mm10_v2_chr18_+_60925612_60925639	61.6394	Rfx3_Rfx1_Rfx4	ENSMUST00000102888.3|Camk2a|ENSMUSG00000024617.10|calcium/calmodulin-dependent protein kinase II alpha 	ENSMUST00000025519.4|Camk2a|ENSMUSG00000024617.10|calcium/calmodulin-dependent protein kinase II alpha
mm10_v2_chr18_+_60925644_60925725	28.0703	Rfx3_Rfx1_Rfx4	ENSMUST00000115297.1|Camk2a|ENSMUSG00000024617.10|calcium/calmodulin-dependent protein kinase II alpha
mm10_v2_chr7_-_31051431_31051488	20.9847	Rfx3_Rfx1_Rfx4	ENSMUST00000073892.4|Fxyd7|ENSMUSG00000036578.6|FXYD domain-containing ion transport regulator 7
mm10_v2_chr15_+_98167806_98167873	20.1761	Rfx3_Rfx1_Rfx4	ENSMUST00000031914.4|AI836003|ENSMUSG00000029875.4|expressed sequence AI836003
mm10_v2_chr2_+_121289589_121289606	16.8541	Rfx3_Rfx1_Rfx4	ENSMUST00000094639.3|Map1a|ENSMUSG00000027254.7|microtubule-associated protein 1 A
mm10_v2_chr5_+_120431770_120431905	14.3919	Rfx3_Rfx1_Rfx4	ENSMUST00000031591.7|Lhx5|ENSMUSG00000029595.7|LIM homeobox protein 5
mm10_v2_chr16_+_14906622_14906680	12.6718	Rfx3_Rfx1_Rfx4	ENSMUST00000090277.1|Efcab1|ENSMUSG00000068617.4|EF hand calcium binding domain 1
mm10_v2_chr11_-_105944412_105944518	12.6051	Rfx3_Rfx1_Rfx4	ENSMUST00000019734.4|Cyb561|ENSMUSG00000019590.10|cytochrome b-561 	ENSMUST00000184269.1|Cyb561|ENSMUSG00000019590.10|cytochrome b-561 	ENSMUST00000150563.1|Cyb561|ENSMUSG00000019590.10|cytochrome b-561
mm10_v2_chr17_-_31277327_31277356	12.1168	Rfx3_Rfx1_Rfx4	ENSMUST00000024832.7|Rsph1|ENSMUSG00000024033.9|radial spoke head 1 homolog (Chlamydomonas)
mm10_v2_chr5_+_24985840_24985862	11.9727	Rfx3_Rfx1_Rfx4	ENSMUST00000075081.6|1500035N22Rik|ENSMUSG00000059631.6|RIKEN cDNA 1500035N22 gene
mm10_v2_chr11_-_116335384_116335399	11.2568	Rfx3_Rfx1_Rfx4	ENSMUST00000036215.7|Foxj1|ENSMUSG00000034227.7|forkhead box J1
mm10_v2_chr4_-_119415494_119415522	10.9215	Rfx3_Rfx1_Rfx4	ENSMUST00000063642.2|Ccdc30|ENSMUSG00000028637.9|coiled-coil domain containing 30
mm10_v2_chr14_-_8309770_8309795	9.97111	Rfx3_Rfx1_Rfx4	ENSMUST00000121887.1|Fam107a|ENSMUSG00000021750.9|family with sequence similarity 107, member A 	ENSMUST00000036070.8|Fam107a|ENSMUSG00000021750.9|family with sequence similarity 107, member A 	ENSMUST00000137133.1|Fam107a|ENSMUSG00000021750.9|family with sequence similarity 107, member A
mm10_v2_chr11_-_105944128_105944223	9.93187	Rfx3_Rfx1_Rfx4	ENSMUST00000184086.1|Cyb561|ENSMUSG00000019590.10|cytochrome b-561
mm10_v2_chr7_-_140082246_140082301	9.78739	Rfx3_Rfx1_Rfx4	ENSMUST00000166758.2|Caly|ENSMUSG00000025468.8|calcyon neuron-specific vesicular protein
mm10_v2_chr7_-_140082489_140082556	9.30975	Rfx3_Rfx1_Rfx4	ENSMUST00000026541.7|Caly|ENSMUSG00000025468.8|calcyon neuron-specific vesicular protein
mm10_v2_chr2_-_118256929_118256973	9.23732	Rfx3_Rfx1_Rfx4	ENSMUST00000028820.6|Fsip1|ENSMUSG00000027344.7|fibrous sheath-interacting protein 1 	ENSMUST00000028821.3|Fsip1|ENSMUSG00000027344.7|fibrous sheath-interacting protein 1
mm10_v2_chr6_+_56017489_56017517	9.11892	Rfx3_Rfx1_Rfx4	ENSMUST00000052827.4|Ppp1r17|ENSMUSG00000002930.5|protein phosphatase 1, regulatory subunit 17
mm10_v2_chr3_+_67374091_67374102	8.18855	Rfx3_Rfx1_Rfx4	ENSMUST00000077916.5|Mlf1|ENSMUSG00000048416.9|myeloid leukemia factor 1
mm10_v2_chr4_-_153482768_153482811	7.95794	Rfx3_Rfx1_Rfx4	ENSMUST00000105646.2|Ajap1|ENSMUSG00000039546.9|adherens junction associated protein 1
mm10_v2_chr8_+_94772009_94772009	7.87997	Rfx3_Rfx1_Rfx4	ENSMUST00000034230.5|Cx3cl1|ENSMUSG00000031778.6|chemokine (C-X3-C motif) ligand 1
mm10_v2_chr3_+_67374116_67374154	7.72907	Rfx3_Rfx1_Rfx4	ENSMUST00000061322.8|Mlf1|ENSMUSG00000048416.9|myeloid leukemia factor 1
mm10_v2_chr17_+_34629533_34629620	7.70007	Rfx3_Rfx1_Rfx4	ENSMUST00000015620.6|Prrt1|ENSMUSG00000015476.6|proline-rich transmembrane protein 1
mm10_v2_chr7_+_131966446_131966469	7.69302	Rfx3_Rfx1_Rfx4	ENSMUST00000045840.4|Gpr26|ENSMUSG00000040125.4|G protein-coupled receptor 26
mm10_v2_chr4_+_111719975_111720047	7.60383	Rfx3_Rfx1_Rfx4	ENSMUST00000038868.7|Spata6|ENSMUSG00000034401.10|spermatogenesis associated 6 	ENSMUST00000070513.6|Spata6|ENSMUSG00000034401.10|spermatogenesis associated 6 	ENSMUST00000153746.1|Spata6|ENSMUSG00000034401.10|spermatogenesis associated 6
mm10_v2_chr7_+_99268338_99268388	7.30989	Rfx3_Rfx1_Rfx4	ENSMUST00000107100.2|Map6|ENSMUSG00000055407.7|microtubule-associated protein 6
mm10_v2_chr16_-_16829276_16829349	7.1314	Rfx3_Rfx1_Rfx4	ENSMUST00000023468.5|Spag6|ENSMUSG00000022783.5|sperm associated antigen 6
mm10_v2_chr19_+_47178820_47178997	7.10118	Rfx3_Rfx1_Rfx4	ENSMUST00000111808.3|Neurl1a|ENSMUSG00000006435.9|neuralized homolog 1A (Drosophila)
mm10_v2_chr9_-_121839460_121839465	6.75114	Rfx3_Rfx1_Rfx4	ENSMUST00000135986.2|Ccdc13|ENSMUSG00000079235.4|coiled-coil domain containing 13
mm10_v2_chr3_-_88458876_88459043	6.72314	Rfx3_Rfx1_Rfx4	ENSMUST00000147200.1|Sema4a|ENSMUSG00000028064.11|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A 	ENSMUST00000169222.1|Sema4a|ENSMUSG00000028064.11|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A
mm10_v2_chr13_+_24845122_24845186	6.61616	Rfx3_Rfx1_Rfx4	ENSMUST00000006893.8|D130043K22Rik|ENSMUSG00000006711.9|RIKEN cDNA D130043K22 gene
mm10_v2_chrX_+_7919816_7919905	6.60919	Rfx3_Rfx1_Rfx4	ENSMUST00000041096.3|Pcsk1n|ENSMUSG00000039278.10|proprotein convertase subtilisin/kexin type 1 inhibitor
mm10_v2_chr3_-_88459047_88459101	6.45218	Rfx3_Rfx1_Rfx4	ENSMUST00000165898.1|Sema4a|ENSMUSG00000028064.11|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A 	ENSMUST00000127436.1|Sema4a|ENSMUSG00000028064.11|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A
mm10_v2_chr4_+_111720187_111720205	5.9783	Rfx3_Rfx1_Rfx4	ENSMUST00000084354.3|Spata6|ENSMUSG00000034401.10|spermatogenesis associated 6
mm10_v2_chr1_-_84696182_84696221	5.97571	Rfx3_Rfx1_Rfx4	ENSMUST00000049126.6|Dner|ENSMUSG00000036766.6|delta/notch-like EGF-related receptor
mm10_v2_chr1_+_66386968_66386999	5.95605	Rfx3_Rfx1_Rfx4	ENSMUST00000145419.1|Map2|ENSMUSG00000015222.11|microtubule-associated protein 2
mm10_v2_chr17_+_85620816_85620843	5.94445	Rfx3_Rfx1_Rfx4	ENSMUST00000175898.2|Six3|ENSMUSG00000038805.9|sine oculis-related homeobox 3
mm10_v2_chr1_+_172521044_172521181	5.90663	Rfx3_Rfx1_Rfx4	ENSMUST00000085894.5|Ccdc19|ENSMUSG00000026546.10|coiled-coil domain containing 19 	ENSMUST00000161140.1|Ccdc19|ENSMUSG00000026546.10|coiled-coil domain containing 19 	ENSMUST00000162988.1|Ccdc19|ENSMUSG00000026546.10|coiled-coil domain containing 19
mm10_v2_chr15_+_89532816_89532890	5.74406	Rfx3_Rfx1_Rfx4	ENSMUST00000167173.1|Shank3|ENSMUSG00000022623.9|SH3/ankyrin domain gene 3
mm10_v2_chr14_-_8666236_8666279	5.61526	Rfx3_Rfx1_Rfx4	ENSMUST00000102996.3|4930452B06Rik|ENSMUSG00000021747.11|RIKEN cDNA 4930452B06 gene
mm10_v2_chr7_+_16959714_16959800	5.57775	Rfx3_Rfx1_Rfx4	ENSMUST00000038163.6|Pnmal1|ENSMUSG00000041141.6|PNMA-like 1
mm10_v2_chr12_-_84148449_84148499	5.49561	Rfx3_Rfx1_Rfx4	ENSMUST00000061425.2|Pnma1|ENSMUSG00000054383.2|paraneoplastic antigen MA1
