mm10_v2_chr3_+_55782500_55782521	12.7689	Nkx1-1_Nkx1-2	ENSMUST00000075422.4|Mab21l1|ENSMUSG00000056947.4|mab-21-like 1 (C. elegans)
mm10_v2_chr6_-_23248264_23248390	5.70337	Nkx1-1_Nkx1-2	ENSMUST00000031709.5|Fezf1|ENSMUSG00000029697.5|Fez family zinc finger 1
mm10_v2_chrX_-_60893430_60893440	4.68174	Nkx1-1_Nkx1-2	ENSMUST00000135107.2|Sox3|ENSMUSG00000045179.8|SRY-box containing gene 3
mm10_v2_chr5_+_140607334_140607352	2.11934	Nkx1-1_Nkx1-2	ENSMUST00000031555.1|Lfng|ENSMUSG00000029570.1|LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase
mm10_v2_chr16_+_52031549_52031570	1.92952	Nkx1-1_Nkx1-2	ENSMUST00000114471.1|Cblb|ENSMUSG00000022637.10|Casitas B-lineage lymphoma b
mm10_v2_chr4_-_141599835_141600032	1.83768	Nkx1-1_Nkx1-2	ENSMUST00000141518.1|Fblim1|ENSMUSG00000006219.6|filamin binding LIM protein 1 	ENSMUST00000127455.1|Fblim1|ENSMUSG00000006219.6|filamin binding LIM protein 1 	ENSMUST00000105784.1|Fblim1|ENSMUSG00000006219.6|filamin binding LIM protein 1 	ENSMUST00000147785.1|Fblim1|ENSMUSG00000006219.6|filamin binding LIM protein 1
mm10_v2_chr13_-_102906046_102906111	1.76871	Nkx1-1_Nkx1-2	ENSMUST00000171791.1|Mast4|ENSMUSG00000034751.9|microtubule associated serine/threonine kinase family member 4
mm10_v2_chr12_-_40037387_40037429	1.74643	Nkx1-1_Nkx1-2	ENSMUST00000146905.1|Arl4a|ENSMUSG00000047446.12|ADP-ribosylation factor-like 4A
mm10_v2_chr7_-_143460989_143461050	1.69708	Nkx1-1_Nkx1-2	ENSMUST00000167912.1|Cdkn1c|ENSMUSG00000037664.6|cyclin-dependent kinase inhibitor 1C (P57) 	ENSMUST00000037287.6|Cdkn1c|ENSMUSG00000037664.6|cyclin-dependent kinase inhibitor 1C (P57)
mm10_v2_chr13_-_102905740_102905814	1.58639	Nkx1-1_Nkx1-2	ENSMUST00000167462.1|Mast4|ENSMUSG00000034751.9|microtubule associated serine/threonine kinase family member 4
mm10_v2_chr14_+_46760526_46760557	1.51054	Nkx1-1_Nkx1-2	ENSMUST00000067426.4|Cdkn3|ENSMUSG00000037628.9|cyclin-dependent kinase inhibitor 3
mm10_v2_chr5_+_9100681_9100778	1.46903	Nkx1-1_Nkx1-2	ENSMUST00000115365.1|Tmem243|ENSMUSG00000079659.1|transmembrane protein 243, mitochondrial
mm10_v2_chr11_+_43682038_43682060	1.39294	Nkx1-1_Nkx1-2	ENSMUST00000094294.4|Pwwp2a|ENSMUSG00000044950.7|PWWP domain containing 2A
mm10_v2_chr11_+_43681998_43682036	1.38837	Nkx1-1_Nkx1-2	ENSMUST00000061070.5|Pwwp2a|ENSMUSG00000044950.7|PWWP domain containing 2A
mm10_v2_chr14_-_8666236_8666279	1.35619	Nkx1-1_Nkx1-2	ENSMUST00000102996.3|4930452B06Rik|ENSMUSG00000021747.11|RIKEN cDNA 4930452B06 gene
mm10_v2_chr19_+_5490475_5490487	1.174	Nkx1-1_Nkx1-2	ENSMUST00000116560.2|Cfl1|ENSMUSG00000056201.6|cofilin 1, non-muscle
