mm10_v2_chr14_+_75455957_75455996	1.0545	Nkx2-9	ENSMUST00000164848.1|Siah3|ENSMUSG00000091722.1|seven in absentia homolog 3 (Drosophila)
mm10_v2_chr11_+_117849223_117849251	0.963422	Nkx2-9	ENSMUST00000081387.4|Birc5|ENSMUSG00000017716.9|baculoviral IAP repeat-containing 5
mm10_v2_chr10_+_88091070_88091076	0.953982	Nkx2-9	ENSMUST00000048621.7|Pmch|ENSMUSG00000035383.7|pro-melanin-concentrating hormone
mm10_v2_chr16_-_33380717_33380755	0.758599	Nkx2-9	ENSMUST00000180923.1|1700007L15Rik|ENSMUSG00000097318.1|RIKEN cDNA 1700007L15 gene
mm10_v2_chrX_-_165004829_165004829	0.73699	Nkx2-9	ENSMUST00000114890.2|Gm17604|ENSMUSG00000079600.2|predicted gene, 17604
mm10_v2_chr2_+_173022360_173022438	0.724049	Nkx2-9	ENSMUST00000173997.1|Rbm38|ENSMUSG00000027510.11|RNA binding motif protein 38
mm10_v2_chrX_+_135993820_135993820	0.720759	Nkx2-9	ENSMUST00000058119.7|Arxes2|ENSMUSG00000048040.7|adipocyte-related X-chromosome expressed sequence 2
mm10_v2_chr4_+_36952930_36952970	0.714558	Nkx2-9	ENSMUST00000144029.1|Gm12371|ENSMUSG00000084898.1|predicted gene 12371
mm10_v2_chr2_-_129699833_129699850	0.690227	Nkx2-9	ENSMUST00000028883.5|Pdyn|ENSMUSG00000027400.5|prodynorphin
mm10_v2_chr2_-_152398046_152398076	0.633737	Nkx2-9	ENSMUST00000063332.8|Sox12|ENSMUSG00000051817.8|SRY-box containing gene 12 	ENSMUST00000182625.1|Sox12|ENSMUSG00000051817.8|SRY-box containing gene 12
mm10_v2_chr11_+_117849286_117849340	0.577729	Nkx2-9	ENSMUST00000093906.4|Birc5|ENSMUSG00000017716.9|baculoviral IAP repeat-containing 5
mm10_v2_chr4_-_72852622_72852648	0.526996	Nkx2-9	ENSMUST00000179234.1|Aldoart1|ENSMUSG00000059343.4|aldolase 1 A, retrogene 1 	ENSMUST00000078617.4|Aldoart1|ENSMUSG00000059343.4|aldolase 1 A, retrogene 1
mm10_v2_chr11_+_88718442_88718645	0.520788	Nkx2-9	ENSMUST00000138007.1|C030037D09Rik|ENSMUSG00000087574.1|RIKEN cDNA C030037D09 gene
mm10_v2_chr11_-_100759740_100759754	0.505682	Nkx2-9	ENSMUST00000107361.2|Kcnh4|ENSMUSG00000035355.9|potassium voltage-gated channel, subfamily H (eag-related), member 4
mm10_v2_chr7_+_4925802_4925868	0.490269	Nkx2-9	ENSMUST00000057612.7|Ssc5d|ENSMUSG00000035279.7|scavenger receptor cysteine rich domain containing (5 domains)
mm10_v2_chr3_-_37125943_37125969	0.475262	Nkx2-9	ENSMUST00000029275.5|Il2|ENSMUSG00000027720.7|interleukin 2
mm10_v2_chrX_-_95658392_95658412	0.467058	Nkx2-9	ENSMUST00000120620.1|Zc4h2|ENSMUSG00000035062.7|zinc finger, C4H2 domain containing
mm10_v2_chr10_+_14523062_14523065	0.45808	Nkx2-9	ENSMUST00000096020.5|Gm10335|ENSMUSG00000071532.5|predicted gene 10335
mm10_v2_chr18_+_77185815_77185879	0.456273	Nkx2-9	ENSMUST00000079618.4|St8sia5|ENSMUSG00000025425.11|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5