mm10_v2_chr13_+_112987802_112987838	5.4877	Rfx3_Rfx1_Rfx4	ENSMUST00000038404.4|Ccno|ENSMUSG00000042417.4|cyclin O
mm10_v2_chr6_+_128375456_128375456	5.44742	Rfx3_Rfx1_Rfx4	ENSMUST00000100926.2|4933413G19Rik|ENSMUSG00000079304.3|RIKEN cDNA 4933413G19 gene
mm10_v2_chr7_+_16944645_16944720	5.41307	Rfx3_Rfx1_Rfx4	ENSMUST00000094807.5|Pnmal2|ENSMUSG00000070802.5|PNMA-like 2
mm10_v2_chr9_+_59589288_59589353	5.29459	Rfx3_Rfx1_Rfx4	ENSMUST00000121266.1|Celf6|ENSMUSG00000032297.5|CUGBP, Elav-like family member 6 	ENSMUST00000118164.1|Celf6|ENSMUSG00000032297.5|CUGBP, Elav-like family member 6
mm10_v2_chr11_-_67965631_67965663	5.0863	Rfx3_Rfx1_Rfx4	ENSMUST00000021287.5|Wdr16|ENSMUSG00000020904.5|WD repeat domain 16 	ENSMUST00000126766.1|Wdr16|ENSMUSG00000020904.5|WD repeat domain 16
mm10_v2_chr2_-_21205342_21205371	4.81152	Rfx3_Rfx1_Rfx4	ENSMUST00000027992.2|Enkur|ENSMUSG00000026679.3|enkurin, TRPC channel interacting protein
mm10_v2_chr7_+_139894696_139894854	4.74132	Rfx3_Rfx1_Rfx4	ENSMUST00000151421.1|Kndc1|ENSMUSG00000066129.8|kinase non-catalytic C-lobe domain (KIND) containing 1 	ENSMUST00000053445.9|Kndc1|ENSMUSG00000066129.8|kinase non-catalytic C-lobe domain (KIND) containing 1 	ENSMUST00000121839.1|Kndc1|ENSMUSG00000066129.8|kinase non-catalytic C-lobe domain (KIND) containing 1
mm10_v2_chr18_-_77047243_77047279	4.63884	Rfx3_Rfx1_Rfx4	ENSMUST00000137354.1|Katnal2|ENSMUSG00000025420.7|katanin p60 subunit A-like 2 	ENSMUST00000137498.1|Katnal2|ENSMUSG00000025420.7|katanin p60 subunit A-like 2
mm10_v2_chr9_-_27155418_27155425	4.56585	Rfx3_Rfx1_Rfx4	ENSMUST00000167074.1|Jam3|ENSMUSG00000031990.8|junction adhesion molecule 3 	ENSMUST00000034472.8|Jam3|ENSMUSG00000031990.8|junction adhesion molecule 3
mm10_v2_chr6_-_90810118_90810160	4.55747	Rfx3_Rfx1_Rfx4	ENSMUST00000101151.3|Iqsec1|ENSMUSG00000034312.7|IQ motif and Sec7 domain 1
mm10_v2_chr17_+_27685197_27685233	4.41657	Rfx3_Rfx1_Rfx4	ENSMUST00000097360.2|Pacsin1|ENSMUSG00000040276.8|protein kinase C and casein kinase substrate in neurons 1
mm10_v2_chr18_-_46198810_46198824	4.35218	Rfx3_Rfx1_Rfx4	ENSMUST00000167364.1|Trim36|ENSMUSG00000033949.5|tripartite motif-containing 36
mm10_v2_chr1_-_172329261_172329307	4.25859	Rfx3_Rfx1_Rfx4	ENSMUST00000062387.2|Kcnj9|ENSMUSG00000038026.7|potassium inwardly-rectifying channel, subfamily J, member 9
mm10_v2_chr17_+_28142267_28142321	4.18904	Rfx3_Rfx1_Rfx4	ENSMUST00000043503.3|Scube3|ENSMUSG00000038677.7|signal peptide, CUB domain, EGF-like 3
mm10_v2_chr11_-_6606053_6606053	4.1792	Rfx3_Rfx1_Rfx4	ENSMUST00000045713.3|Nacad|ENSMUSG00000041073.4|NAC alpha domain containing
mm10_v2_chr8_-_95142477_95142577	4.17203	Rfx3_Rfx1_Rfx4	ENSMUST00000034240.7|Kifc3|ENSMUSG00000031788.7|kinesin family member C3 	ENSMUST00000169748.1|Kifc3|ENSMUSG00000031788.7|kinesin family member C3
mm10_v2_chr16_+_44394771_44394804	4.15765	Rfx3_Rfx1_Rfx4	ENSMUST00000099742.2|Wdr52|ENSMUSG00000071550.7|WD repeat domain 52
mm10_v2_chr1_+_161142706_161142767	4.13546	Rfx3_Rfx1_Rfx4	ENSMUST00000111608.1|Ankrd45|ENSMUSG00000044835.9|ankyrin repeat domain 45 	ENSMUST00000052245.8|Ankrd45|ENSMUSG00000044835.9|ankyrin repeat domain 45
mm10_v2_chr7_-_141214080_141214082	4.09499	Rfx3_Rfx1_Rfx4	ENSMUST00000026573.5|1600016N20Rik|ENSMUSG00000025500.5|RIKEN cDNA 1600016N20 gene 	ENSMUST00000170841.1|1600016N20Rik|ENSMUSG00000025500.5|RIKEN cDNA 1600016N20 gene
mm10_v2_chrX_+_36195938_36195946	4.07758	Rfx3_Rfx1_Rfx4	ENSMUST00000048067.3|Zcchc12|ENSMUSG00000036699.6|zinc finger, CCHC domain containing 12
mm10_v2_chr18_-_77047282_77047313	4.06024	Rfx3_Rfx1_Rfx4	ENSMUST00000154665.1|Katnal2|ENSMUSG00000025420.7|katanin p60 subunit A-like 2 	ENSMUST00000026486.6|Katnal2|ENSMUSG00000025420.7|katanin p60 subunit A-like 2 	ENSMUST00000123650.1|Katnal2|ENSMUSG00000025420.7|katanin p60 subunit A-like 2 	ENSMUST00000126153.1|Katnal2|ENSMUSG00000025420.7|katanin p60 subunit A-like 2
mm10_v2_chrX_+_36195950_36195959	4.04307	Rfx3_Rfx1_Rfx4	ENSMUST00000115257.1|Zcchc12|ENSMUSG00000036699.6|zinc finger, CCHC domain containing 12
mm10_v2_chrX_+_36195904_36195932	4.00785	Rfx3_Rfx1_Rfx4	ENSMUST00000115258.2|Zcchc12|ENSMUSG00000036699.6|zinc finger, CCHC domain containing 12
mm10_v2_chr7_-_118855984_118856014	3.89941	Rfx3_Rfx1_Rfx4	ENSMUST00000116280.2|Knop1|ENSMUSG00000030980.10|lysine rich nucleolar protein 1 	ENSMUST00000106550.3|Knop1|ENSMUSG00000030980.10|lysine rich nucleolar protein 1 	ENSMUST00000063607.5|Knop1|ENSMUSG00000030980.10|lysine rich nucleolar protein 1
mm10_v2_chrX_+_36195968_36195993	3.87755	Rfx3_Rfx1_Rfx4	ENSMUST00000115256.1|Zcchc12|ENSMUSG00000036699.6|zinc finger, CCHC domain containing 12
mm10_v2_chr1_+_191821444_191821489	3.83128	Rfx3_Rfx1_Rfx4	ENSMUST00000027931.7|Nek2|ENSMUSG00000026622.9|NIMA (never in mitosis gene a)-related expressed kinase 2
mm10_v2_chr7_+_126847908_126847962	3.82238	Rfx3_Rfx1_Rfx4	ENSMUST00000147257.1|Doc2a|ENSMUSG00000052301.8|double C2, alpha 	ENSMUST00000139174.1|Doc2a|ENSMUSG00000052301.8|double C2, alpha
mm10_v2_chr9_-_15627897_15627907	3.81319	Rfx3_Rfx1_Rfx4	ENSMUST00000045513.6|Ccdc67|ENSMUSG00000039977.10|coiled-coil domain containing 67
mm10_v2_chr9_-_98563580_98563620	3.80259	Rfx3_Rfx1_Rfx4	ENSMUST00000058992.2|4930579K19Rik|ENSMUSG00000051074.2|RIKEN cDNA 4930579K19 gene
mm10_v2_chr14_+_50944499_50944514	3.7718	Rfx3_Rfx1_Rfx4	ENSMUST00000178092.1|Pnp|ENSMUSG00000021871.11|purine-nucleoside phosphorylase
mm10_v2_chr1_+_161142661_161142701	3.73772	Rfx3_Rfx1_Rfx4	ENSMUST00000125018.1|Ankrd45|ENSMUSG00000044835.9|ankyrin repeat domain 45
mm10_v2_chr9_-_60688118_60688184	3.66731	Rfx3_Rfx1_Rfx4	ENSMUST00000114034.2|Lrrc49|ENSMUSG00000047766.9|leucine rich repeat containing 49 	ENSMUST00000065603.5|Lrrc49|ENSMUSG00000047766.9|leucine rich repeat containing 49
mm10_v2_chr9_-_61946768_61946799	3.65493	Rfx3_Rfx1_Rfx4	ENSMUST00000034815.7|Kif23|ENSMUSG00000032254.9|kinesin family member 23
mm10_v2_chr9_-_60687459_60687672	3.65012	Rfx3_Rfx1_Rfx4	ENSMUST00000114032.1|Lrrc49|ENSMUSG00000047766.9|leucine rich repeat containing 49 	ENSMUST00000166168.1|Lrrc49|ENSMUSG00000047766.9|leucine rich repeat containing 49 	ENSMUST00000132366.1|Lrrc49|ENSMUSG00000047766.9|leucine rich repeat containing 49
mm10_v2_chr5_+_124598749_124598798	3.62843	Rfx3_Rfx1_Rfx4	ENSMUST00000130912.1|Tctn2|ENSMUSG00000029386.9|tectonic family member 2 	ENSMUST00000100706.3|Tctn2|ENSMUSG00000029386.9|tectonic family member 2
mm10_v2_chr11_+_102248842_102248888	3.62554	Rfx3_Rfx1_Rfx4	ENSMUST00000100392.4|BC030867|ENSMUSG00000034773.10|cDNA sequence BC030867
mm10_v2_chr7_-_118855602_118855695	3.62441	Rfx3_Rfx1_Rfx4	ENSMUST00000106549.1|Knop1|ENSMUSG00000030980.10|lysine rich nucleolar protein 1 	ENSMUST00000126792.1|Knop1|ENSMUSG00000030980.10|lysine rich nucleolar protein 1
mm10_v2_chr5_-_142550965_142551110	3.61866	Rfx3_Rfx1_Rfx4	ENSMUST00000129212.1|Radil|ENSMUSG00000029576.11|Ras association and DIL domains 	ENSMUST00000110785.1|Radil|ENSMUSG00000029576.11|Ras association and DIL domains 	ENSMUST00000063635.8|Radil|ENSMUSG00000029576.11|Ras association and DIL domains
