG00000067929.3|predicted gene 10226
mm10_v2_chr12_+_72441933_72441970	0.602795	Nanog	ENSMUST00000161284.1|Lrrc9|ENSMUSG00000021090.9|leucine rich repeat containing 9
mm10_v2_chr1_-_158814469_158814469	0.552817	Nanog	ENSMUST00000161589.2|Pappa2|ENSMUSG00000073530.5|pappalysin 2
mm10_v2_chr12_+_72441852_72441866	0.544103	Nanog	ENSMUST00000162159.1|Lrrc9|ENSMUSG00000021090.9|leucine rich repeat containing 9
mm10_v2_chr1_-_52490736_52490736	0.511609	Nanog	ENSMUST00000170269.1|Nab1|ENSMUSG00000002881.8|Ngfi-A binding protein 1
mm10_v2_chr10_+_58394361_58394380	0.506921	Nanog	ENSMUST00000020077.4|Lims1|ENSMUSG00000019920.11|LIM and senescent cell antigen-like domains 1
mm10_v2_chr10_+_58394381_58394395	0.505245	Nanog	ENSMUST00000105468.1|Lims1|ENSMUSG00000019920.11|LIM and senescent cell antigen-like domains 1
mm10_v2_chr2_+_134786154_134786170	0.43071	Nanog	ENSMUST00000110116.1|Plcb1|ENSMUSG00000051177.10|phospholipase C, beta 1
mm10_v2_chr13_-_89742244_89742334	0.395263	Nanog	ENSMUST00000109543.2|Vcan|ENSMUSG00000021614.10|versican 	ENSMUST00000159337.1|Vcan|ENSMUSG00000021614.10|versican 	ENSMUST00000159910.1|Vcan|ENSMUSG00000021614.10|versican 	ENSMUST00000109544.2|Vcan|ENSMUSG00000021614.10|versican
mm10_v2_chr9_-_15357692_15357788	0.387648	Nanog	ENSMUST00000098979.3|5830418K08Rik|ENSMUSG00000046111.10|RIKEN cDNA 5830418K08 gene 	ENSMUST00000161132.1|5830418K08Rik|ENSMUSG00000046111.10|RIKEN cDNA 5830418K08 gene
mm10_v2_chr9_-_52168111_52168111	0.376491	Nanog	ENSMUST00000165519.1|Zc3h12c|ENSMUSG00000035164.7|zinc finger CCCH type containing 12C
mm10_v2_chr13_-_89742490_89742515	0.352692	Nanog	ENSMUST00000109546.2|Vcan|ENSMUSG00000021614.10|versican
mm10_v2_chr7_+_112742025_112742060	0.344092	Nanog	ENSMUST00000164363.1|Tead1|ENSMUSG00000055320.10|TEA domain family member 1
mm10_v2_chr9_+_92309362_92309386	0.335182	Nanog	ENSMUST00000098477.1|1700057G04Rik|ENSMUSG00000074139.2|RIKEN cDNA 1700057G04 gene 	ENSMUST00000150594.1|1700057G04Rik|ENSMUSG00000074139.2|RIKEN cDNA 1700057G04 gene
mm10_v2_chr7_+_113514085_113514109	0.311237	Nanog	ENSMUST00000122890.1|Far1|ENSMUSG00000030759.10|fatty acyl CoA reductase 1
mm10_v2_chr7_+_59228743_59228769	0.305178	Nanog	ENSMUST00000107537.1|Ube3a|ENSMUSG00000025326.8|ubiquitin protein ligase E3A
mm10_v2_chr2_+_29060239_29060287	0.292328	Nanog	ENSMUST00000100237.3|Ttf1|ENSMUSG00000026803.11|transcription termination factor, RNA polymerase I
mm10_v2_chr7_-_115846080_115846112	0.29085	Nanog	ENSMUST00000166207.1|Sox6|ENSMUSG00000051910.7|SRY-box containing gene 6
mm10_v2_chr14_-_78536762_78536851	0.287546	Nanog	ENSMUST00000123853.1|Akap11|ENSMUSG00000022016.9|A kinase (PRKA) anchor protein 11
mm10_v2_chr19_-_32196393_32196428	0.281137	Nanog	ENSMUST00000151822.1|Sgms1|ENSMUSG00000040451.11|sphingomyelin synthase 1
mm10_v2_chr10_+_39612934_39612934	0.274976	Nanog	ENSMUST00000019987.6|Traf3ip2|ENSMUSG00000019842.6|TRAF3 interacting protein 2
mm10_v2_chr10_-_99126321_99126321	0.268699	Nanog	ENSMUST00000060761.5|Phxr2|ENSMUSG00000055108.5|per-hexamer repeat gene 2
mm10_v2_chr16_-_3872378_3872411	0.265023	Nanog	ENSMUST00000090522.4|Zfp597|ENSMUSG00000039789.7|zinc finger protein 597
mm10_v2_chr7_-_6011010_6011010	0.261594	Nanog	ENSMUST00000086338.1|Vmn1r65|ENSMUSG00000066850.1|vomeronasal 1 receptor 65
mm10_v2_chr15_+_98167806_98167873	0.256798	Nanog	ENSMUST00000031914.4|AI836003|ENSMUSG00000029875.4|expressed sequence AI836003
mm10_v2_chrX_-_135009185_135009225	0.256418	Nanog	ENSMUST00000113185.2|Zmat1|ENSMUSG00000052676.10|zinc finger, matrin type 1 	ENSMUST00000064659.5|Zmat1|ENSMUSG00000052676.10|zinc finger, matrin type 1
mm10_v2_chr3_+_114030532_114030571	0.25115	Nanog	ENSMUST00000123619.1|Col11a1|ENSMUSG00000027966.13|collagen, type XI, alpha 1 	ENSMUST00000092155.5|Col11a1|ENSMUSG00000027966.13|collagen, type XI, alpha 1
mm10_v2_chr1_-_60566708_60566769	0.250849	Nanog	ENSMUST00000027168.5|Raph1|ENSMUSG00000026014.9|Ras association (RalGDS/AF-6) and pleckstrin homology domains 1 	ENSMUST00000090293.4|Raph1|ENSMUSG00000026014.9|Ras association (RalGDS/AF-6) and pleckstrin homology domains 1 	ENSMUST00000140485.1|Raph1|ENSMUSG00000026014.9|Ras association (RalGDS/AF-6) and pleckstrin homology domains 1
mm10_v2_chr10_-_81364846_81364859	0.247492	Nanog	ENSMUST00000131736.1|4930404N11Rik|ENSMUSG00000020234.4|RIKEN cDNA 4930404N11 gene
mm10_v2_chr14_-_26971232_26971232	0.2433	Nanog	ENSMUST00000036570.4|Appl1|ENSMUSG00000040760.4|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1
mm10_v2_chr1_+_174501796_174501843	0.243013	Nanog	ENSMUST00000030039.7|Fmn2|ENSMUSG00000028354.8|formin 2
mm10_v2_chr11_-_40733373_40733442	0.242027	Nanog	ENSMUST00000020579.8|Hmmr|ENSMUSG00000020330.10|hyaluronan mediated motility receptor (RHAMM)
mm10_v2_chr13_+_24943144_24943164	0.24179	Nanog	ENSMUST00000021773.5|Gpld1|ENSMUSG00000021340.6|glycosylphosphatidylinositol specific phospholipase D1
mm10_v2_chr10_+_69785507_69785525	0.235634	Nanog	ENSMUST00000182993.1|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial
mm10_v2_chr7_-_6730412_6730431	0.22706	Nanog	ENSMUST00000051209.4|Peg3|ENSMUSG00000002265.9|paternally expressed 3
mm10_v2_chr3_+_88965812_88965812	0.223852	Nanog	ENSMUST00000090933.4|Ash1l|ENSMUSG00000028053.7|ash1 (absent, small, or homeotic)-like (Drosophila)
mm10_v2_chr11_-_109298066_109298079	0.223799	Nanog	ENSMUST00000106706.1|Rgs9|ENSMUSG00000020599.7|regulator of G-protein signaling 9
mm10_v2_chr1_+_135584773_135584773	0.22092	Nanog	ENSMUST00000067468.4|Gm4793|ENSMUSG00000054412.4|predicted gene 4793
mm10_v2_chr13_-_47106176_47106206	0.219871	Nanog	ENSMUST00000021807.6|Dek|ENSMUSG00000021377.8|DEK oncogene (DNA binding) 	ENSMUST00000135278.1|Dek|ENSMUSG00000021377.8|DEK oncogene (DNA binding)
mm10_v2_chr3_+_37312514_37312575	0.214576	Nanog	ENSMUST00000057975.7|Bbs12|ENSMUSG00000051444.9|Bardet-Biedl syndrome 12 (human) 	ENSMUST00000108121.3|Bbs12|ENSMUSG00000051444.9|Bardet-Biedl syndrome 12 (human)