mm10_v2_chr7_-_142576492_142576538	0.44754	Nkx2-9	ENSMUST00000140716.1|H19|ENSMUSG00000000031.9|H19 fetal liver mRNA
mm10_v2_chr4_-_21685782_21685805	0.441717	Nkx2-9	ENSMUST00000076206.4|Prdm13|ENSMUSG00000040478.8|PR domain containing 13
mm10_v2_chr13_-_71963713_71963729	0.440244	Nkx2-9	ENSMUST00000077337.8|Irx1|ENSMUSG00000060969.8|Iroquois related homeobox 1 (Drosophila)
mm10_v2_chr7_-_101921186_101921230	0.429869	Nkx2-9	ENSMUST00000106965.1|Lrrc51|ENSMUSG00000064307.6|leucine rich repeat containing 51 	ENSMUST00000106968.1|Lrrc51|ENSMUSG00000064307.6|leucine rich repeat containing 51 	ENSMUST00000106967.1|Lrrc51|ENSMUSG00000064307.6|leucine rich repeat containing 51
mm10_v2_chrX_-_95658379_95658390	0.426446	Nkx2-9	ENSMUST00000119640.1|Zc4h2|ENSMUSG00000035062.7|zinc finger, C4H2 domain containing
mm10_v2_chr8_+_95633500_95633586	0.426244	Nkx2-9	ENSMUST00000034094.9|Gins3|ENSMUSG00000031669.9|GINS complex subunit 3 (Psf3 homolog)
mm10_v2_chr10_+_94198955_94199043	0.413269	Nkx2-9	ENSMUST00000020209.9|Ndufa12|ENSMUSG00000020022.10|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12 	ENSMUST00000179990.1|Ndufa12|ENSMUSG00000020022.10|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12
mm10_v2_chr13_+_93304940_93305278	0.409095	Nkx2-9	ENSMUST00000109497.1|Homer1|ENSMUSG00000007617.11|homer homolog 1 (Drosophila) 	ENSMUST00000109498.1|Homer1|ENSMUSG00000007617.11|homer homolog 1 (Drosophila) 	ENSMUST00000060490.4|Homer1|ENSMUSG00000007617.11|homer homolog 1 (Drosophila) 	ENSMUST00000109492.1|Homer1|ENSMUSG00000007617.11|homer homolog 1 (Drosophila) 	ENSMUST00000109496.1|Homer1|ENSMUSG00000007617.11|homer homolog 1 (Drosophila) 	ENSMUST00000109495.1|Homer1|ENSMUSG00000007617.11|homer homolog 1 (Drosophila)
mm10_v2_chr17_+_46496753_46496809	0.382476	Nkx2-9	ENSMUST00000046497.6|Dnph1|ENSMUSG00000040658.6|2'-deoxynucleoside 5'-phosphate N-hydrolase 1
mm10_v2_chrX_-_95658416_95658509	0.376748	Nkx2-9	ENSMUST00000044382.6|Zc4h2|ENSMUSG00000035062.7|zinc finger, C4H2 domain containing
mm10_v2_chr16_-_76403673_76403717	0.35828	Nkx2-9	ENSMUST00000052867.7|Gm9843|ENSMUSG00000050299.7|predicted gene 9843
mm10_v2_chr5_+_30105161_30105219	0.352901	Nkx2-9	ENSMUST00000058045.4|Gareml|ENSMUSG00000044576.6|GRB2 associated, regulator of MAPK1-like
mm10_v2_chr19_-_43752924_43753001	0.343366	Nkx2-9	ENSMUST00000045562.5|Cox15|ENSMUSG00000040018.9|cytochrome c oxidase assembly protein 15
mm10_v2_chr7_-_101921175_101921183	0.339416	Nkx2-9	ENSMUST00000098236.2|Lrrc51|ENSMUSG00000064307.6|leucine rich repeat containing 51
mm10_v2_chr7_+_30280094_30280188	0.318253	Nkx2-9	ENSMUST00000108187.1|Thap8|ENSMUSG00000013928.6|THAP domain containing 8 	ENSMUST00000014072.5|Thap8|ENSMUSG00000013928.6|THAP domain containing 8