mm10_v2_chr9_+_110476985_110476999	3.53062	Rfx3_Rfx1_Rfx4	ENSMUST00000084948.4|Kif9|ENSMUSG00000032489.11|kinesin family member 9 	ENSMUST00000061155.6|Kif9|ENSMUSG00000032489.11|kinesin family member 9 	ENSMUST00000140686.1|Kif9|ENSMUSG00000032489.11|kinesin family member 9 	ENSMUST00000084952.5|Kif9|ENSMUSG00000032489.11|kinesin family member 9
mm10_v2_chr5_-_115300912_115300944	3.46068	Rfx3_Rfx1_Rfx4	ENSMUST00000112090.1|Dynll1|ENSMUSG00000009013.4|dynein light chain LC8-type 1
mm10_v2_chr5_-_115300957_115300999	3.45336	Rfx3_Rfx1_Rfx4	ENSMUST00000009157.3|Dynll1|ENSMUSG00000009013.4|dynein light chain LC8-type 1
mm10_v2_chr12_+_80518990_80519087	3.43401	Rfx3_Rfx1_Rfx4	ENSMUST00000021558.6|Galnt16|ENSMUSG00000021130.7|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 16
mm10_v2_chr6_-_115838412_115838412	3.38925	Rfx3_Rfx1_Rfx4	ENSMUST00000032468.5|Efcab12|ENSMUSG00000030321.9|EF-hand calcium binding domain 12 	ENSMUST00000184428.1|Efcab12|ENSMUSG00000030321.9|EF-hand calcium binding domain 12
mm10_v2_chr8_+_69832633_69832712	3.38809	Rfx3_Rfx1_Rfx4	ENSMUST00000131637.2|Pbx4|ENSMUSG00000031860.11|pre B cell leukemia homeobox 4 	ENSMUST00000081503.6|Pbx4|ENSMUSG00000031860.11|pre B cell leukemia homeobox 4
mm10_v2_chr11_+_119229092_119229131	3.33701	Rfx3_Rfx1_Rfx4	ENSMUST00000053440.7|Ccdc40|ENSMUSG00000039963.12|coiled-coil domain containing 40
mm10_v2_chr2_-_164857542_164857652	3.23084	Rfx3_Rfx1_Rfx4	ENSMUST00000109316.1|Pltp|ENSMUSG00000017754.7|phospholipid transfer protein 	ENSMUST00000156255.1|Pltp|ENSMUSG00000017754.7|phospholipid transfer protein 	ENSMUST00000128110.1|Pltp|ENSMUSG00000017754.7|phospholipid transfer protein 	ENSMUST00000109317.3|Pltp|ENSMUSG00000017754.7|phospholipid transfer protein
mm10_v2_chr10_+_42860648_42860676	3.21635	Rfx3_Rfx1_Rfx4	ENSMUST00000105495.1|Scml4|ENSMUSG00000044770.8|sex comb on midleg-like 4 (Drosophila)
mm10_v2_chr10_-_81472859_81473127	3.20008	Rfx3_Rfx1_Rfx4	ENSMUST00000147524.1|Celf5|ENSMUSG00000034818.10|CUGBP, Elav-like family member 5 	ENSMUST00000119060.1|Celf5|ENSMUSG00000034818.10|CUGBP, Elav-like family member 5
mm10_v2_chr10_+_75037066_75037100	3.15049	Rfx3_Rfx1_Rfx4	ENSMUST00000147802.1|Rab36|ENSMUSG00000020175.7|RAB36, member RAS oncogene family 	ENSMUST00000020391.5|Rab36|ENSMUSG00000020175.7|RAB36, member RAS oncogene family
mm10_v2_chr14_+_50955992_50956169	3.13904	Rfx3_Rfx1_Rfx4	ENSMUST00000095925.4|Pnp2|ENSMUSG00000068417.7|purine-nucleoside phosphorylase 2
mm10_v2_chr5_-_129008494_129008537	3.10644	Rfx3_Rfx1_Rfx4	ENSMUST00000100680.3|Stx2|ENSMUSG00000029428.7|syntaxin 2
mm10_v2_chr5_-_137046026_137046135	3.05898	Rfx3_Rfx1_Rfx4	ENSMUST00000144303.1|Ap1s1|ENSMUSG00000004849.8|adaptor protein complex AP-1, sigma 1 	ENSMUST00000111080.1|Ap1s1|ENSMUSG00000004849.8|adaptor protein complex AP-1, sigma 1
mm10_v2_chr19_+_45560569_45560644	3.04669	Rfx3_Rfx1_Rfx4	ENSMUST00000047057.7|Dpcd|ENSMUSG00000041035.7|deleted in primary ciliary dyskinesia
mm10_v2_chr7_+_3390629_3390707	3.02638	Rfx3_Rfx1_Rfx4	ENSMUST00000182222.1|Cacng8|ENSMUSG00000053395.9|calcium channel, voltage-dependent, gamma subunit 8
mm10_v2_chr6_-_124779686_124779742	3.0227	Rfx3_Rfx1_Rfx4	ENSMUST00000147669.1|Lrrc23|ENSMUSG00000030125.5|leucine rich repeat containing 23 	ENSMUST00000128697.1|Lrrc23|ENSMUSG00000030125.5|leucine rich repeat containing 23 	ENSMUST00000032218.3|Lrrc23|ENSMUSG00000030125.5|leucine rich repeat containing 23 	ENSMUST00000112475.2|Lrrc23|ENSMUSG00000030125.5|leucine rich repeat containing 23
mm10_v2_chr7_-_4546567_4546567	3.00189	Rfx3_Rfx1_Rfx4	ENSMUST00000065957.5|Syt5|ENSMUSG00000004961.6|synaptotagmin V
mm10_v2_chr17_+_85621017_85621031	2.97586	Rfx3_Rfx1_Rfx4	ENSMUST00000162695.2|Six3|ENSMUSG00000038805.9|sine oculis-related homeobox 3
mm10_v2_chr11_+_75999912_75999946	2.96827	Rfx3_Rfx1_Rfx4	ENSMUST00000066408.5|1700016K19Rik|ENSMUSG00000053783.5|RIKEN cDNA 1700016K19 gene
mm10_v2_chr5_-_129008546_129008596	2.95282	Rfx3_Rfx1_Rfx4	ENSMUST00000031378.7|Stx2|ENSMUSG00000029428.7|syntaxin 2
mm10_v2_chr4_-_117125618_117125683	2.94074	Rfx3_Rfx1_Rfx4	ENSMUST00000183310.1|Btbd19|ENSMUSG00000073771.5|BTB (POZ) domain containing 19
mm10_v2_chr8_-_40308331_40308331	2.9318	Rfx3_Rfx1_Rfx4	ENSMUST00000118639.1|Fgf20|ENSMUSG00000031603.8|fibroblast growth factor 20
mm10_v2_chr17_+_56304313_56304407	2.92568	Rfx3_Rfx1_Rfx4	ENSMUST00000113035.1|Uhrf1|ENSMUSG00000001228.8|ubiquitin-like, containing PHD and RING finger domains, 1 	ENSMUST00000113039.2|Uhrf1|ENSMUSG00000001228.8|ubiquitin-like, containing PHD and RING finger domains, 1 	ENSMUST00000142387.1|Uhrf1|ENSMUSG00000001228.8|ubiquitin-like, containing PHD and RING finger domains, 1
mm10_v2_chr13_+_55464237_55464319	2.92396	Rfx3_Rfx1_Rfx4	ENSMUST00000046533.7|Prr7|ENSMUSG00000034686.7|proline rich 7 (synaptic)
mm10_v2_chr1_+_6730051_6730117	2.92314	Rfx3_Rfx1_Rfx4	ENSMUST00000043578.6|St18|ENSMUSG00000033740.11|suppression of tumorigenicity 18 	ENSMUST00000131467.1|St18|ENSMUSG00000033740.11|suppression of tumorigenicity 18 	ENSMUST00000150761.1|St18|ENSMUSG00000033740.11|suppression of tumorigenicity 18 	ENSMUST00000151281.1|St18|ENSMUSG00000033740.11|suppression of tumorigenicity 18
mm10_v2_chr3_+_124321031_124321113	2.92196	Rfx3_Rfx1_Rfx4	ENSMUST00000058994.4|Tram1l1|ENSMUSG00000044528.4|translocation associated membrane protein 1-like 1
mm10_v2_chr4_+_86930691_86930713	2.90677	Rfx3_Rfx1_Rfx4	ENSMUST00000164590.1|Acer2|ENSMUSG00000091609.1|alkaline ceramidase 2
mm10_v2_chr1_-_87510306_87510373	2.89804	Rfx3_Rfx1_Rfx4	ENSMUST00000027477.8|Ngef|ENSMUSG00000026259.8|neuronal guanine nucleotide exchange factor
mm10_v2_chr8_+_123235086_123235096	2.87099	Rfx3_Rfx1_Rfx4	ENSMUST00000181432.1|4933417D19Rik|ENSMUSG00000097637.1|RIKEN cDNA 4933417D19 gene
mm10_v2_chr17_-_34603675_34603702	2.86857	Rfx3_Rfx1_Rfx4	ENSMUST00000015622.7|Rnf5|ENSMUSG00000015478.7|ring finger protein 5
mm10_v2_chr11_-_89302545_89302567	2.82482	Rfx3_Rfx1_Rfx4	ENSMUST00000061728.3|Nog|ENSMUSG00000048616.3|noggin
mm10_v2_chr7_+_133776857_133776942	2.80138	Rfx3_Rfx1_Rfx4	ENSMUST00000065359.5|Fank1|ENSMUSG00000053111.6|fibronectin type 3 and ankyrin repeat domains 1 	ENSMUST00000151031.1|Fank1|ENSMUSG00000053111.6|fibronectin type 3 and ankyrin repeat domains 1 	ENSMUST00000121560.1|Fank1|ENSMUSG00000053111.6|fibronectin type 3 and ankyrin repeat domains 1
mm10_v2_chr5_-_103211251_103211334	2.7795	Rfx3_Rfx1_Rfx4	ENSMUST00000060871.5|Mapk10|ENSMUSG00000046709.10|mitogen-activated protein kinase 10 	ENSMUST00000112846.1|Mapk10|ENSMUSG00000046709.10|mitogen-activated protein kinase 10 	ENSMUST00000170792.1|Mapk10|ENSMUSG00000046709.10|mitogen-activated protein kinase 10 	ENSMUST00000112847.2|Mapk10|ENSMUSG00000046709.10|mitogen-activated protein kinase 10
mm10_v2_chr5_-_45856496_45856552	2.77477	Rfx3_Rfx1_Rfx4	ENSMUST00000087164.3|Lcorl|ENSMUSG00000015882.11|ligand dependent nuclear receptor corepressor-like 	ENSMUST00000121573.1|Lcorl|ENSMUSG00000015882.11|ligand dependent nuclear receptor corepressor-like
