mm10_v2_chr6_+_137410721_137410772	4.10686	Pitx2_Otx2	ENSMUST00000167002.1|Ptpro|ENSMUSG00000030223.8|protein tyrosine phosphatase, receptor type, O
mm10_v2_chr7_-_34812677_34812693	3.26086	Pitx2_Otx2	ENSMUST00000078686.6|Chst8|ENSMUSG00000060402.6|carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 8
mm10_v2_chr17_-_35188427_35188446	3.1554	Pitx2_Otx2	ENSMUST00000097336.4|Lst1|ENSMUSG00000073412.6|leukocyte specific transcript 1
mm10_v2_chrX_-_61185558_61185558	2.55086	Pitx2_Otx2	ENSMUST00000166381.1|Cdr1|ENSMUSG00000090546.1|cerebellar degeneration related antigen 1
mm10_v2_chr7_-_75782080_75782126	2.50559	Pitx2_Otx2	ENSMUST00000181224.1|AU020206|ENSMUSG00000097415.1|expressed sequence AU020206
mm10_v2_chr6_-_88898664_88898780	2.50445	Pitx2_Otx2	ENSMUST00000058011.6|Mcm2|ENSMUSG00000002870.7|minichromosome maintenance deficient 2 mitotin (S. cerevisiae)
mm10_v2_chr11_-_106998483_106998491	2.37206	Pitx2_Otx2	ENSMUST00000124541.1|Kpna2|ENSMUSG00000018362.8|karyopherin (importin) alpha 2
mm10_v2_chr15_+_99006056_99006056	2.3325	Pitx2_Otx2	ENSMUST00000079818.3|Gm8973|ENSMUSG00000064081.3|predicted gene 8973
mm10_v2_chr11_+_101448403_101448487	2.24945	Pitx2_Otx2	ENSMUST00000010502.6|Ifi35|ENSMUSG00000010358.7|interferon-induced protein 35
mm10_v2_chr14_-_70630149_70630185	2.24569	Pitx2_Otx2	ENSMUST00000022694.9|Dmtn|ENSMUSG00000022099.10|dematin actin binding protein
mm10_v2_chr6_+_34354119_34354151	2.24322	Pitx2_Otx2	ENSMUST00000038406.6|Akr1b8|ENSMUSG00000029762.6|aldo-keto reductase family 1, member B8
mm10_v2_chr17_+_6430112_6430204	2.16289	Pitx2_Otx2	ENSMUST00000179569.1|Dynlt1b|ENSMUSG00000096255.1|dynein light chain Tctex-type 1B
mm10_v2_chr2_-_118256929_118256973	2.14952	Pitx2_Otx2	ENSMUST00000028820.6|Fsip1|ENSMUSG00000027344.7|fibrous sheath-interacting protein 1 	ENSMUST00000028821.3|Fsip1|ENSMUSG00000027344.7|fibrous sheath-interacting protein 1
mm10_v2_chr13_-_66852017_66852017	2.1485	Pitx2_Otx2	ENSMUST00000059329.6|Gm17449|ENSMUSG00000094740.1|predicted gene, 17449
mm10_v2_chr19_-_41896132_41896155	2.13098	Pitx2_Otx2	ENSMUST00000038677.3|Rrp12|ENSMUSG00000035049.3|ribosomal RNA processing 12 homolog (S. cerevisiae)
mm10_v2_chr8_-_71511762_71511778	2.0819	Pitx2_Otx2	ENSMUST00000048452.4|Plvap|ENSMUSG00000034845.5|plasmalemma vesicle associated protein
mm10_v2_chr7_+_45163915_45163926	2.02183	Pitx2_Otx2	ENSMUST00000085374.5|Slc17a7|ENSMUSG00000070570.4|solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 7
mm10_v2_chr4_+_155704789_155704834	1.95244	Pitx2_Otx2	ENSMUST00000030905.2|Ssu72|ENSMUSG00000029038.3|Ssu72 RNA polymerase II CTD phosphatase homolog (yeast)
mm10_v2_chr5_+_24985840_24985862	1.90249	Pitx2_Otx2	ENSMUST00000075081.6|1500035N22Rik|ENSMUSG00000059631.6|RIKEN cDNA 1500035N22 gene
mm10_v2_chr2_+_164562579_164562721	1.82651	Pitx2_Otx2	ENSMUST00000017867.3|Wfdc2|ENSMUSG00000017723.5|WAP four-disulfide core domain 2 	ENSMUST00000109344.2|Wfdc2|ENSMUSG00000017723.5|WAP four-disulfide core domain 2 	ENSMUST00000109345.2|Wfdc2|ENSMUSG00000017723.5|WAP four-disulfide core domain 2
mm10_v2_chr18_+_34736359_34736359	1.82475	Pitx2_Otx2	ENSMUST00000105038.2|Gm3550|ENSMUSG00000078240.2|predicted gene 3550
mm10_v2_chr7_+_102225812_102225823	1.75044	Pitx2_Otx2	ENSMUST00000142873.1|Pgap2|ENSMUSG00000030990.11|post-GPI attachment to proteins 2
mm10_v2_chr3_+_85915722_85915722	1.72193	Pitx2_Otx2	ENSMUST00000054148.7|Gm9790|ENSMUSG00000044330.7|predicted gene 9790
mm10_v2_chr4_+_80910646_80910685	1.71763	Pitx2_Otx2	ENSMUST00000055922.3|Lurap1l|ENSMUSG00000048706.3|leucine rich adaptor protein 1-like
mm10_v2_chr18_-_60501983_60501983	1.69187	Pitx2_Otx2	ENSMUST00000042710.6|Smim3|ENSMUSG00000038059.6|small integral membrane protein 3
mm10_v2_chr6_+_56017489_56017517	1.63929	Pitx2_Otx2	ENSMUST00000052827.4|Ppp1r17|ENSMUSG00000002930.5|protein phosphatase 1, regulatory subunit 17
mm10_v2_chr7_-_143460989_143461050	1.63541	Pitx2_Otx2	ENSMUST00000167912.1|Cdkn1c|ENSMUSG00000037664.6|cyclin-dependent kinase inhibitor 1C (P57) 	ENSMUST00000037287.6|Cdkn1c|ENSMUSG00000037664.6|cyclin-dependent kinase inhibitor 1C (P57)
mm10_v2_chr18_+_34751803_34751912	1.62139	Pitx2_Otx2	ENSMUST00000181453.1|2010110K18Rik|ENSMUSG00000097755.1|RIKEN cDNA 2010110K18 gene 	ENSMUST00000181641.1|2010110K18Rik|ENSMUSG00000097755.1|RIKEN cDNA 2010110K18 gene
mm10_v2_chr1_+_135232045_135232110	1.59436	Pitx2_Otx2	ENSMUST00000110798.3|Gm4204|ENSMUSG00000079139.3|predicted gene 4204
mm10_v2_chr7_-_118116128_118116167	1.58031	Pitx2_Otx2	ENSMUST00000128482.1|Rps15a|ENSMUSG00000008683.10|ribosomal protein S15A 	ENSMUST00000131840.1|Rps15a|ENSMUSG00000008683.10|ribosomal protein S15A
mm10_v2_chr4_-_142239356_142239418	1.5664	Pitx2_Otx2	ENSMUST00000036476.3|Kazn|ENSMUSG00000040606.7|kazrin, periplakin interacting protein
mm10_v2_chr7_-_19921139_19921160	1.52944	Pitx2_Otx2	ENSMUST00000043517.7|Pvr|ENSMUSG00000040511.7|poliovirus receptor
mm10_v2_chr6_-_23248264_23248390	1.48908	Pitx2_Otx2	ENSMUST00000031709.5|Fezf1|ENSMUSG00000029697.5|Fez family zinc finger 1
mm10_v2_chrM_+_8600_8616	1.48576	Pitx2_Otx2	ENSMUST00000082409.1|mt-Co3|ENSMUSG00000064358.1|mitochondrially encoded cytochrome c oxidase III
mm10_v2_chr7_-_140082489_140082556	1.47969	Pitx2_Otx2	ENSMUST00000026541.7|Caly|ENSMUSG00000025468.8|calcyon neuron-specific vesicular protein
mm10_v2_chr11_-_33843526_33843629	1.45991	Pitx2_Otx2	ENSMUST00000065970.5|Kcnip1|ENSMUSG00000053519.9|Kv channel-interacting protein 1 	ENSMUST00000109340.2|Kcnip1|ENSMUSG00000053519.9|Kv channel-interacting protein 1
mm10_v2_chr4_+_154011731_154011818	1.38458	Pitx2_Otx2	ENSMUST00000169622.1|Lrrc47|ENSMUSG00000029028.8|leucine rich repeat containing 47 	ENSMUST00000030894.8|Lrrc47|ENSMUSG00000029028.8|leucine rich repeat containing 47
mm10_v2_chr4_+_141368116_141368220	1.37699	Pitx2_Otx2	ENSMUST00000006380.4|Fam131c|ENSMUSG00000006218.4|family with sequence similarity 131, member C
mm10_v2_chr1_-_175979114_175979114	1.36528	Pitx2_Otx2	ENSMUST00000104983.1|B020018G12Rik|ENSMUSG00000078184.1|RIKEN cDNA B020018G12 gene
mm10_v2_chr17_+_34135182_34135182	1.35715	Pitx2_Otx2	ENSMUST00000042121.9|H2-DMa|ENSMUSG00000037649.9|histocompatibility 2, class II, locus DMa
mm10_v2_chr15_+_6422240_6422327	1.35648	Pitx2_Otx2	ENSMUST00000163082.1|Dab2|ENSMUSG00000022150.10|disabled 2, mitogen-responsive phosphoprotein
mm10_v2_chr11_+_101442298_101442439	1.35545	Pitx2_Otx2	ENSMUST00000077856.6|Rpl27|ENSMUSG00000063316.7|ribosomal protein L27
mm10_v2_chr4_-_117182623_117182639	1.34929	Pitx2_Otx2	ENSMUST00000065896.2|Kif2c|ENSMUSG00000028678.7|kinesin family member 2C
mm10_v2_chr2_+_155236602_155236617	1.34569	Pitx2_Otx2	ENSMUST00000150602.1|Dynlrb1|ENSMUSG00000047459.8|dynein light chain roadblock-type 1
mm10_v2_chr8_+_85026833_85026899	1.34549	Pitx2_Otx2	ENSMUST00000047281.8|2310036O22Rik|ENSMUSG00000041203.8|RIKEN cDNA 2310036O22 gene
mm10_v2_chr9_-_70421533_70421592	1.3302	Pitx2_Otx2	ENSMUST00000034742.6|Ccnb2|ENSMUSG00000032218.6|cyclin B2
mm10_v2_chr9_+_54950782_54950797	1.3125	Pitx2_Otx2	ENSMUST00000034848.7|Psma4|ENSMUSG00000032301.7|proteasome (prosome, macropain) subunit, alpha type 4
mm10_v2_chr11_-_33843405_33843461	1.30145	Pitx2_Otx2	ENSMUST00000101368.2|Kcnip1|ENSMUSG00000053519.9|Kv channel-interacting protein 1
mm10_v2_chr14_+_74735641_74735663	1.29558	Pitx2_Otx2	ENSMUST00000177283.1|Esd|ENSMUSG00000021996.10|esterase D/formylglutathione hydrolase
mm10_v2_chr5_+_74195281_74195294	1.29542	Pitx2_Otx2	ENSMUST00000051937.7|Rasl11b|ENSMUSG00000049907.7|RAS-like, family 11, member B
mm10_v2_chr10_-_80406811_80406830	1.29533	Pitx2_Otx2	ENSMUST00000020372.5|Uqcr11|ENSMUSG00000020163.6|ubiquinol-cytochrome c reductase, complex III subunit XI
mm10_v2_chr9_-_114982739_114982742	1.28266	Pitx2_Otx2	ENSMUST00000053150.5|Gm9846|ENSMUSG00000050621.5|predicted gene 9846
mm10_v2_chr1_+_34849950_34850010	1.26052	Pitx2_Otx2	ENSMUST00000027297.4|Plekhb2|ENSMUSG00000026123.5|pleckstrin homology domain containing, family B (evectins) member 2
mm10_v2_chr8_-_116993459_116993538	1.24935	Pitx2_Otx2	ENSMUST00000040484.5|Gcsh|ENSMUSG00000034424.5|glycine cleavage system protein H (aminomethyl carrier)
mm10_v2_chr11_-_77725281_77725294	1.24367	Pitx2_Otx2	ENSMUST00000078623.4|Cryba1|ENSMUSG00000000724.10|crystallin, beta A1
mm10_v2_chr16_+_31422268_31422280	1.23841	Pitx2_Otx2	ENSMUST00000089759.2|Bdh1|ENSMUSG00000046598.8|3-hydroxybutyrate dehydrogenase, type 1
mm10_v2_chr2_+_157737401_157737490	1.23106	Pitx2_Otx2	ENSMUST00000029178.6|Ctnnbl1|ENSMUSG00000027649.9|catenin, beta like 1
mm10_v2_chr12_+_87026286_87026297	1.20682	Pitx2_Otx2	ENSMUST00000146292.1|Tmem63c|ENSMUSG00000034145.8|transmembrane protein 63c
mm10_v2_chr2_+_144594054_144594083	1.20327	Pitx2_Otx2	ENSMUST00000136628.1|Gm561|ENSMUSG00000074754.4|predicted gene 561
mm10_v2_chr17_-_35121990_35122053	1.19535	Pitx2_Otx2	ENSMUST00000173915.1|Csnk2b|ENSMUSG00000024387.7|casein kinase 2, beta polypeptide 	ENSMUST00000172765.2|Csnk2b|ENSMUSG00000024387.7|casein kinase 2, beta polypeptide
mm10_v2_chr15_-_102667749_102667749	1.18884	Pitx2_Otx2	ENSMUST00000075630.3|Atp5g2|ENSMUSG00000062683.5|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C2 (subunit 9)
mm10_v2_chr11_+_115403734_115403777	1.18781	Pitx2_Otx2	ENSMUST00000153983.1|Ict1|ENSMUSG00000018858.9|immature colon carcinoma transcript 1 	ENSMUST00000106539.3|Ict1|ENSMUSG00000018858.9|immature colon carcinoma transcript 1 	ENSMUST00000103036.4|Ict1|ENSMUSG00000018858.9|immature colon carcinoma transcript 1
mm10_v2_chr13_-_66851513_66851513	1.18213	Pitx2_Otx2	ENSMUST00000169322.1|Gm17404|ENSMUSG00000095206.1|predicted gene, 17404
mm10_v2_chr2_+_155236529_155236599	1.1775	Pitx2_Otx2	ENSMUST00000109682.2|Dynlrb1|ENSMUSG00000047459.8|dynein light chain roadblock-type 1
mm10_v2_chr9_+_54950808_54950820	1.1746	Pitx2_Otx2	ENSMUST00000172407.1|Psma4|ENSMUSG00000032301.7|proteasome (prosome, macropain) subunit, alpha type 4
mm10_v2_chr6_-_131293187_131293248	1.1738	Pitx2_Otx2	ENSMUST00000032307.5|Magohb|ENSMUSG00000030188.6|mago-nashi homolog B (Drosophila)
mm10_v2_chr11_-_106999482_106999541	1.15324	Pitx2_Otx2	ENSMUST00000018506.6|Kpna2|ENSMUSG00000018362.8|karyopherin (importin) alpha 2
mm10_v2_chr7_+_19851994_19852022	1.14393	Pitx2_Otx2	ENSMUST00000172815.1|Gm19345|ENSMUSG00000092216.1|predicted gene, 19345
mm10_v2_chr5_-_136986829_136986901	1.13201	Pitx2_Otx2	ENSMUST00000034953.7|Znhit1|ENSMUSG00000059518.8|zinc finger, HIT domain containing 1 	ENSMUST00000085941.5|Znhit1|ENSMUSG00000059518.8|zinc finger, HIT domain containing 1
mm10_v2_chr9_-_78489141_78489166	1.12825	Pitx2_Otx2	ENSMUST00000154207.1|Eef1a1|ENSMUSG00000037742.8|eukaryotic translation elongation factor 1 alpha 1
mm10_v2_chr9_+_121642716_121642757	1.12439	Pitx2_Otx2	ENSMUST00000035115.4|Vipr1|ENSMUSG00000032528.4|vasoactive intestinal peptide receptor 1
mm10_v2_chr8_+_70131327_70131392	1.12418	Pitx2_Otx2	ENSMUST00000095273.5|Nr2c2ap|ENSMUSG00000071078.5|nuclear receptor 2C2-associated protein
mm10_v2_chr10_-_128180265_128180307	1.11401	Pitx2_Otx2	ENSMUST00000099139.1|Rbms2|ENSMUSG00000040043.9|RNA binding motif, single stranded interacting protein 2
mm10_v2_chr10_+_82954344_82954344	1.07319	Pitx2_Otx2	ENSMUST00000095396.3|Gm4799|ENSMUSG00000071151.3|predicted gene 4799
mm10_v2_chr17_-_70924958_70925003	1.06764	Pitx2_Otx2	ENSMUST00000180468.1|Gm26510|ENSMUSG00000097154.1|predicted gene, 26510
mm10_v2_chr19_+_6061176_6061235	1.06031	Pitx2_Otx2	ENSMUST00000162726.3|Znhit2|ENSMUSG00000075227.5|zinc finger, HIT domain containing 2
mm10_v2_chr15_-_83122756_83122801	1.05244	Pitx2_Otx2	ENSMUST00000018184.3|Rrp7a|ENSMUSG00000018040.3|ribosomal RNA processing 7 homolog A (S. cerevisiae)
mm10_v2_chr3_+_95111013_95111087	1.05029	Pitx2_Otx2	ENSMUST00000009102.8|Vps72|ENSMUSG00000008958.8|vacuolar protein sorting 72 (yeast)
mm10_v2_chr15_-_36308956_36308956	1.05017	Pitx2_Otx2	ENSMUST00000090170.4|Rpl7a-ps3|ENSMUSG00000068579.4|ribosomal protein L7A, pseudogene 3
mm10_v2_chr4_-_141598206_141598229	1.04501	Pitx2_Otx2	ENSMUST00000131317.1|Fblim1|ENSMUSG00000006219.6|filamin binding LIM protein 1 	ENSMUST00000006381.4|Fblim1|ENSMUSG00000006219.6|filamin binding LIM protein 1 	ENSMUST00000129602.1|Fblim1|ENSMUSG00000006219.6|filamin binding LIM protein 1
mm10_v2_chr6_-_124814288_124814296	1.03937	Pitx2_Otx2	ENSMUST00000172132.2|Tpi1|ENSMUSG00000023456.8|triosephosphate isomerase 1
mm10_v2_chr12_+_109734969_109734985	1.03406	Pitx2_Otx2	ENSMUST00000182268.1|Mirg|ENSMUSG00000097391.2|miRNA containing gene 	ENSMUST00000181543.2|Mirg|ENSMUSG00000097391.2|miRNA containing gene 	ENSMUST00000183116.1|Mirg|ENSMUSG00000097391.2|miRNA containing gene
mm10_v2_chr5_+_137778849_137778935	1.01729	Pitx2_Otx2	ENSMUST00000126126.1|Ppp1r35|ENSMUSG00000029725.4|protein phosphatase 1, regulatory subunit 35 	ENSMUST00000031739.4|Ppp1r35|ENSMUSG00000029725.4|protein phosphatase 1, regulatory subunit 35
mm10_v2_chr8_+_33653238_33653238	1.01685	Pitx2_Otx2	ENSMUST00000033992.8|Gsr|ENSMUSG00000031584.10|glutathione reductase
mm10_v2_chr11_+_100574904_100574982	1.00556	Pitx2_Otx2	ENSMUST00000103120.4|Cnp|ENSMUSG00000006782.10|2',3'-cyclic nucleotide 3' phosphodiesterase
mm10_v2_chr12_-_28635914_28635953	0.99124	Pitx2_Otx2	ENSMUST00000074267.3|Rps7|ENSMUSG00000061477.3|ribosomal protein S7
mm10_v2_chr5_+_134582690_134582727	0.982636	Pitx2_Otx2	ENSMUST00000023867.6|Rfc2|ENSMUSG00000023104.6|replication factor C (activator 1) 2
mm10_v2_chr11_-_106999369_106999473	0.964901	Pitx2_Otx2	ENSMUST00000106768.1|Kpna2|ENSMUSG00000018362.8|karyopherin (importin) alpha 2 	ENSMUST00000144834.1|Kpna2|ENSMUSG00000018362.8|karyopherin (importin) alpha 2
mm10_v2_chr8_+_58912257_58912257	0.956452	Pitx2_Otx2	ENSMUST00000160055.1|BC030500|ENSMUSG00000049946.7|cDNA sequence BC030500
mm10_v2_chr11_-_84069179_84069261	0.951402	Pitx2_Otx2	ENSMUST00000138208.1|Dusp14|ENSMUSG00000018648.9|dual specificity phosphatase 14
mm10_v2_chr7_+_127983079_127983079	0.949334	Pitx2_Otx2	ENSMUST00000079045.2|B230325K18Rik|ENSMUSG00000063254.2|RIKEN cDNA B230325K18 gene
mm10_v2_chr11_-_93965957_93966043	0.948839	Pitx2_Otx2	ENSMUST00000021220.3|Nme1|ENSMUSG00000037601.5|NME/NM23 nucleoside diphosphate kinase 1
mm10_v2_chr17_+_6601671_6601671	0.947864	Pitx2_Otx2	ENSMUST00000092966.4|Dynlt1c|ENSMUSG00000000579.8|dynein light chain Tctex-type 1C
mm10_v2_chr7_-_25297967_25298005	0.936195	Pitx2_Otx2	ENSMUST00000005583.5|Pafah1b3|ENSMUSG00000005447.6|platelet-activating factor acetylhydrolase, isoform 1b, subunit 3
mm10_v2_chr11_-_100135928_100135954	0.934759	Pitx2_Otx2	ENSMUST00000107411.2|Krt15|ENSMUSG00000054146.8|keratin 15
mm10_v2_chr11_+_100622870_100622881	0.933258	Pitx2_Otx2	ENSMUST00000017981.3|Nkiras2|ENSMUSG00000017837.6|NFKB inhibitor interacting Ras-like protein 2
mm10_v2_chr17_-_6655939_6655939	0.931609	Pitx2_Otx2	ENSMUST00000179554.1|Dynlt1f|ENSMUSG00000095677.1|dynein light chain Tctex-type 1F
mm10_v2_chr1_+_93685574_93685694	0.931241	Pitx2_Otx2	ENSMUST00000027499.6|Bok|ENSMUSG00000026278.8|BCL2-related ovarian killer protein
mm10_v2_chr19_+_12846773_12846781	0.930641	Pitx2_Otx2	ENSMUST00000164001.1|Gm5244|ENSMUSG00000091014.1|predicted pseudogene 5244
mm10_v2_chr3_+_134828993_134829015	0.926875	Pitx2_Otx2	ENSMUST00000029822.4|Tacr3|ENSMUSG00000028172.4|tachykinin receptor 3
mm10_v2_chr8_+_70673198_70673267	0.923801	Pitx2_Otx2	ENSMUST00000034311.8|Lsm4|ENSMUSG00000031848.8|LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)
mm10_v2_chr8_+_70152754_70152781	0.923426	Pitx2_Otx2	ENSMUST00000072500.6|2310045N01Rik|ENSMUSG00000002345.11|RIKEN cDNA 2310045N01 gene 	ENSMUST00000164040.1|2310045N01Rik|ENSMUSG00000002345.11|RIKEN cDNA 2310045N01 gene 	ENSMUST00000110146.2|Mef2b|ENSMUSG00000079033.3|myocyte enhancer factor 2B 	ENSMUST00000110143.1|Mef2b|ENSMUSG00000079033.3|myocyte enhancer factor 2B 	ENSMUST00000110141.2|Mef2b|ENSMUSG00000079033.3|myocyte enhancer factor 2B 	ENSMUST00000110140.1|Mef2b|ENSMUSG00000079033.3|myocyte enhancer factor 2B
mm10_v2_chr2_-_30801698_30801742	0.917124	Pitx2_Otx2	ENSMUST00000050003.8|1700001O22Rik|ENSMUSG00000044320.8|RIKEN cDNA 1700001O22 gene
mm10_v2_chr7_-_122101735_122101886	0.914126	Pitx2_Otx2	ENSMUST00000139456.1|Ndufab1|ENSMUSG00000030869.5|NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1 	ENSMUST00000106471.2|Ndufab1|ENSMUSG00000030869.5|NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1 	ENSMUST00000123296.1|Ndufab1|ENSMUSG00000030869.5|NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1 	ENSMUST00000033157.3|Ndufab1|ENSMUSG00000030869.5|NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1
mm10_v2_chr8_-_106573461_106573462	0.908601	Pitx2_Otx2	ENSMUST00000073722.5|Gm10073|ENSMUSG00000060019.5|predicted pseudogene 10073
mm10_v2_chr5_-_135251209_135251242	0.908505	Pitx2_Otx2	ENSMUST00000062572.2|Fzd9|ENSMUSG00000049551.2|frizzled homolog 9 (Drosophila)
mm10_v2_chr14_-_25927672_25927672	0.908255	Pitx2_Otx2	ENSMUST00000185006.1|Tmem254a|ENSMUSG00000072676.5|transmembrane protein 254a
mm10_v2_chr3_+_90072641_90072657	0.907435	Pitx2_Otx2	ENSMUST00000121503.1|Tpm3|ENSMUSG00000027940.12|tropomyosin 3, gamma 	ENSMUST00000119570.1|Tpm3|ENSMUSG00000027940.12|tropomyosin 3, gamma 	ENSMUST00000062193.9|Tpm3|ENSMUSG00000027940.12|tropomyosin 3, gamma
mm10_v2_chr8_-_105758570_105758664	0.906639	Pitx2_Otx2	ENSMUST00000155038.2|Gfod2|ENSMUSG00000013150.9|glucose-fructose oxidoreductase domain containing 2 	ENSMUST00000013294.9|Gfod2|ENSMUSG00000013150.9|glucose-fructose oxidoreductase domain containing 2
mm10_v2_chr4_-_141606011_141606058	0.90601	Pitx2_Otx2	ENSMUST00000123150.1|Fblim1|ENSMUSG00000006219.6|filamin binding LIM protein 1 	ENSMUST00000133874.1|Fblim1|ENSMUSG00000006219.6|filamin binding LIM protein 1 	ENSMUST00000136831.1|Fblim1|ENSMUSG00000006219.6|filamin binding LIM protein 1 	ENSMUST00000130181.1|Fblim1|ENSMUSG00000006219.6|filamin binding LIM protein 1 	ENSMUST00000105785.2|Fblim1|ENSMUSG00000006219.6|filamin binding LIM protein 1
mm10_v2_chr2_+_163122605_163122620	0.903486	Pitx2_Otx2	ENSMUST00000144092.1|Gm11454|ENSMUSG00000086152.1|predicted gene 11454
mm10_v2_chr7_-_118116171_118116198	0.896394	Pitx2_Otx2	ENSMUST00000131374.1|Rps15a|ENSMUSG00000008683.10|ribosomal protein S15A
mm10_v2_chr12_-_69159109_69159186	0.895592	Pitx2_Otx2	ENSMUST00000037023.8|Rps29|ENSMUSG00000034892.8|ribosomal protein S29
mm10_v2_chr2_+_174415804_174415871	0.895007	Pitx2_Otx2	ENSMUST00000109075.1|Nelfcd|ENSMUSG00000016253.6|negative elongation factor complex member C/D, Th1l 	ENSMUST00000016397.6|Nelfcd|ENSMUSG00000016253.6|negative elongation factor complex member C/D, Th1l
mm10_v2_chr5_+_106609098_106609098	0.891843	Pitx2_Otx2	ENSMUST00000167618.1|Gm17304|ENSMUSG00000091096.1|predicted gene, 17304
mm10_v2_chr3_-_36571952_36572150	0.889208	Pitx2_Otx2	ENSMUST00000029270.3|Ccna2|ENSMUSG00000027715.3|cyclin A2
mm10_v2_chr10_+_94514825_94514922	0.885332	Pitx2_Otx2	ENSMUST00000065060.5|Tmcc3|ENSMUSG00000020023.11|transmembrane and coiled coil domains 3
mm10_v2_chr18_-_20682963_20683006	0.877879	Pitx2_Otx2	ENSMUST00000165229.2|Gm10269|ENSMUSG00000091449.2|predicted gene 10269
mm10_v2_chr11_+_114668524_114668626	0.871595	Pitx2_Otx2	ENSMUST00000106602.3|Rpl38|ENSMUSG00000057322.6|ribosomal protein L38 	ENSMUST00000077915.3|Rpl38|ENSMUSG00000057322.6|ribosomal protein L38 	ENSMUST00000106599.1|Rpl38|ENSMUSG00000057322.6|ribosomal protein L38 	ENSMUST00000082092.4|Rpl38|ENSMUSG00000057322.6|ribosomal protein L38
mm10_v2_chr3_+_38886940_38886940	0.869427	Pitx2_Otx2	ENSMUST00000061260.7|Fat4|ENSMUSG00000046743.6|FAT tumor suppressor homolog 4 (Drosophila)
mm10_v2_chr6_+_55037988_55038091	0.866961	Pitx2_Otx2	ENSMUST00000003572.8|Gars|ENSMUSG00000029777.9|glycyl-tRNA synthetase
mm10_v2_chr6_-_85933379_85933379	0.86637	Pitx2_Otx2	ENSMUST00000162660.1|Nat8b|ENSMUSG00000089634.1|N-acetyltransferase 8B
mm10_v2_chr5_-_24581879_24581879	0.860512	Pitx2_Otx2	ENSMUST00000088299.4|Gm10221|ENSMUSG00000067719.4|predicted gene 10221
mm10_v2_chr10_+_13501001_13501043	0.857543	Pitx2_Otx2	ENSMUST00000060212.6|Fuca2|ENSMUSG00000019810.9|fucosidase, alpha-L- 2, plasma 	ENSMUST00000121465.2|Fuca2|ENSMUSG00000019810.9|fucosidase, alpha-L- 2, plasma
mm10_v2_chr9_-_96478660_96478675	0.85501	Pitx2_Otx2	ENSMUST00000057500.4|Rnf7|ENSMUSG00000051234.5|ring finger protein 7
mm10_v2_chr2_-_93957040_93957054	0.84778	Pitx2_Otx2	ENSMUST00000148314.2|Gm13889|ENSMUSG00000087006.2|predicted gene 13889
mm10_v2_chr1_+_92906959_92907036	0.846604	Pitx2_Otx2	ENSMUST00000060913.6|Dusp28|ENSMUSG00000047067.6|dual specificity phosphatase 28
mm10_v2_chr7_-_126792469_126792478	0.835784	Pitx2_Otx2	ENSMUST00000032936.6|Ppp4c|ENSMUSG00000030697.6|protein phosphatase 4, catalytic subunit
mm10_v2_chr4_+_89137122_89137122	0.834469	Pitx2_Otx2	ENSMUST00000058030.7|Mtap|ENSMUSG00000062937.5|methylthioadenosine phosphorylase
mm10_v2_chr9_+_57521232_57521314	0.832936	Pitx2_Otx2	ENSMUST00000000090.6|Cox5a|ENSMUSG00000000088.6|cytochrome c oxidase subunit Va
mm10_v2_chr19_-_61297069_61297069	0.829723	Pitx2_Otx2	ENSMUST00000179346.1|Gm21060|ENSMUSG00000095993.1|predicted gene, 21060
mm10_v2_chr4_-_123718198_123718209	0.828627	Pitx2_Otx2	ENSMUST00000030401.7|Ndufs5|ENSMUSG00000028648.7|NADH dehydrogenase (ubiquinone) Fe-S protein 5
mm10_v2_chr10_-_75773350_75773434	0.826044	Pitx2_Otx2	ENSMUST00000001716.7|Ddt|ENSMUSG00000001666.8|D-dopachrome tautomerase
mm10_v2_chr13_-_38658991_38659038	0.823989	Pitx2_Otx2	ENSMUST00000001757.7|Eef1e1|ENSMUSG00000001707.7|eukaryotic translation elongation factor 1 epsilon 1
mm10_v2_chr9_+_109051090_109051104	0.821799	Pitx2_Otx2	ENSMUST00000059097.8|Shisa5|ENSMUSG00000025647.10|shisa homolog 5 (Xenopus laevis)
mm10_v2_chr8_-_107439585_107439593	0.817194	Pitx2_Otx2	ENSMUST00000077208.4|Rps26-ps1|ENSMUSG00000059775.4|ribosomal protein S26, pseudogene 1
mm10_v2_chr5_+_107900502_107900577	0.812877	Pitx2_Otx2	ENSMUST00000082223.6|Rpl5|ENSMUSG00000058558.6|ribosomal protein L5
mm10_v2_chr15_+_79670856_79670888	0.80349	Pitx2_Otx2	ENSMUST00000023062.3|Tomm22|ENSMUSG00000022427.3|translocase of outer mitochondrial membrane 22 homolog (yeast)
mm10_v2_chr1_-_10038106_10038169	0.802883	Pitx2_Otx2	ENSMUST00000027050.3|Cops5|ENSMUSG00000025917.3|COP9 (constitutive photomorphogenic) homolog, subunit 5 (Arabidopsis thaliana)
mm10_v2_chr3_-_96197580_96197634	0.796825	Pitx2_Otx2	ENSMUST00000016087.3|Bola1|ENSMUSG00000015943.5|bolA-like 1 (E. coli)
mm10_v2_chr5_+_145083830_145083887	0.791374	Pitx2_Otx2	ENSMUST00000031625.8|Arpc1a|ENSMUSG00000029621.8|actin related protein 2/3 complex, subunit 1A
mm10_v2_chr12_-_111966954_111967017	0.787005	Pitx2_Otx2	ENSMUST00000021719.5|2010107E04Rik|ENSMUSG00000021290.5|RIKEN cDNA 2010107E04 gene
mm10_v2_chr15_+_76701455_76701542	0.786741	Pitx2_Otx2	ENSMUST00000019224.7|Mfsd3|ENSMUSG00000019080.7|major facilitator superfamily domain containing 3
mm10_v2_chr11_+_96034885_96034965	0.786355	Pitx2_Otx2	ENSMUST00000006217.3|Snf8|ENSMUSG00000006058.4|SNF8, ESCRT-II complex subunit, homolog (S. cerevisiae) 	ENSMUST00000107700.3|Snf8|ENSMUSG00000006058.4|SNF8, ESCRT-II complex subunit, homolog (S. cerevisiae)
mm10_v2_chr16_+_13819251_13819369	0.786305	Pitx2_Otx2	ENSMUST00000023362.8|Ntan1|ENSMUSG00000022681.8|N-terminal Asn amidase 	ENSMUST00000115805.1|Ntan1|ENSMUSG00000022681.8|N-terminal Asn amidase
mm10_v2_chr5_-_4758216_4758216	0.781952	Pitx2_Otx2	ENSMUST00000054294.4|Fzd1|ENSMUSG00000044674.4|frizzled homolog 1 (Drosophila)
mm10_v2_chr5_+_130029277_130029340	0.779218	Pitx2_Otx2	ENSMUST00000026608.7|Crcp|ENSMUSG00000025532.10|calcitonin gene-related peptide-receptor component protein
mm10_v2_chr19_+_58728887_58728981	0.778755	Pitx2_Otx2	ENSMUST00000048644.5|Pnliprp1|ENSMUSG00000042179.5|pancreatic lipase related protein 1
mm10_v2_chr17_-_33713372_33713390	0.775223	Pitx2_Otx2	ENSMUST00000173392.1|March2|ENSMUSG00000079557.4|membrane-associated ring finger (C3HC4) 2
mm10_v2_chr9_+_109051153_109051219	0.77515	Pitx2_Otx2	ENSMUST00000155541.1|Shisa5|ENSMUSG00000025647.10|shisa homolog 5 (Xenopus laevis) 	ENSMUST00000120305.1|Shisa5|ENSMUSG00000025647.10|shisa homolog 5 (Xenopus laevis) 	ENSMUST00000154113.1|Shisa5|ENSMUSG00000025647.10|shisa homolog 5 (Xenopus laevis) 	ENSMUST00000128976.1|Shisa5|ENSMUSG00000025647.10|shisa homolog 5 (Xenopus laevis) 	ENSMUST00000135942.1|Shisa5|ENSMUSG00000025647.10|shisa homolog 5 (Xenopus laevis) 	ENSMUST00000143754.1|Shisa5|ENSMUSG00000025647.10|shisa homolog 5 (Xenopus laevis)