mm10_v2_chr12_+_109549157_109549301	0.214238	Nanog	ENSMUST00000128458.1|Meg3|ENSMUSG00000021268.11|maternally expressed 3 	ENSMUST00000150851.1|Meg3|ENSMUSG00000021268.11|maternally expressed 3
mm10_v2_chr13_-_9765137_9765321	0.210332	Nanog	ENSMUST00000062658.8|Zmynd11|ENSMUSG00000021156.10|zinc finger, MYND domain containing 11 	ENSMUST00000130151.1|Zmynd11|ENSMUSG00000021156.10|zinc finger, MYND domain containing 11 	ENSMUST00000110636.1|Zmynd11|ENSMUSG00000021156.10|zinc finger, MYND domain containing 11 	ENSMUST00000152725.1|Zmynd11|ENSMUSG00000021156.10|zinc finger, MYND domain containing 11
mm10_v2_chr10_-_109010955_109010983	0.210208	Nanog	ENSMUST00000105276.1|Syt1|ENSMUSG00000035864.8|synaptotagmin I 	ENSMUST00000064054.7|Syt1|ENSMUSG00000035864.8|synaptotagmin I
mm10_v2_chr6_-_67037399_67037417	0.20739	Nanog	ENSMUST00000043098.6|Gadd45a|ENSMUSG00000036390.6|growth arrest and DNA-damage-inducible 45 alpha
mm10_v2_chr4_-_129261394_129261406	0.205871	Nanog	ENSMUST00000145261.1|C77080|ENSMUSG00000050390.6|expressed sequence C77080
mm10_v2_chr12_-_101958148_101958246	0.205709	Nanog	ENSMUST00000159883.1|Atxn3|ENSMUSG00000021189.5|ataxin 3 	ENSMUST00000160251.1|Atxn3|ENSMUSG00000021189.5|ataxin 3 	ENSMUST00000161011.1|Atxn3|ENSMUSG00000021189.5|ataxin 3 	ENSMUST00000021606.5|Atxn3|ENSMUSG00000021189.5|ataxin 3
mm10_v2_chr19_-_56822161_56822220	0.204561	Nanog	ENSMUST00000118592.1|A630007B06Rik|ENSMUSG00000035173.8|RIKEN cDNA A630007B06 gene
mm10_v2_chr1_+_89454769_89454885	0.203724	Nanog	ENSMUST00000027521.8|Agap1|ENSMUSG00000055013.8|ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 	ENSMUST00000074945.5|Agap1|ENSMUSG00000055013.8|ArfGAP with GTPase domain, ankyrin repeat and PH domain 1
mm10_v2_chr11_-_23895208_23895280	0.201241	Nanog	ENSMUST00000102863.2|Papolg|ENSMUSG00000020273.7|poly(A) polymerase gamma 	ENSMUST00000020513.3|Papolg|ENSMUSG00000020273.7|poly(A) polymerase gamma
mm10_v2_chr1_+_146497614_146497707	0.200327	Nanog	ENSMUST00000132847.1|Brinp3|ENSMUSG00000035131.8|bone morphogenetic protein/retinoic acid inducible neural specific 3 	ENSMUST00000166814.1|Brinp3|ENSMUSG00000035131.8|bone morphogenetic protein/retinoic acid inducible neural specific 3
mm10_v2_chr3_-_146499721_146499803	0.197098	Nanog	ENSMUST00000029839.4|Spata1|ENSMUSG00000028188.7|spermatogenesis associated 1
mm10_v2_chr7_-_98656530_98656600	0.196494	Nanog	ENSMUST00000038359.4|2210018M11Rik|ENSMUSG00000035401.8|RIKEN cDNA 2210018M11 gene
mm10_v2_chr9_-_7184440_7184518	0.193981	Nanog	ENSMUST00000140466.1|Dync2h1|ENSMUSG00000047193.9|dynein cytoplasmic 2 heavy chain 1
mm10_v2_chr16_+_87454976_87454987	0.190562	Nanog	ENSMUST00000119504.1|Usp16|ENSMUSG00000025616.8|ubiquitin specific peptidase 16 	ENSMUST00000131356.1|Usp16|ENSMUSG00000025616.8|ubiquitin specific peptidase 16
mm10_v2_chr4_+_43059028_43059080	0.18814	Nanog	ENSMUST00000163653.1|Unc13b|ENSMUSG00000028456.11|unc-13 homolog B (C. elegans) 	ENSMUST00000107952.2|Unc13b|ENSMUSG00000028456.11|unc-13 homolog B (C. elegans) 	ENSMUST00000107953.2|Unc13b|ENSMUSG00000028456.11|unc-13 homolog B (C. elegans)
mm10_v2_chr8_+_84415348_84415392	0.181008	Nanog	ENSMUST00000121390.1|Cacna1a|ENSMUSG00000034656.10|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit 	ENSMUST00000122053.1|Cacna1a|ENSMUSG00000034656.10|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit
mm10_v2_chr17_-_32800938_32800938	0.180468	Nanog	ENSMUST00000080905.6|Zfp811|ENSMUSG00000055202.7|zinc finger protein 811
mm10_v2_chr2_-_37703845_37703885	0.180315	Nanog	ENSMUST00000155237.1|Strbp|ENSMUSG00000026915.10|spermatid perinuclear RNA binding protein
mm10_v2_chr11_+_44617310_44617336	0.178446	Nanog	ENSMUST00000081265.5|Ebf1|ENSMUSG00000057098.8|early B cell factor 1 	ENSMUST00000101326.3|Ebf1|ENSMUSG00000057098.8|early B cell factor 1 	ENSMUST00000109268.1|Ebf1|ENSMUSG00000057098.8|early B cell factor 1
mm10_v2_chr7_+_79660196_79660261	0.177252	Nanog	ENSMUST00000035977.7|Ticrr|ENSMUSG00000046591.9|TOPBP1-interacting checkpoint and replication regulator
mm10_v2_chr7_+_103550368_103550368	0.176839	Nanog	ENSMUST00000106888.1|Olfr613|ENSMUSG00000078624.2|olfactory receptor 613
mm10_v2_chr17_-_15826521_15826590	0.172965	Nanog	ENSMUST00000170578.1|Rgmb|ENSMUSG00000048027.7|RGM domain family, member B
mm10_v2_chrX_-_53269786_53269858	0.172646	Nanog	ENSMUST00000114841.1|Fam122b|ENSMUSG00000036022.9|family with sequence similarity 122, member B 	ENSMUST00000071023.5|Fam122b|ENSMUSG00000036022.9|family with sequence similarity 122, member B
mm10_v2_chr6_+_38551334_38551493	0.172394	Nanog	ENSMUST00000163047.1|Luc7l2|ENSMUSG00000029823.10|LUC7-like 2 (S. cerevisiae) 	ENSMUST00000161538.1|Luc7l2|ENSMUSG00000029823.10|LUC7-like 2 (S. cerevisiae) 	ENSMUST00000057692.4|Luc7l2|ENSMUSG00000029823.10|LUC7-like 2 (S. cerevisiae)
mm10_v2_chr16_+_13671922_13671937	0.164949	Nanog	ENSMUST00000035426.5|3110001I22Rik|ENSMUSG00000079737.3|RIKEN cDNA 3110001I22 gene
mm10_v2_chr8_-_34965631_34965714	0.162986	Nanog	ENSMUST00000033929.4|Tnks|ENSMUSG00000031529.4|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase
mm10_v2_chr11_-_94321957_94321988	0.159292	Nanog	ENSMUST00000166312.1|Luc7l3|ENSMUSG00000020863.9|LUC7-like 3 (S. cerevisiae) 	ENSMUST00000107821.2|Luc7l3|ENSMUSG00000020863.9|LUC7-like 3 (S. cerevisiae) 	ENSMUST00000021226.7|Luc7l3|ENSMUSG00000020863.9|LUC7-like 3 (S. cerevisiae) 	ENSMUST00000107820.1|Luc7l3|ENSMUSG00000020863.9|LUC7-like 3 (S. cerevisiae)
mm10_v2_chr5_-_103977360_103977403	0.159039	Nanog	ENSMUST00000048118.8|Hsd17b13|ENSMUSG00000034528.9|hydroxysteroid (17-beta) dehydrogenase 13
mm10_v2_chr8_-_89044162_89044195	0.159019	Nanog	ENSMUST00000034090.6|Sall1|ENSMUSG00000031665.6|sal-like 1 (Drosophila)
mm10_v2_chr7_+_89404356_89404367	0.158696	Nanog	ENSMUST00000058755.3|Fzd4|ENSMUSG00000049791.3|frizzled homolog 4 (Drosophila)