mm10_v2_chr8_-_70700070_70700088	0.312657	Nkx2-9	ENSMUST00000116172.1|Gm11175|ENSMUSG00000080058.1|predicted gene 11175
mm10_v2_chrX_+_56779437_56779565	0.306646	Nkx2-9	ENSMUST00000114773.3|Fhl1|ENSMUSG00000023092.10|four and a half LIM domains 1
mm10_v2_chr3_-_95411176_95411176	0.302383	Nkx2-9	ENSMUST00000177599.1|Gm5070|ENSMUSG00000096177.1|predicted gene 5070
mm10_v2_chr4_+_44981389_44981461	0.296486	Nkx2-9	ENSMUST00000045078.6|Grhpr|ENSMUSG00000035637.8|glyoxylate reductase/hydroxypyruvate reductase 	ENSMUST00000128973.1|Grhpr|ENSMUSG00000035637.8|glyoxylate reductase/hydroxypyruvate reductase 	ENSMUST00000151148.1|Grhpr|ENSMUSG00000035637.8|glyoxylate reductase/hydroxypyruvate reductase
mm10_v2_chr17_+_34644764_34644797	0.293445	Nkx2-9	ENSMUST00000036720.8|Fkbpl|ENSMUSG00000033739.8|FK506 binding protein-like
mm10_v2_chr11_+_83409137_83409289	0.292634	Nkx2-9	ENSMUST00000021022.3|Rasl10b|ENSMUSG00000020684.8|RAS-like, family 10, member B
mm10_v2_chrX_-_102189371_102189394	0.282782	Nkx2-9	ENSMUST00000033683.7|Rps4x|ENSMUSG00000031320.9|ribosomal protein S4, X-linked
mm10_v2_chr9_+_75775355_75775378	0.279325	Nkx2-9	ENSMUST00000012281.7|Bmp5|ENSMUSG00000032179.7|bone morphogenetic protein 5
mm10_v2_chr2_+_181767040_181767073	0.277548	Nkx2-9	ENSMUST00000108756.1|Myt1|ENSMUSG00000010505.9|myelin transcription factor 1
mm10_v2_chr18_-_35662180_35662195	0.274422	Nkx2-9	ENSMUST00000025209.4|Spata24|ENSMUSG00000024352.5|spermatogenesis associated 24 	ENSMUST00000096573.2|Spata24|ENSMUSG00000024352.5|spermatogenesis associated 24
mm10_v2_chr16_+_30065333_30065351	0.272925	Nkx2-9	ENSMUST00000023171.7|Hes1|ENSMUSG00000022528.7|hairy and enhancer of split 1 (Drosophila)
mm10_v2_chrX_+_7899350_7899362	0.251146	Nkx2-9	ENSMUST00000033498.3|Timm17b|ENSMUSG00000031158.5|translocase of inner mitochondrial membrane 17b
mm10_v2_chr8_-_79399513_79399532	0.250661	Nkx2-9	ENSMUST00000066091.7|Smad1|ENSMUSG00000031681.8|SMAD family member 1 	ENSMUST00000109885.1|Smad1|ENSMUSG00000031681.8|SMAD family member 1 	ENSMUST00000066081.3|Smad1|ENSMUSG00000031681.8|SMAD family member 1
mm10_v2_chr5_-_45639501_45639525	0.244538	Nkx2-9	ENSMUST00000016023.7|Fam184b|ENSMUSG00000015879.7|family with sequence similarity 184, member B
mm10_v2_chr16_-_46155077_46155077	0.236663	Nkx2-9	ENSMUST00000059524.5|Gm4737|ENSMUSG00000048087.5|predicted gene 4737
mm10_v2_chr2_+_103969528_103969567	0.236515	Nkx2-9	ENSMUST00000123437.1|Lmo2|ENSMUSG00000032698.9|LIM domain only 2 	ENSMUST00000163256.1|Lmo2|ENSMUSG00000032698.9|LIM domain only 2
mm10_v2_chr11_+_72607221_72607307	0.232242	Nkx2-9	ENSMUST00000021148.6|Ube2g1|ENSMUSG00000020794.7|ubiquitin-conjugating enzyme E2G 1 	ENSMUST00000138247.1|Ube2g1|ENSMUSG00000020794.7|ubiquitin-conjugating enzyme E2G 1