mm10_v2_chr11_-_87108656_87108719	0.912211	Nkx1-1_Nkx1-2	ENSMUST00000051395.8|Prr11|ENSMUSG00000020493.8|proline rich 11
mm10_v2_chr18_+_4993795_4993819	0.895315	Nkx1-1_Nkx1-2	ENSMUST00000153016.1|Svil|ENSMUSG00000024236.11|supervillin
mm10_v2_chrX_+_106015699_106015759	0.881347	Nkx1-1_Nkx1-2	ENSMUST00000033582.4|Cox7b|ENSMUSG00000031231.4|cytochrome c oxidase subunit VIIb
mm10_v2_chr11_+_87109221_87109239	0.876404	Nkx1-1_Nkx1-2	ENSMUST00000020794.5|Ska2|ENSMUSG00000020492.5|spindle and kinetochore associated complex subunit 2
mm10_v2_chr14_-_5863663_5863663	0.82738	Nkx1-1_Nkx1-2	ENSMUST00000178594.1|Gm8237|ENSMUSG00000090707.2|predicted gene 8237
mm10_v2_chr3_+_94372794_94372872	0.806056	Nkx1-1_Nkx1-2	ENSMUST00000029795.3|Rorc|ENSMUSG00000028150.8|RAR-related orphan receptor gamma
mm10_v2_chr10_-_88146867_88146941	0.79844	Nkx1-1_Nkx1-2	ENSMUST00000164121.1|Parpbp|ENSMUSG00000035365.9|PARP1 binding protein 	ENSMUST00000164803.1|Parpbp|ENSMUSG00000035365.9|PARP1 binding protein 	ENSMUST00000168163.1|Parpbp|ENSMUSG00000035365.9|PARP1 binding protein 	ENSMUST00000048518.9|Parpbp|ENSMUSG00000035365.9|PARP1 binding protein
mm10_v2_chr9_+_66126611_66126649	0.754471	Nkx1-1_Nkx1-2	ENSMUST00000034945.5|Fam96a|ENSMUSG00000032381.5|family with sequence similarity 96, member A
mm10_v2_chr6_-_124779686_124779742	0.753472	Nkx1-1_Nkx1-2	ENSMUST00000147669.1|Lrrc23|ENSMUSG00000030125.5|leucine rich repeat containing 23 	ENSMUST00000128697.1|Lrrc23|ENSMUSG00000030125.5|leucine rich repeat containing 23 	ENSMUST00000032218.3|Lrrc23|ENSMUSG00000030125.5|leucine rich repeat containing 23 	ENSMUST00000112475.2|Lrrc23|ENSMUSG00000030125.5|leucine rich repeat containing 23
mm10_v2_chr11_-_21371143_21371221	0.624635	Nkx1-1_Nkx1-2	ENSMUST00000060895.5|Ugp2|ENSMUSG00000001891.10|UDP-glucose pyrophosphorylase 2
mm10_v2_chr14_-_52104015_52104028	0.616602	Nkx1-1_Nkx1-2	ENSMUST00000111610.4|Hnrnpc|ENSMUSG00000060373.8|heterogeneous nuclear ribonucleoprotein C 	ENSMUST00000164655.1|Hnrnpc|ENSMUSG00000060373.8|heterogeneous nuclear ribonucleoprotein C
mm10_v2_chr4_-_140774196_140774236	0.609233	Nkx1-1_Nkx1-2	ENSMUST00000026381.6|Padi4|ENSMUSG00000025330.6|peptidyl arginine deiminase, type IV
mm10_v2_chr7_-_27195727_27195768	0.608626	Nkx1-1_Nkx1-2	ENSMUST00000163311.2|Snrpa|ENSMUSG00000061479.9|small nuclear ribonucleoprotein polypeptide A 	ENSMUST00000126211.1|Snrpa|ENSMUSG00000061479.9|small nuclear ribonucleoprotein polypeptide A
mm10_v2_chr17_-_48432723_48432741	0.602638	Nkx1-1_Nkx1-2	ENSMUST00000046549.3|Apobec2|ENSMUSG00000040694.3|apolipoprotein B mRNA editing enzyme, catalytic polypeptide 2