mm10_v2_chr19_-_6128208_6128304	0.772095	Pitx2_Otx2	ENSMUST00000025702.7|Snx15|ENSMUSG00000024787.7|sorting nexin 15
mm10_v2_chr8_+_84872105_84872112	0.76727	Pitx2_Otx2	ENSMUST00000136026.1|Syce2|ENSMUSG00000003824.6|synaptonemal complex central element protein 2 	ENSMUST00000170296.1|Syce2|ENSMUSG00000003824.6|synaptonemal complex central element protein 2
mm10_v2_chr7_+_119900099_119900108	0.762368	Pitx2_Otx2	ENSMUST00000106516.1|Lyrm1|ENSMUSG00000030922.5|LYR motif containing 1
mm10_v2_chr4_+_117019400_117019437	0.759076	Pitx2_Otx2	ENSMUST00000106448.2|Eif2b3|ENSMUSG00000028683.8|eukaryotic translation initiation factor 2B, subunit 3 	ENSMUST00000106447.2|Eif2b3|ENSMUSG00000028683.8|eukaryotic translation initiation factor 2B, subunit 3
mm10_v2_chr11_-_84068554_84068604	0.758905	Pitx2_Otx2	ENSMUST00000164891.1|Dusp14|ENSMUSG00000018648.9|dual specificity phosphatase 14
mm10_v2_chr11_+_101155884_101155921	0.751942	Pitx2_Otx2	ENSMUST00000043654.9|Tubg2|ENSMUSG00000045007.9|tubulin, gamma 2
mm10_v2_chr8_+_58911755_58911755	0.751087	Pitx2_Otx2	ENSMUST00000062978.6|BC030500|ENSMUSG00000049946.7|cDNA sequence BC030500
mm10_v2_chr9_+_87022014_87022179	0.750351	Pitx2_Otx2	ENSMUST00000168529.2|Cyb5r4|ENSMUSG00000032872.10|cytochrome b5 reductase 4 	ENSMUST00000174724.1|Cyb5r4|ENSMUSG00000032872.10|cytochrome b5 reductase 4 	ENSMUST00000173126.1|Cyb5r4|ENSMUSG00000032872.10|cytochrome b5 reductase 4
mm10_v2_chr13_+_67863324_67863328	0.748451	Pitx2_Otx2	ENSMUST00000078471.5|BC048507|ENSMUSG00000064063.5|cDNA sequence BC048507
mm10_v2_chr10_+_80292453_80292645	0.744821	Pitx2_Otx2	ENSMUST00000068408.7|Rps15|ENSMUSG00000063457.8|ribosomal protein S15 	ENSMUST00000062674.6|Rps15|ENSMUSG00000063457.8|ribosomal protein S15
mm10_v2_chr7_+_19291070_19291124	0.743148	Pitx2_Otx2	ENSMUST00000108468.3|Rtn2|ENSMUSG00000030401.9|reticulon 2 (Z-band associated protein)
mm10_v2_chr7_+_46841475_46841538	0.741777	Pitx2_Otx2	ENSMUST00000147535.1|Ldha|ENSMUSG00000063229.8|lactate dehydrogenase A
mm10_v2_chr11_+_54866374_54866392	0.739102	Pitx2_Otx2	ENSMUST00000020504.5|Hint1|ENSMUSG00000020267.6|histidine triad nucleotide binding protein 1
mm10_v2_chr8_+_70673364_70673432	0.738134	Pitx2_Otx2	ENSMUST00000146972.1|Lsm4|ENSMUSG00000031848.8|LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)
mm10_v2_chr17_-_56609689_56609771	0.733974	Pitx2_Otx2	ENSMUST00000052832.5|2410015M20Rik|ENSMUSG00000049760.5|RIKEN cDNA 2410015M20 gene
mm10_v2_chr7_-_25297866_25297958	0.733757	Pitx2_Otx2	ENSMUST00000148150.1|Pafah1b3|ENSMUSG00000005447.6|platelet-activating factor acetylhydrolase, isoform 1b, subunit 3 	ENSMUST00000155118.1|Pafah1b3|ENSMUSG00000005447.6|platelet-activating factor acetylhydrolase, isoform 1b, subunit 3
mm10_v2_chr9_+_18427543_18427543	0.733404	Pitx2_Otx2	ENSMUST00000053326.9|Gm5612|ENSMUSG00000074501.5|predicted gene 5612
mm10_v2_chr7_-_141475131_141475168	0.731319	Pitx2_Otx2	ENSMUST00000043870.8|Polr2l|ENSMUSG00000038489.8|polymerase (RNA) II (DNA directed) polypeptide L
mm10_v2_chr5_-_93206428_93206470	0.731135	Pitx2_Otx2	ENSMUST00000144514.1|Ccni|ENSMUSG00000063015.6|cyclin I
mm10_v2_chr12_+_70974621_70974686	0.721799	Pitx2_Otx2	ENSMUST00000160027.1|Psma3|ENSMUSG00000060073.3|proteasome (prosome, macropain) subunit, alpha type 3 	ENSMUST00000160864.1|Psma3|ENSMUSG00000060073.3|proteasome (prosome, macropain) subunit, alpha type 3
mm10_v2_chr11_+_54866413_54866481	0.720536	Pitx2_Otx2	ENSMUST00000117710.1|Hint1|ENSMUSG00000020267.6|histidine triad nucleotide binding protein 1
mm10_v2_chr14_+_55824795_55824889	0.720282	Pitx2_Otx2	ENSMUST00000024179.5|Nfatc4|ENSMUSG00000023411.5|nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 4 	ENSMUST00000172271.1|Nfatc4|ENSMUSG00000023411.5|nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 4
mm10_v2_chr4_-_123718181_123718195	0.719862	Pitx2_Otx2	ENSMUST00000137312.1|Ndufs5|ENSMUSG00000028648.7|NADH dehydrogenase (ubiquinone) Fe-S protein 5 	ENSMUST00000106206.1|Ndufs5|ENSMUSG00000028648.7|NADH dehydrogenase (ubiquinone) Fe-S protein 5
mm10_v2_chr6_+_113442569_113442627	0.719556	Pitx2_Otx2	ENSMUST00000101070.4|Jagn1|ENSMUSG00000051256.9|jagunal homolog 1 (Drosophila)
mm10_v2_chr10_+_78393298_78393309	0.711601	Pitx2_Otx2	ENSMUST00000072739.4|Gm10146|ENSMUSG00000064317.4|predicted gene 10146
mm10_v2_chr2_-_28466266_28466359	0.710864	Pitx2_Otx2	ENSMUST00000127683.1|1700007K13Rik|ENSMUSG00000026831.10|RIKEN cDNA 1700007K13 gene 	ENSMUST00000086370.4|1700007K13Rik|ENSMUSG00000026831.10|RIKEN cDNA 1700007K13 gene
mm10_v2_chr9_-_21149894_21149978	0.709099	Pitx2_Otx2	ENSMUST00000019615.9|Cdc37|ENSMUSG00000019471.9|cell division cycle 37
mm10_v2_chr7_-_45128725_45128748	0.708752	Pitx2_Otx2	ENSMUST00000150350.1|Rpl13a|ENSMUSG00000074129.6|ribosomal protein L13A
mm10_v2_chr11_-_84068766_84068801	0.707238	Pitx2_Otx2	ENSMUST00000018792.5|Dusp14|ENSMUSG00000018648.9|dual specificity phosphatase 14
mm10_v2_chrX_+_36874351_36874368	0.706979	Pitx2_Otx2	ENSMUST00000016452.7|Ube2a|ENSMUSG00000016308.9|ubiquitin-conjugating enzyme E2A
mm10_v2_chr11_-_116027961_116027978	0.700712	Pitx2_Otx2	ENSMUST00000106454.1|H3f3b|ENSMUSG00000016559.8|H3 histone, family 3B
mm10_v2_chr17_-_35673738_35673750	0.697253	Pitx2_Otx2	ENSMUST00000001565.8|Gtf2h4|ENSMUSG00000001524.8|general transcription factor II H, polypeptide 4
mm10_v2_chr17_+_35067317_35067390	0.696874	Pitx2_Otx2	ENSMUST00000173478.1|Ly6g6c|ENSMUSG00000092586.2|lymphocyte antigen 6 complex, locus G6C 	ENSMUST00000174876.1|Ly6g6c|ENSMUSG00000092586.2|lymphocyte antigen 6 complex, locus G6C
mm10_v2_chr15_-_5121172_5121194	0.696529	Pitx2_Otx2	ENSMUST00000090488.2|Gm10250|ENSMUSG00000068706.2|predicted pseudogene 10250
mm10_v2_chr8_-_58911627_58911627	0.695882	Pitx2_Otx2	ENSMUST00000077447.4|Galntl6|ENSMUSG00000061864.6|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 6
mm10_v2_chr12_+_105032638_105032705	0.693678	Pitx2_Otx2	ENSMUST00000021522.3|Glrx5|ENSMUSG00000021102.3|glutaredoxin 5 homolog (S. cerevisiae)
mm10_v2_chr8_-_105568298_105568298	0.693075	Pitx2_Otx2	ENSMUST00000005849.5|Agrp|ENSMUSG00000005705.5|agouti related protein
mm10_v2_chr4_-_117156144_117156243	0.690942	Pitx2_Otx2	ENSMUST00000102696.4|Rps8|ENSMUSG00000047675.9|ribosomal protein S8
mm10_v2_chr6_-_120822680_120822707	0.687077	Pitx2_Otx2	ENSMUST00000019354.8|Atp6v1e1|ENSMUSG00000019210.8|ATPase, H+ transporting, lysosomal V1 subunit E1
mm10_v2_chr15_-_82047579_82047610	0.684361	Pitx2_Otx2	ENSMUST00000166578.1|Nhp2l1|ENSMUSG00000063480.7|NHP2 non-histone chromosome protein 2-like 1 (S. cerevisiae) 	ENSMUST00000080622.7|Nhp2l1|ENSMUSG00000063480.7|NHP2 non-histone chromosome protein 2-like 1 (S. cerevisiae)
mm10_v2_chr6_+_136808248_136808261	0.684328	Pitx2_Otx2	ENSMUST00000074556.4|H2afj|ENSMUSG00000060032.4|H2A histone family, member J
mm10_v2_chr6_+_113623959_113624037	0.683377	Pitx2_Otx2	ENSMUST00000035673.7|Vhl|ENSMUSG00000033933.7|von Hippel-Lindau tumor suppressor
mm10_v2_chr11_-_120796369_120796405	0.679921	Pitx2_Otx2	ENSMUST00000143139.1|Dus1l|ENSMUSG00000025155.9|dihydrouridine synthase 1-like (S. cerevisiae) 	ENSMUST00000129955.1|Dus1l|ENSMUSG00000025155.9|dihydrouridine synthase 1-like (S. cerevisiae) 	ENSMUST00000026151.4|Dus1l|ENSMUSG00000025155.9|dihydrouridine synthase 1-like (S. cerevisiae) 	ENSMUST00000167023.1|Dus1l|ENSMUSG00000025155.9|dihydrouridine synthase 1-like (S. cerevisiae) 	ENSMUST00000106133.1|Dus1l|ENSMUSG00000025155.9|dihydrouridine synthase 1-like (S. cerevisiae) 	ENSMUST00000106135.1|Dus1l|ENSMUSG00000025155.9|dihydrouridine synthase 1-like (S. cerevisiae)
mm10_v2_chr9_-_96478596_96478622	0.677528	Pitx2_Otx2	ENSMUST00000071301.4|Rnf7|ENSMUSG00000051234.5|ring finger protein 7
mm10_v2_chr2_+_151542483_151542646	0.676078	Pitx2_Otx2	ENSMUST00000044011.5|Fkbp1a|ENSMUSG00000032966.8|FK506 binding protein 1a
mm10_v2_chr13_+_14613242_14613272	0.675061	Pitx2_Otx2	ENSMUST00000170836.2|Psma2|ENSMUSG00000015671.10|proteasome (prosome, macropain) subunit, alpha type 2
mm10_v2_chr9_+_104566677_104566706	0.674633	Pitx2_Otx2	ENSMUST00000157006.1|Cpne4|ENSMUSG00000032564.9|copine IV
mm10_v2_chr13_-_21501418_21501418	0.673324	Pitx2_Otx2	ENSMUST00000044043.2|Gm11273|ENSMUSG00000079941.1|predicted gene 11273
mm10_v2_chr1_-_75219245_75219262	0.671733	Pitx2_Otx2	ENSMUST00000079464.6|Tuba4a|ENSMUSG00000026202.7|tubulin, alpha 4A
mm10_v2_chr16_+_55966275_55966334	0.670322	Pitx2_Otx2	ENSMUST00000023269.4|RPL24|ENSMUSG00000098274.1|60S ribosomal protein L24
mm10_v2_chr11_+_69995874_69995897	0.669989	Pitx2_Otx2	ENSMUST00000101526.2|Phf23|ENSMUSG00000018572.4|PHD finger protein 23
mm10_v2_chr2_-_151973840_151973966	0.66502	Pitx2_Otx2	ENSMUST00000109865.1|Fam110a|ENSMUSG00000027459.10|family with sequence similarity 110, member A 	ENSMUST00000109864.1|Fam110a|ENSMUSG00000027459.10|family with sequence similarity 110, member A
mm10_v2_chr8_+_125734203_125734307	0.659847	Pitx2_Otx2	ENSMUST00000034313.6|Ntpcr|ENSMUSG00000031851.8|nucleoside-triphosphatase, cancer-related 	ENSMUST00000065135.5|Ntpcr|ENSMUSG00000031851.8|nucleoside-triphosphatase, cancer-related
mm10_v2_chr11_+_5520652_5520659	0.658466	Pitx2_Otx2	ENSMUST00000063084.9|Xbp1|ENSMUSG00000020484.12|X-box binding protein 1
mm10_v2_chr15_+_98167806_98167873	0.658342	Pitx2_Otx2	ENSMUST00000031914.4|AI836003|ENSMUSG00000029875.4|expressed sequence AI836003
mm10_v2_chr8_+_88174560_88174560	0.658163	Pitx2_Otx2	ENSMUST00000074808.2|9430002A10Rik|ENSMUSG00000062704.2|RIKEN cDNA 9430002A10 gene
mm10_v2_chr2_+_127080252_127080277	0.657678	Pitx2_Otx2	ENSMUST00000142737.1|Blvra|ENSMUSG00000001999.9|biliverdin reductase A
mm10_v2_chr4_-_35845204_35845204	0.657086	Pitx2_Otx2	ENSMUST00000164772.1|Lingo2|ENSMUSG00000045083.8|leucine rich repeat and Ig domain containing 2 	ENSMUST00000065173.2|Lingo2|ENSMUSG00000045083.8|leucine rich repeat and Ig domain containing 2
mm10_v2_chr14_-_26207041_26207041	0.654847	Pitx2_Otx2	ENSMUST00000022418.8|Tmem254b|ENSMUSG00000021867.10|transmembrane protein 254b
mm10_v2_chr2_-_167661496_167661591	0.649869	Pitx2_Otx2	ENSMUST00000125544.2|Gm20431|ENSMUSG00000089739.2|predicted gene 20431 	ENSMUST00000006587.6|Tmem189|ENSMUSG00000090213.1|transmembrane protein 189
mm10_v2_chrX_-_157492280_157492340	0.647876	Pitx2_Otx2	ENSMUST00000112529.1|Sms|ENSMUSG00000071708.5|spermine synthase
mm10_v2_chr11_+_117199641_117199663	0.64376	Pitx2_Otx2	ENSMUST00000093907.4|Sept9|ENSMUSG00000059248.7|septin 9
mm10_v2_chr7_-_15946070_15946108	0.640916	Pitx2_Otx2	ENSMUST00000044158.8|Gltscr2|ENSMUSG00000041560.8|glioma tumor suppressor candidate region gene 2
mm10_v2_chr11_+_51619731_51619813	0.639412	Pitx2_Otx2	ENSMUST00000127405.1|Nhp2|ENSMUSG00000001056.3|NHP2 ribonucleoprotein
mm10_v2_chr2_+_32625431_32625442	0.639136	Pitx2_Otx2	ENSMUST00000113277.1|Ak1|ENSMUSG00000026817.8|adenylate kinase 1
mm10_v2_chr10_+_7667503_7667558	0.635135	Pitx2_Otx2	ENSMUST00000040135.8|Nup43|ENSMUSG00000040034.9|nucleoporin 43
mm10_v2_chr6_-_72235559_72235618	0.634667	Pitx2_Otx2	ENSMUST00000042646.7|Atoh8|ENSMUSG00000037621.7|atonal homolog 8 (Drosophila)
mm10_v2_chr8_-_70897407_70897443	0.634073	Pitx2_Otx2	ENSMUST00000054220.8|Rpl18a|ENSMUSG00000045128.8|ribosomal protein L18A
mm10_v2_chr11_-_59809774_59810016	0.633466	Pitx2_Otx2	ENSMUST00000047706.2|Flcn|ENSMUSG00000032633.6|folliculin 	ENSMUST00000102697.3|Flcn|ENSMUSG00000032633.6|folliculin
mm10_v2_chr19_+_10206033_10206033	0.632157	Pitx2_Otx2	ENSMUST00000166412.1|Tmem258|ENSMUSG00000036372.8|transmembrane protein 258
mm10_v2_chr11_+_69995777_69995870	0.632122	Pitx2_Otx2	ENSMUST00000018716.3|Phf23|ENSMUSG00000018572.4|PHD finger protein 23
mm10_v2_chr6_+_104492790_104492965	0.629578	Pitx2_Otx2	ENSMUST00000161446.1|Cntn6|ENSMUSG00000030092.8|contactin 6 	ENSMUST00000161070.1|Cntn6|ENSMUSG00000030092.8|contactin 6 	ENSMUST00000089215.5|Cntn6|ENSMUSG00000030092.8|contactin 6
mm10_v2_chrX_-_140956675_140956728	0.628741	Pitx2_Otx2	ENSMUST00000033805.8|Psmd10|ENSMUSG00000031429.8|proteasome (prosome, macropain) 26S subunit, non-ATPase, 10 	ENSMUST00000112978.1|Psmd10|ENSMUSG00000031429.8|proteasome (prosome, macropain) 26S subunit, non-ATPase, 10
mm10_v2_chr5_-_23844085_23844161	0.627976	Pitx2_Otx2	ENSMUST00000030851.6|Tomm7|ENSMUSG00000028998.6|translocase of outer mitochondrial membrane 7 homolog (yeast)
mm10_v2_chr5_-_127617372_127617426	0.624347	Pitx2_Otx2	ENSMUST00000031367.8|Slc15a4|ENSMUSG00000029416.11|solute carrier family 15, member 4
mm10_v2_chr17_+_80224441_80224493	0.623516	Pitx2_Otx2	ENSMUST00000069486.6|Gemin6|ENSMUSG00000055760.6|gem (nuclear organelle) associated protein 6
mm10_v2_chr10_-_80900749_80900969	0.620112	Pitx2_Otx2	ENSMUST00000020440.6|Timm13|ENSMUSG00000020219.6|translocase of inner mitochondrial membrane 13
mm10_v2_chr8_-_70510552_70510584	0.619015	Pitx2_Otx2	ENSMUST00000125184.1|Uba52|ENSMUSG00000090137.2|ubiquitin A-52 residue ribosomal protein fusion product 1
mm10_v2_chr13_-_99412816_99412864	0.618535	Pitx2_Otx2	ENSMUST00000180808.1|6430562O15Rik|ENSMUSG00000097828.1|RIKEN cDNA 6430562O15 gene
mm10_v2_chr3_-_54915867_54915887	0.617189	Pitx2_Otx2	ENSMUST00000070342.3|Sertm1|ENSMUSG00000056306.5|serine rich and transmembrane domain containing 1
mm10_v2_chr8_+_84901928_84901992	0.615743	Pitx2_Otx2	ENSMUST00000067060.7|Klf1|ENSMUSG00000054191.7|Kruppel-like factor 1 (erythroid)
mm10_v2_chr18_-_74207771_74207818	0.610696	Pitx2_Otx2	ENSMUST00000040188.8|Ska1|ENSMUSG00000036223.9|spindle and kinetochore associated complex subunit 1 	ENSMUST00000177604.1|Ska1|ENSMUSG00000036223.9|spindle and kinetochore associated complex subunit 1
mm10_v2_chr7_-_67645195_67645273	0.607692	Pitx2_Otx2	ENSMUST00000032775.5|Lrrc28|ENSMUSG00000030556.6|leucine rich repeat containing 28 	ENSMUST00000053950.2|Lrrc28|ENSMUSG00000030556.6|leucine rich repeat containing 28
mm10_v2_chr16_+_30065333_30065351	0.606559	Pitx2_Otx2	ENSMUST00000023171.7|Hes1|ENSMUSG00000022528.7|hairy and enhancer of split 1 (Drosophila)
mm10_v2_chr2_-_132247747_132247807	0.605885	Pitx2_Otx2	ENSMUST00000110163.1|Tmem230|ENSMUSG00000027341.4|transmembrane protein 230 	ENSMUST00000180286.1|Tmem230|ENSMUSG00000027341.4|transmembrane protein 230 	ENSMUST00000028816.2|Tmem230|ENSMUSG00000027341.4|transmembrane protein 230
mm10_v2_chr10_+_81606883_81607025	0.603109	Pitx2_Otx2	ENSMUST00000119753.1|BC025920|ENSMUSG00000074862.5|cDNA sequence BC025920 	ENSMUST00000121138.1|BC025920|ENSMUSG00000074862.5|cDNA sequence BC025920 	ENSMUST00000099442.3|BC025920|ENSMUSG00000074862.5|cDNA sequence BC025920
mm10_v2_chr17_-_33824346_33824562	0.603047	Pitx2_Otx2	ENSMUST00000173879.1|Rps28|ENSMUSG00000067288.6|ribosomal protein S28 	ENSMUST00000166693.2|Rps28|ENSMUSG00000067288.6|ribosomal protein S28 	ENSMUST00000173019.1|Rps28|ENSMUSG00000067288.6|ribosomal protein S28 	ENSMUST00000087342.6|Rps28|ENSMUSG00000067288.6|ribosomal protein S28 	ENSMUST00000173844.1|Rps28|ENSMUSG00000067288.6|ribosomal protein S28
mm10_v2_chr5_-_110343009_110343039	0.603037	Pitx2_Otx2	ENSMUST00000058016.9|P2rx2|ENSMUSG00000029503.10|purinergic receptor P2X, ligand-gated ion channel, 2 	ENSMUST00000112478.3|P2rx2|ENSMUSG00000029503.10|purinergic receptor P2X, ligand-gated ion channel, 2
mm10_v2_chr17_-_74323896_74323954	0.602757	Pitx2_Otx2	ENSMUST00000164832.1|Dpy30|ENSMUSG00000024067.7|dpy-30 homolog (C. elegans)
mm10_v2_chr13_-_51203065_51203065	0.602377	Pitx2_Otx2	ENSMUST00000091708.4|Hist1h2al|ENSMUSG00000091383.1|histone cluster 1, H2al
mm10_v2_chr7_+_16992708_16992708	0.601597	Pitx2_Otx2	ENSMUST00000094805.4|Ccdc8|ENSMUSG00000041117.8|coiled-coil domain containing 8
mm10_v2_chr8_-_70510322_70510422	0.600948	Pitx2_Otx2	ENSMUST00000140679.1|Uba52|ENSMUSG00000090137.2|ubiquitin A-52 residue ribosomal protein fusion product 1 	ENSMUST00000129909.1|Uba52|ENSMUSG00000090137.2|ubiquitin A-52 residue ribosomal protein fusion product 1 	ENSMUST00000081940.4|Uba52|ENSMUSG00000090137.2|ubiquitin A-52 residue ribosomal protein fusion product 1
mm10_v2_chr3_+_131112785_131112803	0.600795	Pitx2_Otx2	ENSMUST00000098611.3|Lef1|ENSMUSG00000027985.8|lymphoid enhancer binding factor 1
mm10_v2_chr2_-_163645125_163645136	0.597253	Pitx2_Otx2	ENSMUST00000017851.3|Serinc3|ENSMUSG00000017707.9|serine incorporator 3
mm10_v2_chr10_-_40302186_40302206	0.594964	Pitx2_Otx2	ENSMUST00000099945.4|Amd1|ENSMUSG00000075232.4|S-adenosylmethionine decarboxylase 1
mm10_v2_chr2_+_181715005_181715082	0.593526	Pitx2_Otx2	ENSMUST00000071585.3|Oprl1|ENSMUSG00000027584.10|opioid receptor-like 1 	ENSMUST00000148334.1|Oprl1|ENSMUSG00000027584.10|opioid receptor-like 1 	ENSMUST00000108763.1|Oprl1|ENSMUSG00000027584.10|opioid receptor-like 1
mm10_v2_chr2_-_24048857_24048868	0.592418	Pitx2_Otx2	ENSMUST00000114497.1|Hnmt|ENSMUSG00000026986.8|histamine N-methyltransferase
mm10_v2_chr9_-_107985863_107985893	0.584195	Pitx2_Otx2	ENSMUST00000048568.4|Fam212a|ENSMUSG00000042106.4|family with sequence similarity 212, member A
mm10_v2_chr12_-_78980758_78980817	0.584044	Pitx2_Otx2	ENSMUST00000174072.1|Tmem229b|ENSMUSG00000046157.7|transmembrane protein 229B
mm10_v2_chr5_-_90223923_90224020	0.58371	Pitx2_Otx2	ENSMUST00000118816.1|Cox18|ENSMUSG00000035505.8|cytochrome c oxidase assembly protein 18 	ENSMUST00000048363.7|Cox18|ENSMUSG00000035505.8|cytochrome c oxidase assembly protein 18
mm10_v2_chr5_-_17888884_17888959	0.583356	Pitx2_Otx2	ENSMUST00000169095.1|Cd36|ENSMUSG00000002944.9|CD36 antigen
mm10_v2_chr15_-_81871883_81871916	0.582842	Pitx2_Otx2	ENSMUST00000023117.8|Phf5a|ENSMUSG00000061360.7|PHD finger protein 5A
mm10_v2_chr7_+_19489045_19489067	0.582107	Pitx2_Otx2	ENSMUST00000011407.7|Exoc3l2|ENSMUSG00000011263.9|exocyst complex component 3-like 2 	ENSMUST00000137613.1|Exoc3l2|ENSMUSG00000011263.9|exocyst complex component 3-like 2
mm10_v2_chr11_-_102925086_102925130	0.580084	Pitx2_Otx2	ENSMUST00000021311.9|Kif18b|ENSMUSG00000051378.10|kinesin family member 18B
mm10_v2_chr9_-_64341288_64341311	0.57747	Pitx2_Otx2	ENSMUST00000068367.7|Dis3l|ENSMUSG00000032396.11|DIS3 mitotic control homolog (S. cerevisiae)-like
mm10_v2_chr15_+_80948484_80948549	0.577209	Pitx2_Otx2	ENSMUST00000023043.2|Adsl|ENSMUSG00000022407.2|adenylosuccinate lyase 	ENSMUST00000168756.1|Adsl|ENSMUSG00000022407.2|adenylosuccinate lyase 	ENSMUST00000164806.1|Adsl|ENSMUSG00000022407.2|adenylosuccinate lyase
mm10_v2_chr11_-_53430417_53430434	0.575005	Pitx2_Otx2	ENSMUST00000109019.1|Uqcrq|ENSMUSG00000044894.8|ubiquinol-cytochrome c reductase, complex III subunit VII
mm10_v2_chr7_+_101896817_101896961	0.572961	Pitx2_Otx2	ENSMUST00000143835.1|Anapc15|ENSMUSG00000030649.11|anaphase prompoting complex C subunit 15
mm10_v2_chr6_+_87009836_87009893	0.572579	Pitx2_Otx2	ENSMUST00000032060.8|Nfu1|ENSMUSG00000029993.10|NFU1 iron-sulfur cluster scaffold homolog (S. cerevisiae) 	ENSMUST00000117583.1|Nfu1|ENSMUSG00000029993.10|NFU1 iron-sulfur cluster scaffold homolog (S. cerevisiae) 	ENSMUST00000144776.1|Nfu1|ENSMUSG00000029993.10|NFU1 iron-sulfur cluster scaffold homolog (S. cerevisiae)
mm10_v2_chr15_+_76904070_76904092	0.57188	Pitx2_Otx2	ENSMUST00000004072.8|Rpl8|ENSMUSG00000003970.8|ribosomal protein L8
mm10_v2_chr16_-_4719148_4719164	0.571679	Pitx2_Otx2	ENSMUST00000115851.3|Nmral1|ENSMUSG00000063445.8|NmrA-like family domain containing 1
mm10_v2_chr11_-_97996171_97996190	0.571474	Pitx2_Otx2	ENSMUST00000042971.9|Arl5c|ENSMUSG00000038352.9|ADP-ribosylation factor-like 5C
mm10_v2_chr11_+_51967649_51967709	0.571322	Pitx2_Otx2	ENSMUST00000102763.4|Cdkn2aipnl|ENSMUSG00000020392.8|CDKN2A interacting protein N-terminal like
mm10_v2_chr9_-_20898592_20898631	0.571279	Pitx2_Otx2	ENSMUST00000004206.8|Eif3g|ENSMUSG00000070319.5|eukaryotic translation initiation factor 3, subunit G
mm10_v2_chr7_+_28267809_28267932	0.571118	Pitx2_Otx2	ENSMUST00000059596.6|Eid2|ENSMUSG00000046058.6|EP300 interacting inhibitor of differentiation 2
mm10_v2_chr7_-_101903783_101903786	0.57019	Pitx2_Otx2	ENSMUST00000106969.1|Tomt|ENSMUSG00000078630.1|transmembrane O-methyltransferase
mm10_v2_chr8_+_95825353_95825354	0.569257	Pitx2_Otx2	ENSMUST00000074053.4|Gm10094|ENSMUSG00000061104.4|predicted gene 10094
mm10_v2_chr16_-_4719078_4719126	0.566746	Pitx2_Otx2	ENSMUST00000120056.1|Nmral1|ENSMUSG00000063445.8|NmrA-like family domain containing 1 	ENSMUST00000074970.7|Nmral1|ENSMUSG00000063445.8|NmrA-like family domain containing 1
mm10_v2_chr4_+_43383449_43383515	0.563962	Pitx2_Otx2	ENSMUST00000135216.1|Rusc2|ENSMUSG00000035969.9|RUN and SH3 domain containing 2 	ENSMUST00000152322.1|Rusc2|ENSMUSG00000035969.9|RUN and SH3 domain containing 2
mm10_v2_chr5_-_125294107_125294136	0.56386	Pitx2_Otx2	ENSMUST00000127148.1|Scarb1|ENSMUSG00000037936.9|scavenger receptor class B, member 1
mm10_v2_chr14_-_47418407_47418407	0.562965	Pitx2_Otx2	ENSMUST00000043296.3|Dlgap5|ENSMUSG00000037544.7|discs, large (Drosophila) homolog-associated protein 5
mm10_v2_chr4_-_150909812_150909926	0.560715	Pitx2_Otx2	ENSMUST00000134751.1|Park7|ENSMUSG00000028964.8|Parkinson disease (autosomal recessive, early onset) 7 	ENSMUST00000030805.7|Park7|ENSMUSG00000028964.8|Parkinson disease (autosomal recessive, early onset) 7
mm10_v2_chr7_+_4915202_4915230	0.56066	Pitx2_Otx2	ENSMUST00000116354.2|Zfp628|ENSMUSG00000074406.4|zinc finger protein 628
mm10_v2_chr3_-_54807770_54807804	0.560329	Pitx2_Otx2	ENSMUST00000044373.5|Rfxap|ENSMUSG00000036615.5|regulatory factor X-associated protein
mm10_v2_chrX_-_139714481_139714507	0.559956	Pitx2_Otx2	ENSMUST00000183728.1|Gm15013|ENSMUSG00000098559.1|predicted gene 15013
mm10_v2_chr7_+_66060338_66060338	0.559333	Pitx2_Otx2	ENSMUST00000153609.1|Snrpa1|ENSMUSG00000030512.7|small nuclear ribonucleoprotein polypeptide A'
mm10_v2_chr10_+_42502030_42502041	0.557251	Pitx2_Otx2	ENSMUST00000105500.1|Snx3|ENSMUSG00000019804.6|sorting nexin 3 	ENSMUST00000019939.5|Snx3|ENSMUSG00000019804.6|sorting nexin 3
mm10_v2_chr7_+_126928844_126928899	0.556501	Pitx2_Otx2	ENSMUST00000032924.5|Kctd13|ENSMUSG00000030685.5|potassium channel tetramerisation domain containing 13
mm10_v2_chr1_+_133309778_133309890	0.555598	Pitx2_Otx2	ENSMUST00000094557.4|Golt1a|ENSMUSG00000041717.9|golgi transport 1 homolog A (S. cerevisiae) 	ENSMUST00000183738.1|Kiss1|ENSMUSG00000091251.3|KiSS-1 metastasis-suppressor 	ENSMUST00000185157.1|Kiss1|ENSMUSG00000091251.3|KiSS-1 metastasis-suppressor 	ENSMUST00000184603.1|GOLT1A|ENSMUSG00000098306.1|KISS1 isoform e  	ENSMUST00000183457.1|Golt1a|ENSMUSG00000041717.9|golgi transport 1 homolog A (S. cerevisiae)
mm10_v2_chr11_-_58801944_58801968	0.555572	Pitx2_Otx2	ENSMUST00000094156.4|Fam183b|ENSMUSG00000049154.5|family with sequence similarity 183, member B 	ENSMUST00000060581.3|Fam183b|ENSMUSG00000049154.5|family with sequence similarity 183, member B
mm10_v2_chr13_-_8940977_8940977	0.555318	Pitx2_Otx2	ENSMUST00000071184.2|Rpl10a-ps2|ENSMUSG00000061988.2|ribosomal protein L10A, pseudogene 2
mm10_v2_chr5_-_93206489_93206498	0.553867	Pitx2_Otx2	ENSMUST00000058550.8|Ccni|ENSMUSG00000063015.6|cyclin I
mm10_v2_chr7_-_128418154_128418192	0.553657	Pitx2_Otx2	ENSMUST00000033133.5|Rgs10|ENSMUSG00000030844.5|regulator of G-protein signalling 10
mm10_v2_chr17_+_46711459_46711497	0.552447	Pitx2_Otx2	ENSMUST00000002840.8|Pex6|ENSMUSG00000002763.10|peroxisomal biogenesis factor 6
mm10_v2_chr1_+_143739016_143739050	0.551297	Pitx2_Otx2	ENSMUST00000145969.1|Glrx2|ENSMUSG00000018196.12|glutaredoxin 2 (thioltransferase)
mm10_v2_chr3_+_96629919_96629955	0.549658	Pitx2_Otx2	ENSMUST00000048915.6|Rbm8a|ENSMUSG00000038374.6|RNA binding motif protein 8a
mm10_v2_chr7_-_19770509_19770547	0.548599	Pitx2_Otx2	ENSMUST00000003061.7|Bcam|ENSMUSG00000002980.8|basal cell adhesion molecule
mm10_v2_chr15_-_93336800_93336852	0.548247	Pitx2_Otx2	ENSMUST00000080299.6|Yaf2|ENSMUSG00000022634.9|YY1 associated factor 2
mm10_v2_chr7_+_19212521_19212546	0.547775	Pitx2_Otx2	ENSMUST00000060225.4|Gpr4|ENSMUSG00000044317.6|G protein-coupled receptor 4
mm10_v2_chr2_-_152332639_152332678	0.546086	Pitx2_Otx2	ENSMUST00000028964.7|Rbck1|ENSMUSG00000027466.9|RanBP-type and C3HC4-type zinc finger containing 1