mm10_v2_chr15_-_98918131_98918231	0.220047	Nkx2-9	ENSMUST00000023736.8|Lmbr1l|ENSMUSG00000022999.8|limb region 1 like
mm10_v2_chr11_+_114668524_114668626	0.219894	Nkx2-9	ENSMUST00000106602.3|Rpl38|ENSMUSG00000057322.6|ribosomal protein L38 	ENSMUST00000077915.3|Rpl38|ENSMUSG00000057322.6|ribosomal protein L38 	ENSMUST00000106599.1|Rpl38|ENSMUSG00000057322.6|ribosomal protein L38 	ENSMUST00000082092.4|Rpl38|ENSMUSG00000057322.6|ribosomal protein L38
mm10_v2_chrX_-_49788204_49788243	0.21649	Nkx2-9	ENSMUST00000114893.1|Igsf1|ENSMUSG00000031111.10|immunoglobulin superfamily, member 1
mm10_v2_chr9_-_106887000_106887094	0.213504	Nkx2-9	ENSMUST00000055843.7|Rbm15b|ENSMUSG00000045365.7|RNA binding motif protein 15B
mm10_v2_chr14_+_53665912_53665946	0.209787	Nkx2-9	ENSMUST00000181768.1|Trav3-3|ENSMUSG00000094828.4|T cell receptor alpha variable 3-3
mm10_v2_chr19_+_43752996_43753137	0.198936	Nkx2-9	ENSMUST00000026199.7|Cutc|ENSMUSG00000025193.8|cutC copper transporter homolog (E.coli) 	ENSMUST00000112047.3|Cutc|ENSMUSG00000025193.8|cutC copper transporter homolog (E.coli) 	ENSMUST00000153295.1|Cutc|ENSMUSG00000025193.8|cutC copper transporter homolog (E.coli)
mm10_v2_chr2_+_20737306_20737321	0.196732	Nkx2-9	ENSMUST00000114606.1|Etl4|ENSMUSG00000036617.10|enhancer trap locus 4 	ENSMUST00000114608.1|Etl4|ENSMUSG00000036617.10|enhancer trap locus 4
mm10_v2_chr2_+_80638798_80638834	0.196289	Nkx2-9	ENSMUST00000028382.6|Nup35|ENSMUSG00000026999.8|nucleoporin 35 	ENSMUST00000124377.1|Nup35|ENSMUSG00000026999.8|nucleoporin 35
mm10_v2_chr15_+_58933774_58933836	0.196163	Nkx2-9	ENSMUST00000022980.3|Ndufb9|ENSMUSG00000022354.3|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9
mm10_v2_chr4_-_41275091_41275144	0.183633	Nkx2-9	ENSMUST00000030143.6|Ubap2|ENSMUSG00000028433.8|ubiquitin-associated protein 2 	ENSMUST00000108068.1|Ubap2|ENSMUSG00000028433.8|ubiquitin-associated protein 2
mm10_v2_chr3_-_89245159_89245199	0.182605	Nkx2-9	ENSMUST00000090924.6|Trim46|ENSMUSG00000042766.11|tripartite motif-containing 46
mm10_v2_chr8_+_123212857_123212911	0.17511	Nkx2-9	ENSMUST00000060133.6|Spata33|ENSMUSG00000048478.6|spermatogenesis associated 33
mm10_v2_chr3_-_89245005_89245031	0.168051	Nkx2-9	ENSMUST00000107464.1|Trim46|ENSMUSG00000042766.11|tripartite motif-containing 46
mm10_v2_chr13_+_72632597_72632625	0.16233	Nkx2-9	ENSMUST00000172353.1|Irx2|ENSMUSG00000001504.9|Iroquois related homeobox 2 (Drosophila)
mm10_v2_chr16_-_92466081_92466187	0.160876	Nkx2-9	ENSMUST00000060005.8|Rcan1|ENSMUSG00000022951.9|regulator of calcineurin 1