mm10_v2_chr2_+_69897220_69897247	0.158329	Nanog	ENSMUST00000055758.9|Ubr3|ENSMUSG00000044308.11|ubiquitin protein ligase E3 component n-recognin 3 	ENSMUST00000112251.2|Ubr3|ENSMUSG00000044308.11|ubiquitin protein ligase E3 component n-recognin 3
mm10_v2_chr15_-_50889043_50889054	0.157931	Nanog	ENSMUST00000183997.1|Trps1|ENSMUSG00000038679.10|trichorhinophalangeal syndrome I (human) 	ENSMUST00000183757.1|Trps1|ENSMUSG00000038679.10|trichorhinophalangeal syndrome I (human)
mm10_v2_chr2_+_69897255_69897303	0.15776	Nanog	ENSMUST00000131553.1|Ubr3|ENSMUSG00000044308.11|ubiquitin protein ligase E3 component n-recognin 3
mm10_v2_chr3_+_10088173_10088173	0.157309	Nanog	ENSMUST00000061419.7|Gm9833|ENSMUSG00000049230.7|predicted gene 9833
mm10_v2_chr11_+_86484647_86484716	0.157235	Nanog	ENSMUST00000020827.6|Rnft1|ENSMUSG00000020521.7|ring finger protein, transmembrane 1
mm10_v2_chr6_+_71282280_71282280	0.155956	Nanog	ENSMUST00000080949.7|Krcc1|ENSMUSG00000053012.11|lysine-rich coiled-coil 1
mm10_v2_chr7_+_82337218_82337218	0.155283	Nanog	ENSMUST00000173828.1|Adamtsl3|ENSMUSG00000070469.5|ADAMTS-like 3
mm10_v2_chr6_+_38551786_38551851	0.153259	Nanog	ENSMUST00000161227.1|Luc7l2|ENSMUSG00000029823.10|LUC7-like 2 (S. cerevisiae)
mm10_v2_chr16_+_19760902_19761054	0.152759	Nanog	ENSMUST00000119468.1|B3gnt5|ENSMUSG00000022686.8|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5
mm10_v2_chr6_-_39725448_39725478	0.152168	Nanog	ENSMUST00000002487.8|Braf|ENSMUSG00000002413.9|Braf transforming gene
mm10_v2_chr14_-_26534870_26534931	0.150354	Nanog	ENSMUST00000139075.1|Slmap|ENSMUSG00000021870.11|sarcolemma associated protein 	ENSMUST00000102956.1|Slmap|ENSMUSG00000021870.11|sarcolemma associated protein
mm10_v2_chr2_+_3513035_3513074	0.148744	Nanog	ENSMUST00000036350.2|Cdnf|ENSMUSG00000039496.2|cerebral dopamine neurotrophic factor
mm10_v2_chr11_-_109298121_109298142	0.148508	Nanog	ENSMUST00000020920.3|Rgs9|ENSMUSG00000020599.7|regulator of G-protein signaling 9
mm10_v2_chr10_+_53337686_53337724	0.146704	Nanog	ENSMUST00000046221.6|Pln|ENSMUSG00000038583.6|phospholamban 	ENSMUST00000163319.1|Pln|ENSMUSG00000038583.6|phospholamban
mm10_v2_chr2_+_144527718_144527773	0.146347	Nanog	ENSMUST00000028914.2|Polr3f|ENSMUSG00000027427.7|polymerase (RNA) III (DNA directed) polypeptide F 	ENSMUST00000110017.2|Polr3f|ENSMUSG00000027427.7|polymerase (RNA) III (DNA directed) polypeptide F
mm10_v2_chr13_+_44729794_44729807	0.145417	Nanog	ENSMUST00000172830.1|Jarid2|ENSMUSG00000038518.9|jumonji, AT rich interactive domain 2
mm10_v2_chr2_+_18064564_18064644	0.144974	Nanog	ENSMUST00000114671.1|Mllt10|ENSMUSG00000026743.10|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10
mm10_v2_chr7_-_100467149_100467190	0.144849	Nanog	ENSMUST00000184420.1|RP23-308M1.2|ENSMUSG00000099137.1|RP23-308M1.2
mm10_v2_chr4_-_126968124_126968154	0.144751	Nanog	ENSMUST00000106108.2|Zmym4|ENSMUSG00000042446.10|zinc finger, MYM-type 4
mm10_v2_chr12_+_3891728_3891801	0.141475	Nanog	ENSMUST00000172689.1|Dnmt3a|ENSMUSG00000020661.9|DNA methyltransferase 3A 	ENSMUST00000111186.1|Dnmt3a|ENSMUSG00000020661.9|DNA methyltransferase 3A
mm10_v2_chrX_+_153237466_153237466	0.138933	Nanog	ENSMUST00000143880.1|Klf8|ENSMUSG00000041649.7|Kruppel-like factor 8
mm10_v2_chr10_+_26772477_26772515	0.136978	Nanog	ENSMUST00000039557.7|Arhgap18|ENSMUSG00000039031.9|Rho GTPase activating protein 18
mm10_v2_chr15_-_71954395_71954424	0.136046	Nanog	ENSMUST00000159410.1|Col22a1|ENSMUSG00000079022.3|collagen, type XXII, alpha 1
mm10_v2_chr12_-_83921809_83921898	0.13596	Nanog	ENSMUST00000135962.1|Numb|ENSMUSG00000021224.8|numb gene homolog (Drosophila) 	ENSMUST00000155112.1|Numb|ENSMUSG00000021224.8|numb gene homolog (Drosophila) 	ENSMUST00000136848.1|Numb|ENSMUSG00000021224.8|numb gene homolog (Drosophila) 	ENSMUST00000126943.1|Numb|ENSMUSG00000021224.8|numb gene homolog (Drosophila)
mm10_v2_chr18_+_82554463_82554583	0.134981	Nanog	ENSMUST00000062446.7|Mbp|ENSMUSG00000041607.10|myelin basic protein 	ENSMUST00000102812.4|Mbp|ENSMUSG00000041607.10|myelin basic protein 	ENSMUST00000075372.5|Mbp|ENSMUSG00000041607.10|myelin basic protein 	ENSMUST00000080658.4|Mbp|ENSMUSG00000041607.10|myelin basic protein 	ENSMUST00000152071.1|Mbp|ENSMUSG00000041607.10|myelin basic protein 	ENSMUST00000114674.3|Mbp|ENSMUSG00000041607.10|myelin basic protein 	ENSMUST00000142850.1|Mbp|ENSMUSG00000041607.10|myelin basic protein 	ENSMUST00000133193.1|Mbp|ENSMUSG00000041607.10|myelin basic protein 	ENSMUST00000123251.1|Mbp|ENSMUSG00000041607.10|myelin basic protein 	ENSMUST00000153478.1|Mbp|ENSMUSG00000041607.10|myelin basic protein 	ENSMUST00000132369.1|Mbp|ENSMUSG00000041607.10|myelin basic protein
mm10_v2_chr14_+_56887795_56887795	0.134945	Nanog	ENSMUST00000022511.8|Zmym2|ENSMUSG00000021945.8|zinc finger, MYM-type 2
mm10_v2_chr4_-_46650102_46650209	0.134434	Nanog	ENSMUST00000084621.5|Tbc1d2|ENSMUSG00000039813.8|TBC1 domain family, member 2 	ENSMUST00000107750.1|Tbc1d2|ENSMUSG00000039813.8|TBC1 domain family, member 2
mm10_v2_chr13_-_9764943_9764994	0.13416	Nanog	ENSMUST00000110634.1|Zmynd11|ENSMUSG00000021156.10|zinc finger, MYND domain containing 11
mm10_v2_chr3_+_65666223_65666259	0.134038	Nanog	ENSMUST00000099075.2|Lekr1|ENSMUSG00000074579.7|leucine, glutamate and lysine rich 1 	ENSMUST00000107848.1|Lekr1|ENSMUSG00000074579.7|leucine, glutamate and lysine rich 1 	ENSMUST00000161794.1|Lekr1|ENSMUSG00000074579.7|leucine, glutamate and lysine rich 1
mm10_v2_chr1_+_153874335_153874354	0.129983	Nanog	ENSMUST00000055314.3|Gm5531|ENSMUSG00000043282.3|predicted gene 5531
mm10_v2_chr12_+_109747903_109748051	0.129538	Nanog	ENSMUST00000183084.1|Mirg|ENSMUSG00000097391.2|miRNA containing gene 	ENSMUST00000182300.1|Mirg|ENSMUSG00000097391.2|miRNA containing gene
mm10_v2_chr18_-_35215008_35215033	0.128352	Nanog	ENSMUST00000091636.3|Lrrtm2|ENSMUSG00000071862.2|leucine rich repeat transmembrane neuronal 2