mm10_v2_chr7_-_29180699_29180710	0.545941	Pitx2_Otx2	ENSMUST00000059642.10|Psmd8|ENSMUSG00000030591.10|proteasome (prosome, macropain) 26S subunit, non-ATPase, 8
mm10_v2_chr4_+_95579463_95579499	0.544524	Pitx2_Otx2	ENSMUST00000150830.1|Fggy|ENSMUSG00000028573.12|FGGY carbohydrate kinase domain containing 	ENSMUST00000134012.2|Fggy|ENSMUSG00000028573.12|FGGY carbohydrate kinase domain containing
mm10_v2_chr2_+_167932327_167932379	0.542453	Pitx2_Otx2	ENSMUST00000029053.7|Ptpn1|ENSMUSG00000027540.7|protein tyrosine phosphatase, non-receptor type 1
mm10_v2_chr12_+_16810940_16810978	0.542199	Pitx2_Otx2	ENSMUST00000020908.7|E2f6|ENSMUSG00000057469.7|E2F transcription factor 6
mm10_v2_chr19_+_33822908_33822908	0.541683	Pitx2_Otx2	ENSMUST00000042061.6|Gm5519|ENSMUSG00000037603.6|predicted pseudogene 5519
mm10_v2_chr11_+_44617310_44617336	0.540465	Pitx2_Otx2	ENSMUST00000081265.5|Ebf1|ENSMUSG00000057098.8|early B cell factor 1 	ENSMUST00000101326.3|Ebf1|ENSMUSG00000057098.8|early B cell factor 1 	ENSMUST00000109268.1|Ebf1|ENSMUSG00000057098.8|early B cell factor 1
mm10_v2_chr8_+_23139030_23139061	0.540388	Pitx2_Otx2	ENSMUST00000121075.1|Ank1|ENSMUSG00000031543.12|ankyrin 1, erythroid
mm10_v2_chr2_-_73214323_73214333	0.536009	Pitx2_Otx2	ENSMUST00000100015.4|Ola1|ENSMUSG00000027108.9|Obg-like ATPase 1
mm10_v2_chr2_+_61711694_61711786	0.533432	Pitx2_Otx2	ENSMUST00000028278.7|Psmd14|ENSMUSG00000026914.9|proteasome (prosome, macropain) 26S subunit, non-ATPase, 14
mm10_v2_chr10_+_128747850_128747895	0.531264	Pitx2_Otx2	ENSMUST00000163377.2|Wibg|ENSMUSG00000064030.8|within bgcn homolog (Drosophila)
mm10_v2_chr4_-_130279205_130279231	0.531058	Pitx2_Otx2	ENSMUST00000120126.2|Serinc2|ENSMUSG00000023232.11|serine incorporator 2
mm10_v2_chr17_+_33824591_33824644	0.530868	Pitx2_Otx2	ENSMUST00000048249.6|Ndufa7|ENSMUSG00000041881.6|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7 (B14.5a)
mm10_v2_chr15_+_99392882_99392903	0.530256	Pitx2_Otx2	ENSMUST00000023749.8|Tmbim6|ENSMUSG00000023010.8|transmembrane BAX inhibitor motif containing 6
mm10_v2_chr17_+_29090969_29091020	0.528111	Pitx2_Otx2	ENSMUST00000119901.1|Cdkn1a|ENSMUSG00000023067.7|cyclin-dependent kinase inhibitor 1A (P21)
mm10_v2_chr7_+_141447645_141447850	0.525835	Pitx2_Otx2	ENSMUST00000106004.1|Rplp2|ENSMUSG00000025508.7|ribosomal protein, large P2 	ENSMUST00000106003.1|Rplp2|ENSMUSG00000025508.7|ribosomal protein, large P2
mm10_v2_chr11_-_121388186_121388267	0.525721	Pitx2_Otx2	ENSMUST00000106107.2|Rab40b|ENSMUSG00000025170.7|Rab40b, member RAS oncogene family
mm10_v2_chr14_+_73173825_73173884	0.525597	Pitx2_Otx2	ENSMUST00000166875.1|Rcbtb2|ENSMUSG00000022106.8|regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2
mm10_v2_chr11_-_73138245_73138310	0.524986	Pitx2_Otx2	ENSMUST00000052140.2|Gsg2|ENSMUSG00000050107.2|germ cell-specific gene 2
mm10_v2_chr11_-_120348091_120348189	0.524755	Pitx2_Otx2	ENSMUST00000106215.4|Actg1|ENSMUSG00000062825.9|actin, gamma, cytoplasmic 1
mm10_v2_chr7_+_97720839_97720839	0.520933	Pitx2_Otx2	ENSMUST00000070021.1|Gm9990|ENSMUSG00000056106.1|predicted gene 9990
mm10_v2_chr13_+_108046411_108046424	0.520727	Pitx2_Otx2	ENSMUST00000095458.4|Smim15|ENSMUSG00000071180.4|small integral membrane protein 15
mm10_v2_chr7_-_19861299_19861299	0.520533	Pitx2_Otx2	ENSMUST00000014830.7|Ceacam16|ENSMUSG00000014686.7|carcinoembryonic antigen-related cell adhesion molecule 16
mm10_v2_chr7_-_118584669_118584741	0.520306	Pitx2_Otx2	ENSMUST00000044195.4|Tmc7|ENSMUSG00000042246.4|transmembrane channel-like gene family 7
mm10_v2_chr7_-_126566364_126566416	0.518644	Pitx2_Otx2	ENSMUST00000032992.5|Eif3c|ENSMUSG00000030738.10|eukaryotic translation initiation factor 3, subunit C
mm10_v2_chr10_-_63421739_63421739	0.51638	Pitx2_Otx2	ENSMUST00000054760.4|Gm7075|ENSMUSG00000048185.4|predicted gene 7075
mm10_v2_chr11_+_3963970_3963983	0.515734	Pitx2_Otx2	ENSMUST00000020705.4|Pes1|ENSMUSG00000020430.6|pescadillo homolog 1, containing BRCT domain (zebrafish) 	ENSMUST00000109985.1|Pes1|ENSMUSG00000020430.6|pescadillo homolog 1, containing BRCT domain (zebrafish)
mm10_v2_chr5_+_110330697_110330767	0.515401	Pitx2_Otx2	ENSMUST00000112481.1|Pole|ENSMUSG00000007080.8|polymerase (DNA directed), epsilon
mm10_v2_chr10_+_81384457_81384507	0.514979	Pitx2_Otx2	ENSMUST00000142346.1|Dohh|ENSMUSG00000078440.3|deoxyhypusine hydroxylase/monooxygenase
mm10_v2_chr19_-_7206234_7206316	0.51449	Pitx2_Otx2	ENSMUST00000123594.1|Otub1|ENSMUSG00000024767.5|OTU domain, ubiquitin aldehyde binding 1 	ENSMUST00000025679.4|Otub1|ENSMUSG00000024767.5|OTU domain, ubiquitin aldehyde binding 1
mm10_v2_chr11_-_106388066_106388105	0.510437	Pitx2_Otx2	ENSMUST00000106813.2|Icam2|ENSMUSG00000001029.9|intercellular adhesion molecule 2 	ENSMUST00000141146.1|Icam2|ENSMUSG00000001029.9|intercellular adhesion molecule 2
mm10_v2_chr19_+_8892987_8893052	0.509237	Pitx2_Otx2	ENSMUST00000096249.5|Ints5|ENSMUSG00000071652.5|integrator complex subunit 5
mm10_v2_chr16_-_91931643_91931687	0.507816	Pitx2_Otx2	ENSMUST00000023677.3|Atp5o|ENSMUSG00000022956.4|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit
mm10_v2_chr10_-_63927434_63927434	0.507594	Pitx2_Otx2	ENSMUST00000079279.3|Gm10118|ENSMUSG00000062561.3|predicted gene 10118
mm10_v2_chr5_-_142905816_142905832	0.506713	Pitx2_Otx2	ENSMUST00000171419.1|Actb|ENSMUSG00000029580.8|actin, beta
mm10_v2_chr11_+_54902743_54902772	0.506574	Pitx2_Otx2	ENSMUST00000082430.3|Gpx3|ENSMUSG00000018339.5|glutathione peroxidase 3
mm10_v2_chr8_+_114133557_114133597	0.506031	Pitx2_Otx2	ENSMUST00000073521.5|Nudt7|ENSMUSG00000031767.7|nudix (nucleoside diphosphate linked moiety X)-type motif 7 	ENSMUST00000066514.6|Nudt7|ENSMUSG00000031767.7|nudix (nucleoside diphosphate linked moiety X)-type motif 7
mm10_v2_chr2_-_168734236_168734339	0.505023	Pitx2_Otx2	ENSMUST00000109175.2|Atp9a|ENSMUSG00000027546.9|ATPase, class II, type 9A
mm10_v2_chr4_+_126677630_126677646	0.5022	Pitx2_Otx2	ENSMUST00000030642.2|Psmb2|ENSMUSG00000028837.2|proteasome (prosome, macropain) subunit, beta type 2
mm10_v2_chr11_+_116848901_116848901	0.501925	Pitx2_Otx2	ENSMUST00000143184.1|Mettl23|ENSMUSG00000090266.4|methyltransferase like 23
mm10_v2_chr2_-_30093642_30093679	0.501023	Pitx2_Otx2	ENSMUST00000102865.4|Zdhhc12|ENSMUSG00000015335.10|zinc finger, DHHC domain containing 12
mm10_v2_chr4_+_152199805_152199821	0.500687	Pitx2_Otx2	ENSMUST00000105652.2|Acot7|ENSMUSG00000028937.8|acyl-CoA thioesterase 7
mm10_v2_chr15_-_85811090_85811248	0.499083	Pitx2_Otx2	ENSMUST00000125947.1|Cdpf1|ENSMUSG00000064284.6|cysteine rich, DPF motif domain containing 1
mm10_v2_chr7_+_16891755_16891800	0.498419	Pitx2_Otx2	ENSMUST00000078182.4|Gng8|ENSMUSG00000063594.4|guanine nucleotide binding protein (G protein), gamma 8
mm10_v2_chr13_-_118387224_118387275	0.496788	Pitx2_Otx2	ENSMUST00000022245.8|Mrps30|ENSMUSG00000021731.9|mitochondrial ribosomal protein S30
mm10_v2_chr2_-_166581969_166582071	0.496329	Pitx2_Otx2	ENSMUST00000109246.1|Prex1|ENSMUSG00000039621.7|phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1
mm10_v2_chr5_+_129895723_129895800	0.495869	Pitx2_Otx2	ENSMUST00000041466.7|2410018M08Rik|ENSMUSG00000034173.7|RIKEN cDNA 2410018M08 gene 	ENSMUST00000077320.2|2410018M08Rik|ENSMUSG00000034173.7|RIKEN cDNA 2410018M08 gene
mm10_v2_chr5_+_115559467_115559499	0.495186	Pitx2_Otx2	ENSMUST00000086519.5|Rplp0|ENSMUSG00000067274.4|ribosomal protein, large, P0
mm10_v2_chr5_-_123132651_123132692	0.494787	Pitx2_Otx2	ENSMUST00000031401.5|Rhof|ENSMUSG00000029449.5|ras homolog gene family, member f
mm10_v2_chr7_-_116084635_116084635	0.494403	Pitx2_Otx2	ENSMUST00000111755.3|Gm4353|ENSMUSG00000091900.2|predicted gene 4353
mm10_v2_chr18_-_9450097_9450161	0.493077	Pitx2_Otx2	ENSMUST00000053917.4|Ccny|ENSMUSG00000024286.7|cyclin Y
mm10_v2_chr11_+_97450136_97450180	0.492079	Pitx2_Otx2	ENSMUST00000107601.1|Arhgap23|ENSMUSG00000049807.10|Rho GTPase activating protein 23
mm10_v2_chr11_-_55461179_55461239	0.49162	Pitx2_Otx2	ENSMUST00000108857.1|Atox1|ENSMUSG00000018585.9|ATX1 (antioxidant protein 1) homolog 1 (yeast)
mm10_v2_chr14_-_47411666_47411666	0.490957	Pitx2_Otx2	ENSMUST00000111778.3|Dlgap5|ENSMUSG00000037544.7|discs, large (Drosophila) homolog-associated protein 5
mm10_v2_chr1_-_134361933_134361999	0.490501	Pitx2_Otx2	ENSMUST00000049470.4|Tmem183a|ENSMUSG00000042305.6|transmembrane protein 183A
mm10_v2_chr10_+_31248140_31248140	0.490226	Pitx2_Otx2	ENSMUST00000050717.8|Gm5422|ENSMUSG00000039684.8|predicted pseudogene 5422
mm10_v2_chr10_-_80657071_80657098	0.490118	Pitx2_Otx2	ENSMUST00000003434.7|Btbd2|ENSMUSG00000003344.8|BTB (POZ) domain containing 2
mm10_v2_chr2_+_32095518_32095595	0.48671	Pitx2_Otx2	ENSMUST00000057423.5|Ppapdc3|ENSMUSG00000051373.5|phosphatidic acid phosphatase type 2 domain containing 3
mm10_v2_chr13_-_25270076_25270094	0.486109	Pitx2_Otx2	ENSMUST00000057866.6|Nrsn1|ENSMUSG00000048978.7|neurensin 1
mm10_v2_chr1_+_5083105_5083173	0.483214	Pitx2_Otx2	ENSMUST00000044369.7|Atp6v1h|ENSMUSG00000033793.7|ATPase, H+ transporting, lysosomal V1 subunit H
mm10_v2_chr17_-_8566869_8566869	0.483157	Pitx2_Otx2	ENSMUST00000184183.1|Gm17087|ENSMUSG00000099104.1|predicted gene 17087
mm10_v2_chr11_-_116274102_116274138	0.482257	Pitx2_Otx2	ENSMUST00000106425.3|Srp68|ENSMUSG00000020780.9|signal recognition particle 68
mm10_v2_chr7_-_16387791_16387840	0.480653	Pitx2_Otx2	ENSMUST00000094815.3|Sae1|ENSMUSG00000052833.8|SUMO1 activating enzyme subunit 1
mm10_v2_chr7_+_120635176_120635251	0.479002	Pitx2_Otx2	ENSMUST00000033176.5|Uqcrc2|ENSMUSG00000030884.5|ubiquinol cytochrome c reductase core protein 2
mm10_v2_chr18_+_75005839_75005945	0.478651	Pitx2_Otx2	ENSMUST00000040284.4|BC031181|ENSMUSG00000036299.4|cDNA sequence BC031181
mm10_v2_chr4_-_138913915_138913983	0.47801	Pitx2_Otx2	ENSMUST00000097830.3|Otud3|ENSMUSG00000041161.8|OTU domain containing 3
mm10_v2_chr9_-_36797303_36797425	0.478004	Pitx2_Otx2	ENSMUST00000115086.5|Ei24|ENSMUSG00000062762.9|etoposide induced 2.4 mRNA
mm10_v2_chr2_+_32757234_32757319	0.477703	Pitx2_Otx2	ENSMUST00000009707.7|Tor2a|ENSMUSG00000009563.10|torsin family 2, member A 	ENSMUST00000177382.1|Tor2a|ENSMUSG00000009563.10|torsin family 2, member A 	ENSMUST00000140999.1|Tor2a|ENSMUSG00000009563.10|torsin family 2, member A
mm10_v2_chr11_-_97782377_97782399	0.477386	Pitx2_Otx2	ENSMUST00000128801.1|Rpl23|ENSMUSG00000071415.6|ribosomal protein L23
mm10_v2_chr7_+_43672003_43672040	0.476912	Pitx2_Otx2	ENSMUST00000038332.8|Ctu1|ENSMUSG00000038888.8|cytosolic thiouridylase subunit 1 homolog (S. pombe)
mm10_v2_chr11_+_97029925_97029997	0.476874	Pitx2_Otx2	ENSMUST00000021249.4|Scrn2|ENSMUSG00000020877.5|secernin 2
mm10_v2_chr4_-_139352538_139352586	0.476466	Pitx2_Otx2	ENSMUST00000102503.3|Mrto4|ENSMUSG00000028741.7|MRT4, mRNA turnover 4, homolog (S. cerevisiae)
mm10_v2_chr2_+_30133746_30133806	0.474139	Pitx2_Otx2	ENSMUST00000044556.5|Tbc1d13|ENSMUSG00000039678.6|TBC1 domain family, member 13
mm10_v2_chr9_+_110243783_110243783	0.472572	Pitx2_Otx2	ENSMUST00000035058.5|Cspg5|ENSMUSG00000032482.5|chondroitin sulfate proteoglycan 5
mm10_v2_chr10_-_43540945_43541024	0.472143	Pitx2_Otx2	ENSMUST00000147196.1|1700021F05Rik|ENSMUSG00000019797.4|RIKEN cDNA 1700021F05 gene 	ENSMUST00000019932.3|1700021F05Rik|ENSMUSG00000019797.4|RIKEN cDNA 1700021F05 gene
mm10_v2_chr9_-_36797273_36797293	0.471256	Pitx2_Otx2	ENSMUST00000163192.3|Ei24|ENSMUSG00000062762.9|etoposide induced 2.4 mRNA
mm10_v2_chr16_+_4741543_4741592	0.469128	Pitx2_Otx2	ENSMUST00000120232.1|Hmox2|ENSMUSG00000004070.9|heme oxygenase (decycling) 2
mm10_v2_chr6_+_72544391_72544537	0.469117	Pitx2_Otx2	ENSMUST00000071044.6|Capg|ENSMUSG00000056737.8|capping protein (actin filament), gelsolin-like 	ENSMUST00000114072.1|Capg|ENSMUSG00000056737.8|capping protein (actin filament), gelsolin-like
mm10_v2_chr12_-_85288419_85288438	0.468735	Pitx2_Otx2	ENSMUST00000121930.1|Acyp1|ENSMUSG00000008822.9|acylphosphatase 1, erythrocyte (common) type
mm10_v2_chr3_+_133338936_133339109	0.467623	Pitx2_Otx2	ENSMUST00000150386.1|Ppa2|ENSMUSG00000028013.10|pyrophosphatase (inorganic) 2 	ENSMUST00000125858.1|Ppa2|ENSMUSG00000028013.10|pyrophosphatase (inorganic) 2
mm10_v2_chr16_+_10812915_10812915	0.467048	Pitx2_Otx2	ENSMUST00000115822.1|Gm11172|ENSMUSG00000079740.1|predicted gene 11172
mm10_v2_chr14_-_96519067_96519102	0.465893	Pitx2_Otx2	ENSMUST00000022666.7|Klhl1|ENSMUSG00000022076.9|kelch-like 1
mm10_v2_chr7_+_45155865_45155943	0.465646	Pitx2_Otx2	ENSMUST00000107811.1|Pih1d1|ENSMUSG00000003423.8|PIH1 domain containing 1
mm10_v2_chr10_-_33624587_33624769	0.465477	Pitx2_Otx2	ENSMUST00000160299.1|Clvs2|ENSMUSG00000019785.7|clavesin 2 	ENSMUST00000019920.6|Clvs2|ENSMUSG00000019785.7|clavesin 2
mm10_v2_chr10_+_81384418_81384452	0.464901	Pitx2_Otx2	ENSMUST00000072751.6|Dohh|ENSMUSG00000078440.3|deoxyhypusine hydroxylase/monooxygenase
mm10_v2_chr6_-_126849109_126849144	0.464606	Pitx2_Otx2	ENSMUST00000088194.4|Ndufa9|ENSMUSG00000000399.7|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 9
mm10_v2_chr7_-_23947237_23947237	0.464322	Pitx2_Otx2	ENSMUST00000086013.2|Gm10175|ENSMUSG00000066724.2|predicted gene 10175
mm10_v2_chr4_-_150909428_150909651	0.463632	Pitx2_Otx2	ENSMUST00000128075.1|Park7|ENSMUSG00000028964.8|Parkinson disease (autosomal recessive, early onset) 7 	ENSMUST00000105674.1|Park7|ENSMUSG00000028964.8|Parkinson disease (autosomal recessive, early onset) 7 	ENSMUST00000105673.1|Park7|ENSMUSG00000028964.8|Parkinson disease (autosomal recessive, early onset) 7
mm10_v2_chr7_-_114276107_114276125	0.463261	Pitx2_Otx2	ENSMUST00000033008.9|Psma1|ENSMUSG00000030751.11|proteasome (prosome, macropain) subunit, alpha type 1
mm10_v2_chr11_+_76945719_76945821	0.462986	Pitx2_Otx2	ENSMUST00000125145.1|Blmh|ENSMUSG00000020840.4|bleomycin hydrolase
mm10_v2_chr3_-_86142684_86142702	0.461327	Pitx2_Otx2	ENSMUST00000029722.6|Rps3a1|ENSMUSG00000028081.6|ribosomal protein S3A1
mm10_v2_chr6_-_99435345_99435368	0.461154	Pitx2_Otx2	ENSMUST00000113322.2|Foxp1|ENSMUSG00000030067.11|forkhead box P1 	ENSMUST00000176850.1|Foxp1|ENSMUSG00000030067.11|forkhead box P1 	ENSMUST00000176632.1|Foxp1|ENSMUSG00000030067.11|forkhead box P1
mm10_v2_chrX_-_136958000_136958028	0.458606	Pitx2_Otx2	ENSMUST00000069803.4|Tmsb15b2|ENSMUSG00000089996.4|thymosin beta 15b2
mm10_v2_chr15_+_81663889_81663958	0.458451	Pitx2_Otx2	ENSMUST00000023029.8|L3mbtl2|ENSMUSG00000022394.8|l(3)mbt-like 2 (Drosophila) 	ENSMUST00000174229.1|L3mbtl2|ENSMUSG00000022394.8|l(3)mbt-like 2 (Drosophila) 	ENSMUST00000172748.1|L3mbtl2|ENSMUSG00000022394.8|l(3)mbt-like 2 (Drosophila)
mm10_v2_chr15_+_84232030_84232043	0.458144	Pitx2_Otx2	ENSMUST00000023072.6|Parvb|ENSMUSG00000022438.6|parvin, beta
mm10_v2_chr1_-_153549697_153549724	0.456091	Pitx2_Otx2	ENSMUST00000041874.7|Npl|ENSMUSG00000042684.7|N-acetylneuraminate pyruvate lyase
mm10_v2_chr17_+_70929006_70929058	0.454664	Pitx2_Otx2	ENSMUST00000092011.6|Gm16519|ENSMUSG00000066983.6|predicted gene, 16519
mm10_v2_chr4_+_43384332_43384350	0.45457	Pitx2_Otx2	ENSMUST00000136360.1|Rusc2|ENSMUSG00000035969.9|RUN and SH3 domain containing 2
mm10_v2_chr17_-_32189457_32189549	0.454399	Pitx2_Otx2	ENSMUST00000087721.3|Ephx3|ENSMUSG00000037577.6|epoxide hydrolase 3 	ENSMUST00000162117.1|Ephx3|ENSMUSG00000037577.6|epoxide hydrolase 3
mm10_v2_chr3_+_55112080_55112171	0.454	Pitx2_Otx2	ENSMUST00000044116.7|Spg20|ENSMUSG00000036580.9|spastic paraplegia 20, spartin (Troyer syndrome) homolog (human) 	ENSMUST00000107971.2|Spg20|ENSMUSG00000036580.9|spastic paraplegia 20, spartin (Troyer syndrome) homolog (human) 	ENSMUST00000118118.1|Spg20|ENSMUSG00000036580.9|spastic paraplegia 20, spartin (Troyer syndrome) homolog (human)
mm10_v2_chr2_+_91054009_91054038	0.452352	Pitx2_Otx2	ENSMUST00000067663.7|Psmc3|ENSMUSG00000002102.9|proteasome (prosome, macropain) 26S subunit, ATPase 3
mm10_v2_chr6_-_71823805_71823814	0.452102	Pitx2_Otx2	ENSMUST00000065103.2|Mrpl35|ENSMUSG00000052962.2|mitochondrial ribosomal protein L35
mm10_v2_chr11_-_26593920_26593999	0.452027	Pitx2_Otx2	ENSMUST00000078362.6|Vrk2|ENSMUSG00000064090.8|vaccinia related kinase 2 	ENSMUST00000156264.1|Vrk2|ENSMUSG00000064090.8|vaccinia related kinase 2
mm10_v2_chr8_-_22398588_22398621	0.451587	Pitx2_Otx2	ENSMUST00000033871.6|Slc25a15|ENSMUSG00000031482.8|solute carrier family 25 (mitochondrial carrier ornithine transporter), member 15
mm10_v2_chr14_+_65806066_65806232	0.451279	Pitx2_Otx2	ENSMUST00000139644.1|Pbk|ENSMUSG00000022033.3|PDZ binding kinase
mm10_v2_chr5_+_115559505_115559578	0.450423	Pitx2_Otx2	ENSMUST00000156359.1|Rplp0|ENSMUSG00000067274.4|ribosomal protein, large, P0 	ENSMUST00000152976.1|Rplp0|ENSMUSG00000067274.4|ribosomal protein, large, P0
mm10_v2_chr11_-_84068357_84068367	0.448868	Pitx2_Otx2	ENSMUST00000100705.4|Dusp14|ENSMUSG00000018648.9|dual specificity phosphatase 14
mm10_v2_chr14_+_20703027_20703077	0.448542	Pitx2_Otx2	ENSMUST00000071215.3|Chchd1|ENSMUSG00000063787.3|coiled-coil-helix-coiled-coil-helix domain containing 1
mm10_v2_chr9_+_120571498_120571522	0.446874	Pitx2_Otx2	ENSMUST00000165532.1|Rpl14|ENSMUSG00000025794.8|ribosomal protein L14
mm10_v2_chr19_-_8786408_8786422	0.445824	Pitx2_Otx2	ENSMUST00000176496.1|Taf6l|ENSMUSG00000003680.9|TAF6-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor
mm10_v2_chr19_-_57197556_57197631	0.444764	Pitx2_Otx2	ENSMUST00000099294.2|Ablim1|ENSMUSG00000025085.10|actin-binding LIM protein 1
mm10_v2_chr16_-_88056176_88056176	0.441333	Pitx2_Otx2	ENSMUST00000072256.5|Grik1|ENSMUSG00000022935.8|glutamate receptor, ionotropic, kainate 1 	ENSMUST00000023652.8|Grik1|ENSMUSG00000022935.8|glutamate receptor, ionotropic, kainate 1 	ENSMUST00000114137.1|Grik1|ENSMUSG00000022935.8|glutamate receptor, ionotropic, kainate 1
mm10_v2_chr11_-_116274197_116274217	0.440195	Pitx2_Otx2	ENSMUST00000021133.9|Srp68|ENSMUSG00000020780.9|signal recognition particle 68
mm10_v2_chr2_-_30093607_30093641	0.438088	Pitx2_Otx2	ENSMUST00000081838.6|Zdhhc12|ENSMUSG00000015335.10|zinc finger, DHHC domain containing 12
mm10_v2_chr3_-_142169196_142169261	0.437673	Pitx2_Otx2	ENSMUST00000098568.1|Bmpr1b|ENSMUSG00000052430.9|bone morphogenetic protein receptor, type 1B
mm10_v2_chr7_-_126377401_126377450	0.4368	Pitx2_Otx2	ENSMUST00000119846.1|Spns1|ENSMUSG00000030741.9|spinster homolog 1 	ENSMUST00000119754.1|Spns1|ENSMUSG00000030741.9|spinster homolog 1 	ENSMUST00000032994.8|Spns1|ENSMUSG00000030741.9|spinster homolog 1
mm10_v2_chr1_+_38987806_38987827	0.436545	Pitx2_Otx2	ENSMUST00000027247.5|Pdcl3|ENSMUSG00000026078.5|phosducin-like 3
mm10_v2_chr6_-_124779686_124779742	0.435842	Pitx2_Otx2	ENSMUST00000147669.1|Lrrc23|ENSMUSG00000030125.5|leucine rich repeat containing 23 	ENSMUST00000128697.1|Lrrc23|ENSMUSG00000030125.5|leucine rich repeat containing 23 	ENSMUST00000032218.3|Lrrc23|ENSMUSG00000030125.5|leucine rich repeat containing 23 	ENSMUST00000112475.2|Lrrc23|ENSMUSG00000030125.5|leucine rich repeat containing 23
mm10_v2_chr8_+_70527724_70527766	0.434677	Pitx2_Otx2	ENSMUST00000119353.2|Fkbp8|ENSMUSG00000019428.10|FK506 binding protein 8 	ENSMUST00000075491.7|Fkbp8|ENSMUSG00000019428.10|FK506 binding protein 8
mm10_v2_chr6_+_83349446_83349496	0.434057	Pitx2_Otx2	ENSMUST00000136501.1|Bola3|ENSMUSG00000045160.8|bolA-like 3 (E. coli)
mm10_v2_chr8_+_126422478_126422514	0.433309	Pitx2_Otx2	ENSMUST00000059093.5|Coa6|ENSMUSG00000051671.6|cytochrome c oxidase assembly factor 6
mm10_v2_chr2_-_93822537_93822581	0.433033	Pitx2_Otx2	ENSMUST00000111248.1|Ext2|ENSMUSG00000027198.10|exostoses (multiple) 2 	ENSMUST00000184931.1|Ext2|ENSMUSG00000027198.10|exostoses (multiple) 2 	ENSMUST00000145838.1|Ext2|ENSMUSG00000027198.10|exostoses (multiple) 2 	ENSMUST00000028623.6|Ext2|ENSMUSG00000027198.10|exostoses (multiple) 2
mm10_v2_chr3_-_92083132_92083147	0.431763	Pitx2_Otx2	ENSMUST00000058150.6|Lor|ENSMUSG00000043165.6|loricrin
mm10_v2_chrX_+_134585644_134585698	0.431544	Pitx2_Otx2	ENSMUST00000113211.1|Rpl36a|ENSMUSG00000079435.3|ribosomal protein L36A
mm10_v2_chr15_+_39112868_39112915	0.430265	Pitx2_Otx2	ENSMUST00000022909.8|Dcaf13|ENSMUSG00000022300.8|DDB1 and CUL4 associated factor 13
mm10_v2_chr8_+_84856982_84857036	0.429509	Pitx2_Otx2	ENSMUST00000003906.6|Farsa|ENSMUSG00000003808.12|phenylalanyl-tRNA synthetase, alpha subunit 	ENSMUST00000109754.1|Farsa|ENSMUSG00000003808.12|phenylalanyl-tRNA synthetase, alpha subunit
mm10_v2_chr19_-_57197496_57197536	0.429451	Pitx2_Otx2	ENSMUST00000111544.1|Ablim1|ENSMUSG00000025085.10|actin-binding LIM protein 1
mm10_v2_chr9_+_120110349_120110418	0.428899	Pitx2_Otx2	ENSMUST00000035106.5|Slc25a38|ENSMUSG00000032519.5|solute carrier family 25, member 38
mm10_v2_chr6_-_71144338_71144356	0.428816	Pitx2_Otx2	ENSMUST00000074241.7|Thnsl2|ENSMUSG00000054474.9|threonine synthase-like 2 (bacterial) 	ENSMUST00000160918.1|Thnsl2|ENSMUSG00000054474.9|threonine synthase-like 2 (bacterial)
mm10_v2_chr14_+_54360826_54360851	0.428362	Pitx2_Otx2	ENSMUST00000000985.5|Oxa1l|ENSMUSG00000000959.5|oxidase assembly 1-like
mm10_v2_chr17_+_56673225_56673287	0.42761	Pitx2_Otx2	ENSMUST00000002445.8|Ranbp3|ENSMUSG00000002372.8|RAN binding protein 3
mm10_v2_chr4_-_108579330_108579352	0.427405	Pitx2_Otx2	ENSMUST00000079213.5|Prpf38a|ENSMUSG00000063800.5|PRP38 pre-mRNA processing factor 38 (yeast) domain containing A
mm10_v2_chr3_+_28805436_28805521	0.426827	Pitx2_Otx2	ENSMUST00000043867.5|Rpl22l1|ENSMUSG00000039221.5|ribosomal protein L22 like 1
mm10_v2_chr5_-_136198908_136198970	0.42522	Pitx2_Otx2	ENSMUST00000149151.1|Prkrip1|ENSMUSG00000039737.5|Prkr interacting protein 1 (IL11 inducible) 	ENSMUST00000151786.1|Prkrip1|ENSMUSG00000039737.5|Prkr interacting protein 1 (IL11 inducible)
mm10_v2_chr7_-_45742455_45742483	0.423976	Pitx2_Otx2	ENSMUST00000107735.3|Sult2b1|ENSMUSG00000003271.9|sulfotransferase family, cytosolic, 2B, member 1 	ENSMUST00000140127.1|Sult2b1|ENSMUSG00000003271.9|sulfotransferase family, cytosolic, 2B, member 1
mm10_v2_chrX_-_136203637_136203926	0.421158	Pitx2_Otx2	ENSMUST00000151592.1|Tceal5|ENSMUSG00000054034.4|transcription elongation factor A (SII)-like 5 	ENSMUST00000131510.1|Tceal5|ENSMUSG00000054034.4|transcription elongation factor A (SII)-like 5 	ENSMUST00000066819.4|Tceal5|ENSMUSG00000054034.4|transcription elongation factor A (SII)-like 5
mm10_v2_chrX_-_53643717_53643769	0.420335	Pitx2_Otx2	ENSMUST00000088779.3|Cxx1a|ENSMUSG00000067925.3|CAAX box 1A
mm10_v2_chr7_-_133702515_133702616	0.420202	Pitx2_Otx2	ENSMUST00000153698.1|Uros|ENSMUSG00000030979.6|uroporphyrinogen III synthase
mm10_v2_chr2_-_163472561_163472635	0.420189	Pitx2_Otx2	ENSMUST00000109418.1|Fitm2|ENSMUSG00000048486.6|fat storage-inducing transmembrane protein 2
mm10_v2_chr3_+_122924353_122924402	0.420012	Pitx2_Otx2	ENSMUST00000106429.3|1810037I17Rik|ENSMUSG00000054091.7|RIKEN cDNA 1810037I17 gene
mm10_v2_chr17_+_47688992_47689030	0.419308	Pitx2_Otx2	ENSMUST00000156118.1|Frs3|ENSMUSG00000023266.5|fibroblast growth factor receptor substrate 3
mm10_v2_chr5_+_100798627_100798770	0.417735	Pitx2_Otx2	ENSMUST00000016977.8|Mrps18c|ENSMUSG00000016833.8|mitochondrial ribosomal protein S18C 	ENSMUST00000112898.1|Mrps18c|ENSMUSG00000016833.8|mitochondrial ribosomal protein S18C 	ENSMUST00000112901.1|Mrps18c|ENSMUSG00000016833.8|mitochondrial ribosomal protein S18C
mm10_v2_chr11_-_98625661_98625661	0.417624	Pitx2_Otx2	ENSMUST00000104933.1|Gm12355|ENSMUSG00000078134.1|predicted gene 12355
mm10_v2_chr1_-_4785671_4785744	0.414292	Pitx2_Otx2	ENSMUST00000130201.1|Mrpl15|ENSMUSG00000033845.7|mitochondrial ribosomal protein L15 	ENSMUST00000156816.1|Mrpl15|ENSMUSG00000033845.7|mitochondrial ribosomal protein L15
mm10_v2_chr17_+_24896488_24896530	0.412622	Pitx2_Otx2	ENSMUST00000024978.6|Nme3|ENSMUSG00000073435.4|NME/NM23 nucleoside diphosphate kinase 3
mm10_v2_chr8_-_70506710_70506766	0.412611	Pitx2_Otx2	ENSMUST00000136913.1|2810428I15Rik|ENSMUSG00000058833.5|RIKEN cDNA 2810428I15 gene 	ENSMUST00000075175.5|2810428I15Rik|ENSMUSG00000058833.5|RIKEN cDNA 2810428I15 gene
mm10_v2_chr18_+_36365774_36365785	0.410644	Pitx2_Otx2	ENSMUST00000144158.1|Cystm1|ENSMUSG00000046727.6|cysteine-rich transmembrane module containing 1
mm10_v2_chr2_-_84727236_84727299	0.410507	Pitx2_Otx2	ENSMUST00000165219.1|Clp1|ENSMUSG00000027079.9|CLP1, cleavage and polyadenylation factor I subunit