mm10_v2_chr10_-_86732409_86732429	0.160258	Nkx2-9	ENSMUST00000070435.4|Fabp3-ps1|ENSMUSG00000056366.4|fatty acid binding protein 3, muscle and heart, pseudogene 1
mm10_v2_chr6_+_135362931_135362961	0.158575	Nkx2-9	ENSMUST00000032330.9|Emp1|ENSMUSG00000030208.9|epithelial membrane protein 1
mm10_v2_chr9_-_60522017_60522058	0.15837	Nkx2-9	ENSMUST00000140824.1|Thsd4|ENSMUSG00000032289.9|thrombospondin, type I, domain containing 4
mm10_v2_chr1_-_131097535_131097576	0.157878	Nkx2-9	ENSMUST00000016672.4|Mapkapk2|ENSMUSG00000016528.4|MAP kinase-activated protein kinase 2
mm10_v2_chr17_-_36058371_36058371	0.150664	Nkx2-9	ENSMUST00000113742.2|Gm11127|ENSMUSG00000079492.2|predicted gene 11127
mm10_v2_chr2_-_165283599_165283620	0.150032	Nkx2-9	ENSMUST00000155289.1|Slc35c2|ENSMUSG00000017664.10|solute carrier family 35, member C2
mm10_v2_chr12_-_56536895_56536937	0.147803	Nkx2-9	ENSMUST00000001536.8|Nkx2-1|ENSMUSG00000001496.9|NK2 homeobox 1
mm10_v2_chr7_+_44848991_44849114	0.146326	Nkx2-9	ENSMUST00000107885.1|Akt1s1|ENSMUSG00000011096.10|AKT1 substrate 1 (proline-rich)
mm10_v2_chr9_-_56161051_56161075	0.145709	Nkx2-9	ENSMUST00000034876.8|Tspan3|ENSMUSG00000032324.10|tetraspanin 3
mm10_v2_chr16_-_59555752_59555752	0.135787	Nkx2-9	ENSMUST00000179383.1|Crybg3|ENSMUSG00000022723.9|beta-gamma crystallin domain containing 3 	ENSMUST00000044604.8|Crybg3|ENSMUSG00000022723.9|beta-gamma crystallin domain containing 3
mm10_v2_chr3_-_34351685_34351715	0.128704	Nkx2-9	ENSMUST00000174114.1|Gm20514|ENSMUSG00000092355.1|predicted gene 20514
mm10_v2_chr6_+_66896480_66896549	0.126163	Nkx2-9	ENSMUST00000114222.1|Gng12|ENSMUSG00000036402.7|guanine nucleotide binding protein (G protein), gamma 12
mm10_v2_chr8_+_95703037_95703063	0.124083	Nkx2-9	ENSMUST00000073139.7|Ndrg4|ENSMUSG00000036564.10|N-myc downstream regulated gene 4 	ENSMUST00000080666.7|Ndrg4|ENSMUSG00000036564.10|N-myc downstream regulated gene 4
mm10_v2_chr7_+_35186370_35186408	0.123923	Nkx2-9	ENSMUST00000135452.1|Slc7a10|ENSMUSG00000030495.6|solute carrier family 7 (cationic amino acid transporter, y+ system), member 10 	ENSMUST00000001854.5|Slc7a10|ENSMUSG00000030495.6|solute carrier family 7 (cationic amino acid transporter, y+ system), member 10
mm10_v2_chr9_+_74861888_74861921	0.121965	Nkx2-9	ENSMUST00000056006.9|Onecut1|ENSMUSG00000043013.9|one cut domain, family member 1
mm10_v2_chr1_+_9545397_9545479	0.117944	Nkx2-9	ENSMUST00000072079.7|Rrs1|ENSMUSG00000061024.7|RRS1 ribosome biogenesis regulator homolog (S. cerevisiae)
mm10_v2_chr5_+_67260565_67260692	0.1178	Nkx2-9	ENSMUST00000037918.5|Tmem33|ENSMUSG00000037720.10|transmembrane protein 33 	ENSMUST00000162543.1|Tmem33|ENSMUSG00000037720.10|transmembrane protein 33