mm10_v2_chr3_-_123672321_123672400	0.128119	Nanog	ENSMUST00000172537.1|Ndst3|ENSMUSG00000027977.9|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3 	ENSMUST00000029602.6|Ndst3|ENSMUSG00000027977.9|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3
mm10_v2_chr15_+_34453285_34453312	0.127844	Nanog	ENSMUST00000060894.7|BC030476|ENSMUSG00000044726.7|cDNA sequence BC030476
mm10_v2_chr15_-_13173607_13173644	0.125431	Nanog	ENSMUST00000036439.4|Cdh6|ENSMUSG00000039385.4|cadherin 6
mm10_v2_chr4_+_107968332_107968424	0.12368	Nanog	ENSMUST00000106713.3|Slc1a7|ENSMUSG00000008932.9|solute carrier family 1 (glutamate transporter), member 7
mm10_v2_chr12_+_35047180_35047230	0.122922	Nanog	ENSMUST00000048519.9|Snx13|ENSMUSG00000020590.9|sorting nexin 13 	ENSMUST00000163677.1|Snx13|ENSMUSG00000020590.9|sorting nexin 13
mm10_v2_chr12_-_56345862_56345894	0.120828	Nanog	ENSMUST00000021416.7|Mbip|ENSMUSG00000021028.7|MAP3K12 binding inhibitory protein 1
mm10_v2_chr2_-_144527341_144527424	0.120804	Nanog	ENSMUST00000163701.1|Dzank1|ENSMUSG00000037259.9|double zinc ribbon and ankyrin repeat domains 1 	ENSMUST00000081982.5|Dzank1|ENSMUSG00000037259.9|double zinc ribbon and ankyrin repeat domains 1
mm10_v2_chr14_+_73237891_73238007	0.12026	Nanog	ENSMUST00000044405.6|Lpar6|ENSMUSG00000033446.6|lysophosphatidic acid receptor 6
mm10_v2_chr10_+_18469958_18469981	0.119303	Nanog	ENSMUST00000162891.1|Nhsl1|ENSMUSG00000039835.9|NHS-like 1 	ENSMUST00000100054.3|Nhsl1|ENSMUSG00000039835.9|NHS-like 1
mm10_v2_chr17_+_8849974_8850001	0.118992	Nanog	ENSMUST00000115720.1|Pde10a|ENSMUSG00000023868.9|phosphodiesterase 10A
mm10_v2_chr6_+_29853746_29853790	0.118857	Nanog	ENSMUST00000064872.6|Ahcyl2|ENSMUSG00000029772.11|S-adenosylhomocysteine hydrolase-like 2 	ENSMUST00000152581.1|Ahcyl2|ENSMUSG00000029772.11|S-adenosylhomocysteine hydrolase-like 2 	ENSMUST00000176265.1|Ahcyl2|ENSMUSG00000029772.11|S-adenosylhomocysteine hydrolase-like 2 	ENSMUST00000154079.1|Ahcyl2|ENSMUSG00000029772.11|S-adenosylhomocysteine hydrolase-like 2
mm10_v2_chr5_+_135806859_135806902	0.118127	Nanog	ENSMUST00000126232.1|Srrm3|ENSMUSG00000039860.13|serine/arginine repetitive matrix 3
mm10_v2_chr12_-_20900867_20900867	0.117664	Nanog	ENSMUST00000079237.5|Zfp125|ENSMUSG00000069755.4|zinc finger protein 125
mm10_v2_chr17_-_51826562_51826601	0.116572	Nanog	ENSMUST00000024720.4|Satb1|ENSMUSG00000023927.9|special AT-rich sequence binding protein 1 	ENSMUST00000129667.1|Satb1|ENSMUSG00000023927.9|special AT-rich sequence binding protein 1 	ENSMUST00000156051.1|Satb1|ENSMUSG00000023927.9|special AT-rich sequence binding protein 1 	ENSMUST00000169480.1|Satb1|ENSMUSG00000023927.9|special AT-rich sequence binding protein 1 	ENSMUST00000148559.1|Satb1|ENSMUSG00000023927.9|special AT-rich sequence binding protein 1
mm10_v2_chr4_+_43058939_43058969	0.116444	Nanog	ENSMUST00000079978.6|Unc13b|ENSMUSG00000028456.11|unc-13 homolog B (C. elegans)
mm10_v2_chr3_-_110143937_110144011	0.114042	Nanog	ENSMUST00000051253.3|Ntng1|ENSMUSG00000050836.3|netrin G1
mm10_v2_chr9_-_66514567_66514597	0.113155	Nanog	ENSMUST00000056890.8|Fbxl22|ENSMUSG00000050503.8|F-box and leucine-rich repeat protein 22
mm10_v2_chr2_-_140066661_140066805	0.113054	Nanog	ENSMUST00000046656.2|Tasp1|ENSMUSG00000039033.5|taspase, threonine aspartase 1 	ENSMUST00000099304.3|Tasp1|ENSMUSG00000039033.5|taspase, threonine aspartase 1 	ENSMUST00000110079.2|Tasp1|ENSMUSG00000039033.5|taspase, threonine aspartase 1
mm10_v2_chr12_+_36381519_36381594	0.110461	Nanog	ENSMUST00000062041.5|Ispd|ENSMUSG00000043153.5|isoprenoid synthase domain containing
mm10_v2_chr9_-_44305595_44305688	0.109924	Nanog	ENSMUST00000034629.4|Hinfp|ENSMUSG00000032119.4|histone H4 transcription factor
mm10_v2_chr2_-_45112890_45113010	0.109404	Nanog	ENSMUST00000076836.6|Zeb2|ENSMUSG00000026872.10|zinc finger E-box binding homeobox 2
mm10_v2_chr7_+_28693032_28693144	0.107729	Nanog	ENSMUST00000151227.1|Fbxo27|ENSMUSG00000037463.8|F-box protein 27 	ENSMUST00000108281.1|Fbxo27|ENSMUSG00000037463.8|F-box protein 27
mm10_v2_chr8_-_61902669_61902713	0.106727	Nanog	ENSMUST00000121785.1|Palld|ENSMUSG00000058056.9|palladin, cytoskeletal associated protein 	ENSMUST00000034057.7|Palld|ENSMUSG00000058056.9|palladin, cytoskeletal associated protein
mm10_v2_chr5_+_121397936_121398004	0.106204	Nanog	ENSMUST00000042163.8|Naa25|ENSMUSG00000042719.11|N(alpha)-acetyltransferase 25, NatB auxiliary subunit
mm10_v2_chr1_+_93512079_93512125	0.105506	Nanog	ENSMUST00000120301.1|Farp2|ENSMUSG00000034066.7|FERM, RhoGEF and pleckstrin domain protein 2 	ENSMUST00000041983.4|Farp2|ENSMUSG00000034066.7|FERM, RhoGEF and pleckstrin domain protein 2 	ENSMUST00000122402.1|Farp2|ENSMUSG00000034066.7|FERM, RhoGEF and pleckstrin domain protein 2
mm10_v2_chr16_+_3872368_3872385	0.10244	Nanog	ENSMUST00000151988.1|Naa60|ENSMUSG00000005982.7|N(alpha)-acetyltransferase 60, NatF catalytic subunit
mm10_v2_chr5_+_19907774_19907861	0.100129	Nanog	ENSMUST00000115267.2|Magi2|ENSMUSG00000040003.11|membrane associated guanylate kinase, WW and PDZ domain containing 2
mm10_v2_chr14_+_79515618_79515694	0.0999832	Nanog	ENSMUST00000110835.1|Elf1|ENSMUSG00000036461.9|E74-like factor 1
mm10_v2_chr4_+_109343029_109343081	0.0989754	Nanog	ENSMUST00000030281.5|Eps15|ENSMUSG00000028552.7|epidermal growth factor receptor pathway substrate 15
mm10_v2_chr15_-_103251465_103251705	0.0984651	Nanog	ENSMUST00000133600.1|Nfe2|ENSMUSG00000058794.6|nuclear factor, erythroid derived 2 	ENSMUST00000134554.1|Nfe2|ENSMUSG00000058794.6|nuclear factor, erythroid derived 2 	ENSMUST00000156927.1|Nfe2|ENSMUSG00000058794.6|nuclear factor, erythroid derived 2 	ENSMUST00000149111.1|Nfe2|ENSMUSG00000058794.6|nuclear factor, erythroid derived 2 	ENSMUST00000132836.1|Nfe2|ENSMUSG00000058794.6|nuclear factor, erythroid derived 2
