mm10_v2_chr2_-_36105271_36105434	0.88253	Pax1_Pax9	ENSMUST00000112960.1|Lhx6|ENSMUSG00000026890.13|LIM homeobox protein 6 	ENSMUST00000112967.5|Lhx6|ENSMUSG00000026890.13|LIM homeobox protein 6 	ENSMUST00000112963.1|Lhx6|ENSMUSG00000026890.13|LIM homeobox protein 6
mm10_v2_chr12_-_90969768_90969790	0.874229	Pax1_Pax9	ENSMUST00000181184.1|4930544I03Rik|ENSMUSG00000097071.1|RIKEN cDNA 4930544I03 gene
mm10_v2_chr18_+_69344503_69344530	0.5287	Pax1_Pax9	ENSMUST00000114985.3|Tcf4|ENSMUSG00000053477.9|transcription factor 4
mm10_v2_chr5_+_112255813_112255874	0.498439	Pax1_Pax9	ENSMUST00000031286.6|Crybb1|ENSMUSG00000029343.11|crystallin, beta B1 	ENSMUST00000131673.1|Crybb1|ENSMUSG00000029343.11|crystallin, beta B1 	ENSMUST00000112375.1|Crybb1|ENSMUSG00000029343.11|crystallin, beta B1
mm10_v2_chr2_+_84734050_84734107	0.414259	Pax1_Pax9	ENSMUST00000090729.2|Ypel4|ENSMUSG00000034059.7|yippee-like 4 (Drosophila)
mm10_v2_chr9_-_97111117_97111159	0.316754	Pax1_Pax9	ENSMUST00000085206.4|Slc25a36|ENSMUSG00000032449.7|solute carrier family 25, member 36
mm10_v2_chr9_+_21337828_21337859	0.315157	Pax1_Pax9	ENSMUST00000034697.7|Slc44a2|ENSMUSG00000057193.7|solute carrier family 44, member 2
mm10_v2_chr13_-_62520451_62520544	0.22007	Pax1_Pax9	ENSMUST00000082203.6|Zfp934|ENSMUSG00000074865.4|zinc finger protein 934 	ENSMUST00000101547.4|Zfp934|ENSMUSG00000074865.4|zinc finger protein 934
mm10_v2_chrX_+_86191764_86191782	0.219446	Pax1_Pax9	ENSMUST00000026036.4|Nr0b1|ENSMUSG00000025056.4|nuclear receptor subfamily 0, group B, member 1
mm10_v2_chr19_-_7105729_7105729	0.214186	Pax1_Pax9	ENSMUST00000113383.2|Flrt1|ENSMUSG00000047787.7|fibronectin leucine rich transmembrane protein 1
mm10_v2_chr12_+_33957645_33957671	0.191902	Pax1_Pax9	ENSMUST00000049089.5|Twist1|ENSMUSG00000035799.5|twist basic helix-loop-helix transcription factor 1
mm10_v2_chr19_-_29047847_29047977	0.177024	Pax1_Pax9	ENSMUST00000025696.4|Ak3|ENSMUSG00000024782.7|adenylate kinase 3
mm10_v2_chr13_-_62777089_62777089	0.165126	Pax1_Pax9	ENSMUST00000167516.2|Gm5141|ENSMUSG00000091183.2|predicted gene 5141
mm10_v2_chr9_+_96196246_96196280	0.163116	Pax1_Pax9	ENSMUST00000165120.2|Tfdp2|ENSMUSG00000032411.9|transcription factor Dp 2 	ENSMUST00000034982.9|Tfdp2|ENSMUSG00000032411.9|transcription factor Dp 2
mm10_v2_chr8_+_94838321_94838429	0.159245	Pax1_Pax9	ENSMUST00000034234.8|Coq9|ENSMUSG00000031782.8|coenzyme Q9 homolog (yeast) 	ENSMUST00000159871.1|Coq9|ENSMUSG00000031782.8|coenzyme Q9 homolog (yeast)
mm10_v2_chr13_-_62607499_62607499	0.139306	Pax1_Pax9	ENSMUST00000091563.4|6720489N17Rik|ENSMUSG00000072066.3|RIKEN cDNA 6720489N17 gene
mm10_v2_chr5_-_31291026_31291143	0.125729	Pax1_Pax9	ENSMUST00000041565.7|Ift172|ENSMUSG00000038564.7|intraflagellar transport 172