mm10_v2_chr11_-_68927049_68927101	0.409806	Pitx2_Otx2	ENSMUST00000038932.7|Odf4|ENSMUSG00000032921.7|outer dense fiber of sperm tails 4
mm10_v2_chr9_+_64960814_64960843	0.409442	Pitx2_Otx2	ENSMUST00000170517.1|Vwa9|ENSMUSG00000034263.6|von Willebrand factor A domain containing 9
mm10_v2_chr9_+_64960892_64960937	0.408435	Pitx2_Otx2	ENSMUST00000037504.5|Vwa9|ENSMUSG00000034263.6|von Willebrand factor A domain containing 9
mm10_v2_chr7_-_66388286_66388350	0.407541	Pitx2_Otx2	ENSMUST00000015277.7|Lrrk1|ENSMUSG00000015133.10|leucine-rich repeat kinase 1
mm10_v2_chr8_-_40634750_40634775	0.406605	Pitx2_Otx2	ENSMUST00000173957.1|Mtmr7|ENSMUSG00000039431.10|myotubularin related protein 7
mm10_v2_chr6_+_42349826_42349837	0.406275	Pitx2_Otx2	ENSMUST00000070635.6|Zyx|ENSMUSG00000029860.10|zyxin
mm10_v2_chr5_+_123228190_123228301	0.406262	Pitx2_Otx2	ENSMUST00000100729.4|Psmd9|ENSMUSG00000029440.11|proteasome (prosome, macropain) 26S subunit, non-ATPase, 9
mm10_v2_chr15_+_99702278_99702312	0.405998	Pitx2_Otx2	ENSMUST00000023759.4|Smarcd1|ENSMUSG00000023018.4|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1
mm10_v2_chr7_+_28440927_28440945	0.405011	Pitx2_Otx2	ENSMUST00000078845.6|Gmfg|ENSMUSG00000060791.9|glia maturation factor, gamma
mm10_v2_chr8_+_70754679_70754751	0.403973	Pitx2_Otx2	ENSMUST00000110093.2|Rab3a|ENSMUSG00000031840.6|RAB3A, member RAS oncogene family 	ENSMUST00000143118.1|Rab3a|ENSMUSG00000031840.6|RAB3A, member RAS oncogene family 	ENSMUST00000034301.5|Rab3a|ENSMUSG00000031840.6|RAB3A, member RAS oncogene family 	ENSMUST00000110090.1|Rab3a|ENSMUSG00000031840.6|RAB3A, member RAS oncogene family
mm10_v2_chr4_-_116994374_116994413	0.403201	Pitx2_Otx2	ENSMUST00000030446.8|Urod|ENSMUSG00000028684.8|uroporphyrinogen decarboxylase
mm10_v2_chr1_-_126738167_126738230	0.402258	Pitx2_Otx2	ENSMUST00000160693.1|Nckap5|ENSMUSG00000049690.9|NCK-associated protein 5
mm10_v2_chr19_-_57197377_57197417	0.402199	Pitx2_Otx2	ENSMUST00000111546.1|Ablim1|ENSMUSG00000025085.10|actin-binding LIM protein 1
mm10_v2_chr18_-_9726670_9726670	0.402152	Pitx2_Otx2	ENSMUST00000171339.1|Gm17430|ENSMUSG00000091285.1|predicted gene, 17430
mm10_v2_chr9_+_110656494_110656544	0.401874	Pitx2_Otx2	ENSMUST00000019803.4|Ccdc12|ENSMUSG00000019659.4|coiled-coil domain containing 12
mm10_v2_chr13_-_97198351_97198362	0.400722	Pitx2_Otx2	ENSMUST00000022169.7|Hexb|ENSMUSG00000021665.7|hexosaminidase B
mm10_v2_chr7_+_29134854_29134957	0.398705	Pitx2_Otx2	ENSMUST00000161522.1|Rasgrp4|ENSMUSG00000030589.9|RAS guanyl releasing protein 4 	ENSMUST00000159975.1|Rasgrp4|ENSMUSG00000030589.9|RAS guanyl releasing protein 4 	ENSMUST00000032811.5|Rasgrp4|ENSMUSG00000030589.9|RAS guanyl releasing protein 4 	ENSMUST00000094617.4|Rasgrp4|ENSMUSG00000030589.9|RAS guanyl releasing protein 4
mm10_v2_chr6_+_42350000_42350076	0.398337	Pitx2_Otx2	ENSMUST00000164375.1|Zyx|ENSMUSG00000029860.10|zyxin
mm10_v2_chr2_+_164823001_164823040	0.397564	Pitx2_Otx2	ENSMUST00000132282.1|Zswim1|ENSMUSG00000017764.2|zinc finger SWIM-type containing 1
mm10_v2_chr5_+_121204477_121204499	0.39721	Pitx2_Otx2	ENSMUST00000031617.9|Rpl6|ENSMUSG00000029614.9|ribosomal protein L6
mm10_v2_chr7_-_45466894_45466901	0.396712	Pitx2_Otx2	ENSMUST00000033093.8|Bax|ENSMUSG00000003873.10|BCL2-associated X protein
mm10_v2_chr11_-_97782409_97782437	0.394315	Pitx2_Otx2	ENSMUST00000103146.4|Rpl23|ENSMUSG00000071415.6|ribosomal protein L23
mm10_v2_chr6_-_86684510_86684529	0.393001	Pitx2_Otx2	ENSMUST00000001186.4|Snrnp27|ENSMUSG00000001158.7|small nuclear ribonucleoprotein 27 (U4/U6.U5) 	ENSMUST00000113683.1|Snrnp27|ENSMUSG00000001158.7|small nuclear ribonucleoprotein 27 (U4/U6.U5)
mm10_v2_chr10_-_80320506_80320553	0.392051	Pitx2_Otx2	ENSMUST00000020341.8|2310011J03Rik|ENSMUSG00000020133.8|RIKEN cDNA 2310011J03 gene
mm10_v2_chr5_+_110544326_110544370	0.390772	Pitx2_Otx2	ENSMUST00000040001.7|Galnt9|ENSMUSG00000033316.8|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 9
mm10_v2_chr11_+_98753512_98753586	0.390132	Pitx2_Otx2	ENSMUST00000124072.1|Thra|ENSMUSG00000058756.7|thyroid hormone receptor alpha
mm10_v2_chr14_+_61598226_61598241	0.389313	Pitx2_Otx2	ENSMUST00000165015.1|Trim13|ENSMUSG00000035235.6|tripartite motif-containing 13
mm10_v2_chr17_-_32388885_32389116	0.387732	Pitx2_Otx2	ENSMUST00000087703.5|Wiz|ENSMUSG00000024050.9|widely-interspaced zinc finger motifs 	ENSMUST00000170603.1|Wiz|ENSMUSG00000024050.9|widely-interspaced zinc finger motifs
mm10_v2_chr2_-_33428222_33428222	0.387219	Pitx2_Otx2	ENSMUST00000091037.2|Zbtb34|ENSMUSG00000068966.4|zinc finger and BTB domain containing 34
mm10_v2_chr15_+_102460076_102460108	0.38646	Pitx2_Otx2	ENSMUST00000164688.1|Prr13|ENSMUSG00000023048.7|proline rich 13
mm10_v2_chr4_-_116994354_116994372	0.386126	Pitx2_Otx2	ENSMUST00000130273.1|Urod|ENSMUSG00000028684.8|uroporphyrinogen decarboxylase
mm10_v2_chr6_+_115544664_115544712	0.384513	Pitx2_Otx2	ENSMUST00000040234.7|Tsen2|ENSMUSG00000042389.7|tRNA splicing endonuclease 2 homolog (S. cerevisiae)
mm10_v2_chr14_-_20181773_20181790	0.383491	Pitx2_Otx2	ENSMUST00000024011.8|Kcnk5|ENSMUSG00000023243.8|potassium channel, subfamily K, member 5
mm10_v2_chr12_-_85280306_85280347	0.382787	Pitx2_Otx2	ENSMUST00000117138.2|Acyp1|ENSMUSG00000008822.9|acylphosphatase 1, erythrocyte (common) type
mm10_v2_chr18_+_36760214_36760292	0.380081	Pitx2_Otx2	ENSMUST00000049323.7|Wdr55|ENSMUSG00000042660.7|WD repeat domain 55
mm10_v2_chr8_-_107263248_107263248	0.37974	Pitx2_Otx2	ENSMUST00000080443.6|Rps18-ps3|ENSMUSG00000057657.3|ribosomal protein S18, pseudogene 3
mm10_v2_chr15_-_98918131_98918231	0.379195	Pitx2_Otx2	ENSMUST00000023736.8|Lmbr1l|ENSMUSG00000022999.8|limb region 1 like
mm10_v2_chr16_-_22265950_22266005	0.378903	Pitx2_Otx2	ENSMUST00000161286.1|Tra2b|ENSMUSG00000022858.9|transformer 2 beta homolog (Drosophila)
mm10_v2_chr1_+_171331414_171331426	0.378805	Pitx2_Otx2	ENSMUST00000097467.1|Dedd|ENSMUSG00000013973.6|death effector domain-containing
mm10_v2_chr7_+_45718058_45718111	0.378264	Pitx2_Otx2	ENSMUST00000072503.6|Rpl18|ENSMUSG00000059070.8|ribosomal protein L18
mm10_v2_chr18_+_80206775_80206881	0.377897	Pitx2_Otx2	ENSMUST00000145963.1|Txnl4a|ENSMUSG00000057130.5|thioredoxin-like 4A 	ENSMUST00000125127.1|Gm16286|ENSMUSG00000024571.8|predicted gene 16286 	ENSMUST00000025464.7|Txnl4a|ENSMUSG00000057130.5|thioredoxin-like 4A 	ENSMUST00000025463.7|Gm16286|ENSMUSG00000024571.8|predicted gene 16286
mm10_v2_chr11_-_121229293_121229322	0.377127	Pitx2_Otx2	ENSMUST00000106115.1|BC017643|ENSMUSG00000039294.8|cDNA sequence BC017643 	ENSMUST00000038709.7|BC017643|ENSMUSG00000039294.8|cDNA sequence BC017643 	ENSMUST00000147490.1|BC017643|ENSMUSG00000039294.8|cDNA sequence BC017643
mm10_v2_chr11_+_32205411_32205481	0.37672	Pitx2_Otx2	ENSMUST00000039601.3|Snrnp25|ENSMUSG00000040767.4|small nuclear ribonucleoprotein 25 (U11/U12) 	ENSMUST00000149043.1|Snrnp25|ENSMUSG00000040767.4|small nuclear ribonucleoprotein 25 (U11/U12)
mm10_v2_chr8_+_23139064_23139105	0.375879	Pitx2_Otx2	ENSMUST00000033947.8|Ank1|ENSMUSG00000031543.12|ankyrin 1, erythroid
mm10_v2_chr4_+_62559825_62559847	0.373743	Pitx2_Otx2	ENSMUST00000065870.7|Rgs3|ENSMUSG00000059810.12|regulator of G-protein signaling 3
mm10_v2_chr4_+_43441939_43441939	0.373024	Pitx2_Otx2	ENSMUST00000060864.6|Tesk1|ENSMUSG00000028458.6|testis specific protein kinase 1
mm10_v2_chr7_+_141131268_141131333	0.372337	Pitx2_Otx2	ENSMUST00000026568.8|Ptdss2|ENSMUSG00000025495.8|phosphatidylserine synthase 2
mm10_v2_chr1_+_167308649_167308670	0.37212	Pitx2_Otx2	ENSMUST00000097473.4|Tmco1|ENSMUSG00000052428.5|transmembrane and coiled-coil domains 1
mm10_v2_chr13_+_45507438_45507515	0.371243	Pitx2_Otx2	ENSMUST00000000260.6|Gmpr|ENSMUSG00000000253.6|guanosine monophosphate reductase
mm10_v2_chr11_-_98018308_98018372	0.370882	Pitx2_Otx2	ENSMUST00000107561.2|Cacnb1|ENSMUSG00000020882.11|calcium channel, voltage-dependent, beta 1 subunit
mm10_v2_chr9_-_107541816_107541865	0.370722	Pitx2_Otx2	ENSMUST00000041459.3|Cyb561d2|ENSMUSG00000037190.7|cytochrome b-561 domain containing 2
mm10_v2_chr19_-_43752924_43753001	0.370605	Pitx2_Otx2	ENSMUST00000045562.5|Cox15|ENSMUSG00000040018.9|cytochrome c oxidase assembly protein 15
mm10_v2_chr1_+_9545397_9545479	0.369771	Pitx2_Otx2	ENSMUST00000072079.7|Rrs1|ENSMUSG00000061024.7|RRS1 ribosome biogenesis regulator homolog (S. cerevisiae)
mm10_v2_chr8_+_83566671_83566815	0.368685	Pitx2_Otx2	ENSMUST00000036996.5|Ndufb7|ENSMUSG00000033938.5|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 7
mm10_v2_chr11_+_70017085_70017146	0.368548	Pitx2_Otx2	ENSMUST00000108589.2|Dlg4|ENSMUSG00000020886.10|discs, large homolog 4 (Drosophila)
mm10_v2_chr19_-_8798495_8798565	0.368426	Pitx2_Otx2	ENSMUST00000096261.3|Polr2g|ENSMUSG00000071662.3|polymerase (RNA) II (DNA directed) polypeptide G
mm10_v2_chr11_-_54956047_54956122	0.367314	Pitx2_Otx2	ENSMUST00000155316.1|Tnip1|ENSMUSG00000020400.11|TNFAIP3 interacting protein 1 	ENSMUST00000108889.3|Tnip1|ENSMUSG00000020400.11|TNFAIP3 interacting protein 1 	ENSMUST00000126703.1|Tnip1|ENSMUSG00000020400.11|TNFAIP3 interacting protein 1
mm10_v2_chr5_-_74065736_74065758	0.366467	Pitx2_Otx2	ENSMUST00000145016.1|Usp46|ENSMUSG00000054814.8|ubiquitin specific peptidase 46
mm10_v2_chr15_+_102326116_102326152	0.366366	Pitx2_Otx2	ENSMUST00000166658.1|Pfdn5|ENSMUSG00000001289.6|prefoldin 5 	ENSMUST00000062492.4|Pfdn5|ENSMUSG00000001289.6|prefoldin 5
mm10_v2_chr17_+_35861318_35861339	0.36617	Pitx2_Otx2	ENSMUST00000074259.8|Nrm|ENSMUSG00000059791.8|nurim (nuclear envelope membrane protein) 	ENSMUST00000174873.1|Nrm|ENSMUSG00000059791.8|nurim (nuclear envelope membrane protein)
mm10_v2_chr8_+_123062942_123062988	0.366114	Pitx2_Otx2	ENSMUST00000142541.1|Spg7|ENSMUSG00000000738.11|spastic paraplegia 7 homolog (human) 	ENSMUST00000125975.1|Spg7|ENSMUSG00000000738.11|spastic paraplegia 7 homolog (human)
mm10_v2_chr2_+_131210501_131210604	0.362072	Pitx2_Otx2	ENSMUST00000110206.1|Ap5s1|ENSMUSG00000068264.5|adaptor-related protein 5 complex, sigma 1 subunit
mm10_v2_chr5_-_123572976_123573031	0.360745	Pitx2_Otx2	ENSMUST00000031388.8|Vps33a|ENSMUSG00000029434.8|vacuolar protein sorting 33A (yeast)
mm10_v2_chr19_-_57197435_57197460	0.358918	Pitx2_Otx2	ENSMUST00000111550.1|Ablim1|ENSMUSG00000025085.10|actin-binding LIM protein 1
mm10_v2_chr2_+_26586607_26586689	0.356821	Pitx2_Otx2	ENSMUST00000174211.1|Egfl7|ENSMUSG00000026921.12|EGF-like domain 7 	ENSMUST00000145575.2|Egfl7|ENSMUSG00000026921.12|EGF-like domain 7 	ENSMUST00000173920.1|Egfl7|ENSMUSG00000026921.12|EGF-like domain 7
mm10_v2_chr4_+_155831272_155831351	0.354948	Pitx2_Otx2	ENSMUST00000139651.1|Aurkaip1|ENSMUSG00000065990.6|aurora kinase A interacting protein 1 	ENSMUST00000084097.5|Aurkaip1|ENSMUSG00000065990.6|aurora kinase A interacting protein 1
mm10_v2_chr19_+_36083696_36083736	0.354594	Pitx2_Otx2	ENSMUST00000025714.7|Rpp30|ENSMUSG00000024800.7|ribonuclease P/MRP 30 subunit
mm10_v2_chr2_+_29935413_29935499	0.35449	Pitx2_Otx2	ENSMUST00000019859.8|Gle1|ENSMUSG00000019715.8|GLE1 RNA export mediator (yeast)
mm10_v2_chr12_-_54862783_54862921	0.354377	Pitx2_Otx2	ENSMUST00000078124.7|Cfl2|ENSMUSG00000062929.7|cofilin 2, muscle
mm10_v2_chr6_-_88874045_88874070	0.354209	Pitx2_Otx2	ENSMUST00000038409.5|Podxl2|ENSMUSG00000033152.7|podocalyxin-like 2
mm10_v2_chr12_+_76765527_76765598	0.353796	Pitx2_Otx2	ENSMUST00000041262.7|Churc1|ENSMUSG00000090258.1|churchill domain containing 1 	ENSMUST00000126408.1|Churc1|ENSMUSG00000090258.1|churchill domain containing 1 	ENSMUST00000110399.2|Churc1|ENSMUSG00000090258.1|churchill domain containing 1 	ENSMUST00000137826.1|Fntb|ENSMUSG00000033373.10|farnesyltransferase, CAAX box, beta
mm10_v2_chr18_-_37997543_37997574	0.353664	Pitx2_Otx2	ENSMUST00000042944.7|Arap3|ENSMUSG00000024451.8|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3
mm10_v2_chr14_+_52110939_52110953	0.35353	Pitx2_Otx2	ENSMUST00000111600.4|Rpgrip1|ENSMUSG00000057132.9|retinitis pigmentosa GTPase regulator interacting protein 1
mm10_v2_chr8_+_72240315_72240346	0.353222	Pitx2_Otx2	ENSMUST00000126885.1|Ap1m1|ENSMUSG00000003033.8|adaptor-related protein complex AP-1, mu subunit 1
mm10_v2_chr1_-_119913162_119913208	0.353063	Pitx2_Otx2	ENSMUST00000037906.5|Tmem177|ENSMUSG00000036975.5|transmembrane protein 177
mm10_v2_chr8_+_71542911_71542973	0.352946	Pitx2_Otx2	ENSMUST00000034272.7|Mvb12a|ENSMUSG00000031813.7|multivesicular body subunit 12A
mm10_v2_chr11_-_54787597_54787711	0.35244	Pitx2_Otx2	ENSMUST00000153209.1|Cdc42se2|ENSMUSG00000052298.6|CDC42 small effector 2 	ENSMUST00000064104.6|Cdc42se2|ENSMUSG00000052298.6|CDC42 small effector 2
mm10_v2_chr4_-_149099802_149099876	0.352216	Pitx2_Otx2	ENSMUST00000103217.4|Pex14|ENSMUSG00000028975.10|peroxisomal biogenesis factor 14
mm10_v2_chr1_-_139377041_139377078	0.351381	Pitx2_Otx2	ENSMUST00000059825.5|Crb1|ENSMUSG00000063681.8|crumbs homolog 1 (Drosophila)
mm10_v2_chr2_+_91054054_91054114	0.350724	Pitx2_Otx2	ENSMUST00000002171.7|Psmc3|ENSMUSG00000002102.9|proteasome (prosome, macropain) 26S subunit, ATPase 3 	ENSMUST00000111441.3|Psmc3|ENSMUSG00000002102.9|proteasome (prosome, macropain) 26S subunit, ATPase 3
mm10_v2_chr7_-_34196608_34196675	0.350101	Pitx2_Otx2	ENSMUST00000148381.1|Pdcd2l|ENSMUSG00000002635.5|programmed cell death 2-like 	ENSMUST00000002710.3|Pdcd2l|ENSMUSG00000002635.5|programmed cell death 2-like
mm10_v2_chr9_+_108936648_108936715	0.348856	Pitx2_Otx2	ENSMUST00000026743.8|Uqcrc1|ENSMUSG00000025651.9|ubiquinol-cytochrome c reductase core protein 1
mm10_v2_chr7_-_81345189_81345254	0.347734	Pitx2_Otx2	ENSMUST00000080813.4|Rps17|ENSMUSG00000061787.8|ribosomal protein S17
mm10_v2_chr11_+_4902212_4902247	0.346896	Pitx2_Otx2	ENSMUST00000142543.1|Thoc5|ENSMUSG00000034274.5|THO complex 5
mm10_v2_chr2_+_101886249_101886269	0.34685	Pitx2_Otx2	ENSMUST00000028584.7|Commd9|ENSMUSG00000027163.7|COMM domain containing 9
mm10_v2_chr17_-_46440099_46440125	0.345757	Pitx2_Otx2	ENSMUST00000166852.1|Gm5093|ENSMUSG00000091742.1|predicted gene 5093
mm10_v2_chr4_-_127313980_127314039	0.345304	Pitx2_Otx2	ENSMUST00000053753.7|Gja4|ENSMUSG00000050234.7|gap junction protein, alpha 4
mm10_v2_chr8_+_85060055_85060135	0.344577	Pitx2_Otx2	ENSMUST00000095220.3|Fbxw9|ENSMUSG00000008167.8|F-box and WD-40 domain protein 9
mm10_v2_chr5_+_138116903_138117041	0.343658	Pitx2_Otx2	ENSMUST00000062350.8|Zscan21|ENSMUSG00000037017.9|zinc finger and SCAN domain containing 21 	ENSMUST00000110961.2|Zscan21|ENSMUSG00000037017.9|zinc finger and SCAN domain containing 21 	ENSMUST00000080732.3|Zscan21|ENSMUSG00000037017.9|zinc finger and SCAN domain containing 21 	ENSMUST00000110960.2|Zscan21|ENSMUSG00000037017.9|zinc finger and SCAN domain containing 21 	ENSMUST00000142185.1|Zscan21|ENSMUSG00000037017.9|zinc finger and SCAN domain containing 21 	ENSMUST00000136425.1|Zscan21|ENSMUSG00000037017.9|zinc finger and SCAN domain containing 21 	ENSMUST00000110959.1|Zscan21|ENSMUSG00000037017.9|zinc finger and SCAN domain containing 21
mm10_v2_chr3_-_153912966_153912990	0.342649	Pitx2_Otx2	ENSMUST00000089950.4|Rabggtb|ENSMUSG00000038975.8|RAB geranylgeranyl transferase, b subunit
mm10_v2_chr8_-_34108443_34108488	0.342484	Pitx2_Otx2	ENSMUST00000143411.1|Dctn6|ENSMUSG00000031516.5|dynactin 6
mm10_v2_chr8_+_124231359_124231450	0.341991	Pitx2_Otx2	ENSMUST00000034458.8|Galnt2|ENSMUSG00000089704.3|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2
mm10_v2_chr4_-_141606096_141606112	0.340312	Pitx2_Otx2	ENSMUST00000153189.1|Fblim1|ENSMUSG00000006219.6|filamin binding LIM protein 1
mm10_v2_chr5_+_149184678_149184740	0.339633	Pitx2_Otx2	ENSMUST00000139474.1|Uspl1|ENSMUSG00000041264.10|ubiquitin specific peptidase like 1 	ENSMUST00000117878.1|Uspl1|ENSMUSG00000041264.10|ubiquitin specific peptidase like 1
mm10_v2_chr4_+_41135743_41135898	0.338112	Pitx2_Otx2	ENSMUST00000040008.3|Ube2r2|ENSMUSG00000036241.3|ubiquitin-conjugating enzyme E2R 2
mm10_v2_chr6_+_58833689_58833734	0.336912	Pitx2_Otx2	ENSMUST00000041401.8|Herc3|ENSMUSG00000029804.10|hect domain and RLD 3
mm10_v2_chr10_+_20347788_20347859	0.336557	Pitx2_Otx2	ENSMUST00000169712.1|Mtfr2|ENSMUSG00000019992.7|mitochondrial fission regulator 2
mm10_v2_chr6_+_47877204_47877204	0.335222	Pitx2_Otx2	ENSMUST00000061890.7|Zfp282|ENSMUSG00000025821.9|zinc finger protein 282
mm10_v2_chr5_+_99979061_99979061	0.332134	Pitx2_Otx2	ENSMUST00000046721.1|4930524J08Rik|ENSMUSG00000035364.1|RIKEN cDNA 4930524J08 gene
mm10_v2_chr9_-_107710475_107710475	0.331567	Pitx2_Otx2	ENSMUST00000080560.3|Sema3f|ENSMUSG00000034684.7|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F
mm10_v2_chr1_+_16665189_16665264	0.331521	Pitx2_Otx2	ENSMUST00000177501.1|Tmem70|ENSMUSG00000025940.6|transmembrane protein 70 	ENSMUST00000065373.5|Tmem70|ENSMUSG00000025940.6|transmembrane protein 70
mm10_v2_chr11_+_80383279_80383304	0.331017	Pitx2_Otx2	ENSMUST00000165565.1|Zfp207|ENSMUSG00000017421.12|zinc finger protein 207 	ENSMUST00000017567.7|Zfp207|ENSMUSG00000017421.12|zinc finger protein 207
mm10_v2_chr4_-_139352298_139352313	0.327718	Pitx2_Otx2	ENSMUST00000030513.6|Mrto4|ENSMUSG00000028741.7|MRT4, mRNA turnover 4, homolog (S. cerevisiae) 	ENSMUST00000155257.1|Mrto4|ENSMUSG00000028741.7|MRT4, mRNA turnover 4, homolog (S. cerevisiae)
mm10_v2_chr5_-_145166956_145167028	0.326973	Pitx2_Otx2	ENSMUST00000161390.1|Ptcd1|ENSMUSG00000029624.10|pentatricopeptide repeat domain 1
mm10_v2_chr7_+_3617357_3617389	0.324676	Pitx2_Otx2	ENSMUST00000076657.4|Ndufa3|ENSMUSG00000035674.7|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 3 	ENSMUST00000108644.1|Ndufa3|ENSMUSG00000035674.7|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 3
mm10_v2_chr14_+_121878591_121878728	0.323832	Pitx2_Otx2	ENSMUST00000039803.5|Ubac2|ENSMUSG00000041765.5|ubiquitin associated domain containing 2
mm10_v2_chr11_-_102406783_102406955	0.320649	Pitx2_Otx2	ENSMUST00000155104.1|Slc25a39|ENSMUSG00000018677.3|solute carrier family 25, member 39 	ENSMUST00000130436.1|Slc25a39|ENSMUSG00000018677.3|solute carrier family 25, member 39
mm10_v2_chr8_-_111300222_111300241	0.319292	Pitx2_Otx2	ENSMUST00000038739.4|Rfwd3|ENSMUSG00000033596.4|ring finger and WD repeat domain 3
mm10_v2_chr7_-_34230281_34230308	0.318658	Pitx2_Otx2	ENSMUST00000038027.4|Gpi1|ENSMUSG00000036427.4|glucose phosphate isomerase 1
mm10_v2_chr13_-_54468805_54468862	0.317643	Pitx2_Otx2	ENSMUST00000026990.5|Thoc3|ENSMUSG00000025872.5|THO complex 3
mm10_v2_chr10_+_80151154_80151375	0.317494	Pitx2_Otx2	ENSMUST00000146516.1|Midn|ENSMUSG00000035621.7|midnolin 	ENSMUST00000144526.1|Midn|ENSMUSG00000035621.7|midnolin
mm10_v2_chr7_-_34168516_34168582	0.316623	Pitx2_Otx2	ENSMUST00000102746.4|Uba2|ENSMUSG00000052997.9|ubiquitin-like modifier activating enzyme 2
mm10_v2_chr1_+_185332143_185332216	0.315931	Pitx2_Otx2	ENSMUST00000027916.6|Bpnt1|ENSMUSG00000026617.9|bisphosphate 3'-nucleotidase 1 	ENSMUST00000151769.1|Bpnt1|ENSMUSG00000026617.9|bisphosphate 3'-nucleotidase 1 	ENSMUST00000110965.1|Bpnt1|ENSMUSG00000026617.9|bisphosphate 3'-nucleotidase 1
mm10_v2_chr5_+_15516489_15516489	0.314759	Pitx2_Otx2	ENSMUST00000178227.1|Gm21847|ENSMUSG00000094230.1|predicted gene, 21847
mm10_v2_chr14_+_67745229_67745269	0.31472	Pitx2_Otx2	ENSMUST00000111095.2|Gnrh1|ENSMUSG00000015812.7|gonadotropin releasing hormone 1
mm10_v2_chr19_+_23675839_23675863	0.314718	Pitx2_Otx2	ENSMUST00000056396.5|Gm6563|ENSMUSG00000051255.5|predicted pseudogene 6563
mm10_v2_chr10_-_81167896_81167923	0.314162	Pitx2_Otx2	ENSMUST00000005064.7|Pias4|ENSMUSG00000004934.7|protein inhibitor of activated STAT 4
mm10_v2_chr11_-_69579320_69579352	0.313421	Pitx2_Otx2	ENSMUST00000048139.5|Wrap53|ENSMUSG00000041346.5|WD repeat containing, antisense to Trp53
mm10_v2_chr4_-_120924950_120925032	0.313269	Pitx2_Otx2	ENSMUST00000030375.2|Exo5|ENSMUSG00000028629.3|exonuclease 5 	ENSMUST00000177880.1|Exo5|ENSMUSG00000028629.3|exonuclease 5 	ENSMUST00000156836.1|Exo5|ENSMUSG00000028629.3|exonuclease 5
mm10_v2_chr11_+_95010277_95010293	0.312865	Pitx2_Otx2	ENSMUST00000124735.1|Samd14|ENSMUSG00000047181.6|sterile alpha motif domain containing 14
mm10_v2_chr8_+_106150359_106150417	0.311153	Pitx2_Otx2	ENSMUST00000034377.6|Pla2g15|ENSMUSG00000031903.6|phospholipase A2, group XV
mm10_v2_chr16_+_32419696_32419753	0.310813	Pitx2_Otx2	ENSMUST00000014220.8|Tctex1d2|ENSMUSG00000014075.9|Tctex1 domain containing 2 	ENSMUST00000080316.7|Tctex1d2|ENSMUSG00000014075.9|Tctex1 domain containing 2
mm10_v2_chr18_+_73863672_73863713	0.310725	Pitx2_Otx2	ENSMUST00000134847.1|Mro|ENSMUSG00000064036.9|maestro
mm10_v2_chr12_+_111678094_111678140	0.310005	Pitx2_Otx2	ENSMUST00000084947.3|Trmt61a|ENSMUSG00000060950.5|tRNA methyltransferase 61A 	ENSMUST00000168338.1|Trmt61a|ENSMUSG00000060950.5|tRNA methyltransferase 61A
mm10_v2_chr10_+_81321103_81321247	0.309104	Pitx2_Otx2	ENSMUST00000050867.6|Cactin|ENSMUSG00000034889.7|cactin, spliceosome C complex subunit
mm10_v2_chr10_+_59395632_59395632	0.308909	Pitx2_Otx2	ENSMUST00000092511.4|Gm10273|ENSMUSG00000069622.4|predicted pseudogene 10273
mm10_v2_chr11_+_119913423_119913441	0.308233	Pitx2_Otx2	ENSMUST00000132197.1|Chmp6|ENSMUSG00000025371.6|charged multivesicular body protein 6
mm10_v2_chr11_+_17257558_17257688	0.308193	Pitx2_Otx2	ENSMUST00000000594.2|C1d|ENSMUSG00000000581.2|C1D nuclear receptor co-repressor 	ENSMUST00000156784.1|C1d|ENSMUSG00000000581.2|C1D nuclear receptor co-repressor
mm10_v2_chr18_-_36726730_36726745	0.308069	Pitx2_Otx2	ENSMUST00000061829.6|Cd14|ENSMUSG00000051439.6|CD14 antigen
mm10_v2_chr14_-_63177793_63177889	0.307778	Pitx2_Otx2	ENSMUST00000054963.9|Fdft1|ENSMUSG00000021273.9|farnesyl diphosphate farnesyl transferase 1
mm10_v2_chr4_+_152325831_152325876	0.306769	Pitx2_Otx2	ENSMUST00000103191.4|Rpl22|ENSMUSG00000028936.9|ribosomal protein L22 	ENSMUST00000139685.1|Rpl22|ENSMUSG00000028936.9|ribosomal protein L22
mm10_v2_chr9_+_66060169_66060273	0.306188	Pitx2_Otx2	ENSMUST00000034947.5|Ppib|ENSMUSG00000032383.6|peptidylprolyl isomerase B
mm10_v2_chr4_+_155067016_155067064	0.305794	Pitx2_Otx2	ENSMUST00000103180.3|Pex10|ENSMUSG00000029047.7|peroxisomal biogenesis factor 10
mm10_v2_chr2_-_151744142_151744205	0.30566	Pitx2_Otx2	ENSMUST00000109869.1|Psmf1|ENSMUSG00000032869.9|proteasome (prosome, macropain) inhibitor subunit 1
mm10_v2_chr2_-_129371131_129371146	0.305353	Pitx2_Otx2	ENSMUST00000028881.7|Il1b|ENSMUSG00000027398.7|interleukin 1 beta
mm10_v2_chr4_-_44066960_44067061	0.305329	Pitx2_Otx2	ENSMUST00000173234.1|Gne|ENSMUSG00000028479.12|glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase 	ENSMUST00000173274.1|Gne|ENSMUSG00000028479.12|glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase
mm10_v2_chr3_-_88455692_88455707	0.305169	Pitx2_Otx2	ENSMUST00000107531.1|Sema4a|ENSMUSG00000028064.11|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A
mm10_v2_chr1_-_33669745_33669792	0.304936	Pitx2_Otx2	ENSMUST00000027312.9|Prim2|ENSMUSG00000026134.10|DNA primase, p58 subunit
mm10_v2_chr11_+_74770908_74770920	0.303774	Pitx2_Otx2	ENSMUST00000128504.1|Mettl16|ENSMUSG00000010554.8|methyltransferase like 16
mm10_v2_chr7_+_102223021_102223076	0.302886	Pitx2_Otx2	ENSMUST00000156529.1|Pgap2|ENSMUSG00000030990.11|post-GPI attachment to proteins 2 	ENSMUST00000138479.1|Pgap2|ENSMUSG00000030990.11|post-GPI attachment to proteins 2 	ENSMUST00000126914.1|Pgap2|ENSMUSG00000030990.11|post-GPI attachment to proteins 2 	ENSMUST00000033292.7|Pgap2|ENSMUSG00000030990.11|post-GPI attachment to proteins 2 	ENSMUST00000146559.1|Pgap2|ENSMUSG00000030990.11|post-GPI attachment to proteins 2
mm10_v2_chr2_+_165992625_165992667	0.301997	Pitx2_Otx2	ENSMUST00000109252.1|Ncoa3|ENSMUSG00000027678.11|nuclear receptor coactivator 3 	ENSMUST00000088095.5|Ncoa3|ENSMUSG00000027678.11|nuclear receptor coactivator 3
mm10_v2_chr11_-_82829024_82829043	0.300153	Pitx2_Otx2	ENSMUST00000021036.6|Rffl|ENSMUSG00000020696.12|ring finger and FYVE like domain containing protein 	ENSMUST00000074515.4|Rffl|ENSMUSG00000020696.12|ring finger and FYVE like domain containing protein 	ENSMUST00000103218.2|Rffl|ENSMUSG00000020696.12|ring finger and FYVE like domain containing protein
mm10_v2_chr10_+_43901782_43901845	0.299787	Pitx2_Otx2	ENSMUST00000054418.5|Rtn4ip1|ENSMUSG00000019864.7|reticulon 4 interacting protein 1