mm10_v2_chr4_-_9669068_9669162	0.0983732	Nanog	ENSMUST00000078139.6|Asph|ENSMUSG00000028207.12|aspartate-beta-hydroxylase 	ENSMUST00000108340.2|Asph|ENSMUSG00000028207.12|aspartate-beta-hydroxylase 	ENSMUST00000084915.4|Asph|ENSMUSG00000028207.12|aspartate-beta-hydroxylase 	ENSMUST00000108337.1|Asph|ENSMUSG00000028207.12|aspartate-beta-hydroxylase 	ENSMUST00000084912.5|Asph|ENSMUSG00000028207.12|aspartate-beta-hydroxylase 	ENSMUST00000038564.6|Asph|ENSMUSG00000028207.12|aspartate-beta-hydroxylase 	ENSMUST00000146441.1|Asph|ENSMUSG00000028207.12|aspartate-beta-hydroxylase 	ENSMUST00000098275.2|Asph|ENSMUSG00000028207.12|aspartate-beta-hydroxylase
mm10_v2_chr19_-_53464721_53464833	0.0981273	Nanog	ENSMUST00000180489.1|5830416P10Rik|ENSMUSG00000097636.1|RIKEN cDNA 5830416P10 gene
mm10_v2_chr11_+_75468040_75468096	0.0974741	Nanog	ENSMUST00000043598.7|Tlcd2|ENSMUSG00000038217.7|TLC domain containing 2 	ENSMUST00000108435.1|Tlcd2|ENSMUSG00000038217.7|TLC domain containing 2
mm10_v2_chr13_-_3893556_3893589	0.0973826	Nanog	ENSMUST00000099946.4|Net1|ENSMUSG00000021215.8|neuroepithelial cell transforming gene 1
mm10_v2_chr2_+_116067213_116067250	0.0971846	Nanog	ENSMUST00000152412.1|G630016G05Rik|ENSMUSG00000086308.1|RIKEN cDNA G630016G05 gene
mm10_v2_chr4_+_101507947_101508032	0.0949301	Nanog	ENSMUST00000149047.1|Dnajc6|ENSMUSG00000028528.10|DnaJ (Hsp40) homolog, subfamily C, member 6 	ENSMUST00000106929.3|Dnajc6|ENSMUSG00000028528.10|DnaJ (Hsp40) homolog, subfamily C, member 6
mm10_v2_chr10_-_9901079_9901250	0.0937695	Nanog	ENSMUST00000141722.1|Stxbp5|ENSMUSG00000019790.10|syntaxin binding protein 5 (tomosyn)
mm10_v2_chr5_-_16731074_16731074	0.0932004	Nanog	ENSMUST00000073014.5|Gm8991|ENSMUSG00000059179.5|predicted pseudogene 8991
mm10_v2_chr11_+_43151599_43151599	0.0915975	Nanog	ENSMUST00000077659.5|Atp10b|ENSMUSG00000055415.7|ATPase, class V, type 10B
mm10_v2_chr6_-_50456085_50456174	0.0895874	Nanog	ENSMUST00000146341.1|Osbpl3|ENSMUSG00000029822.9|oxysterol binding protein-like 3 	ENSMUST00000071728.4|Osbpl3|ENSMUSG00000029822.9|oxysterol binding protein-like 3
mm10_v2_chr13_-_12258093_12258134	0.0891507	Nanog	ENSMUST00000099856.4|Mtr|ENSMUSG00000021311.8|5-methyltetrahydrofolate-homocysteine methyltransferase
mm10_v2_chr3_-_39359128_39359160	0.0886157	Nanog	ENSMUST00000056409.2|Gm9845|ENSMUSG00000050533.2|predicted pseudogene 9845
mm10_v2_chr5_+_57718021_57718104	0.0883396	Nanog	ENSMUST00000094783.3|Pcdh7|ENSMUSG00000029108.8|protocadherin 7 	ENSMUST00000068110.7|Pcdh7|ENSMUSG00000029108.8|protocadherin 7
mm10_v2_chr13_-_51567084_51567084	0.0874982	Nanog	ENSMUST00000021898.5|Shc3|ENSMUSG00000021448.6|src homology 2 domain-containing transforming protein C3
mm10_v2_chr14_+_61607455_61607482	0.0873444	Nanog	ENSMUST00000051184.8|Kcnrg|ENSMUSG00000046168.8|potassium channel regulator
mm10_v2_chr5_-_137684665_137684729	0.087112	Nanog	ENSMUST00000100544.4|Agfg2|ENSMUSG00000029722.9|ArfGAP with FG repeats 2 	ENSMUST00000031736.9|Agfg2|ENSMUSG00000029722.9|ArfGAP with FG repeats 2 	ENSMUST00000151839.1|Agfg2|ENSMUSG00000029722.9|ArfGAP with FG repeats 2
mm10_v2_chr10_+_90576570_90576668	0.0869313	Nanog	ENSMUST00000182786.1|Anks1b|ENSMUSG00000058589.8|ankyrin repeat and sterile alpha motif domain containing 1B 	ENSMUST00000182600.1|Anks1b|ENSMUSG00000058589.8|ankyrin repeat and sterile alpha motif domain containing 1B
mm10_v2_chr11_+_95712673_95712673	0.0854149	Nanog	ENSMUST00000107717.1|Zfp652|ENSMUSG00000075595.3|zinc finger protein 652
mm10_v2_chr8_-_25201349_25201459	0.0852802	Nanog	ENSMUST00000084512.4|Tacc1|ENSMUSG00000065954.4|transforming, acidic coiled-coil containing protein 1 	ENSMUST00000084030.4|Tacc1|ENSMUSG00000065954.4|transforming, acidic coiled-coil containing protein 1
mm10_v2_chr17_+_35379608_35379637	0.0850432	Nanog	ENSMUST00000081435.4|H2-Q4|ENSMUSG00000035929.11|histocompatibility 2, Q region locus 4
mm10_v2_chr6_+_34746368_34746393	0.0807803	Nanog	ENSMUST00000142716.1|Cald1|ENSMUSG00000029761.10|caldesmon 1
mm10_v2_chr13_+_104178797_104178872	0.0796681	Nanog	ENSMUST00000022225.5|Trim23|ENSMUSG00000021712.8|tripartite motif-containing 23 	ENSMUST00000069187.5|Trim23|ENSMUSG00000021712.8|tripartite motif-containing 23
mm10_v2_chr3_-_69127098_69127113	0.0783583	Nanog	ENSMUST00000029353.2|Kpna4|ENSMUSG00000027782.4|karyopherin (importin) alpha 4
mm10_v2_chr4_+_126024506_126024550	0.0778352	Nanog	ENSMUST00000106162.1|Csf3r|ENSMUSG00000028859.8|colony stimulating factor 3 receptor (granulocyte)
mm10_v2_chr9_+_108490676_108490692	0.0775964	Nanog	ENSMUST00000178075.1|Usp19|ENSMUSG00000006676.10|ubiquitin specific peptidase 19 	ENSMUST00000085044.7|Usp19|ENSMUSG00000006676.10|ubiquitin specific peptidase 19 	ENSMUST00000166103.2|Usp19|ENSMUSG00000006676.10|ubiquitin specific peptidase 19 	ENSMUST00000006854.7|Usp19|ENSMUSG00000006676.10|ubiquitin specific peptidase 19
mm10_v2_chr18_+_24205303_24205348	0.0759385	Nanog	ENSMUST00000000430.7|Galnt1|ENSMUSG00000000420.9|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1
mm10_v2_chr1_-_172027251_172027268	0.0746498	Nanog	ENSMUST00000138714.1|Vangl2|ENSMUSG00000026556.9|vang-like 2 (van gogh, Drosophila)
mm10_v2_chr11_-_109298090_109298118	0.0744122	Nanog	ENSMUST00000106704.2|Rgs9|ENSMUSG00000020599.7|regulator of G-protein signaling 9
mm10_v2_chr16_+_32877775_32877831	0.0742479	Nanog	ENSMUST00000023489.4|Fyttd1|ENSMUSG00000022800.7|forty-two-three domain containing 1 	ENSMUST00000171325.1|Fyttd1|ENSMUSG00000022800.7|forty-two-three domain containing 1
mm10_v2_chr7_+_100706623_100706668	0.0736666	Nanog	ENSMUST00000107042.1|Fam168a|ENSMUSG00000029461.9|family with sequence similarity 168, member A
mm10_v2_chr19_+_4003334_4003366	0.0727661	Nanog	ENSMUST00000025806.3|Doc2g|ENSMUSG00000024871.4|double C2, gamma
mm10_v2_chr3_-_63851251_63851359	0.0715035	Nanog	ENSMUST00000162269.2|Plch1|ENSMUSG00000036834.10|phospholipase C, eta 1 	ENSMUST00000159676.2|Plch1|ENSMUSG00000036834.10|phospholipase C, eta 1 	ENSMUST00000175947.1|Plch1|ENSMUSG00000036834.10|phospholipase C, eta 1
mm10_v2_chr11_-_107337556_107337637	0.0710741	Nanog	ENSMUST00000040380.6|Pitpnc1|ENSMUSG00000040430.12|phosphatidylinositol transfer protein, cytoplasmic 1