mm10_v2_chr4_-_119294520_119294604	0.601154	Nkx1-1_Nkx1-2	ENSMUST00000079644.6|Ybx1|ENSMUSG00000028639.8|Y box protein 1
mm10_v2_chr14_-_59365410_59365461	0.593751	Nkx1-1_Nkx1-2	ENSMUST00000161031.1|Phf11d|ENSMUSG00000068245.8|PHD finger protein 11D 	ENSMUST00000160425.1|Phf11d|ENSMUSG00000068245.8|PHD finger protein 11D
mm10_v2_chr10_+_128337761_128337832	0.580699	Nkx1-1_Nkx1-2	ENSMUST00000005826.7|Cs|ENSMUSG00000005683.7|citrate synthase
mm10_v2_chr7_+_128744870_128745020	0.570798	Nkx1-1_Nkx1-2	ENSMUST00000042942.8|Sec23ip|ENSMUSG00000055319.7|Sec23 interacting protein
mm10_v2_chr5_+_138187485_138187521	0.564596	Nkx1-1_Nkx1-2	ENSMUST00000110934.2|Cnpy4|ENSMUSG00000036968.9|canopy 4 homolog (zebrafish)
mm10_v2_chr9_-_100486788_100486788	0.543935	Nkx1-1_Nkx1-2	ENSMUST00000098458.3|Il20rb|ENSMUSG00000044244.12|interleukin 20 receptor beta
mm10_v2_chr2_-_69712461_69712606	0.495565	Nkx1-1_Nkx1-2	ENSMUST00000102706.3|Fastkd1|ENSMUSG00000027086.10|FAST kinase domains 1 	ENSMUST00000073152.6|Fastkd1|ENSMUSG00000027086.10|FAST kinase domains 1
mm10_v2_chr1_+_174501796_174501843	0.49501	Nkx1-1_Nkx1-2	ENSMUST00000030039.7|Fmn2|ENSMUSG00000028354.8|formin 2
mm10_v2_chr3_-_89101907_89101969	0.480402	Nkx1-1_Nkx1-2	ENSMUST00000081848.8|Fdps|ENSMUSG00000059743.8|farnesyl diphosphate synthetase
mm10_v2_chr7_+_101896340_101896431	0.480386	Nkx1-1_Nkx1-2	ENSMUST00000035395.7|Anapc15|ENSMUSG00000030649.11|anaphase prompoting complex C subunit 15 	ENSMUST00000106973.1|Anapc15|ENSMUSG00000030649.11|anaphase prompoting complex C subunit 15 	ENSMUST00000144207.1|Anapc15|ENSMUSG00000030649.11|anaphase prompoting complex C subunit 15
mm10_v2_chr10_+_94575257_94575295	0.460463	Nkx1-1_Nkx1-2	ENSMUST00000121471.1|Tmcc3|ENSMUSG00000020023.11|transmembrane and coiled coil domains 3
mm10_v2_chr12_+_52699297_52699411	0.453376	Nkx1-1_Nkx1-2	ENSMUST00000095737.3|Akap6|ENSMUSG00000061603.7|A kinase (PRKA) anchor protein 6
mm10_v2_chr5_+_138116903_138117041	0.446261	Nkx1-1_Nkx1-2	ENSMUST00000062350.8|Zscan21|ENSMUSG00000037017.9|zinc finger and SCAN domain containing 21 	ENSMUST00000110961.2|Zscan21|ENSMUSG00000037017.9|zinc finger and SCAN domain containing 21 	ENSMUST00000080732.3|Zscan21|ENSMUSG00000037017.9|zinc finger and SCAN domain containing 21 	ENSMUST00000110960.2|Zscan21|ENSMUSG00000037017.9|zinc finger and SCAN domain containing 21 	ENSMUST00000142185.1|Zscan21|ENSMUSG00000037017.9|zinc finger and SCAN domain containing 21 	ENSMUST00000136425.1|Zscan21|ENSMUSG00000037017.9|zinc finger and SCAN domain containing 21 	ENSMUST00000110959.1|Zscan21|ENSMUSG00000037017.9|zinc finger and SCAN domain containing 21