mm10_v2_chr2_-_33468493_33468572	0.0956486	Pax1_Pax9	ENSMUST00000113156.1|Zbtb43|ENSMUSG00000026788.7|zinc finger and BTB domain containing 43 	ENSMUST00000028125.5|Zbtb43|ENSMUSG00000026788.7|zinc finger and BTB domain containing 43 	ENSMUST00000126442.1|Zbtb43|ENSMUSG00000026788.7|zinc finger and BTB domain containing 43
mm10_v2_chr3_-_117360876_117360876	0.0715618	Pax1_Pax9	ENSMUST00000061071.8|D3Bwg0562e|ENSMUSG00000044667.8|DNA segment, Chr 3, Brigham & Women's Genetics 0562 expressed
mm10_v2_chr17_-_24205514_24205562	0.0689545	Pax1_Pax9	ENSMUST00000097376.3|Tbc1d24|ENSMUSG00000036473.9|TBC1 domain family, member 24 	ENSMUST00000168410.2|Tbc1d24|ENSMUSG00000036473.9|TBC1 domain family, member 24 	ENSMUST00000167791.2|Tbc1d24|ENSMUSG00000036473.9|TBC1 domain family, member 24 	ENSMUST00000040474.7|Tbc1d24|ENSMUSG00000036473.9|TBC1 domain family, member 24
mm10_v2_chr4_-_110286581_110286617	0.055289	Pax1_Pax9	ENSMUST00000138972.1|Elavl4|ENSMUSG00000028546.11|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)
mm10_v2_chr10_+_77978524_77978673	0.0521604	Pax1_Pax9	ENSMUST00000105397.3|1810043G02Rik|ENSMUSG00000020284.10|RIKEN cDNA 1810043G02 gene 	ENSMUST00000105398.1|1810043G02Rik|ENSMUSG00000020284.10|RIKEN cDNA 1810043G02 gene
mm10_v2_chr7_-_24299310_24299368	0.0462397	Pax1_Pax9	ENSMUST00000145131.1|Zfp61|ENSMUSG00000050605.11|zinc finger protein 61
mm10_v2_chr6_-_88518760_88518905	0.0438035	Pax1_Pax9	ENSMUST00000032168.5|Sec61a1|ENSMUSG00000030082.8|Sec61 alpha 1 subunit (S. cerevisiae)
mm10_v2_chr8_+_31150307_31150346	0.0390967	Pax1_Pax9	ENSMUST00000098842.2|Tti2|ENSMUSG00000031577.9|TELO2 interacting protein 2
mm10_v2_chr11_+_83753689_83753722	0.0331051	Pax1_Pax9	ENSMUST00000001002.7|Heatr6|ENSMUSG00000000976.7|HEAT repeat containing 6
mm10_v2_chr7_+_48789003_48789060	0.0104784	Pax1_Pax9	ENSMUST00000118927.1|Zdhhc13|ENSMUSG00000030471.11|zinc finger, DHHC domain containing 13 	ENSMUST00000125280.1|Zdhhc13|ENSMUSG00000030471.11|zinc finger, DHHC domain containing 13
mm10_v2_chr19_+_8840519_8840549	0.00352164	Pax1_Pax9	ENSMUST00000086058.6|Bscl2|ENSMUSG00000071657.6|Bernardinelli-Seip congenital lipodystrophy 2 homolog (human)
mm10_v2_chr17_-_27909206_27909264	0.00320291	Pax1_Pax9	ENSMUST00000114848.1|Taf11|ENSMUSG00000024218.6|TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor
mm10_v2_chr4_+_11558914_11558979	0.00124283	Pax1_Pax9	ENSMUST00000178703.1|Rad54b|ENSMUSG00000078773.5|RAD54 homolog B (S. cerevisiae) 	ENSMUST00000095145.5|Rad54b|ENSMUSG00000078773.5|RAD54 homolog B (S. cerevisiae) 	ENSMUST00000108306.2|Rad54b|ENSMUSG00000078773.5|RAD54 homolog B (S. cerevisiae) 	ENSMUST00000070755.6|Rad54b|ENSMUSG00000078773.5|RAD54 homolog B (S. cerevisiae)