mm10_v2_chr18_+_57142782_57142796	0.0692135	Nanog	ENSMUST00000139892.1|Megf10|ENSMUSG00000024593.9|multiple EGF-like-domains 10
mm10_v2_chr10_+_75037066_75037100	0.0690987	Nanog	ENSMUST00000147802.1|Rab36|ENSMUSG00000020175.7|RAB36, member RAS oncogene family 	ENSMUST00000020391.5|Rab36|ENSMUSG00000020175.7|RAB36, member RAS oncogene family
mm10_v2_chr9_+_109096659_109096710	0.0687439	Nanog	ENSMUST00000130366.1|Plxnb1|ENSMUSG00000053646.7|plexin B1
mm10_v2_chr12_-_40037387_40037429	0.067893	Nanog	ENSMUST00000146905.1|Arl4a|ENSMUSG00000047446.12|ADP-ribosylation factor-like 4A
mm10_v2_chr9_+_104063678_104063710	0.0669927	Nanog	ENSMUST00000047799.5|Acad11|ENSMUSG00000090150.2|acyl-Coenzyme A dehydrogenase family, member 11
mm10_v2_chr12_-_91384403_91384430	0.0666931	Nanog	ENSMUST00000141429.1|Cep128|ENSMUSG00000061533.9|centrosomal protein 128
mm10_v2_chr15_-_51991679_51991760	0.0662713	Nanog	ENSMUST00000022927.9|Rad21|ENSMUSG00000022314.9|RAD21 homolog (S. pombe)
mm10_v2_chr9_+_113930934_113930987	0.0661618	Nanog	ENSMUST00000084885.5|Ubp1|ENSMUSG00000009741.8|upstream binding protein 1 	ENSMUST00000009885.7|Ubp1|ENSMUSG00000009741.8|upstream binding protein 1
mm10_v2_chr9_+_44379536_44379624	0.0661343	Nanog	ENSMUST00000161318.1|Hyou1|ENSMUSG00000032115.7|hypoxia up-regulated 1 	ENSMUST00000160902.1|Hyou1|ENSMUSG00000032115.7|hypoxia up-regulated 1
mm10_v2_chr1_+_50927511_50927543	0.0654612	Nanog	ENSMUST00000081851.3|Tmeff2|ENSMUSG00000026109.8|transmembrane protein with EGF-like and two follistatin-like domains 2
mm10_v2_chr5_-_28467093_28467109	0.0652371	Nanog	ENSMUST00000002708.3|Shh|ENSMUSG00000002633.3|sonic hedgehog
mm10_v2_chr8_-_35495487_35495545	0.0649827	Nanog	ENSMUST00000033927.6|Eri1|ENSMUSG00000031527.6|exoribonuclease 1
mm10_v2_chr18_+_77185815_77185879	0.0642626	Nanog	ENSMUST00000079618.4|St8sia5|ENSMUSG00000025425.11|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5
mm10_v2_chr11_+_88294043_88294073	0.0625565	Nanog	ENSMUST00000037268.4|1700106J16Rik|ENSMUSG00000034031.4|RIKEN cDNA 1700106J16 gene
mm10_v2_chr18_+_37518341_37518359	0.0606048	Nanog	ENSMUST00000097609.1|Pcdhb22|ENSMUSG00000073591.3|protocadherin beta 22
mm10_v2_chr17_-_25727364_25727426	0.0587364	Nanog	ENSMUST00000170070.1|Chtf18|ENSMUSG00000019214.7|CTF18, chromosome transmission fidelity factor 18 	ENSMUST00000048054.7|Chtf18|ENSMUSG00000019214.7|CTF18, chromosome transmission fidelity factor 18
mm10_v2_chr13_+_96082158_96082158	0.0587306	Nanog	ENSMUST00000185178.1|Gm17190|ENSMUSG00000099115.1|predicted gene 17190
mm10_v2_chr13_+_111686303_111686351	0.058472	Nanog	ENSMUST00000047412.4|Mier3|ENSMUSG00000032727.7|mesoderm induction early response 1, family member 3 	ENSMUST00000109271.2|Mier3|ENSMUSG00000032727.7|mesoderm induction early response 1, family member 3
mm10_v2_chr9_-_103365769_103365785	0.0584243	Nanog	ENSMUST00000035484.4|Cdv3|ENSMUSG00000032803.8|carnitine deficiency-associated gene expressed in ventricle 3 	ENSMUST00000072249.6|Cdv3|ENSMUSG00000032803.8|carnitine deficiency-associated gene expressed in ventricle 3
mm10_v2_chr4_+_101507855_101507871	0.0537122	Nanog	ENSMUST00000038207.5|Dnajc6|ENSMUSG00000028528.10|DnaJ (Hsp40) homolog, subfamily C, member 6
mm10_v2_chr17_+_35841668_35841683	0.0534905	Nanog	ENSMUST00000174124.1|Mdc1|ENSMUSG00000061607.8|mediator of DNA damage checkpoint 1
mm10_v2_chr2_-_176149825_176149825	0.0522469	Nanog	ENSMUST00000109049.3|Gm2004|ENSMUSG00000095648.1|predicted gene 2004 	ENSMUST00000179349.1|Gm2004|ENSMUSG00000095648.1|predicted gene 2004
mm10_v2_chr17_+_35841491_35841515	0.0515244	Nanog	ENSMUST00000082337.6|Mdc1|ENSMUSG00000061607.8|mediator of DNA damage checkpoint 1
mm10_v2_chr6_+_8259327_8259350	0.04904	Nanog	ENSMUST00000159378.1|Gm16039|ENSMUSG00000089862.2|predicted gene 16039
mm10_v2_chr15_+_21111452_21111452	0.0489749	Nanog	ENSMUST00000075132.6|Cdh12|ENSMUSG00000040452.8|cadherin 12
mm10_v2_chr1_+_172082796_172082855	0.0485301	Nanog	ENSMUST00000027833.5|Copa|ENSMUSG00000026553.11|coatomer protein complex subunit alpha
mm10_v2_chr12_-_83921899_83921934	0.0481152	Nanog	ENSMUST00000117217.1|Numb|ENSMUSG00000021224.8|numb gene homolog (Drosophila)
mm10_v2_chr15_+_9436028_9436083	0.0476433	Nanog	ENSMUST00000042360.3|Capsl|ENSMUSG00000039676.3|calcyphosine-like
mm10_v2_chr16_+_16983454_16983567	0.0473858	Nanog	ENSMUST00000115731.1|Mapk1|ENSMUSG00000063358.9|mitogen-activated protein kinase 1
mm10_v2_chr16_+_13671858_13671918	0.0468214	Nanog	ENSMUST00000023365.6|Bfar|ENSMUSG00000022684.8|bifunctional apoptosis regulator
mm10_v2_chr19_+_6046576_6046662	0.0463539	Nanog	ENSMUST00000138532.1|Syvn1|ENSMUSG00000024807.11|synovial apoptosis inhibitor 1, synoviolin 	ENSMUST00000129081.1|Syvn1|ENSMUSG00000024807.11|synovial apoptosis inhibitor 1, synoviolin 	ENSMUST00000156550.1|Syvn1|ENSMUSG00000024807.11|synovial apoptosis inhibitor 1, synoviolin
mm10_v2_chr16_+_13671980_13672032	0.0458112	Nanog	ENSMUST00000069281.7|Bfar|ENSMUSG00000022684.8|bifunctional apoptosis regulator
mm10_v2_chr5_+_33658123_33658160	0.0446487	Nanog	ENSMUST00000074849.6|Tacc3|ENSMUSG00000037313.10|transforming, acidic coiled-coil containing protein 3 	ENSMUST00000079534.4|Tacc3|ENSMUSG00000037313.10|transforming, acidic coiled-coil containing protein 3
mm10_v2_chr5_+_33658567_33658616	0.0443257	Nanog	ENSMUST00000114426.3|Tacc3|ENSMUSG00000037313.10|transforming, acidic coiled-coil containing protein 3
mm10_v2_chr7_+_128688480_128688500	0.0440839	Nanog	ENSMUST00000118605.1|Inpp5f|ENSMUSG00000042105.12|inositol polyphosphate-5-phosphatase F
mm10_v2_chr2_-_167062981_167063048	0.04349	Nanog	ENSMUST00000048988.7|Znfx1|ENSMUSG00000039501.8|zinc finger, NFX1-type containing 1
mm10_v2_chr3_+_54481429_54481429	0.0425762	Nanog	ENSMUST00000091130.3|Gm5641|ENSMUSG00000069014.3|predicted gene 5641
mm10_v2_chr2_+_130576170_130576176	0.041881	Nanog	ENSMUST00000028764.5|Oxt|ENSMUSG00000027301.7|oxytocin