mm10_v2_chr2_+_119047116_119047121	0.388282	Nkx1-1_Nkx1-2	ENSMUST00000152380.1|Casc5|ENSMUSG00000027326.7|cancer susceptibility candidate 5 	ENSMUST00000099542.2|Casc5|ENSMUSG00000027326.7|cancer susceptibility candidate 5
mm10_v2_chr8_+_33599608_33599655	0.383911	Nkx1-1_Nkx1-2	ENSMUST00000009774.9|Ppp2cb|ENSMUSG00000009630.9|protein phosphatase 2 (formerly 2A), catalytic subunit, beta isoform
mm10_v2_chr12_+_84417196_84417254	0.383455	Nkx1-1_Nkx1-2	ENSMUST00000183146.1|Rnf113a2|ENSMUSG00000098134.1|ring finger protein 113A2
mm10_v2_chr14_+_4198185_4198185	0.351321	Nkx1-1_Nkx1-2	ENSMUST00000180184.1|Gm2974|ENSMUSG00000079391.4|predicted gene 2974
mm10_v2_chr11_-_99230998_99231019	0.337606	Nkx1-1_Nkx1-2	ENSMUST00000103133.3|Smarce1|ENSMUSG00000037935.10|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1
mm10_v2_chr3_-_90389884_90389927	0.332168	Nkx1-1_Nkx1-2	ENSMUST00000029541.5|Slc27a3|ENSMUSG00000027932.8|solute carrier family 27 (fatty acid transporter), member 3
mm10_v2_chr10_+_88146992_88147037	0.330306	Nkx1-1_Nkx1-2	ENSMUST00000052355.7|Nup37|ENSMUSG00000035351.9|nucleoporin 37
mm10_v2_chr4_-_14621669_14621786	0.326332	Nkx1-1_Nkx1-2	ENSMUST00000143105.1|Slc26a7|ENSMUSG00000040569.7|solute carrier family 26, member 7
mm10_v2_chr14_-_6266620_6266620	0.321233	Nkx1-1_Nkx1-2	ENSMUST00000096172.5|Gm3411|ENSMUSG00000079396.3|predicted gene 3411
mm10_v2_chr10_+_88147061_88147076	0.314434	Nkx1-1_Nkx1-2	ENSMUST00000169309.1|Nup37|ENSMUSG00000035351.9|nucleoporin 37
mm10_v2_chr17_-_63863791_63863791	0.302879	Nkx1-1_Nkx1-2	ENSMUST00000050753.3|A930002H24Rik|ENSMUSG00000045506.3|RIKEN cDNA A930002H24 gene
mm10_v2_chr11_-_43747963_43748015	0.29346	Nkx1-1_Nkx1-2	ENSMUST00000048578.2|Ttc1|ENSMUSG00000041278.4|tetratricopeptide repeat domain 1 	ENSMUST00000109278.1|Ttc1|ENSMUSG00000041278.4|tetratricopeptide repeat domain 1
mm10_v2_chr7_+_101896817_101896961	0.288684	Nkx1-1_Nkx1-2	ENSMUST00000143835.1|Anapc15|ENSMUSG00000030649.11|anaphase prompoting complex C subunit 15
mm10_v2_chr15_+_81663889_81663958	0.268633	Nkx1-1_Nkx1-2	ENSMUST00000023029.8|L3mbtl2|ENSMUSG00000022394.8|l(3)mbt-like 2 (Drosophila) 	ENSMUST00000174229.1|L3mbtl2|ENSMUSG00000022394.8|l(3)mbt-like 2 (Drosophila) 	ENSMUST00000172748.1|L3mbtl2|ENSMUSG00000022394.8|l(3)mbt-like 2 (Drosophila)