mm10_v2_chr11_+_87760533_87760587	2.71898	Rfx3_Rfx1_Rfx4	ENSMUST00000039627.5|Bzrap1|ENSMUSG00000034156.10|benzodiazepine receptor associated protein 1 	ENSMUST00000100644.3|Bzrap1|ENSMUSG00000034156.10|benzodiazepine receptor associated protein 1
mm10_v2_chr7_+_45785331_45785390	2.67241	Rfx3_Rfx1_Rfx4	ENSMUST00000120005.1|Lmtk3|ENSMUSG00000062044.7|lemur tyrosine kinase 3 	ENSMUST00000123585.1|Lmtk3|ENSMUSG00000062044.7|lemur tyrosine kinase 3
mm10_v2_chr15_-_103215285_103215366	2.64702	Rfx3_Rfx1_Rfx4	ENSMUST00000122182.1|Cbx5|ENSMUSG00000009575.8|chromobox 5 	ENSMUST00000108813.3|Cbx5|ENSMUSG00000009575.8|chromobox 5 	ENSMUST00000127191.1|Cbx5|ENSMUSG00000009575.8|chromobox 5
mm10_v2_chr19_-_10457447_10457557	2.60984	Rfx3_Rfx1_Rfx4	ENSMUST00000171400.2|Lrrc10b|ENSMUSG00000090291.2|leucine rich repeat containing 10B
mm10_v2_chr16_-_33056174_33056218	2.60852	Rfx3_Rfx1_Rfx4	ENSMUST00000115100.1|Iqcg|ENSMUSG00000035578.9|IQ motif containing G 	ENSMUST00000040309.8|Iqcg|ENSMUSG00000035578.9|IQ motif containing G
mm10_v2_chr4_+_128654686_128654738	2.60776	Rfx3_Rfx1_Rfx4	ENSMUST00000030588.6|Phc2|ENSMUSG00000028796.11|polyhomeotic-like 2 (Drosophila) 	ENSMUST00000136377.1|Phc2|ENSMUSG00000028796.11|polyhomeotic-like 2 (Drosophila)
mm10_v2_chrX_-_102071188_102071204	2.60607	Rfx3_Rfx1_Rfx4	ENSMUST00000113631.1|Rgag4|ENSMUSG00000049191.6|retrotransposon gag domain containing 4
mm10_v2_chr9_+_47530173_47530373	2.59607	Rfx3_Rfx1_Rfx4	ENSMUST00000114548.1|Cadm1|ENSMUSG00000032076.12|cell adhesion molecule 1 	ENSMUST00000152459.1|Cadm1|ENSMUSG00000032076.12|cell adhesion molecule 1 	ENSMUST00000143026.1|Cadm1|ENSMUSG00000032076.12|cell adhesion molecule 1 	ENSMUST00000085909.2|Cadm1|ENSMUSG00000032076.12|cell adhesion molecule 1 	ENSMUST00000114547.1|Cadm1|ENSMUSG00000032076.12|cell adhesion molecule 1 	ENSMUST00000034581.3|Cadm1|ENSMUSG00000032076.12|cell adhesion molecule 1
mm10_v2_chr11_-_76468396_76468473	2.55333	Rfx3_Rfx1_Rfx4	ENSMUST00000065028.7|Abr|ENSMUSG00000017631.12|active BCR-related gene
mm10_v2_chr4_-_125065603_125065703	2.55112	Rfx3_Rfx1_Rfx4	ENSMUST00000036383.3|Dnali1|ENSMUSG00000042707.6|dynein, axonemal, light intermediate polypeptide 1
mm10_v2_chr8_+_45627709_45627803	2.54982	Rfx3_Rfx1_Rfx4	ENSMUST00000134321.1|Sorbs2|ENSMUSG00000031626.10|sorbin and SH3 domain containing 2 	ENSMUST00000135336.1|Sorbs2|ENSMUSG00000031626.10|sorbin and SH3 domain containing 2
mm10_v2_chr19_+_5041337_5041416	2.54749	Rfx3_Rfx1_Rfx4	ENSMUST00000116567.2|Brms1|ENSMUSG00000080268.3|breast cancer metastasis-suppressor 1
mm10_v2_chr1_+_6730135_6730176	2.5024	Rfx3_Rfx1_Rfx4	ENSMUST00000155921.1|St18|ENSMUSG00000033740.11|suppression of tumorigenicity 18
mm10_v2_chr8_+_95055094_95055126	2.49404	Rfx3_Rfx1_Rfx4	ENSMUST00000058479.6|Ccdc135|ENSMUSG00000031786.6|coiled-coil domain containing 135
mm10_v2_chr17_+_12119274_12119348	2.4813	Rfx3_Rfx1_Rfx4	ENSMUST00000024594.2|Agpat4|ENSMUSG00000023827.2|1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)
mm10_v2_chr7_+_4740111_4740120	2.44775	Rfx3_Rfx1_Rfx4	ENSMUST00000098853.2|Suv420h2|ENSMUSG00000059851.9|suppressor of variegation 4-20 homolog 2 (Drosophila)
mm10_v2_chr9_+_107547288_107547379	2.44093	Rfx3_Rfx1_Rfx4	ENSMUST00000010188.7|Zmynd10|ENSMUSG00000010044.7|zinc finger, MYND domain containing 10
mm10_v2_chr9_-_70141484_70141578	2.44002	Rfx3_Rfx1_Rfx4	ENSMUST00000034749.8|Fam81a|ENSMUSG00000032224.8|family with sequence similarity 81, member A
mm10_v2_chr4_-_43653560_43653594	2.40328	Rfx3_Rfx1_Rfx4	ENSMUST00000107870.2|Spag8|ENSMUSG00000066196.5|sperm associated antigen 8
mm10_v2_chr9_-_15627910_15627933	2.38596	Rfx3_Rfx1_Rfx4	ENSMUST00000152377.1|Ccdc67|ENSMUSG00000039977.10|coiled-coil domain containing 67 	ENSMUST00000115593.3|Ccdc67|ENSMUSG00000039977.10|coiled-coil domain containing 67
mm10_v2_chr1_+_75521521_75521602	2.3702	Rfx3_Rfx1_Rfx4	ENSMUST00000027414.9|Stk11ip|ENSMUSG00000026213.9|serine/threonine kinase 11 interacting protein 	ENSMUST00000113553.1|Stk11ip|ENSMUSG00000026213.9|serine/threonine kinase 11 interacting protein
mm10_v2_chr4_+_109343029_109343081	2.36599	Rfx3_Rfx1_Rfx4	ENSMUST00000030281.5|Eps15|ENSMUSG00000028552.7|epidermal growth factor receptor pathway substrate 15
mm10_v2_chr7_+_4740137_4740175	2.36155	Rfx3_Rfx1_Rfx4	ENSMUST00000130215.1|Suv420h2|ENSMUSG00000059851.9|suppressor of variegation 4-20 homolog 2 (Drosophila) 	ENSMUST00000108582.3|Suv420h2|ENSMUSG00000059851.9|suppressor of variegation 4-20 homolog 2 (Drosophila)
mm10_v2_chr4_-_43653542_43653557	2.34984	Rfx3_Rfx1_Rfx4	ENSMUST00000084646.4|Spag8|ENSMUSG00000066196.5|sperm associated antigen 8
mm10_v2_chr7_+_4740178_4740206	2.34782	Rfx3_Rfx1_Rfx4	ENSMUST00000108583.2|Suv420h2|ENSMUSG00000059851.9|suppressor of variegation 4-20 homolog 2 (Drosophila)
mm10_v2_chr2_-_164857671_164857711	2.3329	Rfx3_Rfx1_Rfx4	ENSMUST00000059954.7|Pltp|ENSMUSG00000017754.7|phospholipid transfer protein
mm10_v2_chr7_+_139212974_139212993	2.32624	Rfx3_Rfx1_Rfx4	ENSMUST00000016124.8|Lrrc27|ENSMUSG00000015980.8|leucine rich repeat containing 27
mm10_v2_chr18_+_23803962_23804054	2.31868	Rfx3_Rfx1_Rfx4	ENSMUST00000025127.3|Mapre2|ENSMUSG00000024277.8|microtubule-associated protein, RP/EB family, member 2
mm10_v2_chr3_-_89245005_89245031	2.31215	Rfx3_Rfx1_Rfx4	ENSMUST00000107464.1|Trim46|ENSMUSG00000042766.11|tripartite motif-containing 46
mm10_v2_chr4_+_129960760_129960808	2.2938	Rfx3_Rfx1_Rfx4	ENSMUST00000139884.1|1700003M07Rik|ENSMUSG00000085389.1|RIKEN cDNA 1700003M07 gene
mm10_v2_chr17_+_80290206_80290279	2.28347	Rfx3_Rfx1_Rfx4	ENSMUST00000061703.9|Morn2|ENSMUSG00000045257.9|MORN repeat containing 2
mm10_v2_chrX_-_136993027_136993089	2.25762	Rfx3_Rfx1_Rfx4	ENSMUST00000171738.1|Slc25a53|ENSMUSG00000044348.8|solute carrier family 25, member 53 	ENSMUST00000056674.5|Slc25a53|ENSMUSG00000044348.8|solute carrier family 25, member 53 	ENSMUST00000129807.1|Slc25a53|ENSMUSG00000044348.8|solute carrier family 25, member 53
mm10_v2_chr12_+_72441852_72441866	2.24582	Rfx3_Rfx1_Rfx4	ENSMUST00000162159.1|Lrrc9|ENSMUSG00000021090.9|leucine rich repeat containing 9
mm10_v2_chr13_+_91461050_91461125	2.21942	Rfx3_Rfx1_Rfx4	ENSMUST00000004094.8|Ssbp2|ENSMUSG00000003992.8|single-stranded DNA binding protein 2 	ENSMUST00000042122.8|Ssbp2|ENSMUSG00000003992.8|single-stranded DNA binding protein 2
mm10_v2_chr5_-_115652974_115652992	2.20205	Rfx3_Rfx1_Rfx4	ENSMUST00000121746.1|Ccdc64|ENSMUSG00000041609.10|coiled-coil domain containing 64 	ENSMUST00000118576.1|Ccdc64|ENSMUSG00000041609.10|coiled-coil domain containing 64
mm10_v2_chr11_-_3895085_3895104	2.19982	Rfx3_Rfx1_Rfx4	ENSMUST00000020712.4|4921536K21Rik|ENSMUSG00000020434.4|RIKEN cDNA 4921536K21 gene
mm10_v2_chr2_+_152962485_152962510	2.19039	Rfx3_Rfx1_Rfx4	ENSMUST00000099197.2|Ttll9|ENSMUSG00000074673.9|tubulin tyrosine ligase-like family, member 9 	ENSMUST00000103155.3|Ttll9|ENSMUSG00000074673.9|tubulin tyrosine ligase-like family, member 9