mm10_v2_chr16_-_32877723_32877766	0.0417178	Nanog	ENSMUST00000119810.1|1700021K19Rik|ENSMUSG00000035629.11|RIKEN cDNA 1700021K19 gene
mm10_v2_chr11_+_115154139_115154194	0.0415888	Nanog	ENSMUST00000021076.5|Rab37|ENSMUSG00000020732.7|RAB37, member of RAS oncogene family
mm10_v2_chr19_-_9899450_9899533	0.0411461	Nanog	ENSMUST00000025562.7|Incenp|ENSMUSG00000024660.8|inner centromere protein
mm10_v2_chr13_-_85127514_85127514	0.0399094	Nanog	ENSMUST00000179230.1|Gm4076|ENSMUSG00000096449.1|predicted gene 4076
mm10_v2_chr7_-_90475971_90476003	0.0390316	Nanog	ENSMUST00000032843.7|Tmem126b|ENSMUSG00000030614.7|transmembrane protein 126B
mm10_v2_chr17_-_81649607_81649607	0.0387561	Nanog	ENSMUST00000163680.2|Slc8a1|ENSMUSG00000054640.8|solute carrier family 8 (sodium/calcium exchanger), member 1 	ENSMUST00000086538.3|Slc8a1|ENSMUSG00000054640.8|solute carrier family 8 (sodium/calcium exchanger), member 1 	ENSMUST00000163123.1|Slc8a1|ENSMUSG00000054640.8|solute carrier family 8 (sodium/calcium exchanger), member 1
mm10_v2_chr2_-_3512746_3512814	0.038502	Nanog	ENSMUST00000056700.7|Hspa14|ENSMUSG00000079615.3|heat shock protein 14 	ENSMUST00000027961.5|Hspa14|ENSMUSG00000051396.8|heat shock protein 14
mm10_v2_chr18_+_37300799_37300835	0.0378919	Nanog	ENSMUST00000051754.1|Pcdhb3|ENSMUSG00000045498.1|protocadherin beta 3
mm10_v2_chr11_+_97685903_97685966	0.0376696	Nanog	ENSMUST00000107583.2|Cisd3|ENSMUSG00000078695.2|CDGSH iron sulfur domain 3
mm10_v2_chr10_+_33905015_33905111	0.036679	Nanog	ENSMUST00000169670.1|Rsph4a|ENSMUSG00000039552.7|radial spoke head 4 homolog A (Chlamydomonas)
mm10_v2_chr5_+_25246775_25246802	0.0366779	Nanog	ENSMUST00000144971.1|Galnt11|ENSMUSG00000038072.8|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 11
mm10_v2_chr4_+_116708467_116708509	0.0366526	Nanog	ENSMUST00000030452.6|Ccdc163|ENSMUSG00000028689.8|coiled-coil domain containing 163
mm10_v2_chr2_+_130274437_130274492	0.035861	Nanog	ENSMUST00000141872.1|Nop56|ENSMUSG00000027405.10|NOP56 ribonucleoprotein
mm10_v2_chr18_-_67245818_67245842	0.0350984	Nanog	ENSMUST00000073054.3|Mppe1|ENSMUSG00000062526.3|metallophosphoesterase 1
mm10_v2_chr9_+_44379490_44379513	0.033839	Nanog	ENSMUST00000066601.6|Hyou1|ENSMUSG00000032115.7|hypoxia up-regulated 1
mm10_v2_chr4_+_12906838_12906881	0.0338138	Nanog	ENSMUST00000143186.1|Triqk|ENSMUSG00000055963.6|triple QxxK/R motif containing 	ENSMUST00000183345.1|Triqk|ENSMUSG00000055963.6|triple QxxK/R motif containing
mm10_v2_chr6_-_102464667_102464667	0.033228	Nanog	ENSMUST00000032159.6|Cntn3|ENSMUSG00000030075.8|contactin 3
mm10_v2_chr13_+_12565868_12565883	0.033223	Nanog	ENSMUST00000071973.6|Ero1lb|ENSMUSG00000057069.6|ERO1-like beta (S. cerevisiae)
mm10_v2_chr12_-_4038905_4038957	0.0325405	Nanog	ENSMUST00000111178.1|Efr3b|ENSMUSG00000020658.9|EFR3 homolog B (S. cerevisiae)
mm10_v2_chr19_+_7557452_7557465	0.032174	Nanog	ENSMUST00000025925.4|Pla2g16|ENSMUSG00000060675.7|phospholipase A2, group XVI 	ENSMUST00000136465.1|Pla2g16|ENSMUSG00000060675.7|phospholipase A2, group XVI
mm10_v2_chr14_-_96519067_96519102	0.0318201	Nanog	ENSMUST00000022666.7|Klhl1|ENSMUSG00000022076.9|kelch-like 1
mm10_v2_chr1_-_172082757_172082795	0.0313177	Nanog	ENSMUST00000003550.4|Ncstn|ENSMUSG00000003458.6|nicastrin
mm10_v2_chr7_-_141434402_141434486	0.0308101	Nanog	ENSMUST00000136354.1|Slc25a22|ENSMUSG00000019082.11|solute carrier family 25 (mitochondrial carrier, glutamate), member 22
mm10_v2_chr7_-_144939823_144939869	0.0299761	Nanog	ENSMUST00000093962.4|Ccnd1|ENSMUSG00000070348.4|cyclin D1
mm10_v2_chr3_-_55055038_55055055	0.029718	Nanog	ENSMUST00000029368.2|Ccna1|ENSMUSG00000027793.2|cyclin A1
mm10_v2_chr2_+_62664279_62664300	0.0282957	Nanog	ENSMUST00000028257.2|Gca|ENSMUSG00000026893.4|grancalcin
mm10_v2_chr17_-_43543639_43543639	0.0281227	Nanog	ENSMUST00000178772.1|Ankrd66|ENSMUSG00000096140.1|ankyrin repeat domain 66
mm10_v2_chr13_-_104178399_104178480	0.0280466	Nanog	ENSMUST00000179891.1|Trappc13|ENSMUSG00000021711.10|trafficking protein particle complex 13 	ENSMUST00000022224.9|Trappc13|ENSMUSG00000021711.10|trafficking protein particle complex 13 	ENSMUST00000141557.1|Trappc13|ENSMUSG00000021711.10|trafficking protein particle complex 13 	ENSMUST00000091264.1|Trappc13|ENSMUSG00000078936.1|trafficking protein particle complex 13 	ENSMUST00000144060.1|Trappc13|ENSMUSG00000021711.10|trafficking protein particle complex 13
mm10_v2_chr6_-_29179584_29179584	0.0279261	Nanog	ENSMUST00000159200.1|Prrt4|ENSMUSG00000079654.3|proline-rich transmembrane protein 4
mm10_v2_chr11_+_75532099_75532125	0.0274984	Nanog	ENSMUST00000169547.2|Slc43a2|ENSMUSG00000038178.10|solute carrier family 43, member 2
mm10_v2_chr3_+_103968110_103968446	0.0249691	Nanog	ENSMUST00000117150.1|Phtf1|ENSMUSG00000058388.8|putative homeodomain transcription factor 1 	ENSMUST00000063717.7|Phtf1|ENSMUSG00000058388.8|putative homeodomain transcription factor 1 	ENSMUST00000055425.8|Phtf1|ENSMUSG00000058388.8|putative homeodomain transcription factor 1 	ENSMUST00000123611.1|Phtf1|ENSMUSG00000058388.8|putative homeodomain transcription factor 1 	ENSMUST00000090685.4|Phtf1|ENSMUSG00000058388.8|putative homeodomain transcription factor 1
mm10_v2_chrX_+_7822289_7822289	0.0248682	Nanog	ENSMUST00000009875.4|Kcnd1|ENSMUSG00000009731.4|potassium voltage-gated channel, Shal-related family, member 1
mm10_v2_chr2_+_112379204_112379253	0.0247204	Nanog	ENSMUST00000028552.3|Katnbl1|ENSMUSG00000027132.3|katanin p80 subunit B like 1
mm10_v2_chr19_-_43524462_43524605	0.0238034	Nanog	ENSMUST00000026196.7|Got1|ENSMUSG00000025190.7|glutamate oxaloacetate transaminase 1, soluble
mm10_v2_chr7_+_25267669_25267723	0.0235892	Nanog	ENSMUST00000169266.1|Cic|ENSMUSG00000005442.7|capicua homolog (Drosophila)
mm10_v2_chr1_+_131962941_131962969	0.0228806	Nanog	ENSMUST00000177943.1|Slc45a3|ENSMUSG00000026435.9|solute carrier family 45, member 3