mm10_v2_chr2_+_119047129_119047159	0.253458	Nkx1-1_Nkx1-2	ENSMUST00000153300.1|Casc5|ENSMUSG00000027326.7|cancer susceptibility candidate 5 	ENSMUST00000028799.5|Casc5|ENSMUSG00000027326.7|cancer susceptibility candidate 5
mm10_v2_chr2_-_37703845_37703885	0.252047	Nkx1-1_Nkx1-2	ENSMUST00000155237.1|Strbp|ENSMUSG00000026915.10|spermatid perinuclear RNA binding protein
mm10_v2_chr9_-_107872403_107872422	0.235311	Nkx1-1_Nkx1-2	ENSMUST00000183035.1|Rbm6|ENSMUSG00000032582.8|RNA binding motif protein 6
mm10_v2_chr17_-_57031468_57031538	0.205826	Nkx1-1_Nkx1-2	ENSMUST00000007814.8|Khsrp|ENSMUSG00000007670.9|KH-type splicing regulatory protein
mm10_v2_chr7_-_100964371_100964395	0.180001	Nkx1-1_Nkx1-2	ENSMUST00000060174.4|P2ry6|ENSMUSG00000048779.4|pyrimidinergic receptor P2Y, G-protein coupled, 6
mm10_v2_chr4_-_132075250_132075292	0.178925	Nkx1-1_Nkx1-2	ENSMUST00000105970.1|Epb4.1|ENSMUSG00000028906.9|erythrocyte protein band 4.1 	ENSMUST00000105975.1|Epb4.1|ENSMUSG00000028906.9|erythrocyte protein band 4.1
mm10_v2_chr1_-_172027269_172027313	0.176813	Nkx1-1_Nkx1-2	ENSMUST00000027837.6|Vangl2|ENSMUSG00000026556.9|vang-like 2 (van gogh, Drosophila) 	ENSMUST00000111264.1|Vangl2|ENSMUSG00000026556.9|vang-like 2 (van gogh, Drosophila)
mm10_v2_chr11_+_121237216_121237289	0.173422	Nkx1-1_Nkx1-2	ENSMUST00000103015.3|Narf|ENSMUSG00000000056.7|nuclear prelamin A recognition factor
mm10_v2_chr2_-_132247747_132247807	0.168326	Nkx1-1_Nkx1-2	ENSMUST00000110163.1|Tmem230|ENSMUSG00000027341.4|transmembrane protein 230 	ENSMUST00000180286.1|Tmem230|ENSMUSG00000027341.4|transmembrane protein 230 	ENSMUST00000028816.2|Tmem230|ENSMUSG00000027341.4|transmembrane protein 230
mm10_v2_chr9_-_20959785_20959888	0.167139	Nkx1-1_Nkx1-2	ENSMUST00000177754.1|Dnmt1|ENSMUSG00000004099.9|DNA methyltransferase (cytosine-5) 1
mm10_v2_chr2_-_165388245_165388315	0.164856	Nkx1-1_Nkx1-2	ENSMUST00000103084.3|Zfp334|ENSMUSG00000017667.9|zinc finger protein 334
mm10_v2_chr9_-_55919605_55919605	0.137658	Nkx1-1_Nkx1-2	ENSMUST00000037408.8|Scaper|ENSMUSG00000034007.9|S phase cyclin A-associated protein in the ER
mm10_v2_chr3_-_34351685_34351715	0.125785	Nkx1-1_Nkx1-2	ENSMUST00000174114.1|Gm20514|ENSMUSG00000092355.1|predicted gene 20514
mm10_v2_chr16_-_16359016_16359040	0.113929	Nkx1-1_Nkx1-2	ENSMUST00000023477.7|Dnm1l|ENSMUSG00000022789.8|dynamin 1-like 	ENSMUST00000096229.3|Dnm1l|ENSMUSG00000022789.8|dynamin 1-like 	ENSMUST00000115749.1|Dnm1l|ENSMUSG00000022789.8|dynamin 1-like
mm10_v2_chr6_+_37870786_37870882	0.109923	Nkx1-1_Nkx1-2	ENSMUST00000120428.1|Trim24|ENSMUSG00000029833.11|tripartite motif-containing 24 	ENSMUST00000031859.7|Trim24|ENSMUSG00000029833.11|tripartite motif-containing 24