mm10_v2_chr4_-_45489794_45489794	0.299061	Pitx2_Otx2	ENSMUST00000146236.1|Shb|ENSMUSG00000044813.9|src homology 2 domain-containing transforming protein B
mm10_v2_chr17_-_83631892_83631934	0.298821	Pitx2_Otx2	ENSMUST00000051482.1|Kcng3|ENSMUSG00000045053.1|potassium voltage-gated channel, subfamily G, member 3
mm10_v2_chr17_+_57769570_57769570	0.297269	Pitx2_Otx2	ENSMUST00000076038.5|Cntnap5c|ENSMUSG00000038048.7|contactin associated protein-like 5C
mm10_v2_chr8_-_123983120_123983152	0.297228	Pitx2_Otx2	ENSMUST00000075578.6|Abcb10|ENSMUSG00000031974.8|ATP-binding cassette, sub-family B (MDR/TAP), member 10
mm10_v2_chr4_-_129578535_129578560	0.295635	Pitx2_Otx2	ENSMUST00000052835.8|Fam167b|ENSMUSG00000050493.8|family with sequence similarity 167, member B
mm10_v2_chr10_-_81266906_81266934	0.295412	Pitx2_Otx2	ENSMUST00000046114.4|Mrpl54|ENSMUSG00000034932.4|mitochondrial ribosomal protein L54
mm10_v2_chr14_-_8172986_8173003	0.294764	Pitx2_Otx2	ENSMUST00000022268.8|Pdhb|ENSMUSG00000021748.8|pyruvate dehydrogenase (lipoamide) beta
mm10_v2_chr11_-_120617887_120617941	0.293729	Pitx2_Otx2	ENSMUST00000106188.3|Pcyt2|ENSMUSG00000025137.9|phosphate cytidylyltransferase 2, ethanolamine 	ENSMUST00000026129.9|Pcyt2|ENSMUSG00000025137.9|phosphate cytidylyltransferase 2, ethanolamine
mm10_v2_chr11_+_88204396_88204444	0.293109	Pitx2_Otx2	ENSMUST00000118784.1|Mrps23|ENSMUSG00000023723.11|mitochondrial ribosomal protein S23 	ENSMUST00000139170.1|Mrps23|ENSMUSG00000023723.11|mitochondrial ribosomal protein S23 	ENSMUST00000107915.3|Mrps23|ENSMUSG00000023723.11|mitochondrial ribosomal protein S23 	ENSMUST00000144070.1|Mrps23|ENSMUSG00000023723.11|mitochondrial ribosomal protein S23
mm10_v2_chr1_-_86582500_86582565	0.292818	Pitx2_Otx2	ENSMUST00000027444.8|Pde6d|ENSMUSG00000026239.8|phosphodiesterase 6D, cGMP-specific, rod, delta 	ENSMUST00000146220.1|Pde6d|ENSMUSG00000026239.8|phosphodiesterase 6D, cGMP-specific, rod, delta
mm10_v2_chr5_+_30853796_30853801	0.292733	Pitx2_Otx2	ENSMUST00000126284.1|Mapre3|ENSMUSG00000029166.8|microtubule-associated protein, RP/EB family, member 3
mm10_v2_chr13_-_41220395_41220412	0.291593	Pitx2_Otx2	ENSMUST00000021793.7|Elovl2|ENSMUSG00000021364.9|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 2
mm10_v2_chr3_-_121171678_121171717	0.290908	Pitx2_Otx2	ENSMUST00000170781.1|Rwdd3|ENSMUSG00000028133.11|RWD domain containing 3 	ENSMUST00000039761.5|Rwdd3|ENSMUSG00000028133.11|RWD domain containing 3 	ENSMUST00000106467.1|Rwdd3|ENSMUSG00000028133.11|RWD domain containing 3 	ENSMUST00000106466.3|Rwdd3|ENSMUSG00000028133.11|RWD domain containing 3 	ENSMUST00000164925.2|Rwdd3|ENSMUSG00000028133.11|RWD domain containing 3
mm10_v2_chr7_-_38107490_38107534	0.28962	Pitx2_Otx2	ENSMUST00000108023.3|Ccne1|ENSMUSG00000002068.10|cyclin E1
mm10_v2_chr17_+_35861343_35861486	0.28939	Pitx2_Otx2	ENSMUST00000172931.1|Nrm|ENSMUSG00000059791.8|nurim (nuclear envelope membrane protein)
mm10_v2_chr1_+_17727034_17727088	0.288826	Pitx2_Otx2	ENSMUST00000159958.1|Crispld1|ENSMUSG00000025776.7|cysteine-rich secretory protein LCCL domain containing 1 	ENSMUST00000160305.1|Crispld1|ENSMUSG00000025776.7|cysteine-rich secretory protein LCCL domain containing 1 	ENSMUST00000095075.4|Crispld1|ENSMUSG00000025776.7|cysteine-rich secretory protein LCCL domain containing 1
mm10_v2_chr12_-_85280361_85280435	0.288328	Pitx2_Otx2	ENSMUST00000065913.7|Acyp1|ENSMUSG00000008822.9|acylphosphatase 1, erythrocyte (common) type 	ENSMUST00000008966.6|Acyp1|ENSMUSG00000008822.9|acylphosphatase 1, erythrocyte (common) type
mm10_v2_chrX_+_7909542_7909542	0.287532	Pitx2_Otx2	ENSMUST00000086274.2|Gm10490|ENSMUSG00000073290.1|predicted gene 10490
mm10_v2_chr11_+_98446826_98446869	0.286644	Pitx2_Otx2	ENSMUST00000019456.4|Grb7|ENSMUSG00000019312.4|growth factor receptor bound protein 7
mm10_v2_chr7_+_126976338_126976400	0.286414	Pitx2_Otx2	ENSMUST00000032920.3|Cdipt|ENSMUSG00000030682.3|CDP-diacylglycerol--inositol 3-phosphatidyltransferase (phosphatidylinositol synthase)
mm10_v2_chr7_-_127014585_127014621	0.285786	Pitx2_Otx2	ENSMUST00000165096.2|Mvp|ENSMUSG00000030681.12|major vault protein
mm10_v2_chr17_-_25880236_25880305	0.285781	Pitx2_Otx2	ENSMUST00000176696.1|Wfikkn1|ENSMUSG00000071192.5|WAP, FS, Ig, KU, and NTR-containing protein 1 	ENSMUST00000095487.5|Wfikkn1|ENSMUSG00000071192.5|WAP, FS, Ig, KU, and NTR-containing protein 1
mm10_v2_chr5_+_117976761_117976803	0.285055	Pitx2_Otx2	ENSMUST00000035579.6|Fbxo21|ENSMUSG00000032898.6|F-box protein 21
mm10_v2_chrX_+_96456362_96456390	0.28488	Pitx2_Otx2	ENSMUST00000079322.5|Heph|ENSMUSG00000031209.8|hephaestin 	ENSMUST00000113838.1|Heph|ENSMUSG00000031209.8|hephaestin
mm10_v2_chr2_+_166793767_166793813	0.284264	Pitx2_Otx2	ENSMUST00000151826.1|Trp53rk|ENSMUSG00000042854.9|transformation related protein 53 regulating kinase
mm10_v2_chr8_+_60890410_60890483	0.282624	Pitx2_Otx2	ENSMUST00000037190.8|2700029M09Rik|ENSMUSG00000038005.8|RIKEN cDNA 2700029M09 gene
mm10_v2_chr14_-_8309770_8309795	0.28159	Pitx2_Otx2	ENSMUST00000121887.1|Fam107a|ENSMUSG00000021750.9|family with sequence similarity 107, member A 	ENSMUST00000036070.8|Fam107a|ENSMUSG00000021750.9|family with sequence similarity 107, member A 	ENSMUST00000137133.1|Fam107a|ENSMUSG00000021750.9|family with sequence similarity 107, member A
mm10_v2_chr3_-_108445183_108445211	0.280441	Pitx2_Otx2	ENSMUST00000090553.5|Sars|ENSMUSG00000068739.7|seryl-aminoacyl-tRNA synthetase 	ENSMUST00000153499.1|Sars|ENSMUSG00000068739.7|seryl-aminoacyl-tRNA synthetase
mm10_v2_chr3_-_90243073_90243143	0.280172	Pitx2_Otx2	ENSMUST00000107369.1|Creb3l4|ENSMUSG00000027938.5|cAMP responsive element binding protein 3-like 4
mm10_v2_chr4_+_156013835_156013849	0.27998	Pitx2_Otx2	ENSMUST00000030952.5|Tnfrsf4|ENSMUSG00000029075.6|tumor necrosis factor receptor superfamily, member 4
mm10_v2_chr7_-_30194150_30194162	0.278397	Pitx2_Otx2	ENSMUST00000126116.1|Capns1|ENSMUSG00000001794.6|calpain, small subunit 1
mm10_v2_chr5_-_125390176_125390222	0.278197	Pitx2_Otx2	ENSMUST00000156249.1|Ubc|ENSMUSG00000008348.9|ubiquitin C
mm10_v2_chr4_-_135987182_135987269	0.277878	Pitx2_Otx2	ENSMUST00000105851.2|Pithd1|ENSMUSG00000028669.9|PITH (C-terminal proteasome-interacting domain of thioredoxin-like) domain containing 1
mm10_v2_chr16_-_4790220_4790300	0.277403	Pitx2_Otx2	ENSMUST00000118703.1|Cdip1|ENSMUSG00000004071.6|cell death inducing Trp53 target 1
mm10_v2_chr2_+_172440556_172440630	0.27729	Pitx2_Otx2	ENSMUST00000029005.3|Rtfdc1|ENSMUSG00000027502.5|replication termination factor 2 domain containing 1
mm10_v2_chr3_-_88455735_88455788	0.276484	Pitx2_Otx2	ENSMUST00000029700.5|Sema4a|ENSMUSG00000028064.11|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A
mm10_v2_chr17_-_35895920_35896001	0.276373	Pitx2_Otx2	ENSMUST00000059740.8|2310061I04Rik|ENSMUSG00000050705.9|RIKEN cDNA 2310061I04 gene
mm10_v2_chr11_-_69681903_69682084	0.275701	Pitx2_Otx2	ENSMUST00000066760.1|Senp3|ENSMUSG00000005204.6|SUMO/sentrin specific peptidase 3
mm10_v2_chr5_-_121618865_121618938	0.274745	Pitx2_Otx2	ENSMUST00000041252.6|Acad12|ENSMUSG00000042647.7|acyl-Coenzyme A dehydrogenase family, member 12 	ENSMUST00000111776.1|Acad12|ENSMUSG00000042647.7|acyl-Coenzyme A dehydrogenase family, member 12
mm10_v2_chr13_+_41001002_41001052	0.27443	Pitx2_Otx2	ENSMUST00000046951.9|Pak1ip1|ENSMUSG00000038683.9|PAK1 interacting protein 1
mm10_v2_chr5_+_35757875_35757946	0.27423	Pitx2_Otx2	ENSMUST00000101280.3|Ablim2|ENSMUSG00000029095.11|actin-binding LIM protein 2 	ENSMUST00000054598.5|Ablim2|ENSMUSG00000029095.11|actin-binding LIM protein 2 	ENSMUST00000114205.1|Ablim2|ENSMUSG00000029095.11|actin-binding LIM protein 2 	ENSMUST00000114206.2|Ablim2|ENSMUSG00000029095.11|actin-binding LIM protein 2
mm10_v2_chr12_-_79172609_79172672	0.27407	Pitx2_Otx2	ENSMUST00000055262.6|Vti1b|ENSMUSG00000021124.7|vesicle transport through interaction with t-SNAREs 1B
mm10_v2_chr19_+_6047081_6047104	0.273103	Pitx2_Otx2	ENSMUST00000025723.8|Syvn1|ENSMUSG00000024807.11|synovial apoptosis inhibitor 1, synoviolin
mm10_v2_chr11_-_68973840_68973864	0.272907	Pitx2_Otx2	ENSMUST00000038644.4|Rangrf|ENSMUSG00000032892.8|RAN guanine nucleotide release factor
mm10_v2_chr2_+_30807826_30807999	0.272879	Pitx2_Otx2	ENSMUST00000041830.3|Ntmt1|ENSMUSG00000026857.3|N-terminal Xaa-Pro-Lys N-methyltransferase 1 	ENSMUST00000152374.1|Ntmt1|ENSMUSG00000026857.3|N-terminal Xaa-Pro-Lys N-methyltransferase 1
mm10_v2_chr11_-_51688614_51688669	0.272875	Pitx2_Otx2	ENSMUST00000007921.2|0610009B22Rik|ENSMUSG00000007777.3|RIKEN cDNA 0610009B22 gene
mm10_v2_chr9_-_50561261_50561268	0.271714	Pitx2_Otx2	ENSMUST00000034568.5|Tex12|ENSMUSG00000032065.5|testis expressed gene 12
mm10_v2_chr9_-_108567336_108567359	0.271469	Pitx2_Otx2	ENSMUST00000074208.4|Ndufaf3|ENSMUSG00000070283.3|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 3
mm10_v2_chr4_+_130913120_130913137	0.270114	Pitx2_Otx2	ENSMUST00000151698.1|Laptm5|ENSMUSG00000028581.11|lysosomal-associated protein transmembrane 5
mm10_v2_chr5_-_88676135_88676186	0.270102	Pitx2_Otx2	ENSMUST00000078945.5|Grsf1|ENSMUSG00000044221.8|G-rich RNA sequence binding factor 1
mm10_v2_chr1_+_171213969_171214007	0.269294	Pitx2_Otx2	ENSMUST00000005820.4|Nr1i3|ENSMUSG00000005677.8|nuclear receptor subfamily 1, group I, member 3 	ENSMUST00000075469.5|Nr1i3|ENSMUSG00000005677.8|nuclear receptor subfamily 1, group I, member 3 	ENSMUST00000155126.1|Nr1i3|ENSMUSG00000005677.8|nuclear receptor subfamily 1, group I, member 3
mm10_v2_chrX_-_7605374_7605517	0.268279	Pitx2_Otx2	ENSMUST00000033483.4|Ccdc22|ENSMUSG00000031143.4|coiled-coil domain containing 22
mm10_v2_chr8_-_79399513_79399532	0.267683	Pitx2_Otx2	ENSMUST00000066091.7|Smad1|ENSMUSG00000031681.8|SMAD family member 1 	ENSMUST00000109885.1|Smad1|ENSMUSG00000031681.8|SMAD family member 1 	ENSMUST00000066081.3|Smad1|ENSMUSG00000031681.8|SMAD family member 1
mm10_v2_chr7_-_84679346_84679401	0.267405	Pitx2_Otx2	ENSMUST00000069537.2|Zfand6|ENSMUSG00000030629.8|zinc finger, AN1-type domain 6 	ENSMUST00000178385.1|Zfand6|ENSMUSG00000030629.8|zinc finger, AN1-type domain 6
mm10_v2_chr8_-_22166412_22166435	0.266891	Pitx2_Otx2	ENSMUST00000033865.9|Nek3|ENSMUSG00000031478.10|NIMA (never in mitosis gene a)-related expressed kinase 3 	ENSMUST00000110730.3|Nek3|ENSMUSG00000031478.10|NIMA (never in mitosis gene a)-related expressed kinase 3
mm10_v2_chr14_+_52279132_52279188	0.266789	Pitx2_Otx2	ENSMUST00000022766.6|Tox4|ENSMUSG00000016831.11|TOX high mobility group box family member 4
mm10_v2_chr8_-_40634776_40634806	0.265796	Pitx2_Otx2	ENSMUST00000048898.10|Mtmr7|ENSMUSG00000039431.10|myotubularin related protein 7 	ENSMUST00000174205.1|Mtmr7|ENSMUSG00000039431.10|myotubularin related protein 7
mm10_v2_chr2_+_144368961_144369062	0.265016	Pitx2_Otx2	ENSMUST00000028911.8|Csrp2bp|ENSMUSG00000027425.12|cysteine and glycine-rich protein 2 binding protein 	ENSMUST00000147747.1|Csrp2bp|ENSMUSG00000027425.12|cysteine and glycine-rich protein 2 binding protein 	ENSMUST00000183618.1|Pet117|ENSMUSG00000098387.1|PET117 homolog (S. cerevisiae)
mm10_v2_chr11_+_120672992_120673009	0.264345	Pitx2_Otx2	ENSMUST00000026135.8|Aspscr1|ENSMUSG00000025142.11|alveolar soft part sarcoma chromosome region, candidate 1 (human)
mm10_v2_chr17_+_34898463_34898501	0.263346	Pitx2_Otx2	ENSMUST00000114033.2|Ehmt2|ENSMUSG00000013787.9|euchromatic histone lysine N-methyltransferase 2 	ENSMUST00000078061.6|Ehmt2|ENSMUSG00000013787.9|euchromatic histone lysine N-methyltransferase 2
mm10_v2_chr5_-_113989739_113989744	0.262619	Pitx2_Otx2	ENSMUST00000077689.7|Ssh1|ENSMUSG00000042121.10|slingshot homolog 1 (Drosophila)
mm10_v2_chr12_+_118846329_118846329	0.262607	Pitx2_Otx2	ENSMUST00000063918.2|Sp8|ENSMUSG00000048562.6|trans-acting transcription factor 8
mm10_v2_chr3_+_90104128_90104143	0.261852	Pitx2_Otx2	ENSMUST00000029548.4|Nup210l|ENSMUSG00000027939.7|nucleoporin 210-like
mm10_v2_chr11_+_6389061_6389080	0.261162	Pitx2_Otx2	ENSMUST00000109787.1|Zmiz2|ENSMUSG00000041164.9|zinc finger, MIZ-type containing 2
mm10_v2_chr4_+_127021311_127021339	0.261085	Pitx2_Otx2	ENSMUST00000030623.7|Sfpq|ENSMUSG00000028820.7|splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated)
mm10_v2_chr10_+_80053488_80053570	0.260946	Pitx2_Otx2	ENSMUST00000105372.1|Gpx4|ENSMUSG00000075706.4|glutathione peroxidase 4
mm10_v2_chr10_-_71285234_71285262	0.260789	Pitx2_Otx2	ENSMUST00000020085.6|Ube2d1|ENSMUSG00000019927.6|ubiquitin-conjugating enzyme E2D 1
mm10_v2_chr11_-_102447647_102447682	0.258727	Pitx2_Otx2	ENSMUST00000049057.4|Fam171a2|ENSMUSG00000034685.4|family with sequence similarity 171, member A2
mm10_v2_chr1_-_184883218_184883218	0.258668	Pitx2_Otx2	ENSMUST00000048308.5|C130074G19Rik|ENSMUSG00000039349.5|RIKEN cDNA C130074G19 gene
mm10_v2_chr8_-_22805596_22805654	0.258624	Pitx2_Otx2	ENSMUST00000163739.1|Ap3m2|ENSMUSG00000031539.5|adaptor-related protein complex 3, mu 2 subunit
mm10_v2_chrX_-_43167817_43167838	0.258548	Pitx2_Otx2	ENSMUST00000115058.1|Tenm1|ENSMUSG00000016150.9|teneurin transmembrane protein 1 	ENSMUST00000115059.1|Tenm1|ENSMUSG00000016150.9|teneurin transmembrane protein 1
mm10_v2_chr7_-_67759735_67759759	0.258523	Pitx2_Otx2	ENSMUST00000074233.4|Synm|ENSMUSG00000030554.9|synemin, intermediate filament protein 	ENSMUST00000051389.8|Synm|ENSMUSG00000030554.9|synemin, intermediate filament protein
mm10_v2_chr13_+_48968287_48968355	0.25846	Pitx2_Otx2	ENSMUST00000180775.1|Fam120aos|ENSMUSG00000097059.1|family with sequence similarity 120A opposite strand
mm10_v2_chr7_-_100514800_100514960	0.258433	Pitx2_Otx2	ENSMUST00000054923.7|Dnajb13|ENSMUSG00000030708.7|DnaJ (Hsp40) related, subfamily B, member 13
mm10_v2_chr7_+_12897800_12897885	0.257761	Pitx2_Otx2	ENSMUST00000055528.4|Zscan22|ENSMUSG00000054715.4|zinc finger and SCAN domain containing 22 	ENSMUST00000117189.1|Zscan22|ENSMUSG00000054715.4|zinc finger and SCAN domain containing 22 	ENSMUST00000120809.1|Zscan22|ENSMUSG00000054715.4|zinc finger and SCAN domain containing 22 	ENSMUST00000119989.1|Zscan22|ENSMUSG00000054715.4|zinc finger and SCAN domain containing 22
mm10_v2_chr2_+_80638798_80638834	0.257643	Pitx2_Otx2	ENSMUST00000028382.6|Nup35|ENSMUSG00000026999.8|nucleoporin 35 	ENSMUST00000124377.1|Nup35|ENSMUSG00000026999.8|nucleoporin 35
mm10_v2_chr11_-_120727226_120727292	0.257147	Pitx2_Otx2	ENSMUST00000106148.3|Dcxr|ENSMUSG00000039450.5|dicarbonyl L-xylulose reductase 	ENSMUST00000026144.4|Dcxr|ENSMUSG00000039450.5|dicarbonyl L-xylulose reductase
mm10_v2_chr7_-_4445595_4445631	0.257111	Pitx2_Otx2	ENSMUST00000119485.1|Rdh13|ENSMUSG00000008435.9|retinol dehydrogenase 13 (all-trans and 9-cis)
mm10_v2_chr2_-_30048827_30048891	0.254645	Pitx2_Otx2	ENSMUST00000113711.2|Wdr34|ENSMUSG00000039715.8|WD repeat domain 34
mm10_v2_chr15_-_83595111_83595162	0.254013	Pitx2_Otx2	ENSMUST00000016901.3|Ttll12|ENSMUSG00000016757.4|tubulin tyrosine ligase-like family, member 12
mm10_v2_chr7_-_99238564_99238623	0.253964	Pitx2_Otx2	ENSMUST00000064231.7|Mogat2|ENSMUSG00000052396.7|monoacylglycerol O-acyltransferase 2
mm10_v2_chr16_+_38562806_38562819	0.25363	Pitx2_Otx2	ENSMUST00000171687.1|Tmem39a|ENSMUSG00000002845.8|transmembrane protein 39a 	ENSMUST00000002924.8|Tmem39a|ENSMUSG00000002845.8|transmembrane protein 39a
mm10_v2_chr3_+_90248172_90248228	0.25343	Pitx2_Otx2	ENSMUST00000015467.8|Slc39a1|ENSMUSG00000052310.9|solute carrier family 39 (zinc transporter), member 1
mm10_v2_chr2_+_132686931_132686982	0.252799	Pitx2_Otx2	ENSMUST00000061891.4|1110034G24Rik|ENSMUSG00000044991.4|RIKEN cDNA 1110034G24 gene
mm10_v2_chr7_-_90457167_90457229	0.251791	Pitx2_Otx2	ENSMUST00000032844.5|Tmem126a|ENSMUSG00000030615.5|transmembrane protein 126A
mm10_v2_chr19_+_3282901_3283071	0.251562	Pitx2_Otx2	ENSMUST00000025745.3|Mrpl21|ENSMUSG00000024829.6|mitochondrial ribosomal protein L21 	ENSMUST00000025743.6|Mrpl21|ENSMUSG00000024829.6|mitochondrial ribosomal protein L21
mm10_v2_chr19_+_4154606_4154629	0.249659	Pitx2_Otx2	ENSMUST00000061086.8|Ptprcap|ENSMUSG00000045826.8|protein tyrosine phosphatase, receptor type, C polypeptide-associated protein
mm10_v2_chr4_+_155582476_155582495	0.249539	Pitx2_Otx2	ENSMUST00000105612.1|Nadk|ENSMUSG00000029063.10|NAD kinase
mm10_v2_chr17_-_57011271_57011326	0.248791	Pitx2_Otx2	ENSMUST00000002733.6|Gtf2f1|ENSMUSG00000002658.9|general transcription factor IIF, polypeptide 1
mm10_v2_chr5_-_25705791_25705829	0.248642	Pitx2_Otx2	ENSMUST00000030773.7|Xrcc2|ENSMUSG00000028933.7|X-ray repair complementing defective repair in Chinese hamster cells 2
mm10_v2_chr4_+_116995306_116995342	0.248436	Pitx2_Otx2	ENSMUST00000050067.9|Hectd3|ENSMUSG00000046861.9|HECT domain containing 3
mm10_v2_chr16_+_4886100_4886150	0.247893	Pitx2_Otx2	ENSMUST00000070658.8|Mgrn1|ENSMUSG00000022517.10|mahogunin, ring finger 1 	ENSMUST00000023159.8|Mgrn1|ENSMUSG00000022517.10|mahogunin, ring finger 1
mm10_v2_chr17_-_29264115_29264158	0.246064	Pitx2_Otx2	ENSMUST00000024802.8|Ppil1|ENSMUSG00000024007.8|peptidylprolyl isomerase (cyclophilin)-like 1
mm10_v2_chr7_-_19573379_19573403	0.246002	Pitx2_Otx2	ENSMUST00000119912.1|Gemin7|ENSMUSG00000044709.5|gem (nuclear organelle) associated protein 7
mm10_v2_chr7_-_45526146_45526268	0.24505	Pitx2_Otx2	ENSMUST00000167273.1|Ppp1r15a|ENSMUSG00000040435.10|protein phosphatase 1, regulatory (inhibitor) subunit 15A 	ENSMUST00000042105.8|Ppp1r15a|ENSMUSG00000040435.10|protein phosphatase 1, regulatory (inhibitor) subunit 15A
mm10_v2_chr2_+_28506095_28506095	0.244291	Pitx2_Otx2	ENSMUST00000074761.4|Gm10134|ENSMUSG00000063611.4|predicted gene 10134
mm10_v2_chr10_-_127311740_127311786	0.243916	Pitx2_Otx2	ENSMUST00000037290.5|Mars|ENSMUSG00000040354.8|methionine-tRNA synthetase 	ENSMUST00000171564.1|Mars|ENSMUSG00000040354.8|methionine-tRNA synthetase
mm10_v2_chr19_-_47536997_47537119	0.242565	Pitx2_Otx2	ENSMUST00000182808.1|Obfc1|ENSMUSG00000042694.11|oligonucleotide/oligosaccharide-binding fold containing 1 	ENSMUST00000049369.9|Obfc1|ENSMUSG00000042694.11|oligonucleotide/oligosaccharide-binding fold containing 1
mm10_v2_chr5_-_51553896_51553921	0.24225	Pitx2_Otx2	ENSMUST00000132734.1|Ppargc1a|ENSMUSG00000029167.7|peroxisome proliferative activated receptor, gamma, coactivator 1 alpha
mm10_v2_chr10_+_128238034_128238069	0.241997	Pitx2_Otx2	ENSMUST00000105245.2|Timeless|ENSMUSG00000039994.9|timeless circadian clock 1
mm10_v2_chr9_+_64179289_64179349	0.241919	Pitx2_Otx2	ENSMUST00000034965.6|Snapc5|ENSMUSG00000032398.6|small nuclear RNA activating complex, polypeptide 5
mm10_v2_chr13_+_77708683_77708740	0.241804	Pitx2_Otx2	ENSMUST00000163257.1|Fam172a|ENSMUSG00000064138.7|family with sequence similarity 172, member A 	ENSMUST00000091459.4|Fam172a|ENSMUSG00000064138.7|family with sequence similarity 172, member A 	ENSMUST00000099358.3|Fam172a|ENSMUSG00000064138.7|family with sequence similarity 172, member A
mm10_v2_chrX_+_7697131_7697187	0.240617	Pitx2_Otx2	ENSMUST00000049896.6|Gpkow|ENSMUSG00000031148.8|G patch domain and KOW motifs
mm10_v2_chr8_+_85071737_85071769	0.240592	Pitx2_Otx2	ENSMUST00000078665.6|Dhps|ENSMUSG00000060038.8|deoxyhypusine synthase
mm10_v2_chr5_-_99978914_99978966	0.240025	Pitx2_Otx2	ENSMUST00000112939.3|Hnrnpd|ENSMUSG00000000568.9|heterogeneous nuclear ribonucleoprotein D 	ENSMUST00000171786.1|Hnrnpd|ENSMUSG00000000568.9|heterogeneous nuclear ribonucleoprotein D 	ENSMUST00000072750.6|Hnrnpd|ENSMUSG00000000568.9|heterogeneous nuclear ribonucleoprotein D 	ENSMUST00000019128.8|Hnrnpd|ENSMUSG00000000568.9|heterogeneous nuclear ribonucleoprotein D 	ENSMUST00000172361.1|Hnrnpd|ENSMUSG00000000568.9|heterogeneous nuclear ribonucleoprotein D
mm10_v2_chr2_-_130629994_130630038	0.239672	Pitx2_Otx2	ENSMUST00000110262.1|Fastkd5|ENSMUSG00000079043.2|FAST kinase domains 5 	ENSMUST00000028761.4|Ubox5|ENSMUSG00000027300.9|U box domain containing 5
mm10_v2_chr14_+_27039001_27039050	0.238239	Pitx2_Otx2	ENSMUST00000035336.3|Il17rd|ENSMUSG00000040717.5|interleukin 17 receptor D
mm10_v2_chr17_+_21690766_21690766	0.237285	Pitx2_Otx2	ENSMUST00000097384.1|Gm10509|ENSMUSG00000073448.1|predicted gene 10509
mm10_v2_chr18_-_34651703_34651741	0.235254	Pitx2_Otx2	ENSMUST00000025228.5|Cdc23|ENSMUSG00000024370.10|CDC23 cell division cycle 23 	ENSMUST00000133181.1|Cdc23|ENSMUSG00000024370.10|CDC23 cell division cycle 23
mm10_v2_chr4_-_156255327_156255344	0.234864	Pitx2_Otx2	ENSMUST00000179919.1|Samd11|ENSMUSG00000096351.1|sterile alpha motif domain containing 11
mm10_v2_chr17_+_34647128_34647180	0.234353	Pitx2_Otx2	ENSMUST00000015605.8|Atf6b|ENSMUSG00000015461.9|activating transcription factor 6 beta 	ENSMUST00000182587.1|Atf6b|ENSMUSG00000015461.9|activating transcription factor 6 beta
mm10_v2_chr5_-_138263942_138263994	0.233944	Pitx2_Otx2	ENSMUST00000048421.7|BC037034|ENSMUSG00000036948.11|cDNA sequence BC037034 	ENSMUST00000164203.1|BC037034|ENSMUSG00000091964.1|cDNA sequence BC037034
mm10_v2_chr11_+_80383309_80383336	0.232994	Pitx2_Otx2	ENSMUST00000108216.1|Zfp207|ENSMUSG00000017421.12|zinc finger protein 207
mm10_v2_chr7_-_121981669_121981711	0.232971	Pitx2_Otx2	ENSMUST00000057576.7|Cog7|ENSMUSG00000034951.9|component of oligomeric golgi complex 7
mm10_v2_chr5_-_44099220_44099237	0.231914	Pitx2_Otx2	ENSMUST00000165909.1|Prom1|ENSMUSG00000029086.9|prominin 1
mm10_v2_chr8_+_109565892_109566031	0.231903	Pitx2_Otx2	ENSMUST00000034159.1|Txnl4b|ENSMUSG00000031723.2|thioredoxin-like 4B
mm10_v2_chr3_-_108445143_108445178	0.231407	Pitx2_Otx2	ENSMUST00000132467.1|Sars|ENSMUSG00000068739.7|seryl-aminoacyl-tRNA synthetase 	ENSMUST00000102625.4|Sars|ENSMUSG00000068739.7|seryl-aminoacyl-tRNA synthetase
mm10_v2_chr5_+_112326352_112326492	0.231141	Pitx2_Otx2	ENSMUST00000031288.7|Tfip11|ENSMUSG00000029345.7|tuftelin interacting protein 11 	ENSMUST00000129528.1|Tfip11|ENSMUSG00000029345.7|tuftelin interacting protein 11
mm10_v2_chr5_+_135369942_135369997	0.229009	Pitx2_Otx2	ENSMUST00000000940.8|Nsun5|ENSMUSG00000000916.9|NOL1/NOP2/Sun domain family, member 5
mm10_v2_chr16_+_81200697_81200717	0.228768	Pitx2_Otx2	ENSMUST00000067602.3|Ncam2|ENSMUSG00000022762.11|neural cell adhesion molecule 2 	ENSMUST00000037785.7|Ncam2|ENSMUSG00000022762.11|neural cell adhesion molecule 2
mm10_v2_chr11_-_4095344_4095445	0.227836	Pitx2_Otx2	ENSMUST00000004868.5|Mtfp1|ENSMUSG00000004748.5|mitochondrial fission process 1
mm10_v2_chr11_+_101253707_101253757	0.227564	Pitx2_Otx2	ENSMUST00000007533.8|Vps25|ENSMUSG00000078656.5|vacuolar protein sorting 25 (yeast) 	ENSMUST00000042477.6|Vps25|ENSMUSG00000078656.5|vacuolar protein sorting 25 (yeast) 	ENSMUST00000100414.5|Vps25|ENSMUSG00000078656.5|vacuolar protein sorting 25 (yeast) 	ENSMUST00000107280.4|Vps25|ENSMUSG00000078656.5|vacuolar protein sorting 25 (yeast) 	ENSMUST00000121331.1|Vps25|ENSMUSG00000078656.5|vacuolar protein sorting 25 (yeast)
mm10_v2_chr3_+_129878571_129878704	0.227261	Pitx2_Otx2	ENSMUST00000029629.8|Pla2g12a|ENSMUSG00000027999.9|phospholipase A2, group XIIA
mm10_v2_chr5_+_25246775_25246802	0.227168	Pitx2_Otx2	ENSMUST00000144971.1|Galnt11|ENSMUSG00000038072.8|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 11
mm10_v2_chr8_+_127447669_127447746	0.227023	Pitx2_Otx2	ENSMUST00000159511.1|Pard3|ENSMUSG00000025812.11|par-3 (partitioning defective 3) homolog (C. elegans)
mm10_v2_chr2_+_172472512_172472535	0.226421	Pitx2_Otx2	ENSMUST00000029007.2|Fam209|ENSMUSG00000027505.2|family with sequence similarity 209
mm10_v2_chr12_+_83950608_83950705	0.22599	Pitx2_Otx2	ENSMUST00000053744.7|2410016O06Rik|ENSMUSG00000046791.7|RIKEN cDNA 2410016O06 gene
mm10_v2_chr1_+_33669816_33669856	0.225563	Pitx2_Otx2	ENSMUST00000051203.5|1700001G17Rik|ENSMUSG00000044744.5|RIKEN cDNA 1700001G17 gene
mm10_v2_chr5_-_146963742_146963805	0.225364	Pitx2_Otx2	ENSMUST00000125217.1|Mtif3|ENSMUSG00000016510.5|mitochondrial translational initiation factor 3 	ENSMUST00000110564.1|Mtif3|ENSMUSG00000016510.5|mitochondrial translational initiation factor 3 	ENSMUST00000066675.3|Mtif3|ENSMUSG00000016510.5|mitochondrial translational initiation factor 3 	ENSMUST00000016654.2|Mtif3|ENSMUSG00000016510.5|mitochondrial translational initiation factor 3 	ENSMUST00000110566.1|Mtif3|ENSMUSG00000016510.5|mitochondrial translational initiation factor 3 	ENSMUST00000140526.1|Mtif3|ENSMUSG00000016510.5|mitochondrial translational initiation factor 3