mm10_v2_chr3_-_89245159_89245199	2.1714	Rfx3_Rfx1_Rfx4	ENSMUST00000090924.6|Trim46|ENSMUSG00000042766.11|tripartite motif-containing 46
mm10_v2_chr2_+_109280738_109280798	2.15022	Rfx3_Rfx1_Rfx4	ENSMUST00000028527.7|Kif18a|ENSMUSG00000027115.8|kinesin family member 18A
mm10_v2_chr8_+_13705884_13705952	2.14667	Rfx3_Rfx1_Rfx4	ENSMUST00000166277.1|4932443I19Rik|ENSMUSG00000090336.1|RIKEN cDNA 4932443I19 gene
mm10_v2_chr11_-_72361837_72361899	2.14233	Rfx3_Rfx1_Rfx4	ENSMUST00000108503.2|Tekt1|ENSMUSG00000020799.10|tektin 1
mm10_v2_chr4_+_123183456_123183601	2.13519	Rfx3_Rfx1_Rfx4	ENSMUST00000126995.1|Hpcal4|ENSMUSG00000046093.3|hippocalcin-like 4
mm10_v2_chr8_-_27202542_27202557	2.13147	Rfx3_Rfx1_Rfx4	ENSMUST00000038174.6|Got1l1|ENSMUSG00000039720.6|glutamic-oxaloacetic transaminase 1-like 1
mm10_v2_chr2_-_131160006_131160081	2.09088	Rfx3_Rfx1_Rfx4	ENSMUST00000103188.3|1700037H04Rik|ENSMUSG00000027327.10|RIKEN cDNA 1700037H04 gene 	ENSMUST00000133602.1|1700037H04Rik|ENSMUSG00000027327.10|RIKEN cDNA 1700037H04 gene 	ENSMUST00000028800.5|1700037H04Rik|ENSMUSG00000027327.10|RIKEN cDNA 1700037H04 gene
mm10_v2_chr1_-_60043087_60043175	2.09057	Rfx3_Rfx1_Rfx4	ENSMUST00000027172.6|Ica1l|ENSMUSG00000026018.6|islet cell autoantigen 1-like
mm10_v2_chr3_-_89214378_89214430	2.07544	Rfx3_Rfx1_Rfx4	ENSMUST00000073572.4|Mtx1|ENSMUSG00000064068.7|metaxin 1
mm10_v2_chr8_+_95534078_95534123	2.07435	Rfx3_Rfx1_Rfx4	ENSMUST00000041569.3|Ccdc113|ENSMUSG00000036598.3|coiled-coil domain containing 113
mm10_v2_chr16_+_32099904_32099973	2.07118	Rfx3_Rfx1_Rfx4	ENSMUST00000042869.6|Cep19|ENSMUSG00000035790.9|centrosomal protein 19
mm10_v2_chr16_+_32099781_32099857	2.06705	Rfx3_Rfx1_Rfx4	ENSMUST00000115168.2|Cep19|ENSMUSG00000035790.9|centrosomal protein 19
mm10_v2_chr11_-_77725281_77725294	2.05872	Rfx3_Rfx1_Rfx4	ENSMUST00000078623.4|Cryba1|ENSMUSG00000000724.10|crystallin, beta A1
mm10_v2_chr7_-_118705708_118705786	2.05385	Rfx3_Rfx1_Rfx4	ENSMUST00000038791.8|Gde1|ENSMUSG00000033917.8|glycerophosphodiester phosphodiesterase 1
mm10_v2_chr8_+_123212857_123212911	2.0479	Rfx3_Rfx1_Rfx4	ENSMUST00000060133.6|Spata33|ENSMUSG00000048478.6|spermatogenesis associated 33
mm10_v2_chr5_-_114813943_114813976	2.0416	Rfx3_Rfx1_Rfx4	ENSMUST00000061251.5|1500011B03Rik|ENSMUSG00000072694.7|RIKEN cDNA 1500011B03 gene 	ENSMUST00000112160.3|1500011B03Rik|ENSMUSG00000072694.7|RIKEN cDNA 1500011B03 gene
mm10_v2_chr17_+_35049966_35049966	2.03831	Rfx3_Rfx1_Rfx4	ENSMUST00000007257.9|Clic1|ENSMUSG00000007041.9|chloride intracellular channel 1
mm10_v2_chr15_+_79141324_79141358	2.03494	Rfx3_Rfx1_Rfx4	ENSMUST00000040077.6|Polr2f|ENSMUSG00000033020.6|polymerase (RNA) II (DNA directed) polypeptide F
mm10_v2_chr12_+_52699297_52699411	2.01614	Rfx3_Rfx1_Rfx4	ENSMUST00000095737.3|Akap6|ENSMUSG00000061603.7|A kinase (PRKA) anchor protein 6
mm10_v2_chr19_-_46327121_46327156	2.01511	Rfx3_Rfx1_Rfx4	ENSMUST00000041391.4|Psd|ENSMUSG00000037126.9|pleckstrin and Sec7 domain containing 	ENSMUST00000096029.5|Psd|ENSMUSG00000037126.9|pleckstrin and Sec7 domain containing
mm10_v2_chr13_-_100775844_100775899	2.00661	Rfx3_Rfx1_Rfx4	ENSMUST00000075550.3|Cenph|ENSMUSG00000045273.8|centromere protein H
mm10_v2_chr6_+_117906755_117906801	1.98852	Rfx3_Rfx1_Rfx4	ENSMUST00000170346.1|Hnrnpf|ENSMUSG00000042079.7|heterogeneous nuclear ribonucleoprotein F 	ENSMUST00000179224.1|Hnrnpf|ENSMUSG00000042079.7|heterogeneous nuclear ribonucleoprotein F 	ENSMUST00000035493.7|Hnrnpf|ENSMUSG00000042079.7|heterogeneous nuclear ribonucleoprotein F
mm10_v2_chr12_+_72441933_72441970	1.97055	Rfx3_Rfx1_Rfx4	ENSMUST00000161284.1|Lrrc9|ENSMUSG00000021090.9|leucine rich repeat containing 9
mm10_v2_chr10_+_39133981_39134031	1.96907	Rfx3_Rfx1_Rfx4	ENSMUST00000019991.7|Tube1|ENSMUSG00000019845.7|epsilon-tubulin 1
mm10_v2_chr2_-_121271403_121271410	1.95665	Rfx3_Rfx1_Rfx4	ENSMUST00000110648.1|Trp53bp1|ENSMUSG00000043909.10|transformation related protein 53 binding protein 1
mm10_v2_chr4_+_105790534_105790534	1.95638	Rfx3_Rfx1_Rfx4	ENSMUST00000185012.1|Gm12728|ENSMUSG00000083780.2|predicted gene 12728
mm10_v2_chr15_-_98953541_98953560	1.94537	Rfx3_Rfx1_Rfx4	ENSMUST00000097014.5|Tuba1a|ENSMUSG00000072235.5|tubulin, alpha 1A
mm10_v2_chr3_+_90079540_90079715	1.9403	Rfx3_Rfx1_Rfx4	ENSMUST00000029549.9|Tpm3|ENSMUSG00000027940.12|tropomyosin 3, gamma 	ENSMUST00000118566.1|Tpm3|ENSMUSG00000027940.12|tropomyosin 3, gamma 	ENSMUST00000119158.1|Tpm3|ENSMUSG00000027940.12|tropomyosin 3, gamma
mm10_v2_chr10_-_13868932_13869004	1.9202	Rfx3_Rfx1_Rfx4	ENSMUST00000019942.5|Aig1|ENSMUSG00000019806.7|androgen-induced 1 	ENSMUST00000162610.1|Aig1|ENSMUSG00000019806.7|androgen-induced 1
mm10_v2_chr7_+_16738410_16738476	1.91993	Rfx3_Rfx1_Rfx4	ENSMUST00000086112.6|Ap2s1|ENSMUSG00000008036.10|adaptor-related protein complex 2, sigma 1 subunit
mm10_v2_chr6_+_83156401_83156451	1.91028	Rfx3_Rfx1_Rfx4	ENSMUST00000032106.4|1700003E16Rik|ENSMUSG00000030030.4|RIKEN cDNA 1700003E16 gene
mm10_v2_chr2_-_121271341_121271397	1.90335	Rfx3_Rfx1_Rfx4	ENSMUST00000110647.1|Trp53bp1|ENSMUSG00000043909.10|transformation related protein 53 binding protein 1
mm10_v2_chr17_+_46254017_46254165	1.90222	Rfx3_Rfx1_Rfx4	ENSMUST00000095262.4|Lrrc73|ENSMUSG00000071073.4|leucine rich repeat containing 73
mm10_v2_chr16_-_59639124_59639191	1.88889	Rfx3_Rfx1_Rfx4	ENSMUST00000149797.1|Arl6|ENSMUSG00000022722.12|ADP-ribosylation factor-like 6 	ENSMUST00000023405.9|Arl6|ENSMUSG00000022722.12|ADP-ribosylation factor-like 6
mm10_v2_chr11_+_72207537_72207620	1.87355	Rfx3_Rfx1_Rfx4	ENSMUST00000021158.3|Txndc17|ENSMUSG00000020803.3|thioredoxin domain containing 17
mm10_v2_chr15_+_81663889_81663958	1.86826	Rfx3_Rfx1_Rfx4	ENSMUST00000023029.8|L3mbtl2|ENSMUSG00000022394.8|l(3)mbt-like 2 (Drosophila) 	ENSMUST00000174229.1|L3mbtl2|ENSMUSG00000022394.8|l(3)mbt-like 2 (Drosophila) 	ENSMUST00000172748.1|L3mbtl2|ENSMUSG00000022394.8|l(3)mbt-like 2 (Drosophila)
mm10_v2_chr17_-_87446854_87446935	1.85028	Rfx3_Rfx1_Rfx4	ENSMUST00000040440.6|Calm2|ENSMUSG00000036438.6|calmodulin 2
mm10_v2_chr18_-_43687695_43687773	1.84955	Rfx3_Rfx1_Rfx4	ENSMUST00000082254.6|Jakmip2|ENSMUSG00000024502.9|janus kinase and microtubule interacting protein 2
mm10_v2_chr15_-_79062866_79062941	1.84791	Rfx3_Rfx1_Rfx4	ENSMUST00000151889.1|Ankrd54|ENSMUSG00000033055.4|ankyrin repeat domain 54 	ENSMUST00000040676.4|Ankrd54|ENSMUSG00000033055.4|ankyrin repeat domain 54
mm10_v2_chr7_+_116504363_116504397	1.83915	Rfx3_Rfx1_Rfx4	ENSMUST00000032895.8|Nucb2|ENSMUSG00000030659.8|nucleobindin 2
mm10_v2_chr9_+_122951051_122951106	1.83332	Rfx3_Rfx1_Rfx4	ENSMUST00000040717.5|Kif15|ENSMUSG00000036768.5|kinesin family member 15
mm10_v2_chr2_-_121271315_121271322	1.83154	Rfx3_Rfx1_Rfx4	ENSMUST00000131245.1|Trp53bp1|ENSMUSG00000043909.10|transformation related protein 53 binding protein 1
mm10_v2_chr11_+_46235460_46235531	1.82956	Rfx3_Rfx1_Rfx4	ENSMUST00000060185.2|Fndc9|ENSMUSG00000048721.2|fibronectin type III domain containing 9