mm10_v2_chr7_+_51880312_51880356	0.0949434	Nkx1-1_Nkx1-2	ENSMUST00000145049.1|Gas2|ENSMUSG00000030498.8|growth arrest specific 2
mm10_v2_chr2_+_151494182_151494203	0.0894334	Nkx1-1_Nkx1-2	ENSMUST00000089140.6|Nsfl1c|ENSMUSG00000027455.10|NSFL1 (p97) cofactor (p47)
mm10_v2_chr19_+_29367447_29367468	0.0814738	Nkx1-1_Nkx1-2	ENSMUST00000016640.7|Cd274|ENSMUSG00000016496.7|CD274 antigen
mm10_v2_chr5_-_137072254_137072277	0.0648492	Nkx1-1_Nkx1-2	ENSMUST00000077523.3|Serpine1|ENSMUSG00000037411.4|serine (or cysteine) peptidase inhibitor, clade E, member 1 	ENSMUST00000041388.4|Serpine1|ENSMUSG00000037411.4|serine (or cysteine) peptidase inhibitor, clade E, member 1
mm10_v2_chr5_-_118244861_118245116	0.0630597	Nkx1-1_Nkx1-2	ENSMUST00000117177.1|Rnft2|ENSMUSG00000032850.10|ring finger protein, transmembrane 2 	ENSMUST00000133372.1|Rnft2|ENSMUSG00000032850.10|ring finger protein, transmembrane 2 	ENSMUST00000154786.1|Rnft2|ENSMUSG00000032850.10|ring finger protein, transmembrane 2 	ENSMUST00000121369.1|Rnft2|ENSMUSG00000032850.10|ring finger protein, transmembrane 2
mm10_v2_chr7_-_30552255_30552316	0.0523565	Nkx1-1_Nkx1-2	ENSMUST00000108165.1|BC053749|ENSMUSG00000036864.8|cDNA sequence BC053749 	ENSMUST00000153594.1|BC053749|ENSMUSG00000036864.8|cDNA sequence BC053749
mm10_v2_chrX_-_160138375_160138435	0.0493984	Nkx1-1_Nkx1-2	ENSMUST00000033662.8|Pdha1|ENSMUSG00000031299.10|pyruvate dehydrogenase E1 alpha 1
mm10_v2_chr7_+_29983948_29983964	0.0397566	Nkx1-1_Nkx1-2	ENSMUST00000148442.1|Zfp568|ENSMUSG00000074221.5|zinc finger protein 568
mm10_v2_chr8_+_83972951_83973028	0.0287385	Nkx1-1_Nkx1-2	ENSMUST00000005606.6|Prkaca|ENSMUSG00000005469.9|protein kinase, cAMP dependent, catalytic, alpha
mm10_v2_chr9_-_44113470_44113528	0.0282828	Nkx1-1_Nkx1-2	ENSMUST00000056328.5|Rnf26|ENSMUSG00000053128.8|ring finger protein 26
mm10_v2_chr19_+_41933464_41933540	0.0246731	Nkx1-1_Nkx1-2	ENSMUST00000026154.7|Zdhhc16|ENSMUSG00000025157.7|zinc finger, DHHC domain containing 16
mm10_v2_chr5_+_115605642_115605696	0.0225432	Nkx1-1_Nkx1-2	ENSMUST00000094427.3|Gcn1l1|ENSMUSG00000041638.12|GCN1 general control of amino-acid synthesis 1-like 1 (yeast)
mm10_v2_chr5_-_34660068_34660148	0.0210062	Nkx1-1_Nkx1-2	ENSMUST00000041364.9|Nop14|ENSMUSG00000036693.9|NOP14 nucleolar protein
mm10_v2_chr14_+_118854695_118854732	0.0181467	Nkx1-1_Nkx1-2	ENSMUST00000100314.3|Cldn10|ENSMUSG00000022132.9|claudin 10
mm10_v2_chr12_+_4769278_4769338	0.00574568	Nkx1-1_Nkx1-2	ENSMUST00000020967.4|Pfn4|ENSMUSG00000020639.7|profilin family, member 4