mm10_v2_chr10_-_127522428_127522454	0.223377	Pitx2_Otx2	ENSMUST00000026470.4|Shmt2|ENSMUSG00000025403.4|serine hydroxymethyltransferase 2 (mitochondrial)
mm10_v2_chr19_+_6335093_6335113	0.223078	Pitx2_Otx2	ENSMUST00000078137.5|Men1|ENSMUSG00000024947.10|multiple endocrine neoplasia 1
mm10_v2_chr5_+_114786045_114786045	0.222936	Pitx2_Otx2	ENSMUST00000137519.1|Ankrd13a|ENSMUSG00000041870.10|ankyrin repeat domain 13a
mm10_v2_chr1_+_85793411_85793541	0.220853	Pitx2_Otx2	ENSMUST00000113360.1|Cab39|ENSMUSG00000036707.10|calcium binding protein 39 	ENSMUST00000126962.1|Cab39|ENSMUSG00000036707.10|calcium binding protein 39
mm10_v2_chr9_-_22130598_22130640	0.22069	Pitx2_Otx2	ENSMUST00000115315.2|Acp5|ENSMUSG00000001348.8|acid phosphatase 5, tartrate resistant
mm10_v2_chr9_-_44344159_44344228	0.220596	Pitx2_Otx2	ENSMUST00000077353.7|Hmbs|ENSMUSG00000032126.9|hydroxymethylbilane synthase
mm10_v2_chr8_-_111031712_111031751	0.220165	Pitx2_Otx2	ENSMUST00000065784.5|Ddx19b|ENSMUSG00000033658.10|DEAD (Asp-Glu-Ala-Asp) box polypeptide 19b
mm10_v2_chr8_+_114133635_114133662	0.21944	Pitx2_Otx2	ENSMUST00000147605.1|Nudt7|ENSMUSG00000031767.7|nudix (nucleoside diphosphate linked moiety X)-type motif 7 	ENSMUST00000134593.1|Nudt7|ENSMUSG00000031767.7|nudix (nucleoside diphosphate linked moiety X)-type motif 7
mm10_v2_chr7_-_144738478_144738508	0.219317	Pitx2_Otx2	ENSMUST00000121758.1|Ano1|ENSMUSG00000031075.11|anoctamin 1, calcium activated chloride channel
mm10_v2_chr3_+_79884576_79884597	0.218995	Pitx2_Otx2	ENSMUST00000145992.1|Fam198b|ENSMUSG00000027955.10|family with sequence similarity 198, member B
mm10_v2_chr7_-_30612731_30612744	0.218411	Pitx2_Otx2	ENSMUST00000006476.4|Upk1a|ENSMUSG00000006313.4|uroplakin 1A
mm10_v2_chr2_-_157571270_157571289	0.218	Pitx2_Otx2	ENSMUST00000173378.1|Blcap|ENSMUSG00000067787.4|bladder cancer associated protein homolog (human)
mm10_v2_chr11_+_78536355_78536368	0.21777	Pitx2_Otx2	ENSMUST00000128788.1|Ift20|ENSMUSG00000001105.9|intraflagellar transport 20
mm10_v2_chr9_+_107580117_107580117	0.216621	Pitx2_Otx2	ENSMUST00000093785.4|Nat6|ENSMUSG00000079334.2|N-acetyltransferase 6
mm10_v2_chr5_-_114858682_114858682	0.216584	Pitx2_Otx2	ENSMUST00000066959.4|Gm9936|ENSMUSG00000054123.4|predicted gene 9936
mm10_v2_chr4_+_100776664_100776692	0.216437	Pitx2_Otx2	ENSMUST00000030257.8|Cachd1|ENSMUSG00000028532.8|cache domain containing 1 	ENSMUST00000097955.2|Cachd1|ENSMUSG00000028532.8|cache domain containing 1
mm10_v2_chr9_+_99575776_99575829	0.215449	Pitx2_Otx2	ENSMUST00000066650.5|Dbr1|ENSMUSG00000032469.6|debranching enzyme homolog 1 (S. cerevisiae) 	ENSMUST00000148987.1|Dbr1|ENSMUSG00000032469.6|debranching enzyme homolog 1 (S. cerevisiae)
mm10_v2_chr5_+_24393640_24393676	0.215447	Pitx2_Otx2	ENSMUST00000138168.1|Abcb8|ENSMUSG00000028973.12|ATP-binding cassette, sub-family B (MDR/TAP), member 8 	ENSMUST00000115077.1|Abcb8|ENSMUSG00000028973.12|ATP-binding cassette, sub-family B (MDR/TAP), member 8
mm10_v2_chr4_+_98546710_98546739	0.21454	Pitx2_Otx2	ENSMUST00000102792.3|Inadl|ENSMUSG00000061859.10|InaD-like (Drosophila)
mm10_v2_chr7_-_140116395_140116476	0.214326	Pitx2_Otx2	ENSMUST00000026538.6|Echs1|ENSMUSG00000025465.6|enoyl Coenzyme A hydratase, short chain, 1, mitochondrial
mm10_v2_chr5_+_139253489_139253519	0.213471	Pitx2_Otx2	ENSMUST00000138508.1|Get4|ENSMUSG00000025858.6|golgi to ER traffic protein 4 homolog (S. cerevisiae) 	ENSMUST00000110878.1|Get4|ENSMUSG00000025858.6|golgi to ER traffic protein 4 homolog (S. cerevisiae)
mm10_v2_chr5_-_137533170_137533204	0.213074	Pitx2_Otx2	ENSMUST00000168746.1|Gnb2|ENSMUSG00000029713.9|guanine nucleotide binding protein (G protein), beta 2 	ENSMUST00000170293.1|Gnb2|ENSMUSG00000029713.9|guanine nucleotide binding protein (G protein), beta 2
mm10_v2_chr2_-_155930190_155930310	0.212074	Pitx2_Otx2	ENSMUST00000109636.4|Uqcc1|ENSMUSG00000005882.12|ubiquinol-cytochrome c reductase complex assembly factor 1 	ENSMUST00000109631.1|Uqcc1|ENSMUSG00000005882.12|ubiquinol-cytochrome c reductase complex assembly factor 1
mm10_v2_chr1_-_158958367_158958367	0.212004	Pitx2_Otx2	ENSMUST00000159861.2|Pappa2|ENSMUSG00000073530.5|pappalysin 2
mm10_v2_chr11_+_46235460_46235531	0.211958	Pitx2_Otx2	ENSMUST00000060185.2|Fndc9|ENSMUSG00000048721.2|fibronectin type III domain containing 9
mm10_v2_chr7_+_27452417_27452469	0.211647	Pitx2_Otx2	ENSMUST00000108357.1|Blvrb|ENSMUSG00000040466.9|biliverdin reductase B (flavin reductase (NADPH))
mm10_v2_chr19_-_8723356_8723378	0.211644	Pitx2_Otx2	ENSMUST00000170157.1|Slc3a2|ENSMUSG00000010095.7|solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2
mm10_v2_chr10_+_43221466_43221501	0.211549	Pitx2_Otx2	ENSMUST00000095725.4|Pdss2|ENSMUSG00000038240.7|prenyl (solanesyl) diphosphate synthase, subunit 2
mm10_v2_chr2_-_119208767_119208802	0.211445	Pitx2_Otx2	ENSMUST00000038439.3|Dnajc17|ENSMUSG00000034278.3|DnaJ (Hsp40) homolog, subfamily C, member 17
mm10_v2_chr15_-_76660061_76660098	0.211189	Pitx2_Otx2	ENSMUST00000081291.6|Cyhr1|ENSMUSG00000053929.10|cysteine and histidine rich 1
mm10_v2_chrX_+_36112110_36112172	0.210267	Pitx2_Otx2	ENSMUST00000033418.7|Il13ra1|ENSMUSG00000017057.9|interleukin 13 receptor, alpha 1
mm10_v2_chr7_+_45783686_45783801	0.209943	Pitx2_Otx2	ENSMUST00000118564.1|Lmtk3|ENSMUSG00000062044.7|lemur tyrosine kinase 3 	ENSMUST00000133428.1|Lmtk3|ENSMUSG00000062044.7|lemur tyrosine kinase 3
mm10_v2_chr18_+_46597698_46597765	0.209247	Pitx2_Otx2	ENSMUST00000078079.3|Eif1a|ENSMUSG00000057561.3|eukaryotic translation initiation factor 1A 	ENSMUST00000168382.1|Eif1a|ENSMUSG00000057561.3|eukaryotic translation initiation factor 1A
mm10_v2_chr9_+_107975529_107975601	0.20821	Pitx2_Otx2	ENSMUST00000035216.4|Uba7|ENSMUSG00000032596.8|ubiquitin-like modifier activating enzyme 7
mm10_v2_chr1_+_118321834_118321882	0.20805	Pitx2_Otx2	ENSMUST00000027626.6|Mki67ip|ENSMUSG00000026377.6|Mki67 (FHA domain) interacting nucleolar phosphoprotein 	ENSMUST00000112688.3|Mki67ip|ENSMUSG00000026377.6|Mki67 (FHA domain) interacting nucleolar phosphoprotein
mm10_v2_chr11_+_74770822_74770876	0.206513	Pitx2_Otx2	ENSMUST00000141755.1|Mettl16|ENSMUSG00000010554.8|methyltransferase like 16 	ENSMUST00000010698.6|Mettl16|ENSMUSG00000010554.8|methyltransferase like 16
mm10_v2_chr6_-_149188648_149188725	0.204978	Pitx2_Otx2	ENSMUST00000095319.3|Amn1|ENSMUSG00000068250.7|antagonist of mitotic exit network 1 	ENSMUST00000141346.1|Amn1|ENSMUSG00000068250.7|antagonist of mitotic exit network 1 	ENSMUST00000111535.1|Amn1|ENSMUSG00000068250.7|antagonist of mitotic exit network 1
mm10_v2_chr5_-_137611372_137611428	0.204776	Pitx2_Otx2	ENSMUST00000054564.6|Pcolce|ENSMUSG00000029718.8|procollagen C-endopeptidase enhancer protein
mm10_v2_chr5_+_124483458_124483491	0.204237	Pitx2_Otx2	ENSMUST00000111453.1|Snrnp35|ENSMUSG00000029402.8|small nuclear ribonucleoprotein 35 (U11/U12)
mm10_v2_chr4_-_149137536_149137629	0.203642	Pitx2_Otx2	ENSMUST00000176124.1|Apitd1|ENSMUSG00000073705.4|apoptosis-inducing, TAF9-like domain 1 	ENSMUST00000177408.1|Apitd1|ENSMUSG00000073705.4|apoptosis-inducing, TAF9-like domain 1 	ENSMUST00000105695.1|Apitd1|ENSMUSG00000073705.4|apoptosis-inducing, TAF9-like domain 1 	ENSMUST00000030813.3|Apitd1|ENSMUSG00000073705.4|apoptosis-inducing, TAF9-like domain 1
mm10_v2_chr1_-_171360798_171360798	0.203622	Pitx2_Otx2	ENSMUST00000061878.4|Klhdc9|ENSMUSG00000045259.4|kelch domain containing 9
mm10_v2_chr11_+_120673018_120673083	0.203267	Pitx2_Otx2	ENSMUST00000106158.2|Aspscr1|ENSMUSG00000025142.11|alveolar soft part sarcoma chromosome region, candidate 1 (human) 	ENSMUST00000103016.1|Aspscr1|ENSMUSG00000025142.11|alveolar soft part sarcoma chromosome region, candidate 1 (human) 	ENSMUST00000168714.1|Aspscr1|ENSMUSG00000025142.11|alveolar soft part sarcoma chromosome region, candidate 1 (human)
mm10_v2_chr14_-_50785518_50785518	0.202982	Pitx2_Otx2	ENSMUST00000006451.6|Ttc5|ENSMUSG00000006288.7|tetratricopeptide repeat domain 5
mm10_v2_chr8_-_34107816_34107852	0.202322	Pitx2_Otx2	ENSMUST00000118811.1|Dctn6|ENSMUSG00000031516.5|dynactin 6
mm10_v2_chr14_+_63860290_63860361	0.201886	Pitx2_Otx2	ENSMUST00000022528.4|Pinx1|ENSMUSG00000021958.4|PIN2/TERF1 interacting, telomerase inhibitor 1
mm10_v2_chr14_+_65266701_65266752	0.201667	Pitx2_Otx2	ENSMUST00000169656.1|Fbxo16|ENSMUSG00000034532.8|F-box protein 16
mm10_v2_chr4_-_43000451_43000507	0.20024	Pitx2_Otx2	ENSMUST00000030164.7|Vcp|ENSMUSG00000028452.7|valosin containing protein
mm10_v2_chr7_+_131542867_131542867	0.199533	Pitx2_Otx2	ENSMUST00000046093.5|Hmx3|ENSMUSG00000040148.5|H6 homeobox 3
mm10_v2_chr5_+_115605642_115605696	0.198921	Pitx2_Otx2	ENSMUST00000094427.3|Gcn1l1|ENSMUSG00000041638.12|GCN1 general control of amino-acid synthesis 1-like 1 (yeast)
mm10_v2_chr12_-_54695885_54695897	0.197761	Pitx2_Otx2	ENSMUST00000067272.8|Eapp|ENSMUSG00000054302.9|E2F-associated phosphoprotein
mm10_v2_chr14_+_79397772_79397772	0.196866	Pitx2_Otx2	ENSMUST00000022600.2|Mtrf1|ENSMUSG00000022022.2|mitochondrial translational release factor 1
mm10_v2_chr8_-_105938384_105938421	0.195852	Pitx2_Otx2	ENSMUST00000034369.8|Psmb10|ENSMUSG00000031897.8|proteasome (prosome, macropain) subunit, beta type 10
mm10_v2_chr1_+_86303221_86303239	0.19577	Pitx2_Otx2	ENSMUST00000113306.2|B3gnt7|ENSMUSG00000079445.2|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7
mm10_v2_chr7_-_4445637_4445662	0.195601	Pitx2_Otx2	ENSMUST00000008579.7|Rdh13|ENSMUSG00000008435.9|retinol dehydrogenase 13 (all-trans and 9-cis)
mm10_v2_chr15_+_25984359_25984373	0.195539	Pitx2_Otx2	ENSMUST00000061875.6|Zfp622|ENSMUSG00000052253.5|zinc finger protein 622
mm10_v2_chr3_-_146108047_146108130	0.194707	Pitx2_Otx2	ENSMUST00000160285.1|Wdr63|ENSMUSG00000043020.7|WD repeat domain 63
mm10_v2_chr4_-_151996113_151996258	0.19464	Pitx2_Otx2	ENSMUST00000055688.9|Phf13|ENSMUSG00000047777.9|PHD finger protein 13
mm10_v2_chr11_-_96916448_96916531	0.194504	Pitx2_Otx2	ENSMUST00000103152.4|Cdk5rap3|ENSMUSG00000018669.8|CDK5 regulatory subunit associated protein 3
mm10_v2_chr14_+_73510014_73510055	0.194483	Pitx2_Otx2	ENSMUST00000022705.5|Med4|ENSMUSG00000022109.5|mediator of RNA polymerase II transcription, subunit 4 homolog (yeast)
mm10_v2_chr17_+_33629408_33629448	0.193364	Pitx2_Otx2	ENSMUST00000165504.1|Zfp414|ENSMUSG00000073423.3|zinc finger protein 414
mm10_v2_chr7_-_141655319_141655395	0.193232	Pitx2_Otx2	ENSMUST00000062451.7|Muc6|ENSMUSG00000048191.9|mucin 6, gastric
mm10_v2_chr9_+_13765970_13766043	0.192571	Pitx2_Otx2	ENSMUST00000152532.1|Mtmr2|ENSMUSG00000031918.10|myotubularin related protein 2
mm10_v2_chr7_-_16285454_16285536	0.19175	Pitx2_Otx2	ENSMUST00000174270.1|Ccdc9|ENSMUSG00000041375.12|coiled-coil domain containing 9
mm10_v2_chr11_-_121229095_121229292	0.191646	Pitx2_Otx2	ENSMUST00000137299.1|BC017643|ENSMUSG00000039294.8|cDNA sequence BC017643 	ENSMUST00000169393.1|BC017643|ENSMUSG00000039294.8|cDNA sequence BC017643
mm10_v2_chr4_+_99929414_99929438	0.191416	Pitx2_Otx2	ENSMUST00000058351.9|Pgm2|ENSMUSG00000025791.12|phosphoglucomutase 2
mm10_v2_chr1_-_177796451_177796514	0.191391	Pitx2_Otx2	ENSMUST00000016105.8|Adss|ENSMUSG00000015961.8|adenylosuccinate synthetase, non muscle
mm10_v2_chr7_-_30445508_30445591	0.190348	Pitx2_Otx2	ENSMUST00000006828.7|Aplp1|ENSMUSG00000006651.7|amyloid beta (A4) precursor-like protein 1
mm10_v2_chr2_-_79908428_79908438	0.18983	Pitx2_Otx2	ENSMUST00000102652.3|Pde1a|ENSMUSG00000059173.13|phosphodiesterase 1A, calmodulin-dependent 	ENSMUST00000102651.3|Pde1a|ENSMUSG00000059173.13|phosphodiesterase 1A, calmodulin-dependent
mm10_v2_chr11_+_51763682_51763749	0.189789	Pitx2_Otx2	ENSMUST00000020653.5|Sar1b|ENSMUSG00000020386.5|SAR1 gene homolog B (S. cerevisiae)
mm10_v2_chr5_-_135394499_135394558	0.189426	Pitx2_Otx2	ENSMUST00000065638.4|Pom121|ENSMUSG00000053293.5|nuclear pore membrane protein 121 	ENSMUST00000111171.2|Pom121|ENSMUSG00000053293.5|nuclear pore membrane protein 121
mm10_v2_chr4_-_97183166_97183166	0.189421	Pitx2_Otx2	ENSMUST00000086672.2|Gm10192|ENSMUSG00000066990.2|predicted gene 10192
mm10_v2_chr7_+_16310412_16310455	0.187826	Pitx2_Otx2	ENSMUST00000136781.1|Bbc3|ENSMUSG00000002083.6|BCL2 binding component 3
mm10_v2_chr11_+_4218220_4218249	0.187275	Pitx2_Otx2	ENSMUST00000020699.3|Gatsl3|ENSMUSG00000020424.3|GATS protein-like 3
mm10_v2_chr7_-_100856289_100856308	0.186559	Pitx2_Otx2	ENSMUST00000139604.1|Relt|ENSMUSG00000008318.3|RELT tumor necrosis factor receptor
mm10_v2_chr8_-_84966008_84966091	0.186121	Pitx2_Otx2	ENSMUST00000109738.3|Rnaseh2a|ENSMUSG00000052926.9|ribonuclease H2, large subunit 	ENSMUST00000065049.8|Rnaseh2a|ENSMUSG00000052926.9|ribonuclease H2, large subunit 	ENSMUST00000128972.1|Rnaseh2a|ENSMUSG00000052926.9|ribonuclease H2, large subunit
mm10_v2_chr4_-_86670030_86670060	0.185485	Pitx2_Otx2	ENSMUST00000000466.6|Plin2|ENSMUSG00000028494.6|perilipin 2
mm10_v2_chr6_+_137735078_137735151	0.18488	Pitx2_Otx2	ENSMUST00000064910.6|Strap|ENSMUSG00000030224.10|serine/threonine kinase receptor associated protein
mm10_v2_chr9_+_102718424_102718490	0.184195	Pitx2_Otx2	ENSMUST00000156485.1|Amotl2|ENSMUSG00000032531.9|angiomotin-like 2 	ENSMUST00000145937.1|Amotl2|ENSMUSG00000032531.9|angiomotin-like 2 	ENSMUST00000134483.1|Amotl2|ENSMUSG00000032531.9|angiomotin-like 2
mm10_v2_chr5_+_120513102_120513143	0.183867	Pitx2_Otx2	ENSMUST00000111889.1|Slc8b1|ENSMUSG00000032754.8|solute carrier family 8 (sodium/lithium/calcium exchanger), member B1
mm10_v2_chr5_-_125389915_125390055	0.183206	Pitx2_Otx2	ENSMUST00000136312.1|Ubc|ENSMUSG00000008348.9|ubiquitin C
mm10_v2_chr16_+_14906622_14906680	0.181157	Pitx2_Otx2	ENSMUST00000090277.1|Efcab1|ENSMUSG00000068617.4|EF hand calcium binding domain 1
mm10_v2_chr14_+_30549131_30549188	0.180988	Pitx2_Otx2	ENSMUST00000022529.6|Tkt|ENSMUSG00000021957.6|transketolase
mm10_v2_chr10_+_43221505_43221600	0.178721	Pitx2_Otx2	ENSMUST00000159139.1|Pdss2|ENSMUSG00000038240.7|prenyl (solanesyl) diphosphate synthase, subunit 2
mm10_v2_chr8_-_83741169_83741326	0.178115	Pitx2_Otx2	ENSMUST00000075843.6|Cd97|ENSMUSG00000002885.8|CD97 antigen 	ENSMUST00000109802.2|Cd97|ENSMUSG00000002885.8|CD97 antigen 	ENSMUST00000002964.7|Cd97|ENSMUSG00000002885.8|CD97 antigen 	ENSMUST00000166939.1|Cd97|ENSMUSG00000002885.8|CD97 antigen
mm10_v2_chr15_-_73061204_73061234	0.177928	Pitx2_Otx2	ENSMUST00000089770.3|Trappc9|ENSMUSG00000047921.9|trafficking protein particle complex 9 	ENSMUST00000170633.1|Trappc9|ENSMUSG00000047921.9|trafficking protein particle complex 9 	ENSMUST00000168191.1|Trappc9|ENSMUSG00000047921.9|trafficking protein particle complex 9
mm10_v2_chr7_-_127020321_127020336	0.176837	Pitx2_Otx2	ENSMUST00000032918.2|Pagr1a|ENSMUSG00000030680.3|PAXIP1 associated glutamate rich protein 1A
mm10_v2_chr18_+_74216118_74216145	0.176649	Pitx2_Otx2	ENSMUST00000025444.6|Cxxc1|ENSMUSG00000024560.6|CXXC finger 1 (PHD domain)
mm10_v2_chr6_+_125192154_125192170	0.176555	Pitx2_Otx2	ENSMUST00000032485.5|Mrpl51|ENSMUSG00000030335.5|mitochondrial ribosomal protein L51
mm10_v2_chr7_+_45154644_45154734	0.17586	Pitx2_Otx2	ENSMUST00000153973.1|Pih1d1|ENSMUSG00000003423.8|PIH1 domain containing 1
mm10_v2_chr7_-_144738520_144738597	0.174988	Pitx2_Otx2	ENSMUST00000118556.2|Ano1|ENSMUSG00000031075.11|anoctamin 1, calcium activated chloride channel 	ENSMUST00000033393.8|Ano1|ENSMUSG00000031075.11|anoctamin 1, calcium activated chloride channel
mm10_v2_chr5_-_8422695_8422727	0.174763	Pitx2_Otx2	ENSMUST00000171808.1|Dbf4|ENSMUSG00000002297.9|DBF4 homolog (S. cerevisiae)
mm10_v2_chr9_-_21127346_21127346	0.174162	Pitx2_Otx2	ENSMUST00000001036.10|Tyk2|ENSMUSG00000032175.10|tyrosine kinase 2
mm10_v2_chr11_-_35834492_35834509	0.173993	Pitx2_Otx2	ENSMUST00000018992.3|Rars|ENSMUSG00000018848.4|arginyl-tRNA synthetase
mm10_v2_chr5_-_145167031_145167108	0.173528	Pitx2_Otx2	ENSMUST00000031628.9|Ptcd1|ENSMUSG00000029624.10|pentatricopeptide repeat domain 1
mm10_v2_chr6_+_113531675_113531721	0.172493	Pitx2_Otx2	ENSMUST00000036340.5|Fancd2|ENSMUSG00000034023.10|Fanconi anemia, complementation group D2 	ENSMUST00000101051.2|Fancd2|ENSMUSG00000034023.10|Fanconi anemia, complementation group D2
mm10_v2_chr13_-_74208661_74208719	0.172165	Pitx2_Otx2	ENSMUST00000035934.5|Exoc3|ENSMUSG00000034152.5|exocyst complex component 3
mm10_v2_chr9_-_64341145_64341257	0.170974	Pitx2_Otx2	ENSMUST00000120760.1|Dis3l|ENSMUSG00000032396.11|DIS3 mitotic control homolog (S. cerevisiae)-like 	ENSMUST00000168844.2|Dis3l|ENSMUSG00000032396.11|DIS3 mitotic control homolog (S. cerevisiae)-like
mm10_v2_chr13_+_58281183_58281196	0.170206	Pitx2_Otx2	ENSMUST00000180882.1|Gm26555|ENSMUSG00000097399.1|predicted gene, 26555 	ENSMUST00000180452.1|Gm26555|ENSMUSG00000097399.1|predicted gene, 26555
mm10_v2_chr5_-_110780569_110780659	0.169497	Pitx2_Otx2	ENSMUST00000149208.1|Pus1|ENSMUSG00000029507.10|pseudouridine synthase 1 	ENSMUST00000031483.8|Pus1|ENSMUSG00000029507.10|pseudouridine synthase 1 	ENSMUST00000086643.5|Pus1|ENSMUSG00000029507.10|pseudouridine synthase 1 	ENSMUST00000170468.1|Pus1|ENSMUSG00000029507.10|pseudouridine synthase 1 	ENSMUST00000031481.6|Pus1|ENSMUSG00000029507.10|pseudouridine synthase 1
mm10_v2_chr19_+_40831248_40831292	0.168387	Pitx2_Otx2	ENSMUST00000025983.6|Ccnj|ENSMUSG00000025010.7|cyclin J 	ENSMUST00000120057.1|Ccnj|ENSMUSG00000025010.7|cyclin J
mm10_v2_chr5_+_37050854_37050865	0.168238	Pitx2_Otx2	ENSMUST00000043794.4|Jakmip1|ENSMUSG00000063646.7|janus kinase and microtubule interacting protein 1
mm10_v2_chr1_-_93342734_93342803	0.168121	Pitx2_Otx2	ENSMUST00000027493.3|Pask|ENSMUSG00000026274.5|PAS domain containing serine/threonine kinase
mm10_v2_chr7_-_126583177_126583255	0.167901	Pitx2_Otx2	ENSMUST00000098036.2|Cln3|ENSMUSG00000030720.10|ceroid lipofuscinosis, neuronal 3, juvenile (Batten, Spielmeyer-Vogt disease) 	ENSMUST00000032962.4|Cln3|ENSMUSG00000030720.10|ceroid lipofuscinosis, neuronal 3, juvenile (Batten, Spielmeyer-Vogt disease)
mm10_v2_chr11_-_116581446_116581472	0.166901	Pitx2_Otx2	ENSMUST00000082152.4|Ube2o|ENSMUSG00000020802.8|ubiquitin-conjugating enzyme E2O
mm10_v2_chr6_-_142507805_142507962	0.166704	Pitx2_Otx2	ENSMUST00000134191.1|Ldhb|ENSMUSG00000030246.5|lactate dehydrogenase B 	ENSMUST00000032373.5|Ldhb|ENSMUSG00000030246.5|lactate dehydrogenase B
mm10_v2_chr4_-_155645408_155645408	0.165137	Pitx2_Otx2	ENSMUST00000115821.2|Gm10563|ENSMUSG00000073682.3|predicted gene 10563
mm10_v2_chr9_+_63602650_63602703	0.164846	Pitx2_Otx2	ENSMUST00000041551.7|Aagab|ENSMUSG00000037257.7|alpha- and gamma-adaptin binding protein
mm10_v2_chr12_-_79192248_79192293	0.164582	Pitx2_Otx2	ENSMUST00000161204.1|Rdh11|ENSMUSG00000066441.8|retinol dehydrogenase 11
mm10_v2_chr16_+_4684070_4684137	0.163686	Pitx2_Otx2	ENSMUST00000060067.5|Dnaja3|ENSMUSG00000004069.10|DnaJ (Hsp40) homolog, subfamily A, member 3 	ENSMUST00000115854.3|Dnaja3|ENSMUSG00000004069.10|DnaJ (Hsp40) homolog, subfamily A, member 3
mm10_v2_chr7_+_16781341_16781352	0.162279	Pitx2_Otx2	ENSMUST00000108496.2|Slc1a5|ENSMUSG00000001918.11|solute carrier family 1 (neutral amino acid transporter), member 5
mm10_v2_chr8_+_122376676_122376701	0.161111	Pitx2_Otx2	ENSMUST00000176629.1|Zc3h18|ENSMUSG00000017478.9|zinc finger CCCH-type containing 18
mm10_v2_chr3_-_8923796_8923918	0.161108	Pitx2_Otx2	ENSMUST00000042148.5|Mrps28|ENSMUSG00000040269.5|mitochondrial ribosomal protein S28
mm10_v2_chr17_+_80127447_80127477	0.160685	Pitx2_Otx2	ENSMUST00000039205.4|Galm|ENSMUSG00000035473.4|galactose mutarotase
mm10_v2_chr2_-_136891131_136891186	0.160606	Pitx2_Otx2	ENSMUST00000144275.1|Mkks|ENSMUSG00000027274.10|McKusick-Kaufman syndrome
mm10_v2_chrX_-_56822308_56822346	0.160351	Pitx2_Otx2	ENSMUST00000135542.1|Mtap7d3|ENSMUSG00000067878.7|MAP7 domain containing 3 	ENSMUST00000114766.1|Mtap7d3|ENSMUSG00000067878.7|MAP7 domain containing 3
mm10_v2_chr19_-_5912834_5912871	0.158437	Pitx2_Otx2	ENSMUST00000136983.1|Dpf2|ENSMUSG00000024826.8|D4, zinc and double PHD fingers family 2
mm10_v2_chr13_-_33935954_33936198	0.158354	Pitx2_Otx2	ENSMUST00000170991.1|Serpinb6a|ENSMUSG00000060147.9|serine (or cysteine) peptidase inhibitor, clade B, member 6a 	ENSMUST00000171252.1|Serpinb6a|ENSMUSG00000060147.9|serine (or cysteine) peptidase inhibitor, clade B, member 6a 	ENSMUST00000164627.1|Serpinb6a|ENSMUSG00000060147.9|serine (or cysteine) peptidase inhibitor, clade B, member 6a 	ENSMUST00000017188.7|Serpinb6a|ENSMUSG00000060147.9|serine (or cysteine) peptidase inhibitor, clade B, member 6a 	ENSMUST00000167163.1|Serpinb6a|ENSMUSG00000060147.9|serine (or cysteine) peptidase inhibitor, clade B, member 6a 	ENSMUST00000043552.10|Serpinb6a|ENSMUSG00000060147.9|serine (or cysteine) peptidase inhibitor, clade B, member 6a
mm10_v2_chr15_-_82244716_82244755	0.157861	Pitx2_Otx2	ENSMUST00000089155.4|Cenpm|ENSMUSG00000068101.4|centromere protein M 	ENSMUST00000089157.3|Cenpm|ENSMUSG00000068101.4|centromere protein M
mm10_v2_chr7_+_75701965_75702014	0.157612	Pitx2_Otx2	ENSMUST00000094307.3|Akap13|ENSMUSG00000066406.8|A kinase (PRKA) anchor protein 13
mm10_v2_chr11_+_4186789_4186865	0.157365	Pitx2_Otx2	ENSMUST00000041042.6|Tbc1d10a|ENSMUSG00000034412.7|TBC1 domain family, member 10a 	ENSMUST00000180088.1|Tbc1d10a|ENSMUSG00000034412.7|TBC1 domain family, member 10a
mm10_v2_chrX_+_101376359_101376378	0.156798	Pitx2_Otx2	ENSMUST00000119080.1|Gjb1|ENSMUSG00000047797.8|gap junction protein, beta 1
mm10_v2_chr2_+_119208975_119209029	0.155469	Pitx2_Otx2	ENSMUST00000102519.4|Zfyve19|ENSMUSG00000068580.5|zinc finger, FYVE domain containing 19
mm10_v2_chr19_-_4121536_4121581	0.155353	Pitx2_Otx2	ENSMUST00000025767.7|Aip|ENSMUSG00000024847.8|aryl-hydrocarbon receptor-interacting protein
mm10_v2_chr5_+_38260372_38260386	0.154824	Pitx2_Otx2	ENSMUST00000119047.1|Tmem128|ENSMUSG00000067365.4|transmembrane protein 128
mm10_v2_chr4_+_148558422_148558469	0.154367	Pitx2_Otx2	ENSMUST00000017408.7|Exosc10|ENSMUSG00000017264.10|exosome component 10 	ENSMUST00000076022.6|Exosc10|ENSMUSG00000017264.10|exosome component 10
mm10_v2_chr8_+_83715239_83715288	0.154185	Pitx2_Otx2	ENSMUST00000172396.1|Ddx39|ENSMUSG00000005481.11|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39
mm10_v2_chr3_+_19957037_19957073	0.153963	Pitx2_Otx2	ENSMUST00000091309.5|Cp|ENSMUSG00000003617.10|ceruloplasmin 	ENSMUST00000108329.1|Cp|ENSMUSG00000003617.10|ceruloplasmin 	ENSMUST00000003714.6|Cp|ENSMUSG00000003617.10|ceruloplasmin
mm10_v2_chr19_+_6334979_6335070	0.153958	Pitx2_Otx2	ENSMUST00000113504.3|Men1|ENSMUSG00000024947.10|multiple endocrine neoplasia 1 	ENSMUST00000113502.3|Men1|ENSMUSG00000024947.10|multiple endocrine neoplasia 1 	ENSMUST00000079327.5|Men1|ENSMUSG00000024947.10|multiple endocrine neoplasia 1 	ENSMUST00000056391.8|Men1|ENSMUSG00000024947.10|multiple endocrine neoplasia 1 	ENSMUST00000113501.1|Men1|ENSMUSG00000024947.10|multiple endocrine neoplasia 1 	ENSMUST00000113500.1|Men1|ENSMUSG00000024947.10|multiple endocrine neoplasia 1 	ENSMUST00000166909.1|Men1|ENSMUSG00000024947.10|multiple endocrine neoplasia 1
mm10_v2_chr9_+_107542209_107542258	0.15369	Pitx2_Otx2	ENSMUST00000010201.3|Nprl2|ENSMUSG00000010057.3|nitrogen permease regulator-like 2
mm10_v2_chr11_-_40695203_40695223	0.152677	Pitx2_Otx2	ENSMUST00000101347.3|Mat2b|ENSMUSG00000042032.7|methionine adenosyltransferase II, beta
mm10_v2_chr8_+_70718534_70718549	0.152611	Pitx2_Otx2	ENSMUST00000179347.1|Gm3336|ENSMUSG00000095026.1|predicted gene 3336
mm10_v2_chr17_+_56770258_56770305	0.151707	Pitx2_Otx2	ENSMUST00000168666.2|Prr22|ENSMUSG00000090273.2|proline rich 22
mm10_v2_chr9_-_20815048_20815069	0.149526	Pitx2_Otx2	ENSMUST00000004201.7|Col5a3|ENSMUSG00000004098.7|collagen, type V, alpha 3
mm10_v2_chr17_+_25727726_25727797	0.149405	Pitx2_Otx2	ENSMUST00000047273.1|Rpusd1|ENSMUSG00000041199.2|RNA pseudouridylate synthase domain containing 1
mm10_v2_chr18_-_24530203_24530245	0.149288	Pitx2_Otx2	ENSMUST00000046206.3|Rprd1a|ENSMUSG00000040446.3|regulation of nuclear pre-mRNA domain containing 1A
mm10_v2_chr7_-_19573343_19573377	0.148361	Pitx2_Otx2	ENSMUST00000051364.3|Gemin7|ENSMUSG00000044709.5|gem (nuclear organelle) associated protein 7
mm10_v2_chr17_-_53539411_53539459	0.147096	Pitx2_Otx2	ENSMUST00000056198.3|Pp2d1|ENSMUSG00000044957.3|protein phosphatase 2C-like domain containing 1