mm10_v2_chrM_+_7759_7927	0.115682	Nkx2-9	ENSMUST00000082407.1|mt-Atp8|ENSMUSG00000064356.3|mitochondrially encoded ATP synthase 8 	ENSMUST00000082408.1|mt-Atp6|ENSMUSG00000064357.1|mitochondrially encoded ATP synthase 6
mm10_v2_chr12_-_24493656_24493656	0.114871	Nkx2-9	ENSMUST00000073088.2|Gm16372|ENSMUSG00000057160.2|predicted pseudogene 16372
mm10_v2_chr17_-_83631892_83631934	0.112043	Nkx2-9	ENSMUST00000051482.1|Kcng3|ENSMUSG00000045053.1|potassium voltage-gated channel, subfamily G, member 3
mm10_v2_chr12_-_71136611_71136701	0.111547	Nkx2-9	ENSMUST00000021486.8|Timm9|ENSMUSG00000021079.9|translocase of inner mitochondrial membrane 9 	ENSMUST00000166120.1|Timm9|ENSMUSG00000021079.9|translocase of inner mitochondrial membrane 9
mm10_v2_chr5_+_67260696_67260711	0.11051	Nkx2-9	ENSMUST00000161233.1|Tmem33|ENSMUSG00000037720.10|transmembrane protein 33 	ENSMUST00000160352.1|Tmem33|ENSMUSG00000037720.10|transmembrane protein 33
mm10_v2_chr6_-_142507805_142507962	0.109394	Nkx2-9	ENSMUST00000134191.1|Ldhb|ENSMUSG00000030246.5|lactate dehydrogenase B 	ENSMUST00000032373.5|Ldhb|ENSMUSG00000030246.5|lactate dehydrogenase B
mm10_v2_chr3_+_138277489_138277495	0.104979	Nkx2-9	ENSMUST00000004232.9|Adh1|ENSMUSG00000074207.4|alcohol dehydrogenase 1 (class I)
mm10_v2_chr7_-_19665005_19665030	0.0998433	Nkx2-9	ENSMUST00000055242.9|Clptm1|ENSMUSG00000002981.9|cleft lip and palate associated transmembrane protein 1
mm10_v2_chr11_-_22982090_22982382	0.0996352	Nkx2-9	ENSMUST00000160826.1|RP23-242C19.7|ENSMUSG00000098650.1|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2 (B3gnt2), transcript variant 2, mRNA 	ENSMUST00000093270.5|Commd1|ENSMUSG00000051355.12|COMM domain containing 1 	ENSMUST00000071068.8|Commd1|ENSMUSG00000051355.12|COMM domain containing 1 	ENSMUST00000159081.1|Commd1|ENSMUSG00000051355.12|COMM domain containing 1
mm10_v2_chr3_+_37420273_37420335	0.0884189	Nkx2-9	ENSMUST00000029277.8|Spata5|ENSMUSG00000027722.8|spermatogenesis associated 5
mm10_v2_chr1_-_181842334_181842401	0.0882402	Nkx2-9	ENSMUST00000005003.6|Lbr|ENSMUSG00000004880.6|lamin B receptor
mm10_v2_chr4_+_155891822_155891892	0.0844737	Nkx2-9	ENSMUST00000105584.3|Acap3|ENSMUSG00000029033.10|ArfGAP with coiled-coil, ankyrin repeat and PH domains 3 	ENSMUST00000079031.5|Acap3|ENSMUSG00000029033.10|ArfGAP with coiled-coil, ankyrin repeat and PH domains 3
mm10_v2_chr15_+_100469034_100469075	0.0807246	Nkx2-9	ENSMUST00000037001.8|Letmd1|ENSMUSG00000037353.8|LETM1 domain containing 1