mm10_v2_chr18_-_12305638_12305720	1.82725	Rfx3_Rfx1_Rfx4	ENSMUST00000122408.1|Ankrd29|ENSMUSG00000057766.7|ankyrin repeat domain 29 	ENSMUST00000118525.1|Ankrd29|ENSMUSG00000057766.7|ankyrin repeat domain 29 	ENSMUST00000142066.1|Ankrd29|ENSMUSG00000057766.7|ankyrin repeat domain 29
mm10_v2_chr2_+_167932327_167932379	1.81354	Rfx3_Rfx1_Rfx4	ENSMUST00000029053.7|Ptpn1|ENSMUSG00000027540.7|protein tyrosine phosphatase, non-receptor type 1
mm10_v2_chr1_+_187215737_187215748	1.81337	Rfx3_Rfx1_Rfx4	ENSMUST00000160471.1|Gpatch2|ENSMUSG00000039210.10|G patch domain containing 2
mm10_v2_chr11_-_59839828_59839843	1.80613	Rfx3_Rfx1_Rfx4	ENSMUST00000019517.3|Cops3|ENSMUSG00000019373.5|COP9 (constitutive photomorphogenic) homolog, subunit 3 (Arabidopsis thaliana)
mm10_v2_chr2_+_118663235_118663309	1.78337	Rfx3_Rfx1_Rfx4	ENSMUST00000099557.3|Pak6|ENSMUSG00000074923.4|p21 protein (Cdc42/Rac)-activated kinase 6
mm10_v2_chr19_+_5050807_5050858	1.76621	Rfx3_Rfx1_Rfx4	ENSMUST00000025818.6|Rin1|ENSMUSG00000024883.6|Ras and Rab interactor 1
mm10_v2_chr10_+_83722865_83722947	1.762	Rfx3_Rfx1_Rfx4	ENSMUST00000150459.1|1500009L16Rik|ENSMUSG00000087651.2|RIKEN cDNA 1500009L16 gene
mm10_v2_chr5_+_149439706_149439721	1.75203	Rfx3_Rfx1_Rfx4	ENSMUST00000031667.4|Tex26|ENSMUSG00000029660.7|testis expressed 26
mm10_v2_chr3_+_103968588_103968661	1.75181	Rfx3_Rfx1_Rfx4	ENSMUST00000156262.1|Phtf1|ENSMUSG00000058388.8|putative homeodomain transcription factor 1
mm10_v2_chr2_-_134644019_134644042	1.75175	Rfx3_Rfx1_Rfx4	ENSMUST00000110120.1|Tmx4|ENSMUSG00000034723.5|thioredoxin-related transmembrane protein 4
mm10_v2_chr7_+_116504409_116504430	1.73364	Rfx3_Rfx1_Rfx4	ENSMUST00000183175.1|Nucb2|ENSMUSG00000030659.8|nucleobindin 2
mm10_v2_chr5_+_135632618_135632647	1.72729	Rfx3_Rfx1_Rfx4	ENSMUST00000043707.6|Rhbdd2|ENSMUSG00000039917.6|rhomboid domain containing 2
mm10_v2_chrX_-_51205773_51205839	1.7171	Rfx3_Rfx1_Rfx4	ENSMUST00000114875.1|Mbnl3|ENSMUSG00000036109.11|muscleblind-like 3 (Drosophila)
mm10_v2_chr12_-_86726439_86726475	1.71601	Rfx3_Rfx1_Rfx4	ENSMUST00000021682.8|Angel1|ENSMUSG00000021257.8|angel homolog 1 (Drosophila)
mm10_v2_chr15_-_76126538_76126556	1.68713	Rfx3_Rfx1_Rfx4	ENSMUST00000054022.5|BC024139|ENSMUSG00000044361.9|cDNA sequence BC024139 	ENSMUST00000089654.3|BC024139|ENSMUSG00000044361.9|cDNA sequence BC024139
mm10_v2_chr10_-_13868779_13868874	1.67846	Rfx3_Rfx1_Rfx4	ENSMUST00000105534.3|Aig1|ENSMUSG00000019806.7|androgen-induced 1
mm10_v2_chr2_-_118703963_118703963	1.67207	Rfx3_Rfx1_Rfx4	ENSMUST00000104937.1|Ankrd63|ENSMUSG00000078137.1|ankyrin repeat domain 63
mm10_v2_chr9_-_22002599_22002640	1.65418	Rfx3_Rfx1_Rfx4	ENSMUST00000115336.2|Ccdc151|ENSMUSG00000039632.6|coiled-coil domain containing 151 	ENSMUST00000044926.5|Ccdc151|ENSMUSG00000039632.6|coiled-coil domain containing 151
mm10_v2_chr2_+_36049453_36049507	1.65258	Rfx3_Rfx1_Rfx4	ENSMUST00000028256.4|Morn5|ENSMUSG00000026894.4|MORN repeat containing 5
mm10_v2_chr13_-_49309217_49309257	1.63664	Rfx3_Rfx1_Rfx4	ENSMUST00000110087.2|Fgd3|ENSMUSG00000037946.5|FYVE, RhoGEF and PH domain containing 3
mm10_v2_chr5_+_111581422_111581422	1.63434	Rfx3_Rfx1_Rfx4	ENSMUST00000064930.3|C130026L21Rik|ENSMUSG00000052848.3|RIKEN cDNA C130026L21 gene
mm10_v2_chr6_+_117906809_117906863	1.63405	Rfx3_Rfx1_Rfx4	ENSMUST00000177918.1|Hnrnpf|ENSMUSG00000042079.7|heterogeneous nuclear ribonucleoprotein F 	ENSMUST00000163168.2|Hnrnpf|ENSMUSG00000042079.7|heterogeneous nuclear ribonucleoprotein F
mm10_v2_chr11_-_69413675_69413675	1.63315	Rfx3_Rfx1_Rfx4	ENSMUST00000094077.4|Kdm6b|ENSMUSG00000018476.7|KDM1 lysine (K)-specific demethylase 6B
mm10_v2_chr8_+_36993551_36993611	1.62592	Rfx3_Rfx1_Rfx4	ENSMUST00000098825.3|AI429214|ENSMUSG00000074384.3|expressed sequence AI429214
mm10_v2_chr7_-_118856254_118856373	1.62459	Rfx3_Rfx1_Rfx4	ENSMUST00000033277.7|Knop1|ENSMUSG00000030980.10|lysine rich nucleolar protein 1
mm10_v2_chr8_+_45627946_45627975	1.6221	Rfx3_Rfx1_Rfx4	ENSMUST00000145458.1|Sorbs2|ENSMUSG00000031626.10|sorbin and SH3 domain containing 2
mm10_v2_chr5_+_33983534_33983548	1.61778	Rfx3_Rfx1_Rfx4	ENSMUST00000114382.1|Gm1673|ENSMUSG00000070858.5|predicted gene 1673
mm10_v2_chr6_+_119479668_119479795	1.60753	Rfx3_Rfx1_Rfx4	ENSMUST00000032094.5|Fbxl14|ENSMUSG00000030019.5|F-box and leucine-rich repeat protein 14
mm10_v2_chr7_-_44375006_44375035	1.60593	Rfx3_Rfx1_Rfx4	ENSMUST00000107933.1|1700008O03Rik|ENSMUSG00000008028.9|RIKEN cDNA 1700008O03 gene
mm10_v2_chr6_-_77979652_77979708	1.60561	Rfx3_Rfx1_Rfx4	ENSMUST00000161846.1|Ctnna2|ENSMUSG00000063063.6|catenin (cadherin associated protein), alpha 2 	ENSMUST00000160894.1|Ctnna2|ENSMUSG00000063063.6|catenin (cadherin associated protein), alpha 2
mm10_v2_chrX_+_136590841_136590866	1.6026	Rfx3_Rfx1_Rfx4	ENSMUST00000138047.1|Tceal3|ENSMUSG00000044550.5|transcription elongation factor A (SII)-like 3 	ENSMUST00000145648.1|Tceal3|ENSMUSG00000044550.5|transcription elongation factor A (SII)-like 3
mm10_v2_chr2_+_163658370_163658510	1.58796	Rfx3_Rfx1_Rfx4	ENSMUST00000164399.1|Pkig|ENSMUSG00000035268.8|protein kinase inhibitor, gamma 	ENSMUST00000064703.6|Pkig|ENSMUSG00000035268.8|protein kinase inhibitor, gamma 	ENSMUST00000099105.2|Pkig|ENSMUSG00000035268.8|protein kinase inhibitor, gamma 	ENSMUST00000152418.1|Pkig|ENSMUSG00000035268.8|protein kinase inhibitor, gamma 	ENSMUST00000126182.1|Pkig|ENSMUSG00000035268.8|protein kinase inhibitor, gamma 	ENSMUST00000131228.1|Pkig|ENSMUSG00000035268.8|protein kinase inhibitor, gamma
mm10_v2_chr19_-_23652780_23652820	1.56594	Rfx3_Rfx1_Rfx4	ENSMUST00000035849.3|1700028P14Rik|ENSMUSG00000033053.3|RIKEN cDNA 1700028P14 gene
mm10_v2_chr9_+_59578192_59578337	1.56521	Rfx3_Rfx1_Rfx4	ENSMUST00000118549.1|Celf6|ENSMUSG00000032297.5|CUGBP, Elav-like family member 6 	ENSMUST00000034840.3|Celf6|ENSMUSG00000032297.5|CUGBP, Elav-like family member 6
mm10_v2_chr8_-_64733534_64733554	1.56271	Rfx3_Rfx1_Rfx4	ENSMUST00000141021.1|Sc4mol|ENSMUSG00000031604.4|sterol-C4-methyl oxidase-like
mm10_v2_chr15_+_54745702_54745702	1.55737	Rfx3_Rfx1_Rfx4	ENSMUST00000050027.8|Nov|ENSMUSG00000037362.8|nephroblastoma overexpressed gene
mm10_v2_chr5_-_136986829_136986901	1.55085	Rfx3_Rfx1_Rfx4	ENSMUST00000034953.7|Znhit1|ENSMUSG00000059518.8|zinc finger, HIT domain containing 1 	ENSMUST00000085941.5|Znhit1|ENSMUSG00000059518.8|zinc finger, HIT domain containing 1
mm10_v2_chr1_+_187215501_187215547	1.54333	Rfx3_Rfx1_Rfx4	ENSMUST00000097443.3|Gpatch2|ENSMUSG00000039210.10|G patch domain containing 2 	ENSMUST00000065573.7|Gpatch2|ENSMUSG00000039210.10|G patch domain containing 2 	ENSMUST00000110943.2|Gpatch2|ENSMUSG00000039210.10|G patch domain containing 2 	ENSMUST00000044812.5|Gpatch2|ENSMUSG00000039210.10|G patch domain containing 2
mm10_v2_chr8_+_94666722_94666769	1.54104	Rfx3_Rfx1_Rfx4	ENSMUST00000034228.8|Arl2bp|ENSMUSG00000031776.10|ADP-ribosylation factor-like 2 binding protein
mm10_v2_chr5_+_136908130_136908174	1.53704	Rfx3_Rfx1_Rfx4	ENSMUST00000008131.8|Rabl5|ENSMUSG00000007987.8|RAB, member of RAS oncogene family-like 5