mm10_v2_chr7_-_27553138_27553249	0.146452	Pitx2_Otx2	ENSMUST00000127240.1|Pld3|ENSMUSG00000003363.9|phospholipase D family, member 3 	ENSMUST00000117095.1|Pld3|ENSMUSG00000003363.9|phospholipase D family, member 3 	ENSMUST00000117611.1|Pld3|ENSMUSG00000003363.9|phospholipase D family, member 3
mm10_v2_chr5_-_116024475_116024508	0.146415	Pitx2_Otx2	ENSMUST00000111999.1|Prkab1|ENSMUSG00000029513.8|protein kinase, AMP-activated, beta 1 non-catalytic subunit
mm10_v2_chr16_+_38562821_38562861	0.145446	Pitx2_Otx2	ENSMUST00000163948.1|Tmem39a|ENSMUSG00000002845.8|transmembrane protein 39a
mm10_v2_chr4_-_118489755_118489777	0.143222	Pitx2_Otx2	ENSMUST00000184261.1|Tie1|ENSMUSG00000033191.8|tyrosine kinase with immunoglobulin-like and EGF-like domains 1
mm10_v2_chr19_+_8735808_8735864	0.141365	Pitx2_Otx2	ENSMUST00000049424.9|Wdr74|ENSMUSG00000042729.9|WD repeat domain 74
mm10_v2_chr17_+_35089229_35089307	0.14033	Pitx2_Otx2	ENSMUST00000007251.7|Abhd16a|ENSMUSG00000007036.9|abhydrolase domain containing 16A
mm10_v2_chr8_+_70539675_70539710	0.139242	Pitx2_Otx2	ENSMUST00000093454.6|Ell|ENSMUSG00000070002.6|elongation factor RNA polymerase II
mm10_v2_chr16_+_96145391_96145448	0.139206	Pitx2_Otx2	ENSMUST00000023913.8|Wrb|ENSMUSG00000023147.9|tryptophan rich basic protein 	ENSMUST00000135448.1|Wrb|ENSMUSG00000023147.9|tryptophan rich basic protein
mm10_v2_chr15_+_76380492_76380553	0.13826	Pitx2_Otx2	ENSMUST00000096385.4|Mroh1|ENSMUSG00000022558.9|maestro heat-like repeat family member 1 	ENSMUST00000160728.1|Mroh1|ENSMUSG00000022558.9|maestro heat-like repeat family member 1 	ENSMUST00000162319.1|Mroh1|ENSMUSG00000022558.9|maestro heat-like repeat family member 1
mm10_v2_chr2_+_76675265_76675287	0.137698	Pitx2_Otx2	ENSMUST00000111920.1|Plekha3|ENSMUSG00000002733.8|pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3
mm10_v2_chr4_-_140246751_140246793	0.136824	Pitx2_Otx2	ENSMUST00000039331.8|Igsf21|ENSMUSG00000040972.8|immunoglobulin superfamily, member 21
mm10_v2_chr11_+_60454587_60454657	0.136322	Pitx2_Otx2	ENSMUST00000018568.3|Drg2|ENSMUSG00000020537.3|developmentally regulated GTP binding protein 2
mm10_v2_chr17_+_56005672_56005712	0.134918	Pitx2_Otx2	ENSMUST00000133998.1|Mpnd|ENSMUSG00000003199.10|MPN domain containing
mm10_v2_chr15_+_59315030_59315087	0.134607	Pitx2_Otx2	ENSMUST00000022977.7|Sqle|ENSMUSG00000022351.8|squalene epoxidase
mm10_v2_chr19_-_7295394_7295468	0.134284	Pitx2_Otx2	ENSMUST00000025921.8|Mark2|ENSMUSG00000024969.9|MAP/microtubule affinity-regulating kinase 2
mm10_v2_chr7_-_4524229_4524355	0.132237	Pitx2_Otx2	ENSMUST00000154913.1|Tnni3|ENSMUSG00000035458.8|troponin I, cardiac 3
mm10_v2_chr14_-_20702991_20703034	0.13194	Pitx2_Otx2	ENSMUST00000180987.1|6230400D17Rik|ENSMUSG00000097577.1|RIKEN cDNA 6230400D17 gene
mm10_v2_chrX_-_7967817_7967910	0.13156	Pitx2_Otx2	ENSMUST00000033502.7|Gata1|ENSMUSG00000031162.8|GATA binding protein 1
mm10_v2_chr5_-_8422582_8422693	0.131053	Pitx2_Otx2	ENSMUST00000168500.1|Dbf4|ENSMUSG00000002297.9|DBF4 homolog (S. cerevisiae) 	ENSMUST00000002368.9|Dbf4|ENSMUSG00000002297.9|DBF4 homolog (S. cerevisiae)
mm10_v2_chr11_-_100527896_100528000	0.130818	Pitx2_Otx2	ENSMUST00000107389.1|Acly|ENSMUSG00000020917.11|ATP citrate lyase 	ENSMUST00000007131.9|Acly|ENSMUSG00000020917.11|ATP citrate lyase
mm10_v2_chr7_-_44257378_44257378	0.130365	Pitx2_Otx2	ENSMUST00000107945.1|Acpt|ENSMUSG00000012777.8|acid phosphatase, testicular 	ENSMUST00000118216.1|Acpt|ENSMUSG00000012777.8|acid phosphatase, testicular
mm10_v2_chr6_-_120357342_120357400	0.13008	Pitx2_Otx2	ENSMUST00000163827.1|Ccdc77|ENSMUSG00000030177.8|coiled-coil domain containing 77
mm10_v2_chr4_+_130107556_130107606	0.129135	Pitx2_Otx2	ENSMUST00000030563.5|Pef1|ENSMUSG00000028779.10|penta-EF hand domain containing 1
mm10_v2_chr8_+_13785615_13785661	0.128812	Pitx2_Otx2	ENSMUST00000043767.7|Upf3a|ENSMUSG00000038398.7|UPF3 regulator of nonsense transcripts homolog A (yeast)
mm10_v2_chrX_-_53269786_53269858	0.128744	Pitx2_Otx2	ENSMUST00000114841.1|Fam122b|ENSMUSG00000036022.9|family with sequence similarity 122, member B 	ENSMUST00000071023.5|Fam122b|ENSMUSG00000036022.9|family with sequence similarity 122, member B
mm10_v2_chr10_-_71238274_71238288	0.128383	Pitx2_Otx2	ENSMUST00000092430.4|Tfam|ENSMUSG00000003923.8|transcription factor A, mitochondrial 	ENSMUST00000105432.3|Tfam|ENSMUSG00000003923.8|transcription factor A, mitochondrial
mm10_v2_chr7_+_64502090_64502155	0.128286	Pitx2_Otx2	ENSMUST00000137732.1|Apba2|ENSMUSG00000030519.8|amyloid beta (A4) precursor protein-binding, family A, member 2
mm10_v2_chrX_+_9885622_9885622	0.127348	Pitx2_Otx2	ENSMUST00000067529.2|Sytl5|ENSMUSG00000054453.5|synaptotagmin-like 5 	ENSMUST00000086165.3|Sytl5|ENSMUSG00000054453.5|synaptotagmin-like 5
mm10_v2_chr11_-_3976778_3976778	0.125706	Pitx2_Otx2	ENSMUST00000042344.1|4930556J24Rik|ENSMUSG00000034493.1|RIKEN cDNA 4930556J24 gene
mm10_v2_chr9_-_67043832_67043843	0.125535	Pitx2_Otx2	ENSMUST00000113686.1|Tpm1|ENSMUSG00000032366.9|tropomyosin 1, alpha
mm10_v2_chr3_+_32515295_32515295	0.125482	Pitx2_Otx2	ENSMUST00000029203.7|Zfp639|ENSMUSG00000027667.8|zinc finger protein 639
mm10_v2_chr9_-_45955226_45955250	0.125467	Pitx2_Otx2	ENSMUST00000038488.9|Sidt2|ENSMUSG00000034908.9|SID1 transmembrane family, member 2
mm10_v2_chr2_-_6130117_6130211	0.125173	Pitx2_Otx2	ENSMUST00000126551.1|Proser2|ENSMUSG00000045319.7|proline and serine rich 2 	ENSMUST00000054254.5|Proser2|ENSMUSG00000045319.7|proline and serine rich 2 	ENSMUST00000114942.2|Proser2|ENSMUSG00000045319.7|proline and serine rich 2
mm10_v2_chr11_-_107189325_107189381	0.124828	Pitx2_Otx2	ENSMUST00000018577.7|Nol11|ENSMUSG00000018433.8|nucleolar protein 11 	ENSMUST00000106757.1|Nol11|ENSMUSG00000018433.8|nucleolar protein 11
mm10_v2_chr15_+_99392948_99393022	0.124437	Pitx2_Otx2	ENSMUST00000161250.1|Tmbim6|ENSMUSG00000023010.8|transmembrane BAX inhibitor motif containing 6 	ENSMUST00000160635.1|Tmbim6|ENSMUSG00000023010.8|transmembrane BAX inhibitor motif containing 6 	ENSMUST00000161778.1|Tmbim6|ENSMUSG00000023010.8|transmembrane BAX inhibitor motif containing 6
mm10_v2_chr7_-_100964371_100964395	0.124152	Pitx2_Otx2	ENSMUST00000060174.4|P2ry6|ENSMUSG00000048779.4|pyrimidinergic receptor P2Y, G-protein coupled, 6
mm10_v2_chr18_+_32240300_32240342	0.124074	Pitx2_Otx2	ENSMUST00000025241.6|Ercc3|ENSMUSG00000024382.7|excision repair cross-complementing rodent repair deficiency, complementation group 3
mm10_v2_chr15_-_83464570_83464591	0.124029	Pitx2_Otx2	ENSMUST00000056177.6|Pacsin2|ENSMUSG00000016664.8|protein kinase C and casein kinase substrate in neurons 2
mm10_v2_chr17_+_34647187_34647216	0.123694	Pitx2_Otx2	ENSMUST00000173984.1|Atf6b|ENSMUSG00000015461.9|activating transcription factor 6 beta
mm10_v2_chr9_-_98601642_98601679	0.12355	Pitx2_Otx2	ENSMUST00000035034.8|Mrps22|ENSMUSG00000032459.8|mitochondrial ribosomal protein S22
mm10_v2_chr3_+_129881149_129881188	0.123133	Pitx2_Otx2	ENSMUST00000061165.7|Pla2g12a|ENSMUSG00000027999.9|phospholipase A2, group XIIA
mm10_v2_chr18_+_24603952_24603972	0.122427	Pitx2_Otx2	ENSMUST00000025120.6|Elp2|ENSMUSG00000024271.7|elongator acetyltransferase complex subunit 2
mm10_v2_chr10_+_81070035_81070121	0.121084	Pitx2_Otx2	ENSMUST00000005057.6|Thop1|ENSMUSG00000004929.6|thimet oligopeptidase 1
mm10_v2_chr16_+_4726357_4726370	0.120473	Pitx2_Otx2	ENSMUST00000154117.1|Hmox2|ENSMUSG00000004070.9|heme oxygenase (decycling) 2 	ENSMUST00000004172.8|Hmox2|ENSMUSG00000004070.9|heme oxygenase (decycling) 2
mm10_v2_chr8_+_31111816_31111891	0.118818	Pitx2_Otx2	ENSMUST00000046941.7|Rnf122|ENSMUSG00000039328.9|ring finger protein 122
mm10_v2_chr7_+_16309577_16309641	0.118644	Pitx2_Otx2	ENSMUST00000002152.6|Bbc3|ENSMUSG00000002083.6|BCL2 binding component 3
mm10_v2_chr15_-_83350151_83350262	0.118173	Pitx2_Otx2	ENSMUST00000067215.7|Arfgap3|ENSMUSG00000054277.7|ADP-ribosylation factor GTPase activating protein 3
mm10_v2_chr2_-_103797617_103797662	0.116556	Pitx2_Otx2	ENSMUST00000028607.6|Caprin1|ENSMUSG00000027184.8|cell cycle associated protein 1
mm10_v2_chr5_+_143758293_143758363	0.116026	Pitx2_Otx2	ENSMUST00000180951.1|D130017N08Rik|ENSMUSG00000097287.1|RIKEN cDNA D130017N08 gene
mm10_v2_chr13_-_107414742_107414767	0.116009	Pitx2_Otx2	ENSMUST00000061241.6|Apoo-ps|ENSMUSG00000049233.6|apolipoprotein O, pseudogene
mm10_v2_chr8_+_122376609_122376652	0.115215	Pitx2_Otx2	ENSMUST00000017622.5|Zc3h18|ENSMUSG00000017478.9|zinc finger CCCH-type containing 18 	ENSMUST00000093073.5|Zc3h18|ENSMUSG00000017478.9|zinc finger CCCH-type containing 18 	ENSMUST00000176699.1|Zc3h18|ENSMUSG00000017478.9|zinc finger CCCH-type containing 18
mm10_v2_chr15_+_10981747_10981765	0.115024	Pitx2_Otx2	ENSMUST00000070877.5|Amacr|ENSMUSG00000022244.6|alpha-methylacyl-CoA racemase
mm10_v2_chr5_-_138272733_138272754	0.114577	Pitx2_Otx2	ENSMUST00000161665.1|Gal3st4|ENSMUSG00000075593.4|galactose-3-O-sulfotransferase 4 	ENSMUST00000100530.1|Gal3st4|ENSMUSG00000075593.4|galactose-3-O-sulfotransferase 4
mm10_v2_chr3_+_108571699_108571699	0.114529	Pitx2_Otx2	ENSMUST00000143054.1|Taf13|ENSMUSG00000048100.7|TAF13 RNA polymerase II, TATA box binding protein (TBP)-associated factor
mm10_v2_chr9_+_20888175_20888239	0.114239	Pitx2_Otx2	ENSMUST00000004203.5|Ppan|ENSMUSG00000004100.5|peter pan homolog (Drosophila)
mm10_v2_chr4_+_132308668_132308693	0.113781	Pitx2_Otx2	ENSMUST00000137343.1|Snhg12|ENSMUSG00000086290.2|small nucleolar RNA host gene 12 	ENSMUST00000144705.1|Snhg12|ENSMUSG00000086290.2|small nucleolar RNA host gene 12 	ENSMUST00000153474.2|Snhg12|ENSMUSG00000086290.2|small nucleolar RNA host gene 12 	ENSMUST00000126380.2|Snhg12|ENSMUSG00000086290.2|small nucleolar RNA host gene 12
mm10_v2_chr11_+_69966896_69966918	0.113202	Pitx2_Otx2	ENSMUST00000151515.1|Cldn7|ENSMUSG00000018569.6|claudin 7
mm10_v2_chr12_-_59061425_59061477	0.112068	Pitx2_Otx2	ENSMUST00000021380.8|Trappc6b|ENSMUSG00000020993.8|trafficking protein particle complex 6B
mm10_v2_chr9_-_110101010_110101087	0.110983	Pitx2_Otx2	ENSMUST00000062368.6|Dhx30|ENSMUSG00000032480.11|DEAH (Asp-Glu-Ala-His) box polypeptide 30
mm10_v2_chr2_-_155582656_155582668	0.109807	Pitx2_Otx2	ENSMUST00000126322.1|Gss|ENSMUSG00000027610.11|glutathione synthetase
mm10_v2_chr17_-_25727364_25727426	0.109516	Pitx2_Otx2	ENSMUST00000170070.1|Chtf18|ENSMUSG00000019214.7|CTF18, chromosome transmission fidelity factor 18 	ENSMUST00000048054.7|Chtf18|ENSMUSG00000019214.7|CTF18, chromosome transmission fidelity factor 18
mm10_v2_chr11_+_53324674_53324704	0.109484	Pitx2_Otx2	ENSMUST00000018383.3|Zcchc10|ENSMUSG00000018239.3|zinc finger, CCHC domain containing 10
mm10_v2_chr2_-_25627960_25628030	0.108905	Pitx2_Otx2	ENSMUST00000028307.8|Fcna|ENSMUSG00000026938.10|ficolin A
mm10_v2_chrX_+_74424632_74424671	0.1085	Pitx2_Otx2	ENSMUST00000114129.2|Ikbkg|ENSMUSG00000004221.10|inhibitor of kappaB kinase gamma 	ENSMUST00000132749.1|Ikbkg|ENSMUSG00000004221.10|inhibitor of kappaB kinase gamma
mm10_v2_chr14_+_47472547_47472625	0.107546	Pitx2_Otx2	ENSMUST00000168833.1|Fbxo34|ENSMUSG00000037536.7|F-box protein 34 	ENSMUST00000163324.1|Fbxo34|ENSMUSG00000037536.7|F-box protein 34 	ENSMUST00000043112.7|Fbxo34|ENSMUSG00000037536.7|F-box protein 34
mm10_v2_chr4_-_141790891_141790931	0.105654	Pitx2_Otx2	ENSMUST00000038014.4|Dnajc16|ENSMUSG00000040697.4|DnaJ (Hsp40) homolog, subfamily C, member 16 	ENSMUST00000153880.1|Dnajc16|ENSMUSG00000040697.4|DnaJ (Hsp40) homolog, subfamily C, member 16
mm10_v2_chr11_+_4160348_4160404	0.105382	Pitx2_Otx2	ENSMUST00000002198.3|Sf3a1|ENSMUSG00000002129.5|splicing factor 3a, subunit 1
mm10_v2_chr7_-_133782721_133782762	0.104917	Pitx2_Otx2	ENSMUST00000063669.1|Dhx32|ENSMUSG00000030986.6|DEAH (Asp-Glu-Ala-His) box polypeptide 32
mm10_v2_chr19_+_40831296_40831313	0.103833	Pitx2_Otx2	ENSMUST00000119316.1|Ccnj|ENSMUSG00000025010.7|cyclin J
mm10_v2_chr2_-_12419456_12419474	0.103529	Pitx2_Otx2	ENSMUST00000154899.1|Fam188a|ENSMUSG00000026767.6|family with sequence similarity 188, member A 	ENSMUST00000028105.6|Fam188a|ENSMUSG00000026767.6|family with sequence similarity 188, member A
mm10_v2_chr9_+_110419750_110419809	0.103092	Pitx2_Otx2	ENSMUST00000035061.6|Ngp|ENSMUSG00000032484.6|neutrophilic granule protein
mm10_v2_chr2_-_132247623_132247654	0.101895	Pitx2_Otx2	ENSMUST00000110164.1|Tmem230|ENSMUSG00000027341.4|transmembrane protein 230
mm10_v2_chr7_-_99353104_99353230	0.100482	Pitx2_Otx2	ENSMUST00000169437.1|Serpinh1|ENSMUSG00000070436.5|serine (or cysteine) peptidase inhibitor, clade H, member 1 	ENSMUST00000094154.4|Serpinh1|ENSMUSG00000070436.5|serine (or cysteine) peptidase inhibitor, clade H, member 1
mm10_v2_chr1_-_185329331_185329401	0.100433	Pitx2_Otx2	ENSMUST00000027921.4|Iars2|ENSMUSG00000026618.5|isoleucine-tRNA synthetase 2, mitochondrial 	ENSMUST00000110975.1|Iars2|ENSMUSG00000026618.5|isoleucine-tRNA synthetase 2, mitochondrial 	ENSMUST00000110974.3|Iars2|ENSMUSG00000026618.5|isoleucine-tRNA synthetase 2, mitochondrial
mm10_v2_chr8_+_36489191_36489191	0.100296	Pitx2_Otx2	ENSMUST00000171777.1|6430573F11Rik|ENSMUSG00000039620.10|RIKEN cDNA 6430573F11 gene
mm10_v2_chr1_+_134037490_134037530	0.0995695	Pitx2_Otx2	ENSMUST00000162779.1|Fmod|ENSMUSG00000041559.7|fibromodulin
mm10_v2_chr18_+_31804057_31804120	0.0982918	Pitx2_Otx2	ENSMUST00000025264.6|Wdr33|ENSMUSG00000024400.9|WD repeat domain 33 	ENSMUST00000082319.7|Wdr33|ENSMUSG00000024400.9|WD repeat domain 33
mm10_v2_chrX_-_71492592_71492658	0.097264	Pitx2_Otx2	ENSMUST00000080035.4|Cd99l2|ENSMUSG00000035776.8|CD99 antigen-like 2
mm10_v2_chrX_+_134756563_134756647	0.096896	Pitx2_Otx2	ENSMUST00000081834.3|Armcx3|ENSMUSG00000049047.5|armadillo repeat containing, X-linked 3 	ENSMUST00000086880.4|Armcx3|ENSMUSG00000049047.5|armadillo repeat containing, X-linked 3 	ENSMUST00000086884.4|Armcx3|ENSMUSG00000049047.5|armadillo repeat containing, X-linked 3
mm10_v2_chr6_+_114643094_114643105	0.0963695	Pitx2_Otx2	ENSMUST00000032457.10|Atg7|ENSMUSG00000030314.10|autophagy related 7
mm10_v2_chr5_+_124483128_124483158	0.0955674	Pitx2_Otx2	ENSMUST00000031349.8|Snrnp35|ENSMUSG00000029402.8|small nuclear ribonucleoprotein 35 (U11/U12)
mm10_v2_chr1_-_195131536_195131588	0.0954547	Pitx2_Otx2	ENSMUST00000075451.6|Cr1l|ENSMUSG00000016481.10|complement component (3b/4b) receptor 1-like
mm10_v2_chr7_+_17087934_17087961	0.0953243	Pitx2_Otx2	ENSMUST00000152671.1|Psg16|ENSMUSG00000066760.6|pregnancy specific glycoprotein 16
mm10_v2_chr7_+_27553244_27553302	0.0946836	Pitx2_Otx2	ENSMUST00000067386.7|2310022A10Rik|ENSMUSG00000049643.9|RIKEN cDNA 2310022A10 gene
mm10_v2_chr9_+_37208291_37208360	0.0940156	Pitx2_Otx2	ENSMUST00000034632.8|Tmem218|ENSMUSG00000032121.8|transmembrane protein 218
mm10_v2_chr17_+_25823626_25823637	0.0939866	Pitx2_Otx2	ENSMUST00000026833.5|Wdr24|ENSMUSG00000025737.5|WD repeat domain 24
mm10_v2_chr18_-_38250157_38250212	0.0937949	Pitx2_Otx2	ENSMUST00000181871.1|1700086O06Rik|ENSMUSG00000097080.1|RIKEN cDNA 1700086O06 gene
mm10_v2_chr19_+_5689131_5689131	0.0929087	Pitx2_Otx2	ENSMUST00000004156.8|Map3k11|ENSMUSG00000004054.8|mitogen-activated protein kinase kinase kinase 11
mm10_v2_chr11_+_120721543_120721573	0.0922847	Pitx2_Otx2	ENSMUST00000142229.1|Rac3|ENSMUSG00000018012.5|RAS-related C3 botulinum substrate 3
mm10_v2_chr16_-_13668122_13668181	0.0919955	Pitx2_Otx2	ENSMUST00000058884.8|Parn|ENSMUSG00000022685.8|poly(A)-specific ribonuclease (deadenylation nuclease)
mm10_v2_chr5_+_124483165_124483202	0.09164	Pitx2_Otx2	ENSMUST00000136567.1|Snrnp35|ENSMUSG00000029402.8|small nuclear ribonucleoprotein 35 (U11/U12)
mm10_v2_chr6_-_72362382_72362432	0.0913196	Pitx2_Otx2	ENSMUST00000114095.1|Rnf181|ENSMUSG00000055850.6|ring finger protein 181 	ENSMUST00000069595.6|Rnf181|ENSMUSG00000055850.6|ring finger protein 181 	ENSMUST00000069580.5|Rnf181|ENSMUSG00000055850.6|ring finger protein 181
mm10_v2_chr8_-_109608623_109608673	0.090844	Pitx2_Otx2	ENSMUST00000123605.1|Dhodh|ENSMUSG00000031730.11|dihydroorotate dehydrogenase 	ENSMUST00000143900.1|Dhodh|ENSMUSG00000031730.11|dihydroorotate dehydrogenase 	ENSMUST00000069058.8|Dhodh|ENSMUSG00000031730.11|dihydroorotate dehydrogenase 	ENSMUST00000128350.1|Dhodh|ENSMUSG00000031730.11|dihydroorotate dehydrogenase
mm10_v2_chr2_-_165368723_165368729	0.0906513	Pitx2_Otx2	ENSMUST00000141140.1|Zfp663|ENSMUSG00000056824.9|zinc finger protein 663 	ENSMUST00000103085.1|Zfp663|ENSMUSG00000056824.9|zinc finger protein 663
mm10_v2_chr19_+_43752996_43753137	0.0902908	Pitx2_Otx2	ENSMUST00000026199.7|Cutc|ENSMUSG00000025193.8|cutC copper transporter homolog (E.coli) 	ENSMUST00000112047.3|Cutc|ENSMUSG00000025193.8|cutC copper transporter homolog (E.coli) 	ENSMUST00000153295.1|Cutc|ENSMUSG00000025193.8|cutC copper transporter homolog (E.coli)
mm10_v2_chr10_+_75935573_75935573	0.0899806	Pitx2_Otx2	ENSMUST00000058906.6|Chchd10|ENSMUSG00000049422.6|coiled-coil-helix-coiled-coil-helix domain containing 10
mm10_v2_chr7_+_64501949_64502048	0.0892012	Pitx2_Otx2	ENSMUST00000138829.1|Apba2|ENSMUSG00000030519.8|amyloid beta (A4) precursor protein-binding, family A, member 2
mm10_v2_chr17_-_28622419_28622473	0.0891889	Pitx2_Otx2	ENSMUST00000114767.1|Srpk1|ENSMUSG00000004865.9|serine/arginine-rich protein specific kinase 1
mm10_v2_chr10_+_79704478_79704496	0.0890415	Pitx2_Otx2	ENSMUST00000179781.1|Bsg|ENSMUSG00000023175.9|basigin
mm10_v2_chr17_-_28622479_28622521	0.0884449	Pitx2_Otx2	ENSMUST00000130643.1|Srpk1|ENSMUSG00000004865.9|serine/arginine-rich protein specific kinase 1
mm10_v2_chr7_-_43489967_43490075	0.0883477	Pitx2_Otx2	ENSMUST00000107974.1|Iglon5|ENSMUSG00000013367.4|IgLON family member 5
mm10_v2_chr11_-_78751656_78751729	0.0882198	Pitx2_Otx2	ENSMUST00000059468.4|Fam58b|ENSMUSG00000049489.4|family with sequence similarity 58, member B
mm10_v2_chr7_+_128744870_128745020	0.0874272	Pitx2_Otx2	ENSMUST00000042942.8|Sec23ip|ENSMUSG00000055319.7|Sec23 interacting protein
mm10_v2_chr6_+_114643106_114643169	0.0872703	Pitx2_Otx2	ENSMUST00000169310.3|Atg7|ENSMUSG00000030314.10|autophagy related 7 	ENSMUST00000182169.1|Atg7|ENSMUSG00000030314.10|autophagy related 7 	ENSMUST00000183165.1|Atg7|ENSMUSG00000030314.10|autophagy related 7 	ENSMUST00000182098.1|Atg7|ENSMUSG00000030314.10|autophagy related 7 	ENSMUST00000182793.1|Atg7|ENSMUSG00000030314.10|autophagy related 7 	ENSMUST00000182902.1|Atg7|ENSMUSG00000030314.10|autophagy related 7 	ENSMUST00000182428.1|Atg7|ENSMUSG00000030314.10|autophagy related 7 	ENSMUST00000182035.1|Atg7|ENSMUSG00000030314.10|autophagy related 7
mm10_v2_chr16_+_17619503_17619517	0.0871284	Pitx2_Otx2	ENSMUST00000165092.1|Smpd4|ENSMUSG00000005899.6|sphingomyelin phosphodiesterase 4
mm10_v2_chr8_+_124023394_124023394	0.0860502	Pitx2_Otx2	ENSMUST00000034457.8|Urb2|ENSMUSG00000031976.8|URB2 ribosome biogenesis 2 homolog (S. cerevisiae)
mm10_v2_chr11_+_117308135_117308158	0.0859317	Pitx2_Otx2	ENSMUST00000153668.1|Sept9|ENSMUSG00000059248.7|septin 9
mm10_v2_chr6_-_86733268_86733394	0.0858795	Pitx2_Otx2	ENSMUST00000001185.7|Gmcl1|ENSMUSG00000001157.7|germ cell-less homolog 1 (Drosophila)
mm10_v2_chr1_-_13589717_13589904	0.0848446	Pitx2_Otx2	ENSMUST00000027068.4|Tram1|ENSMUSG00000025935.4|translocating chain-associating membrane protein 1
mm10_v2_chr3_+_83055516_83055565	0.0844417	Pitx2_Otx2	ENSMUST00000150268.1|Plrg1|ENSMUSG00000027998.5|pleiotropic regulator 1, PRL1 homolog (Arabidopsis) 	ENSMUST00000122128.1|Plrg1|ENSMUSG00000027998.5|pleiotropic regulator 1, PRL1 homolog (Arabidopsis)
mm10_v2_chr11_-_84513485_84513553	0.0836847	Pitx2_Otx2	ENSMUST00000018841.2|Aatf|ENSMUSG00000018697.8|apoptosis antagonizing transcription factor
mm10_v2_chr2_-_35461247_35461271	0.0836259	Pitx2_Otx2	ENSMUST00000113001.2|Ggta1|ENSMUSG00000035778.11|glycoprotein galactosyltransferase alpha 1, 3 	ENSMUST00000113002.2|Ggta1|ENSMUSG00000035778.11|glycoprotein galactosyltransferase alpha 1, 3
mm10_v2_chr1_+_178187417_178187713	0.0835487	Pitx2_Otx2	ENSMUST00000161075.1|Desi2|ENSMUSG00000026502.7|desumoylating isopeptidase 2 	ENSMUST00000027783.7|Desi2|ENSMUSG00000026502.7|desumoylating isopeptidase 2
mm10_v2_chr10_-_40257648_40257687	0.0822357	Pitx2_Otx2	ENSMUST00000019982.7|Gtf3c6|ENSMUSG00000019837.7|general transcription factor IIIC, polypeptide 6, alpha
mm10_v2_chr7_+_35186370_35186408	0.0820894	Pitx2_Otx2	ENSMUST00000135452.1|Slc7a10|ENSMUSG00000030495.6|solute carrier family 7 (cationic amino acid transporter, y+ system), member 10 	ENSMUST00000001854.5|Slc7a10|ENSMUSG00000030495.6|solute carrier family 7 (cationic amino acid transporter, y+ system), member 10
mm10_v2_chr11_-_100527862_100527878	0.0814036	Pitx2_Otx2	ENSMUST00000107385.1|Acly|ENSMUSG00000020917.11|ATP citrate lyase
mm10_v2_chr8_-_121907678_121907694	0.0804467	Pitx2_Otx2	ENSMUST00000045557.9|Slc7a5|ENSMUSG00000040010.10|solute carrier family 7 (cationic amino acid transporter, y+ system), member 5
mm10_v2_chr4_+_115000156_115000170	0.0801461	Pitx2_Otx2	ENSMUST00000030490.6|Stil|ENSMUSG00000028718.10|Scl/Tal1 interrupting locus
mm10_v2_chr9_-_45955170_45955186	0.0799978	Pitx2_Otx2	ENSMUST00000162072.1|Sidt2|ENSMUSG00000034908.9|SID1 transmembrane family, member 2
mm10_v2_chr19_+_5447692_5447711	0.0797231	Pitx2_Otx2	ENSMUST00000025850.5|Fosl1|ENSMUSG00000024912.5|fos-like antigen 1
mm10_v2_chr7_+_24081888_24081948	0.0794401	Pitx2_Otx2	ENSMUST00000068975.3|Zfp180|ENSMUSG00000057101.6|zinc finger protein 180
mm10_v2_chr12_-_102423741_102423774	0.0793842	Pitx2_Otx2	ENSMUST00000110020.1|Lgmn|ENSMUSG00000021190.8|legumain
mm10_v2_chr9_-_51102062_51102085	0.0793448	Pitx2_Otx2	ENSMUST00000170947.1|4833427G06Rik|ENSMUSG00000032057.8|RIKEN cDNA 4833427G06 gene
mm10_v2_chr19_-_45591820_45591878	0.0784351	Pitx2_Otx2	ENSMUST00000160003.1|Fbxw4|ENSMUSG00000040913.4|F-box and WD-40 domain protein 4 	ENSMUST00000162879.1|Fbxw4|ENSMUSG00000040913.4|F-box and WD-40 domain protein 4
mm10_v2_chr11_-_98729374_98729435	0.0773093	Pitx2_Otx2	ENSMUST00000126565.1|Med24|ENSMUSG00000017210.8|mediator complex subunit 24 	ENSMUST00000100500.2|Med24|ENSMUSG00000017210.8|mediator complex subunit 24 	ENSMUST00000017354.6|Med24|ENSMUSG00000017210.8|mediator complex subunit 24
mm10_v2_chr11_-_115627948_115628122	0.0770008	Pitx2_Otx2	ENSMUST00000154623.1|Slc25a19|ENSMUSG00000020744.7|solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19 	ENSMUST00000106503.3|Slc25a19|ENSMUSG00000020744.7|solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19 	ENSMUST00000141614.1|Slc25a19|ENSMUSG00000020744.7|solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19
mm10_v2_chr8_+_120488416_120488490	0.0764512	Pitx2_Otx2	ENSMUST00000034279.9|Gse1|ENSMUSG00000031822.12|genetic suppressor element 1
mm10_v2_chr7_-_100662414_100662440	0.0764361	Pitx2_Otx2	ENSMUST00000079176.6|Plekhb1|ENSMUSG00000030701.10|pleckstrin homology domain containing, family B (evectins) member 1
mm10_v2_chr7_-_100662315_100662365	0.075985	Pitx2_Otx2	ENSMUST00000151123.1|Plekhb1|ENSMUSG00000030701.10|pleckstrin homology domain containing, family B (evectins) member 1 	ENSMUST00000107047.2|Plekhb1|ENSMUSG00000030701.10|pleckstrin homology domain containing, family B (evectins) member 1
mm10_v2_chr10_-_58718210_58718210	0.0755968	Pitx2_Otx2	ENSMUST00000169859.1|Gm17542|ENSMUSG00000091731.1|predicted gene, 17542
mm10_v2_chr17_+_25951472_25951472	0.0752571	Pitx2_Otx2	ENSMUST00000181174.1|D630044L22Rik|ENSMUSG00000097405.1|RIKEN cDNA gene D630044L22 gene
mm10_v2_chr11_-_6626030_6626072	0.0750921	Pitx2_Otx2	ENSMUST00000000394.7|Tbrg4|ENSMUSG00000000384.9|transforming growth factor beta regulated gene 4 	ENSMUST00000136682.1|Tbrg4|ENSMUSG00000000384.9|transforming growth factor beta regulated gene 4
mm10_v2_chr3_+_103809520_103809635	0.0726105	Pitx2_Otx2	ENSMUST00000076599.1|Ap4b1|ENSMUSG00000032952.5|adaptor-related protein complex AP-4, beta 1 	ENSMUST00000106824.1|Ap4b1|ENSMUSG00000032952.5|adaptor-related protein complex AP-4, beta 1 	ENSMUST00000106823.1|Ap4b1|ENSMUSG00000032952.5|adaptor-related protein complex AP-4, beta 1 	ENSMUST00000047285.2|Ap4b1|ENSMUSG00000032952.5|adaptor-related protein complex AP-4, beta 1
mm10_v2_chr4_-_15945359_15945507	0.0715091	Pitx2_Otx2	ENSMUST00000029877.8|Decr1|ENSMUSG00000028223.8|2,4-dienoyl CoA reductase 1, mitochondrial