mm10_v2_chr6_+_66896397_66896479	0.068385	Nkx2-9	ENSMUST00000043148.6|Gng12|ENSMUSG00000036402.7|guanine nucleotide binding protein (G protein), gamma 12 	ENSMUST00000114228.1|Gng12|ENSMUSG00000036402.7|guanine nucleotide binding protein (G protein), gamma 12 	ENSMUST00000114227.1|Gng12|ENSMUSG00000036402.7|guanine nucleotide binding protein (G protein), gamma 12 	ENSMUST00000114226.1|Gng12|ENSMUSG00000036402.7|guanine nucleotide binding protein (G protein), gamma 12 	ENSMUST00000114225.1|Gng12|ENSMUSG00000036402.7|guanine nucleotide binding protein (G protein), gamma 12 	ENSMUST00000114224.1|Gng12|ENSMUSG00000036402.7|guanine nucleotide binding protein (G protein), gamma 12
mm10_v2_chr2_-_25575224_25575224	0.0681926	Nkx2-9	ENSMUST00000039156.6|Phpt1|ENSMUSG00000036504.6|phosphohistidine phosphatase 1
mm10_v2_chr4_-_132884509_132884523	0.0676612	Nkx2-9	ENSMUST00000030698.4|Stx12|ENSMUSG00000028879.4|syntaxin 12
mm10_v2_chrX_-_7899220_7899271	0.0668045	Nkx2-9	ENSMUST00000033497.2|Pqbp1|ENSMUSG00000031157.4|polyglutamine binding protein 1
mm10_v2_chr7_-_126475082_126475130	0.0665041	Nkx2-9	ENSMUST00000032978.6|Sh2b1|ENSMUSG00000030733.9|SH2B adaptor protein 1
mm10_v2_chr10_+_63061582_63061618	0.065181	Nkx2-9	ENSMUST00000020266.8|Pbld1|ENSMUSG00000020072.8|phenazine biosynthesis-like protein domain containing 1 	ENSMUST00000178684.1|Pbld1|ENSMUSG00000020072.8|phenazine biosynthesis-like protein domain containing 1
mm10_v2_chr1_+_171329015_171329145	0.06514	Nkx2-9	ENSMUST00000111300.1|Dedd|ENSMUSG00000013973.6|death effector domain-containing
mm10_v2_chr10_+_127420867_127420916	0.0624886	Nkx2-9	ENSMUST00000064793.6|R3hdm2|ENSMUSG00000025404.9|R3H domain containing 2
mm10_v2_chrX_+_152001845_152001908	0.0564195	Nkx2-9	ENSMUST00000026289.3|Hsd17b10|ENSMUSG00000025260.4|hydroxysteroid (17-beta) dehydrogenase 10 	ENSMUST00000112617.3|Hsd17b10|ENSMUSG00000025260.4|hydroxysteroid (17-beta) dehydrogenase 10
mm10_v2_chrX_-_7899196_7899206	0.0535698	Nkx2-9	ENSMUST00000115654.1|Pqbp1|ENSMUSG00000031157.4|polyglutamine binding protein 1
mm10_v2_chr7_-_102018139_102018206	0.05267	Nkx2-9	ENSMUST00000094134.3|Il18bp|ENSMUSG00000070427.3|interleukin 18 binding protein
mm10_v2_chr3_-_153912966_153912990	0.0375607	Nkx2-9	ENSMUST00000089950.4|Rabggtb|ENSMUSG00000038975.8|RAB geranylgeranyl transferase, b subunit
mm10_v2_chr11_+_29692937_29692997	0.0368334	Nkx2-9	ENSMUST00000102843.3|Rtn4|ENSMUSG00000020458.10|reticulon 4 	ENSMUST00000102842.3|Rtn4|ENSMUSG00000020458.10|reticulon 4 	ENSMUST00000078830.4|Rtn4|ENSMUSG00000020458.10|reticulon 4 	ENSMUST00000170731.1|Rtn4|ENSMUSG00000020458.10|reticulon 4
mm10_v2_chr4_-_141664063_141664170	0.0349677	Nkx2-9	ENSMUST00000084203.4|Plekhm2|ENSMUSG00000028917.8|pleckstrin homology domain containing, family M (with RUN domain) member 2
mm10_v2_chr10_+_19934472_19934526	0.0349192	Nkx2-9	ENSMUST00000095806.3|Map3k5|ENSMUSG00000071369.4|mitogen-activated protein kinase kinase kinase 5 	ENSMUST00000120259.1|Map3k5|ENSMUSG00000071369.4|mitogen-activated protein kinase kinase kinase 5