mm10_v2_chr8_-_119575143_119575205	1.53587	Rfx3_Rfx1_Rfx4	ENSMUST00000036049.4|Hsdl1|ENSMUSG00000034189.4|hydroxysteroid dehydrogenase like 1
mm10_v2_chr4_+_152338619_152338709	1.53543	Rfx3_Rfx1_Rfx4	ENSMUST00000030775.5|Chd5|ENSMUSG00000005045.10|chromodomain helicase DNA binding protein 5 	ENSMUST00000164662.1|Chd5|ENSMUSG00000005045.10|chromodomain helicase DNA binding protein 5
mm10_v2_chr13_-_49320219_49320311	1.51531	Rfx3_Rfx1_Rfx4	ENSMUST00000110086.1|Fgd3|ENSMUSG00000037946.5|FYVE, RhoGEF and PH domain containing 3
mm10_v2_chr19_-_10556198_10556275	1.51411	Rfx3_Rfx1_Rfx4	ENSMUST00000025569.2|Tmem216|ENSMUSG00000024667.5|transmembrane protein 216
mm10_v2_chr17_+_84626458_84626512	1.50454	Rfx3_Rfx1_Rfx4	ENSMUST00000025101.8|Dync2li1|ENSMUSG00000024253.8|dynein cytoplasmic 2 light intermediate chain 1
mm10_v2_chr17_+_34604262_34604304	1.48908	Rfx3_Rfx1_Rfx4	ENSMUST00000174041.1|Agpat1|ENSMUSG00000034254.11|1-acylglycerol-3-phosphate O-acyltransferase 1 (lysophosphatidic acid acyltransferase, alpha)
mm10_v2_chr2_+_110017806_110017873	1.48528	Rfx3_Rfx1_Rfx4	ENSMUST00000028580.5|Ccdc34|ENSMUSG00000027160.10|coiled-coil domain containing 34
mm10_v2_chr8_-_78821136_78821143	1.4834	Rfx3_Rfx1_Rfx4	ENSMUST00000130325.1|Lsm6|ENSMUSG00000031683.10|LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae) 	ENSMUST00000051867.6|Lsm6|ENSMUSG00000031683.10|LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)
mm10_v2_chr11_+_108425192_108425304	1.4732	Rfx3_Rfx1_Rfx4	ENSMUST00000150863.2|Cep112|ENSMUSG00000020728.11|centrosomal protein 112 	ENSMUST00000061287.5|Cep112|ENSMUSG00000020728.11|centrosomal protein 112 	ENSMUST00000149683.2|Cep112|ENSMUSG00000020728.11|centrosomal protein 112
mm10_v2_chr9_-_29412204_29412277	1.46986	Rfx3_Rfx1_Rfx4	ENSMUST00000115237.1|Ntm|ENSMUSG00000059974.4|neurotrimin
mm10_v2_chr10_+_75037291_75037332	1.46012	Rfx3_Rfx1_Rfx4	ENSMUST00000139384.1|Rab36|ENSMUSG00000020175.7|RAB36, member RAS oncogene family
mm10_v2_chr4_-_138725262_138725267	1.43712	Rfx3_Rfx1_Rfx4	ENSMUST00000105811.2|Ubxn10|ENSMUSG00000043621.7|UBX domain protein 10
mm10_v2_chr5_+_33983437_33983529	1.43067	Rfx3_Rfx1_Rfx4	ENSMUST00000114384.1|Gm1673|ENSMUSG00000070858.5|predicted gene 1673 	ENSMUST00000094869.5|Gm1673|ENSMUSG00000070858.5|predicted gene 1673 	ENSMUST00000114383.1|Gm1673|ENSMUSG00000070858.5|predicted gene 1673
mm10_v2_chr19_+_6061176_6061235	1.42342	Rfx3_Rfx1_Rfx4	ENSMUST00000162726.3|Znhit2|ENSMUSG00000075227.5|zinc finger, HIT domain containing 2
mm10_v2_chr7_+_139213239_139213304	1.4192	Rfx3_Rfx1_Rfx4	ENSMUST00000106104.1|Lrrc27|ENSMUSG00000015980.8|leucine rich repeat containing 27
mm10_v2_chr7_-_4684963_4684997	1.41592	Rfx3_Rfx1_Rfx4	ENSMUST00000079970.4|Hspbp1|ENSMUSG00000063802.4|HSPA (heat shock 70kDa) binding protein, cytoplasmic cochaperone 1
mm10_v2_chr4_+_152338887_152338967	1.4092	Rfx3_Rfx1_Rfx4	ENSMUST00000005175.4|Chd5|ENSMUSG00000005045.10|chromodomain helicase DNA binding protein 5
mm10_v2_chr10_+_42860348_42860377	1.39653	Rfx3_Rfx1_Rfx4	ENSMUST00000063063.7|Scml4|ENSMUSG00000044770.8|sex comb on midleg-like 4 (Drosophila)
mm10_v2_chr5_+_30281377_30281447	1.39524	Rfx3_Rfx1_Rfx4	ENSMUST00000101448.3|Drc1|ENSMUSG00000073102.3|dynein regulatory complex subunit 1
mm10_v2_chr9_-_14771004_14771044	1.38179	Rfx3_Rfx1_Rfx4	ENSMUST00000060330.3|1700012B09Rik|ENSMUSG00000031927.3|RIKEN cDNA 1700012B09 gene
mm10_v2_chr11_-_12026732_12026823	1.38104	Rfx3_Rfx1_Rfx4	ENSMUST00000143915.1|Grb10|ENSMUSG00000020176.11|growth factor receptor bound protein 10
mm10_v2_chr19_-_60581013_60581025	1.34889	Rfx3_Rfx1_Rfx4	ENSMUST00000111460.3|Cacul1|ENSMUSG00000033417.9|CDK2 associated, cullin domain 1 	ENSMUST00000081790.7|Cacul1|ENSMUSG00000033417.9|CDK2 associated, cullin domain 1 	ENSMUST00000166712.1|Cacul1|ENSMUSG00000033417.9|CDK2 associated, cullin domain 1
mm10_v2_chr11_+_108587077_108587110	1.34859	Rfx3_Rfx1_Rfx4	ENSMUST00000146912.2|Cep112|ENSMUSG00000020728.11|centrosomal protein 112
mm10_v2_chr10_+_34297421_34297513	1.34589	Rfx3_Rfx1_Rfx4	ENSMUST00000047935.6|Tspyl4|ENSMUSG00000039485.6|TSPY-like 4
mm10_v2_chr2_+_27009926_27009935	1.32474	Rfx3_Rfx1_Rfx4	ENSMUST00000114005.2|Cacfd1|ENSMUSG00000015488.8|calcium channel flower domain containing 1 	ENSMUST00000114004.1|Cacfd1|ENSMUSG00000015488.8|calcium channel flower domain containing 1 	ENSMUST00000114006.1|Cacfd1|ENSMUSG00000015488.8|calcium channel flower domain containing 1 	ENSMUST00000114007.1|Cacfd1|ENSMUSG00000015488.8|calcium channel flower domain containing 1
mm10_v2_chr3_+_103968110_103968446	1.32266	Rfx3_Rfx1_Rfx4	ENSMUST00000117150.1|Phtf1|ENSMUSG00000058388.8|putative homeodomain transcription factor 1 	ENSMUST00000063717.7|Phtf1|ENSMUSG00000058388.8|putative homeodomain transcription factor 1 	ENSMUST00000055425.8|Phtf1|ENSMUSG00000058388.8|putative homeodomain transcription factor 1 	ENSMUST00000123611.1|Phtf1|ENSMUSG00000058388.8|putative homeodomain transcription factor 1 	ENSMUST00000090685.4|Phtf1|ENSMUSG00000058388.8|putative homeodomain transcription factor 1
mm10_v2_chr3_-_105960099_105960099	1.32244	Rfx3_Rfx1_Rfx4	ENSMUST00000118209.1|Atp5f1|ENSMUSG00000000563.11|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit B1
mm10_v2_chr10_+_41490436_41490483	1.30976	Rfx3_Rfx1_Rfx4	ENSMUST00000105507.3|Ppil6|ENSMUSG00000078451.4|peptidylprolyl isomerase (cyclophilin)-like 6
mm10_v2_chr7_-_6730412_6730431	1.29532	Rfx3_Rfx1_Rfx4	ENSMUST00000051209.4|Peg3|ENSMUSG00000002265.9|paternally expressed 3
mm10_v2_chr3_-_89214329_89214372	1.29102	Rfx3_Rfx1_Rfx4	ENSMUST00000118964.2|Mtx1|ENSMUSG00000064068.7|metaxin 1
mm10_v2_chr10_+_86302854_86302854	1.28193	Rfx3_Rfx1_Rfx4	ENSMUST00000132307.1|Timp3|ENSMUSG00000020044.7|tissue inhibitor of metalloproteinase 3
mm10_v2_chr8_-_84104773_84104793	1.27539	Rfx3_Rfx1_Rfx4	ENSMUST00000041367.7|Dcaf15|ENSMUSG00000037103.7|DDB1 and CUL4 associated factor 15
mm10_v2_chr15_-_84557776_84557875	1.25674	Rfx3_Rfx1_Rfx4	ENSMUST00000069476.4|Ldoc1l|ENSMUSG00000055745.4|leucine zipper, down-regulated in cancer 1-like
mm10_v2_chr7_-_44748306_44748391	1.25024	Rfx3_Rfx1_Rfx4	ENSMUST00000118162.1|Zfp473|ENSMUSG00000048012.12|zinc finger protein 473 	ENSMUST00000140599.2|Zfp473|ENSMUSG00000048012.12|zinc finger protein 473 	ENSMUST00000120798.1|Zfp473|ENSMUSG00000048012.12|zinc finger protein 473
mm10_v2_chr12_-_32061221_32061301	1.22517	Rfx3_Rfx1_Rfx4	ENSMUST00000003079.5|Prkar2b|ENSMUSG00000002997.9|protein kinase, cAMP dependent regulatory, type II beta 	ENSMUST00000036497.9|Prkar2b|ENSMUSG00000002997.9|protein kinase, cAMP dependent regulatory, type II beta
mm10_v2_chr10_+_80295930_80296003	1.214	Rfx3_Rfx1_Rfx4	ENSMUST00000105359.1|Apc2|ENSMUSG00000020135.7|adenomatosis polyposis coli 2
mm10_v2_chr19_+_6276725_6276792	1.21045	Rfx3_Rfx1_Rfx4	ENSMUST00000025684.3|Ehd1|ENSMUSG00000024772.9|EH-domain containing 1
mm10_v2_chr8_-_122611419_122611487	1.20375	Rfx3_Rfx1_Rfx4	ENSMUST00000015171.9|Galns|ENSMUSG00000015027.10|galactosamine (N-acetyl)-6-sulfate sulfatase