mm10_v2_chr2_+_32363680_32363810	0.0228773	Nanog	ENSMUST00000113331.1|Ciz1|ENSMUSG00000039205.10|CDKN1A interacting zinc finger protein 1 	ENSMUST00000113338.2|Ciz1|ENSMUSG00000039205.10|CDKN1A interacting zinc finger protein 1
mm10_v2_chr5_-_115652974_115652992	0.0221345	Nanog	ENSMUST00000121746.1|Ccdc64|ENSMUSG00000041609.10|coiled-coil domain containing 64 	ENSMUST00000118576.1|Ccdc64|ENSMUSG00000041609.10|coiled-coil domain containing 64
mm10_v2_chr1_+_74362108_74362156	0.0213179	Nanog	ENSMUST00000097697.1|Gm216|ENSMUSG00000073650.2|predicted gene 216
mm10_v2_chr16_+_11405648_11405713	0.0197123	Nanog	ENSMUST00000096273.2|Snx29|ENSMUSG00000071669.8|sorting nexin 29
mm10_v2_chr5_+_135168283_135168373	0.018852	Nanog	ENSMUST00000031692.5|Bcl7b|ENSMUSG00000029681.6|B cell CLL/lymphoma 7B
mm10_v2_chr6_+_8259379_8259460	0.0169314	Nanog	ENSMUST00000162034.1|Gm16039|ENSMUSG00000089862.2|predicted gene 16039 	ENSMUST00000160705.1|Gm16039|ENSMUSG00000089862.2|predicted gene 16039 	ENSMUST00000159433.1|Gm16039|ENSMUSG00000089862.2|predicted gene 16039
mm10_v2_chr1_-_186117251_186117310	0.0167892	Nanog	ENSMUST00000045388.7|Lyplal1|ENSMUSG00000039246.7|lysophospholipase-like 1
mm10_v2_chr4_+_136310991_136311054	0.0166186	Nanog	ENSMUST00000084219.5|Hnrnpr|ENSMUSG00000066037.8|heterogeneous nuclear ribonucleoprotein R
mm10_v2_chr4_+_136310952_136310984	0.0159692	Nanog	ENSMUST00000105850.1|Hnrnpr|ENSMUSG00000066037.8|heterogeneous nuclear ribonucleoprotein R 	ENSMUST00000148843.3|Hnrnpr|ENSMUSG00000066037.8|heterogeneous nuclear ribonucleoprotein R
mm10_v2_chr2_+_164948219_164948245	0.0152759	Nanog	ENSMUST00000017881.2|Mmp9|ENSMUSG00000017737.2|matrix metallopeptidase 9
mm10_v2_chr7_+_64287665_64287676	0.0143558	Nanog	ENSMUST00000032736.4|Mtmr10|ENSMUSG00000030522.8|myotubularin related protein 10
mm10_v2_chr3_+_79884496_79884571	0.0142722	Nanog	ENSMUST00000118853.1|Fam198b|ENSMUSG00000027955.10|family with sequence similarity 198, member B
mm10_v2_chr15_-_97247287_97247315	0.0125026	Nanog	ENSMUST00000053106.5|Amigo2|ENSMUSG00000048218.5|adhesion molecule with Ig like domain 2
mm10_v2_chr3_-_144760841_144760868	0.0122893	Nanog	ENSMUST00000059091.5|Clca1|ENSMUSG00000056025.6|chloride channel calcium activated 1
mm10_v2_chr7_-_141655319_141655395	0.0117615	Nanog	ENSMUST00000062451.7|Muc6|ENSMUSG00000048191.9|mucin 6, gastric
mm10_v2_chr16_+_13358375_13358439	0.0117465	Nanog	ENSMUST00000149359.1|Mkl2|ENSMUSG00000009569.8|MKL/myocardin-like 2
mm10_v2_chr17_+_35439155_35439195	0.0114308	Nanog	ENSMUST00000071951.6|H2-Q7|ENSMUSG00000060550.9|histocompatibility 2, Q region locus 7 	ENSMUST00000078205.7|H2-Q7|ENSMUSG00000060550.9|histocompatibility 2, Q region locus 7 	ENSMUST00000116598.3|H2-Q7|ENSMUSG00000060550.9|histocompatibility 2, Q region locus 7 	ENSMUST00000076256.7|H2-Q7|ENSMUSG00000060550.9|histocompatibility 2, Q region locus 7
mm10_v2_chr6_+_71909046_71909076	0.0113108	Nanog	ENSMUST00000055296.8|Polr1a|ENSMUSG00000049553.9|polymerase (RNA) I polypeptide A
mm10_v2_chr6_+_124829540_124829577	0.0106632	Nanog	ENSMUST00000150120.1|Cdca3|ENSMUSG00000023505.7|cell division cycle associated 3
mm10_v2_chr19_-_45783512_45783558	0.0106542	Nanog	ENSMUST00000026243.3|Mgea5|ENSMUSG00000025220.7|meningioma expressed antigen 5 (hyaluronidase)
mm10_v2_chr11_-_82890541_82890626	0.010108	Nanog	ENSMUST00000092844.6|Rad51d|ENSMUSG00000018841.11|RAD51 homolog D 	ENSMUST00000021033.9|Rad51d|ENSMUSG00000018841.11|RAD51 homolog D 	ENSMUST00000018985.8|Rad51d|ENSMUSG00000018841.11|RAD51 homolog D
mm10_v2_chr12_+_24651346_24651409	0.00946004	Nanog	ENSMUST00000020982.5|Klf11|ENSMUSG00000020653.5|Kruppel-like factor 11
mm10_v2_chr7_+_119561699_119561726	0.00776818	Nanog	ENSMUST00000167935.2|Acsm2|ENSMUSG00000030945.10|acyl-CoA synthetase medium-chain family member 2 	ENSMUST00000130583.1|Acsm2|ENSMUSG00000030945.10|acyl-CoA synthetase medium-chain family member 2
mm10_v2_chr15_+_80255184_80255263	0.00775338	Nanog	ENSMUST00000109605.3|Atf4|ENSMUSG00000042406.7|activating transcription factor 4
mm10_v2_chr3_-_54915867_54915887	0.00697781	Nanog	ENSMUST00000070342.3|Sertm1|ENSMUSG00000056306.5|serine rich and transmembrane domain containing 1
mm10_v2_chr7_-_63212514_63212531	0.00668932	Nanog	ENSMUST00000032738.5|Chrna7|ENSMUSG00000030525.7|cholinergic receptor, nicotinic, alpha polypeptide 7
mm10_v2_chr6_-_120531289_120531328	0.00566923	Nanog	ENSMUST00000075303.6|Cecr5|ENSMUSG00000058979.6|cat eye syndrome chromosome region, candidate 5
mm10_v2_chr2_-_84715160_84715218	0.00405306	Nanog	ENSMUST00000035840.5|Zdhhc5|ENSMUSG00000034075.10|zinc finger, DHHC domain containing 5
mm10_v2_chr1_-_36445248_36445271	0.00401262	Nanog	ENSMUST00000125304.1|Lman2l|ENSMUSG00000001143.7|lectin, mannose-binding 2-like 	ENSMUST00000115011.1|Lman2l|ENSMUSG00000001143.7|lectin, mannose-binding 2-like
mm10_v2_chr5_-_147076482_147076586	0.00341286	Nanog	ENSMUST00000016664.7|Lnx2|ENSMUSG00000016520.7|ligand of numb-protein X 2
mm10_v2_chr12_-_34528844_34528904	0.00277324	Nanog	ENSMUST00000110819.2|Hdac9|ENSMUSG00000004698.9|histone deacetylase 9
mm10_v2_chr12_-_111813834_111813858	0.00194454	Nanog	ENSMUST00000021715.5|Xrcc3|ENSMUSG00000021287.6|X-ray repair complementing defective repair in Chinese hamster cells 3
mm10_v2_chr5_-_99978914_99978966	0.00191608	Nanog	ENSMUST00000112939.3|Hnrnpd|ENSMUSG00000000568.9|heterogeneous nuclear ribonucleoprotein D 	ENSMUST00000171786.1|Hnrnpd|ENSMUSG00000000568.9|heterogeneous nuclear ribonucleoprotein D 	ENSMUST00000072750.6|Hnrnpd|ENSMUSG00000000568.9|heterogeneous nuclear ribonucleoprotein D 	ENSMUST00000019128.8|Hnrnpd|ENSMUSG00000000568.9|heterogeneous nuclear ribonucleoprotein D 	ENSMUST00000172361.1|Hnrnpd|ENSMUSG00000000568.9|heterogeneous nuclear ribonucleoprotein D
mm10_v2_chr17_-_59013264_59013372	0.00170536	Nanog	ENSMUST00000174122.1|Nudt12|ENSMUSG00000024228.6|nudix (nucleoside diphosphate linked moiety X)-type motif 12 	ENSMUST00000025065.5|Nudt12|ENSMUSG00000024228.6|nudix (nucleoside diphosphate linked moiety X)-type motif 12