mm10_v2_chr15_+_79690869_79690905	0.0265842	Nkx2-9	ENSMUST00000046463.8|Gtpbp1|ENSMUSG00000042535.8|GTP binding protein 1
mm10_v2_chr4_+_8690399_8690470	0.0243083	Nkx2-9	ENSMUST00000127476.1|Chd7|ENSMUSG00000041235.5|chromodomain helicase DNA binding protein 7
mm10_v2_chr16_-_35490873_35490891	0.0218424	Nkx2-9	ENSMUST00000023550.7|Pdia5|ENSMUSG00000022844.7|protein disulfide isomerase associated 5
mm10_v2_chr1_+_87264345_87264370	0.0217095	Nkx2-9	ENSMUST00000118687.1|Efhd1|ENSMUSG00000026255.9|EF hand domain containing 1 	ENSMUST00000027472.6|Efhd1|ENSMUSG00000026255.9|EF hand domain containing 1
mm10_v2_chr8_+_95320440_95320496	0.0205055	Nkx2-9	ENSMUST00000162294.1|Tepp|ENSMUSG00000090206.1|testis, prostate and placenta expressed
mm10_v2_chr10_+_82378593_82378593	0.0172343	Nkx2-9	ENSMUST00000165906.1|Gm4924|ENSMUSG00000073427.3|predicted gene 4924
mm10_v2_chr13_-_92131494_92131680	0.0137916	Nkx2-9	ENSMUST00000099326.3|Rasgrf2|ENSMUSG00000021708.10|RAS protein-specific guanine nucleotide-releasing factor 2 	ENSMUST00000146492.1|Rasgrf2|ENSMUSG00000021708.10|RAS protein-specific guanine nucleotide-releasing factor 2
mm10_v2_chr15_+_25414175_25414197	0.0137663	Nkx2-9	ENSMUST00000069992.5|Gm5468|ENSMUSG00000056089.5|predicted gene 5468
mm10_v2_chr10_+_112928501_112928501	0.0118049	Nkx2-9	ENSMUST00000180464.1|Gm26596|ENSMUSG00000097185.1|predicted gene, 26596
mm10_v2_chr5_-_24445254_24445287	0.00841847	Nkx2-9	ENSMUST00000030800.6|Fastk|ENSMUSG00000028959.8|Fas-activated serine/threonine kinase
mm10_v2_chr4_-_43010226_43010355	0.00541861	Nkx2-9	ENSMUST00000030165.4|Fancg|ENSMUSG00000028453.4|Fanconi anemia, complementation group G
mm10_v2_chr4_+_43401232_43401293	0.00534325	Nkx2-9	ENSMUST00000125399.1|Rusc2|ENSMUSG00000035969.9|RUN and SH3 domain containing 2
mm10_v2_chr16_+_70313949_70314016	0.00442202	Nkx2-9	ENSMUST00000163832.1|Gbe1|ENSMUSG00000022707.10|glucan (1,4-alpha-), branching enzyme 1
mm10_v2_chr1_-_74600564_74600622	0.00342453	Nkx2-9	ENSMUST00000127938.1|Rnf25|ENSMUSG00000026171.6|ring finger protein 25 	ENSMUST00000154874.1|Rnf25|ENSMUSG00000026171.6|ring finger protein 25
mm10_v2_chr17_-_25861456_25861510	0.00244269	Nkx2-9	ENSMUST00000079461.8|Wdr90|ENSMUSG00000073434.5|WD repeat domain 90 	ENSMUST00000176923.1|Wdr90|ENSMUSG00000073434.5|WD repeat domain 90
mm10_v2_chr15_-_79285502_79285537	0.00211604	Nkx2-9	ENSMUST00000165408.1|Baiap2l2|ENSMUSG00000018126.9|BAI1-associated protein 2-like 2
mm10_v2_chr6_-_87851011_87851060	0.000181335	Nkx2-9	ENSMUST00000113617.1|Cnbp|ENSMUSG00000030057.9|cellular nucleic acid binding protein