mm10_v2_chr1_-_181183739_181183739	0.0699378	Pitx2_Otx2	ENSMUST00000159290.1|Wdr26|ENSMUSG00000038733.7|WD repeat domain 26
mm10_v2_chr9_+_22454290_22454290	0.0697145	Pitx2_Otx2	ENSMUST00000168332.1|Gm17545|ENSMUSG00000091159.1|predicted gene, 17545
mm10_v2_chr3_+_127791374_127791390	0.068364	Pitx2_Otx2	ENSMUST00000171621.1|Tifa|ENSMUSG00000046688.8|TRAF-interacting protein with forkhead-associated domain
mm10_v2_chr10_+_121365078_121365158	0.0681452	Pitx2_Otx2	ENSMUST00000040344.6|Gns|ENSMUSG00000034707.6|glucosamine (N-acetyl)-6-sulfatase
mm10_v2_chr2_+_129800451_129800526	0.0679815	Pitx2_Otx2	ENSMUST00000165413.2|Stk35|ENSMUSG00000037885.12|serine/threonine kinase 35 	ENSMUST00000166282.2|Stk35|ENSMUSG00000037885.12|serine/threonine kinase 35
mm10_v2_chr11_-_98587193_98587368	0.067477	Pitx2_Otx2	ENSMUST00000052919.7|Ormdl3|ENSMUSG00000038150.7|ORM1-like 3 (S. cerevisiae)
mm10_v2_chr7_+_127904079_127904125	0.0673747	Pitx2_Otx2	ENSMUST00000071056.7|Bckdk|ENSMUSG00000030802.8|branched chain ketoacid dehydrogenase kinase
mm10_v2_chr18_+_32837225_32837240	0.0670906	Pitx2_Otx2	ENSMUST00000166214.1|Wdr36|ENSMUSG00000038299.9|WD repeat domain 36 	ENSMUST00000053663.9|Wdr36|ENSMUSG00000038299.9|WD repeat domain 36
mm10_v2_chr10_-_116549101_116549163	0.0662425	Pitx2_Otx2	ENSMUST00000164088.1|Cnot2|ENSMUSG00000020166.8|CCR4-NOT transcription complex, subunit 2
mm10_v2_chr1_-_36709904_36710008	0.0661409	Pitx2_Otx2	ENSMUST00000043951.3|Actr1b|ENSMUSG00000037351.3|ARP1 actin-related protein 1B, centractin beta
mm10_v2_chr5_+_24423805_24423848	0.0648098	Pitx2_Otx2	ENSMUST00000153274.1|Slc4a2|ENSMUSG00000028962.8|solute carrier family 4 (anion exchanger), member 2
mm10_v2_chr10_+_79704499_79704570	0.0643795	Pitx2_Otx2	ENSMUST00000067036.5|Bsg|ENSMUSG00000023175.9|basigin 	ENSMUST00000178383.1|Bsg|ENSMUSG00000023175.9|basigin
mm10_v2_chr14_+_65968483_65968651	0.0643588	Pitx2_Otx2	ENSMUST00000022616.6|Clu|ENSMUSG00000022037.8|clusterin
mm10_v2_chr7_-_27228605_27228636	0.064211	Pitx2_Otx2	ENSMUST00000003850.7|Itpkc|ENSMUSG00000003752.8|inositol 1,4,5-trisphosphate 3-kinase C
mm10_v2_chr1_-_23909687_23909706	0.0639443	Pitx2_Otx2	ENSMUST00000129254.1|Smap1|ENSMUSG00000026155.7|small ArfGAP 1
mm10_v2_chr11_+_116966731_116966796	0.0636559	Pitx2_Otx2	ENSMUST00000136584.1|Mgat5b|ENSMUSG00000043857.10|mannoside acetylglucosaminyltransferase 5, isoenzyme B
mm10_v2_chr9_-_50555170_50555183	0.0633817	Pitx2_Otx2	ENSMUST00000119103.1|Bco2|ENSMUSG00000032066.9|beta-carotene oxygenase 2
mm10_v2_chr15_-_83464595_83464614	0.0629915	Pitx2_Otx2	ENSMUST00000171436.1|Pacsin2|ENSMUSG00000016664.8|protein kinase C and casein kinase substrate in neurons 2
mm10_v2_chr2_+_153161303_153161339	0.0629611	Pitx2_Otx2	ENSMUST00000089027.2|Tm9sf4|ENSMUSG00000068040.4|transmembrane 9 superfamily protein member 4
mm10_v2_chr1_-_128417352_128417416	0.0626849	Pitx2_Otx2	ENSMUST00000027602.8|Dars|ENSMUSG00000026356.9|aspartyl-tRNA synthetase 	ENSMUST00000064309.7|Dars|ENSMUSG00000026356.9|aspartyl-tRNA synthetase
mm10_v2_chr1_+_132477361_132477412	0.0626677	Pitx2_Otx2	ENSMUST00000027700.8|Rbbp5|ENSMUSG00000026439.8|retinoblastoma binding protein 5
mm10_v2_chr15_-_89425856_89425872	0.0622786	Pitx2_Otx2	ENSMUST00000109313.2|Cpt1b|ENSMUSG00000078937.2|carnitine palmitoyltransferase 1b, muscle
mm10_v2_chr11_+_82911253_82911294	0.0617024	Pitx2_Otx2	ENSMUST00000164945.1|Unc45b|ENSMUSG00000018845.8|unc-45 homolog B (C. elegans) 	ENSMUST00000018989.7|Unc45b|ENSMUSG00000018845.8|unc-45 homolog B (C. elegans)
mm10_v2_chr5_-_134456227_134456263	0.06015	Pitx2_Otx2	ENSMUST00000111244.1|Gtf2ird1|ENSMUSG00000023079.8|general transcription factor II I repeat domain-containing 1
mm10_v2_chr16_+_20694908_20695009	0.0597621	Pitx2_Otx2	ENSMUST00000056518.6|Fam131a|ENSMUSG00000050821.7|family with sequence similarity 131, member A
mm10_v2_chr1_+_181150926_181150984	0.0585476	Pitx2_Otx2	ENSMUST00000134115.1|Cnih4|ENSMUSG00000062169.7|cornichon homolog 4 (Drosophila) 	ENSMUST00000111059.1|Cnih4|ENSMUSG00000062169.7|cornichon homolog 4 (Drosophila)
mm10_v2_chr8_-_95434869_95434901	0.0583984	Pitx2_Otx2	ENSMUST00000034249.6|Gtl3|ENSMUSG00000031796.6|gene trap locus 3
mm10_v2_chr3_-_90695706_90695721	0.0571683	Pitx2_Otx2	ENSMUST00000069960.5|S100a9|ENSMUSG00000056071.6|S100 calcium binding protein A9 (calgranulin B) 	ENSMUST00000117167.1|S100a9|ENSMUSG00000056071.6|S100 calcium binding protein A9 (calgranulin B)
mm10_v2_chr3_-_10440054_10440127	0.0568371	Pitx2_Otx2	ENSMUST00000099223.4|Snx16|ENSMUSG00000027534.10|sorting nexin 16 	ENSMUST00000029047.6|Snx16|ENSMUSG00000027534.10|sorting nexin 16
mm10_v2_chr4_-_117682233_117682279	0.0567114	Pitx2_Otx2	ENSMUST00000102687.3|Dmap1|ENSMUSG00000009640.5|DNA methyltransferase 1-associated protein 1
mm10_v2_chrX_+_56963325_56963325	0.0563161	Pitx2_Otx2	ENSMUST00000096431.3|Gpr112|ENSMUSG00000053852.5|G protein-coupled receptor 112
mm10_v2_chr17_+_47385386_47385404	0.055642	Pitx2_Otx2	ENSMUST00000024774.7|Guca1b|ENSMUSG00000023979.8|guanylate cyclase activator 1B 	ENSMUST00000145462.1|Guca1b|ENSMUSG00000023979.8|guanylate cyclase activator 1B
mm10_v2_chr9_-_60838200_60838200	0.0548293	Pitx2_Otx2	ENSMUST00000063858.7|Gm9869|ENSMUSG00000052143.7|predicted gene 9869
mm10_v2_chr9_+_32116040_32116136	0.0545111	Pitx2_Otx2	ENSMUST00000174641.1|Arhgap32|ENSMUSG00000041444.8|Rho GTPase activating protein 32
mm10_v2_chrX_-_150459128_150459157	0.0541676	Pitx2_Otx2	ENSMUST00000173996.1|Tmem29|ENSMUSG00000041353.6|transmembrane protein 29
mm10_v2_chr2_-_26910569_26910677	0.0541029	Pitx2_Otx2	ENSMUST00000015920.5|Med22|ENSMUSG00000015776.6|mediator complex subunit 22 	ENSMUST00000139815.1|Med22|ENSMUSG00000015776.6|mediator complex subunit 22 	ENSMUST00000102899.3|Med22|ENSMUSG00000015776.6|mediator complex subunit 22
mm10_v2_chr17_+_24426676_24426701	0.053156	Pitx2_Otx2	ENSMUST00000024946.5|Eci1|ENSMUSG00000024132.5|enoyl-Coenzyme A delta isomerase 1
mm10_v2_chr7_-_45154519_45154584	0.0526842	Pitx2_Otx2	ENSMUST00000007977.7|Aldh16a1|ENSMUSG00000007833.7|aldehyde dehydrogenase 16 family, member A1 	ENSMUST00000107815.1|Aldh16a1|ENSMUSG00000007833.7|aldehyde dehydrogenase 16 family, member A1
mm10_v2_chr11_-_101302206_101302291	0.0525884	Pitx2_Otx2	ENSMUST00000140706.1|Becn1|ENSMUSG00000035086.7|beclin 1, autophagy related 	ENSMUST00000170502.1|Becn1|ENSMUSG00000035086.7|beclin 1, autophagy related 	ENSMUST00000172233.1|Becn1|ENSMUSG00000035086.7|beclin 1, autophagy related 	ENSMUST00000130916.1|Becn1|ENSMUSG00000035086.7|beclin 1, autophagy related
mm10_v2_chr5_-_36748639_36748694	0.0523834	Pitx2_Otx2	ENSMUST00000071949.3|Bloc1s4|ENSMUSG00000060708.3|biogenesis of organelles complex-1, subunit 4, cappuccino
mm10_v2_chr4_-_132922547_132922563	0.0517911	Pitx2_Otx2	ENSMUST00000030696.4|Fam76a|ENSMUSG00000028878.5|family with sequence similarity 76, member A
mm10_v2_chr8_-_11478618_11478668	0.0513088	Pitx2_Otx2	ENSMUST00000033900.5|Rab20|ENSMUSG00000031504.5|RAB20, member RAS oncogene family
mm10_v2_chr11_+_120677226_120677355	0.0505098	Pitx2_Otx2	ENSMUST00000129644.2|Aspscr1|ENSMUSG00000025142.11|alveolar soft part sarcoma chromosome region, candidate 1 (human) 	ENSMUST00000151160.1|Aspscr1|ENSMUSG00000025142.11|alveolar soft part sarcoma chromosome region, candidate 1 (human)
mm10_v2_chr5_+_138995038_138995066	0.0503589	Pitx2_Otx2	ENSMUST00000100518.2|6330403L08Rik|ENSMUSG00000075585.2|RIKEN cDNA 6330403L08 gene
mm10_v2_chr11_+_6292555_6292605	0.0502466	Pitx2_Otx2	ENSMUST00000081894.4|Ogdh|ENSMUSG00000020456.11|oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide)
mm10_v2_chr11_-_110168073_110168196	0.0498062	Pitx2_Otx2	ENSMUST00000044850.3|Abca9|ENSMUSG00000041797.7|ATP-binding cassette, sub-family A (ABC1), member 9
mm10_v2_chr11_-_5542177_5542219	0.0477523	Pitx2_Otx2	ENSMUST00000020776.4|Ccdc117|ENSMUSG00000020482.4|coiled-coil domain containing 117
mm10_v2_chr5_+_66968416_66968447	0.0469396	Pitx2_Otx2	ENSMUST00000038188.7|Limch1|ENSMUSG00000037736.12|LIM and calponin homology domains 1
mm10_v2_chr5_+_124629050_124629097	0.0460738	Pitx2_Otx2	ENSMUST00000037865.8|Atp6v0a2|ENSMUSG00000038023.8|ATPase, H+ transporting, lysosomal V0 subunit A2
mm10_v2_chr6_+_134929089_134929103	0.0441924	Pitx2_Otx2	ENSMUST00000183867.1|RP23-45G16.5|ENSMUSG00000098318.1|RP23-45G16.5	ENSMUST00000184991.1|RP23-45G16.5|ENSMUSG00000098318.1|RP23-45G16.5	ENSMUST00000183905.1|RP23-45G16.5|ENSMUSG00000098318.1|RP23-45G16.5
mm10_v2_chr2_-_35461365_35461449	0.0432366	Pitx2_Otx2	ENSMUST00000102794.1|Ggta1|ENSMUSG00000035778.11|glycoprotein galactosyltransferase alpha 1, 3
mm10_v2_chr11_-_100620165_100620209	0.0430644	Pitx2_Otx2	ENSMUST00000014339.8|Dnajc7|ENSMUSG00000014195.9|DnaJ (Hsp40) homolog, subfamily C, member 7
mm10_v2_chr10_-_93891141_93891202	0.0427625	Pitx2_Otx2	ENSMUST00000180840.1|Metap2|ENSMUSG00000036112.8|methionine aminopeptidase 2
mm10_v2_chr17_-_23586214_23586269	0.0424992	Pitx2_Otx2	ENSMUST00000115516.3|Zfp13|ENSMUSG00000062012.7|zinc finger protein 13
mm10_v2_chr9_-_50528641_50528698	0.0410104	Pitx2_Otx2	ENSMUST00000034570.5|Pts|ENSMUSG00000032067.5|6-pyruvoyl-tetrahydropterin synthase
mm10_v2_chr5_-_24423516_24423538	0.0403024	Pitx2_Otx2	ENSMUST00000030814.6|Cdk5|ENSMUSG00000028969.6|cyclin-dependent kinase 5
mm10_v2_chr18_-_24603791_24603843	0.0399521	Pitx2_Otx2	ENSMUST00000070726.3|Slc39a6|ENSMUSG00000024270.5|solute carrier family 39 (metal ion transporter), member 6
mm10_v2_chr5_-_139460501_139460549	0.0398507	Pitx2_Otx2	ENSMUST00000066052.7|3110082I17Rik|ENSMUSG00000053553.7|RIKEN cDNA 3110082I17 gene
mm10_v2_chr2_-_30967859_30967933	0.0396227	Pitx2_Otx2	ENSMUST00000028200.8|Tor1a|ENSMUSG00000026849.12|torsin family 1, member A (torsin A)
mm10_v2_chr9_+_86695542_86695542	0.0396163	Pitx2_Otx2	ENSMUST00000150367.2|A330041J22Rik|ENSMUSG00000087466.2|RIKEN cDNA A330041J22 gene
mm10_v2_chr5_+_140735526_140735567	0.0394424	Pitx2_Otx2	ENSMUST00000120630.2|Amz1|ENSMUSG00000050022.10|archaelysin family metallopeptidase 1
mm10_v2_chr16_+_35938470_35938489	0.0393029	Pitx2_Otx2	ENSMUST00000114878.1|Parp9|ENSMUSG00000022906.9|poly (ADP-ribose) polymerase family, member 9
mm10_v2_chrX_-_94212685_94212709	0.038926	Pitx2_Otx2	ENSMUST00000050328.8|Eif2s3x|ENSMUSG00000035150.9|eukaryotic translation initiation factor 2, subunit 3, structural gene X-linked
mm10_v2_chr1_-_120074023_120074074	0.038424	Pitx2_Otx2	ENSMUST00000056089.7|Tmem37|ENSMUSG00000050777.7|transmembrane protein 37
mm10_v2_chr8_-_69184177_69184240	0.03809	Pitx2_Otx2	ENSMUST00000185176.1|Lzts1|ENSMUSG00000036306.5|leucine zipper, putative tumor suppressor 1
mm10_v2_chr5_+_67260794_67260814	0.0379857	Pitx2_Otx2	ENSMUST00000161369.1|Tmem33|ENSMUSG00000037720.10|transmembrane protein 33
mm10_v2_chr19_+_3935186_3935247	0.0379682	Pitx2_Otx2	ENSMUST00000162708.1|Unc93b1|ENSMUSG00000036908.10|unc-93 homolog B1 (C. elegans) 	ENSMUST00000165711.1|Unc93b1|ENSMUSG00000036908.10|unc-93 homolog B1 (C. elegans)
mm10_v2_chr9_-_27155418_27155425	0.037879	Pitx2_Otx2	ENSMUST00000167074.1|Jam3|ENSMUSG00000031990.8|junction adhesion molecule 3 	ENSMUST00000034472.8|Jam3|ENSMUSG00000031990.8|junction adhesion molecule 3
mm10_v2_chrX_-_166479633_166479707	0.03744	Pitx2_Otx2	ENSMUST00000049435.8|Rab9|ENSMUSG00000079316.4|RAB9, member RAS oncogene family
mm10_v2_chr9_+_37401897_37401980	0.0371666	Pitx2_Otx2	ENSMUST00000115048.1|Robo4|ENSMUSG00000032125.13|roundabout homolog 4 (Drosophila)
mm10_v2_chr17_+_28313513_28313644	0.0364311	Pitx2_Otx2	ENSMUST00000114803.1|Fance|ENSMUSG00000007570.9|Fanconi anemia, complementation group E 	ENSMUST00000114801.1|Fance|ENSMUSG00000007570.9|Fanconi anemia, complementation group E 	ENSMUST00000114804.3|Fance|ENSMUSG00000007570.9|Fanconi anemia, complementation group E 	ENSMUST00000088007.4|Fance|ENSMUSG00000007570.9|Fanconi anemia, complementation group E
mm10_v2_chr6_+_48860339_48860358	0.0361096	Pitx2_Otx2	ENSMUST00000101425.3|Gm7932|ENSMUSG00000073090.3|predicted gene 7932
mm10_v2_chr2_+_127208358_127208444	0.0359345	Pitx2_Otx2	ENSMUST00000103220.3|Snrnp200|ENSMUSG00000003660.10|small nuclear ribonucleoprotein 200 (U5)
mm10_v2_chr8_+_71367210_71367238	0.0351585	Pitx2_Otx2	ENSMUST00000019169.7|Use1|ENSMUSG00000002395.8|unconventional SNARE in the ER 1 homolog (S. cerevisiae)
mm10_v2_chr2_-_67194695_67194736	0.0348951	Pitx2_Otx2	ENSMUST00000147939.1|Gm13598|ENSMUSG00000086908.1|predicted gene 13598
mm10_v2_chr8_+_13435459_13435503	0.034863	Pitx2_Otx2	ENSMUST00000167071.1|Tmem255b|ENSMUSG00000038457.10|transmembrane protein 255B 	ENSMUST00000167505.1|Tmem255b|ENSMUSG00000038457.10|transmembrane protein 255B
mm10_v2_chr7_-_133122615_133122762	0.034856	Pitx2_Otx2	ENSMUST00000167218.1|Ctbp2|ENSMUSG00000030970.10|C-terminal binding protein 2
mm10_v2_chr3_+_79884496_79884571	0.033825	Pitx2_Otx2	ENSMUST00000118853.1|Fam198b|ENSMUSG00000027955.10|family with sequence similarity 198, member B
mm10_v2_chr9_+_46273064_46273208	0.0337869	Pitx2_Otx2	ENSMUST00000156440.1|Zfp259|ENSMUSG00000032078.10|zinc finger protein 259 	ENSMUST00000034583.6|Zfp259|ENSMUSG00000032078.10|zinc finger protein 259 	ENSMUST00000114552.3|Zfp259|ENSMUSG00000032078.10|zinc finger protein 259
mm10_v2_chr8_+_18595131_18595186	0.032209	Pitx2_Otx2	ENSMUST00000039412.8|Mcph1|ENSMUSG00000039842.9|microcephaly, primary autosomal recessive 1
mm10_v2_chr8_-_70527645_70527783	0.0307344	Pitx2_Otx2	ENSMUST00000132867.1|Kxd1|ENSMUSG00000055553.10|KxDL motif containing 1
mm10_v2_chrM_+_7759_7927	0.0307073	Pitx2_Otx2	ENSMUST00000082407.1|mt-Atp8|ENSMUSG00000064356.3|mitochondrially encoded ATP synthase 8 	ENSMUST00000082408.1|mt-Atp6|ENSMUSG00000064357.1|mitochondrially encoded ATP synthase 6
mm10_v2_chr2_+_150909565_150909642	0.0303794	Pitx2_Otx2	ENSMUST00000028948.4|Gins1|ENSMUSG00000027454.4|GINS complex subunit 1 (Psf1 homolog)
mm10_v2_chr7_-_118995211_118995219	0.0297869	Pitx2_Otx2	ENSMUST00000008878.8|Gprc5b|ENSMUSG00000008734.8|G protein-coupled receptor, family C, group 5, member B
mm10_v2_chr10_+_128225830_128225845	0.0297819	Pitx2_Otx2	ENSMUST00000026455.7|Mip|ENSMUSG00000025389.7|major intrinsic protein of eye lens fiber
mm10_v2_chr11_-_116306696_116306750	0.029011	Pitx2_Otx2	ENSMUST00000133468.1|Exoc7|ENSMUSG00000020792.9|exocyst complex component 7 	ENSMUST00000106411.3|Exoc7|ENSMUSG00000020792.9|exocyst complex component 7 	ENSMUST00000106413.3|Exoc7|ENSMUSG00000020792.9|exocyst complex component 7 	ENSMUST00000021147.7|Exoc7|ENSMUSG00000020792.9|exocyst complex component 7
mm10_v2_chr4_+_45203921_45203931	0.02828	Pitx2_Otx2	ENSMUST00000107804.1|Frmpd1|ENSMUSG00000035615.6|FERM and PDZ domain containing 1
mm10_v2_chr11_+_6292120_6292203	0.0281103	Pitx2_Otx2	ENSMUST00000135124.1|Ogdh|ENSMUSG00000020456.11|oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide)
mm10_v2_chr13_-_33935782_33935875	0.0272729	Pitx2_Otx2	ENSMUST00000168350.1|Serpinb6a|ENSMUSG00000060147.9|serine (or cysteine) peptidase inhibitor, clade B, member 6a 	ENSMUST00000167260.1|Serpinb6a|ENSMUSG00000060147.9|serine (or cysteine) peptidase inhibitor, clade B, member 6a
mm10_v2_chr7_-_126922887_126922926	0.0264554	Pitx2_Otx2	ENSMUST00000134134.1|Tmem219|ENSMUSG00000060538.8|transmembrane protein 219 	ENSMUST00000119781.1|Tmem219|ENSMUSG00000060538.8|transmembrane protein 219 	ENSMUST00000121612.2|Tmem219|ENSMUSG00000060538.8|transmembrane protein 219
mm10_v2_chr4_+_115000174_115000189	0.0257828	Pitx2_Otx2	ENSMUST00000129957.1|Stil|ENSMUSG00000028718.10|Scl/Tal1 interrupting locus
mm10_v2_chr6_+_86438714_86438727	0.0257128	Pitx2_Otx2	ENSMUST00000113698.1|C87436|ENSMUSG00000046679.10|expressed sequence C87436
mm10_v2_chr3_-_34005490_34005514	0.0255862	Pitx2_Otx2	ENSMUST00000060997.2|Gm9791|ENSMUSG00000044434.2|predicted pseudogene 9791
mm10_v2_chr11_-_50431101_50431131	0.0249086	Pitx2_Otx2	ENSMUST00000020643.3|Rufy1|ENSMUSG00000020375.3|RUN and FYVE domain containing 1
mm10_v2_chr2_-_29787622_29787680	0.0241815	Pitx2_Otx2	ENSMUST00000177467.1|Trub2|ENSMUSG00000039826.7|TruB pseudouridine (psi) synthase homolog 2 (E. coli) 	ENSMUST00000113807.3|Trub2|ENSMUSG00000039826.7|TruB pseudouridine (psi) synthase homolog 2 (E. coli)
mm10_v2_chr2_+_30281043_30281043	0.0234517	Pitx2_Otx2	ENSMUST00000143119.2|RP23-395P6.9|ENSMUSG00000098794.1|RP23-395P6.9
mm10_v2_chr9_+_64121501_64121606	0.0231984	Pitx2_Otx2	ENSMUST00000118215.1|Lctl|ENSMUSG00000032401.9|lactase-like
mm10_v2_chr2_-_26294550_26294561	0.023039	Pitx2_Otx2	ENSMUST00000057224.3|4932418E24Rik|ENSMUSG00000048038.6|RIKEN cDNA 4932418E24 gene
mm10_v2_chr18_+_37742088_37742137	0.0228819	Pitx2_Otx2	ENSMUST00000003599.6|Pcdhga9|ENSMUSG00000023036.8|protocadherin gamma subfamily A, 9
mm10_v2_chr2_+_121506748_121506792	0.0215742	Pitx2_Otx2	ENSMUST00000099473.3|Wdr76|ENSMUSG00000027242.8|WD repeat domain 76 	ENSMUST00000110602.2|Wdr76|ENSMUSG00000027242.8|WD repeat domain 76
mm10_v2_chr6_-_113531575_113531667	0.0214169	Pitx2_Otx2	ENSMUST00000032425.5|Emc3|ENSMUSG00000030286.5|ER membrane protein complex subunit 3
mm10_v2_chr8_-_111393810_111393834	0.0199533	Pitx2_Otx2	ENSMUST00000038475.8|Fa2h|ENSMUSG00000033579.10|fatty acid 2-hydroxylase
mm10_v2_chr14_+_3188255_3188318	0.0193055	Pitx2_Otx2	ENSMUST00000100920.3|Gm5795|ENSMUSG00000079409.2|predicted gene 5795 	ENSMUST00000171150.1|Gm5795|ENSMUSG00000079409.2|predicted gene 5795 	ENSMUST00000166275.1|Gm5795|ENSMUSG00000079409.2|predicted gene 5795
mm10_v2_chr1_-_171059390_171059405	0.0184038	Pitx2_Otx2	ENSMUST00000164044.1|Fcgr3|ENSMUSG00000059498.7|Fc receptor, IgG, low affinity III 	ENSMUST00000169017.1|Fcgr3|ENSMUSG00000059498.7|Fc receptor, IgG, low affinity III
mm10_v2_chr7_-_25398697_25398719	0.0177176	Pitx2_Otx2	ENSMUST00000105177.2|Lipe|ENSMUSG00000003123.9|lipase, hormone sensitive 	ENSMUST00000149349.1|Lipe|ENSMUSG00000003123.9|lipase, hormone sensitive
mm10_v2_chr7_-_100583072_100583124	0.0174186	Pitx2_Otx2	ENSMUST00000152876.1|Mrpl48|ENSMUSG00000030706.10|mitochondrial ribosomal protein L48 	ENSMUST00000150042.1|Mrpl48|ENSMUSG00000030706.10|mitochondrial ribosomal protein L48
mm10_v2_chr7_-_16874845_16874889	0.0171393	Pitx2_Otx2	ENSMUST00000181501.1|9330104G04Rik|ENSMUSG00000097842.1|RIKEN cDNA 9330104G04 gene
mm10_v2_chr14_-_51988829_51988837	0.0171013	Pitx2_Otx2	ENSMUST00000181008.1|Gm16617|ENSMUSG00000097633.1|predicted gene, 16617
mm10_v2_chr7_-_114254659_114254733	0.0164493	Pitx2_Otx2	ENSMUST00000033012.7|Copb1|ENSMUSG00000030754.8|coatomer protein complex, subunit beta 1
mm10_v2_chr10_-_79746553_79746586	0.0163104	Pitx2_Otx2	ENSMUST00000020580.6|Polrmt|ENSMUSG00000020329.6|polymerase (RNA) mitochondrial (DNA directed) 	ENSMUST00000159016.1|Polrmt|ENSMUSG00000020329.6|polymerase (RNA) mitochondrial (DNA directed)
mm10_v2_chr6_-_73221625_73221664	0.0158279	Pitx2_Otx2	ENSMUST00000064948.6|Dnah6|ENSMUSG00000052861.7|dynein, axonemal, heavy chain 6 	ENSMUST00000114040.1|Dnah6|ENSMUSG00000052861.7|dynein, axonemal, heavy chain 6
mm10_v2_chr7_-_141172809_141172862	0.0157913	Pitx2_Otx2	ENSMUST00000167493.1|Rnh1|ENSMUSG00000038650.8|ribonuclease/angiogenin inhibitor 1
mm10_v2_chr11_-_116412965_116413004	0.0149724	Pitx2_Otx2	ENSMUST00000100202.3|Rnf157|ENSMUSG00000052949.8|ring finger protein 157 	ENSMUST00000106398.2|Rnf157|ENSMUSG00000052949.8|ring finger protein 157
mm10_v2_chr4_+_108834601_108834617	0.0146459	Pitx2_Otx2	ENSMUST00000030296.8|Txndc12|ENSMUSG00000028567.8|thioredoxin domain containing 12 (endoplasmic reticulum)
mm10_v2_chr19_-_4191035_4191069	0.0142657	Pitx2_Otx2	ENSMUST00000045864.2|Tbc1d10c|ENSMUSG00000040247.5|TBC1 domain family, member 10c
mm10_v2_chr3_-_36053512_36053547	0.0139821	Pitx2_Otx2	ENSMUST00000166644.2|Ccdc144b|ENSMUSG00000047696.10|coiled-coil domain containing 144B 	ENSMUST00000062056.8|Ccdc144b|ENSMUSG00000047696.10|coiled-coil domain containing 144B
mm10_v2_chr1_-_23383149_23383225	0.0117578	Pitx2_Otx2	ENSMUST00000027343.5|Ogfrl1|ENSMUSG00000026158.5|opioid growth factor receptor-like 1
mm10_v2_chr7_-_144582392_144582463	0.0097893	Pitx2_Otx2	ENSMUST00000033394.7|Fadd|ENSMUSG00000031077.7|Fas (TNFRSF6)-associated via death domain
mm10_v2_chr3_-_138131356_138131381	0.00850863	Pitx2_Otx2	ENSMUST00000029805.8|Mttp|ENSMUSG00000028158.8|microsomal triglyceride transfer protein
mm10_v2_chr16_-_89818338_89818356	0.00738808	Pitx2_Otx2	ENSMUST00000164263.2|Tiam1|ENSMUSG00000002489.9|T cell lymphoma invasion and metastasis 1
mm10_v2_chr5_+_140331860_140331954	0.00724468	Pitx2_Otx2	ENSMUST00000071881.3|Nudt1|ENSMUSG00000036639.6|nudix (nucleoside diphosphate linked moiety X)-type motif 1 	ENSMUST00000050205.5|Nudt1|ENSMUSG00000036639.6|nudix (nucleoside diphosphate linked moiety X)-type motif 1 	ENSMUST00000110827.1|Nudt1|ENSMUSG00000036639.6|nudix (nucleoside diphosphate linked moiety X)-type motif 1
mm10_v2_chrX_-_103186618_103186671	0.00717147	Pitx2_Otx2	ENSMUST00000121720.1|Nap1l2|ENSMUSG00000082229.1|nucleosome assembly protein 1-like 2
mm10_v2_chr12_-_113422730_113422744	0.00713661	Pitx2_Otx2	ENSMUST00000177715.1|Ighm|ENSMUSG00000076617.3|immunoglobulin heavy constant mu 	ENSMUST00000103426.1|Ighm|ENSMUSG00000076617.3|immunoglobulin heavy constant mu
mm10_v2_chr17_-_35969724_35969785	0.00703727	Pitx2_Otx2	ENSMUST00000043757.8|Abcf1|ENSMUSG00000038762.9|ATP-binding cassette, sub-family F (GCN20), member 1
mm10_v2_chrX_-_74353575_74353622	0.00643176	Pitx2_Otx2	ENSMUST00000114152.1|Lage3|ENSMUSG00000015289.4|L antigen family, member 3 	ENSMUST00000114153.1|Lage3|ENSMUSG00000015289.4|L antigen family, member 3 	ENSMUST00000015433.3|Lage3|ENSMUSG00000015289.4|L antigen family, member 3
mm10_v2_chr11_+_62648811_62648835	0.00627274	Pitx2_Otx2	ENSMUST00000127589.1|Mmgt2|ENSMUSG00000048497.5|membrane magnesium transporter 2 	ENSMUST00000155759.2|Mmgt2|ENSMUSG00000048497.5|membrane magnesium transporter 2
mm10_v2_chr2_-_156992021_156992119	0.00608707	Pitx2_Otx2	ENSMUST00000109558.1|Ndrg3|ENSMUSG00000027634.8|N-myc downstream regulated gene 3 	ENSMUST00000069600.6|Ndrg3|ENSMUSG00000027634.8|N-myc downstream regulated gene 3 	ENSMUST00000072298.6|Ndrg3|ENSMUSG00000027634.8|N-myc downstream regulated gene 3
mm10_v2_chr6_+_134929118_134929164	0.00495444	Pitx2_Otx2	ENSMUST00000185152.1|RP23-45G16.5|ENSMUSG00000098318.1|RP23-45G16.5	ENSMUST00000184504.1|RP23-45G16.5|ENSMUSG00000098318.1|RP23-45G16.5
mm10_v2_chr8_-_27128615_27128687	0.00458347	Pitx2_Otx2	ENSMUST00000033877.4|Brf2|ENSMUSG00000031487.4|BRF2, subunit of RNA polymerase III transcription initiation factor, BRF1-like
mm10_v2_chr16_+_17619341_17619389	0.00373244	Pitx2_Otx2	ENSMUST00000006053.6|Smpd4|ENSMUSG00000005899.6|sphingomyelin phosphodiesterase 4 	ENSMUST00000171435.1|Smpd4|ENSMUSG00000005899.6|sphingomyelin phosphodiesterase 4 	ENSMUST00000163476.1|Smpd4|ENSMUSG00000005899.6|sphingomyelin phosphodiesterase 4 	ENSMUST00000168101.1|Smpd4|ENSMUSG00000005899.6|sphingomyelin phosphodiesterase 4 	ENSMUST00000165363.1|Smpd4|ENSMUSG00000005899.6|sphingomyelin phosphodiesterase 4 	ENSMUST00000169662.1|Smpd4|ENSMUSG00000005899.6|sphingomyelin phosphodiesterase 4 	ENSMUST00000090159.4|Smpd4|ENSMUSG00000005899.6|sphingomyelin phosphodiesterase 4 	ENSMUST00000172182.1|Smpd4|ENSMUSG00000005899.6|sphingomyelin phosphodiesterase 4 	ENSMUST00000163592.1|Smpd4|ENSMUSG00000005899.6|sphingomyelin phosphodiesterase 4
mm10_v2_chr2_+_155775333_155775392	0.00281425	Pitx2_Otx2	ENSMUST00000029141.5|Mmp24|ENSMUSG00000027612.7|matrix metallopeptidase 24
mm10_v2_chr4_-_132922487_132922544	0.00263512	Pitx2_Otx2	ENSMUST00000097856.3|Fam76a|ENSMUSG00000028878.5|family with sequence similarity 76, member A
mm10_v2_chr15_-_89425795_89425851	0.0023165	Pitx2_Otx2	ENSMUST00000168376.1|Cpt1b|ENSMUSG00000078937.2|carnitine palmitoyltransferase 1b, muscle
mm10_v2_chr7_-_16221993_16222050	0.000914689	Pitx2_Otx2	ENSMUST00000118795.1|Dhx34|ENSMUSG00000006019.9|DEAH (Asp-Glu-Ala-His) box polypeptide 34 	ENSMUST00000119102.1|Dhx34|ENSMUSG00000006019.9|DEAH (Asp-Glu-Ala-His) box polypeptide 34 	ENSMUST00000094816.2|Dhx34|ENSMUSG00000006019.9|DEAH (Asp-Glu-Ala-His) box polypeptide 34 	ENSMUST00000163968.1|Dhx34|ENSMUSG00000006019.9|DEAH (Asp-Glu-Ala-His) box polypeptide 34 	ENSMUST00000121123.1|Dhx34|ENSMUSG00000006019.9|DEAH (Asp-Glu-Ala-His) box polypeptide 34