mm10_v2_chr7_-_48881032_48881050	1.20198	Rfx3_Rfx1_Rfx4	ENSMUST00000058745.8|E2f8|ENSMUSG00000046179.11|E2F transcription factor 8
mm10_v2_chr13_-_98926374_98926389	1.17899	Rfx3_Rfx1_Rfx4	ENSMUST00000109401.1|Tnpo1|ENSMUSG00000009470.10|transportin 1
mm10_v2_chr10_+_33905015_33905111	1.16967	Rfx3_Rfx1_Rfx4	ENSMUST00000169670.1|Rsph4a|ENSMUSG00000039552.7|radial spoke head 4 homolog A (Chlamydomonas)
mm10_v2_chr12_+_85219475_85219546	1.16673	Rfx3_Rfx1_Rfx4	ENSMUST00000004910.5|Eif2b2|ENSMUSG00000004788.5|eukaryotic translation initiation factor 2B, subunit 2 beta 	ENSMUST00000140900.1|Eif2b2|ENSMUSG00000004788.5|eukaryotic translation initiation factor 2B, subunit 2 beta 	ENSMUST00000136495.1|Eif2b2|ENSMUSG00000004788.5|eukaryotic translation initiation factor 2B, subunit 2 beta
mm10_v2_chr7_+_3303643_3303654	1.15216	Rfx3_Rfx1_Rfx4	ENSMUST00000172109.1|Prkcg|ENSMUSG00000078816.3|protein kinase C, gamma
mm10_v2_chr1_+_172482199_172482314	1.1492	Rfx3_Rfx1_Rfx4	ENSMUST00000135267.1|Igsf9|ENSMUSG00000037995.9|immunoglobulin superfamily, member 9 	ENSMUST00000052629.6|Igsf9|ENSMUSG00000037995.9|immunoglobulin superfamily, member 9 	ENSMUST00000111235.2|Igsf9|ENSMUSG00000037995.9|immunoglobulin superfamily, member 9
mm10_v2_chrX_-_136741155_136741352	1.14548	Rfx3_Rfx1_Rfx4	ENSMUST00000166930.1|Morf4l2|ENSMUSG00000031422.10|mortality factor 4 like 2 	ENSMUST00000113095.1|Morf4l2|ENSMUSG00000031422.10|mortality factor 4 like 2 	ENSMUST00000155207.1|Morf4l2|ENSMUSG00000031422.10|mortality factor 4 like 2 	ENSMUST00000080411.6|Morf4l2|ENSMUSG00000031422.10|mortality factor 4 like 2 	ENSMUST00000169418.1|Morf4l2|ENSMUSG00000031422.10|mortality factor 4 like 2
mm10_v2_chr19_+_6364557_6364668	1.14026	Rfx3_Rfx1_Rfx4	ENSMUST00000155973.1|Sf1|ENSMUSG00000024949.11|splicing factor 1
mm10_v2_chr10_+_127063527_127063538	1.1329	Rfx3_Rfx1_Rfx4	ENSMUST00000006911.5|Cdk4|ENSMUSG00000006728.6|cyclin-dependent kinase 4
mm10_v2_chr6_-_119330668_119330694	1.13113	Rfx3_Rfx1_Rfx4	ENSMUST00000112756.1|Lrtm2|ENSMUSG00000055003.8|leucine-rich repeats and transmembrane domains 2
mm10_v2_chr19_-_41802028_41802084	1.12362	Rfx3_Rfx1_Rfx4	ENSMUST00000026150.8|Arhgap19|ENSMUSG00000025154.8|Rho GTPase activating protein 19 	ENSMUST00000177495.1|Arhgap19|ENSMUSG00000025154.8|Rho GTPase activating protein 19 	ENSMUST00000163265.1|Arhgap19|ENSMUSG00000025154.8|Rho GTPase activating protein 19
mm10_v2_chr1_+_90603425_90603511	1.11807	Rfx3_Rfx1_Rfx4	ENSMUST00000036153.5|Cops8|ENSMUSG00000034432.5|COP9 (constitutive photomorphogenic) homolog, subunit 8 (Arabidopsis thaliana)
mm10_v2_chr11_+_70029742_70029837	1.11135	Rfx3_Rfx1_Rfx4	ENSMUST00000132597.2|Dlg4|ENSMUSG00000020886.10|discs, large homolog 4 (Drosophila)
mm10_v2_chr9_-_21760275_21760294	1.10733	Rfx3_Rfx1_Rfx4	ENSMUST00000098942.4|Spc24|ENSMUSG00000074476.5|SPC24, NDC80 kinetochore complex component, homolog (S. cerevisiae)
mm10_v2_chr4_-_141933080_141933095	1.10426	Rfx3_Rfx1_Rfx4	ENSMUST00000036701.7|Fhad1|ENSMUSG00000051435.5|forkhead-associated (FHA) phosphopeptide binding domain 1
mm10_v2_chr8_-_4259257_4259283	1.0949	Rfx3_Rfx1_Rfx4	ENSMUST00000053252.7|Ctxn1|ENSMUSG00000048644.7|cortexin 1
mm10_v2_chr7_+_16816299_16816361	1.08454	Rfx3_Rfx1_Rfx4	ENSMUST00000108495.2|Strn4|ENSMUSG00000030374.9|striatin, calmodulin binding protein 4
mm10_v2_chr14_-_26066961_26066961	1.08014	Rfx3_Rfx1_Rfx4	ENSMUST00000100818.5|Tmem254c|ENSMUSG00000072680.5|transmembrane protein 254c
mm10_v2_chr11_-_100620165_100620209	1.07766	Rfx3_Rfx1_Rfx4	ENSMUST00000014339.8|Dnajc7|ENSMUSG00000014195.9|DnaJ (Hsp40) homolog, subfamily C, member 7
mm10_v2_chr7_+_100495987_100496079	1.07312	Rfx3_Rfx1_Rfx4	ENSMUST00000133044.1|Ucp2|ENSMUSG00000033685.6|uncoupling protein 2 (mitochondrial, proton carrier)
mm10_v2_chr9_+_63602650_63602703	1.07041	Rfx3_Rfx1_Rfx4	ENSMUST00000041551.7|Aagab|ENSMUSG00000037257.7|alpha- and gamma-adaptin binding protein
mm10_v2_chr4_+_57434247_57434368	1.06636	Rfx3_Rfx1_Rfx4	ENSMUST00000102905.1|Palm2|ENSMUSG00000090053.3|paralemmin 2
mm10_v2_chr11_-_119300070_119300089	1.06533	Rfx3_Rfx1_Rfx4	ENSMUST00000026667.8|Eif4a3|ENSMUSG00000025580.9|eukaryotic translation initiation factor 4A3
mm10_v2_chr2_+_72297895_72297912	1.06475	Rfx3_Rfx1_Rfx4	ENSMUST00000144111.1|Zak|ENSMUSG00000004085.8|sterile alpha motif and leucine zipper containing kinase AZK
mm10_v2_chr8_-_92355764_92355891	1.06198	Rfx3_Rfx1_Rfx4	ENSMUST00000180102.1|4933436C20Rik|ENSMUSG00000031736.4|RIKEN cDNA 4933436C20 gene 	ENSMUST00000179421.1|4933436C20Rik|ENSMUSG00000031736.4|RIKEN cDNA 4933436C20 gene 	ENSMUST00000179222.1|4933436C20Rik|ENSMUSG00000031736.4|RIKEN cDNA 4933436C20 gene 	ENSMUST00000179029.1|4933436C20Rik|ENSMUSG00000031736.4|RIKEN cDNA 4933436C20 gene
mm10_v2_chr2_+_29788237_29788302	1.06122	Rfx3_Rfx1_Rfx4	ENSMUST00000028137.3|Coq4|ENSMUSG00000026798.4|coenzyme Q4 homolog (yeast) 	ENSMUST00000148791.1|Coq4|ENSMUSG00000026798.4|coenzyme Q4 homolog (yeast)
mm10_v2_chr3_-_57847478_57847610	1.05694	Rfx3_Rfx1_Rfx4	ENSMUST00000120289.1|Pfn2|ENSMUSG00000027805.10|profilin 2 	ENSMUST00000066882.8|Pfn2|ENSMUSG00000027805.10|profilin 2
mm10_v2_chr4_+_62408770_62408865	1.05639	Rfx3_Rfx1_Rfx4	ENSMUST00000084524.3|Prpf4|ENSMUSG00000066148.3|PRP4 pre-mRNA processing factor 4 homolog (yeast)
mm10_v2_chr9_-_72985344_72985397	1.04772	Rfx3_Rfx1_Rfx4	ENSMUST00000124565.2|Gm5918|ENSMUSG00000086158.2|predicted gene 5918
mm10_v2_chr11_+_69070790_69070856	1.04309	Rfx3_Rfx1_Rfx4	ENSMUST00000075980.5|Tmem107|ENSMUSG00000020895.8|transmembrane protein 107 	ENSMUST00000094081.4|Tmem107|ENSMUSG00000020895.8|transmembrane protein 107
mm10_v2_chr5_-_112228934_112228975	1.04071	Rfx3_Rfx1_Rfx4	ENSMUST00000181535.2|Miat|ENSMUSG00000097767.2|myocardial infarction associated transcript (non-protein coding)
mm10_v2_chr19_-_10577362_10577407	1.03737	Rfx3_Rfx1_Rfx4	ENSMUST00000025568.2|Tmem138|ENSMUSG00000024666.5|transmembrane protein 138
mm10_v2_chr1_-_172258410_172258438	1.02905	Rfx3_Rfx1_Rfx4	ENSMUST00000111243.1|Atp1a4|ENSMUSG00000007107.5|ATPase, Na+/K+ transporting, alpha 4 polypeptide
mm10_v2_chr9_+_65460926_65460983	1.02664	Rfx3_Rfx1_Rfx4	ENSMUST00000034955.6|Spg21|ENSMUSG00000032388.6|spastic paraplegia 21 homolog (human)
mm10_v2_chr10_+_74967164_74967203	1.01937	Rfx3_Rfx1_Rfx4	ENSMUST00000037813.4|Gnaz|ENSMUSG00000040009.5|guanine nucleotide binding protein, alpha z subunit
mm10_v2_chr8_-_106337987_106337996	1.01767	Rfx3_Rfx1_Rfx4	ENSMUST00000067512.7|Smpd3|ENSMUSG00000031906.8|sphingomyelin phosphodiesterase 3, neutral
mm10_v2_chr8_+_124863032_124863089	1.0105	Rfx3_Rfx1_Rfx4	ENSMUST00000034466.3|Gnpat|ENSMUSG00000031985.3|glyceronephosphate O-acyltransferase 	ENSMUST00000161986.1|Gnpat|ENSMUSG00000031985.3|glyceronephosphate O-acyltransferase
mm10_v2_chr5_-_137530990_137531049	1.00442	Rfx3_Rfx1_Rfx4	ENSMUST00000132525.1|Gnb2|ENSMUSG00000029713.9|guanine nucleotide binding protein (G protein), beta 2
mm10_v2_chr4_-_103114238_103114299	0.999403	Rfx3_Rfx1_Rfx4	ENSMUST00000036451.8|Wdr78|ENSMUSG00000035126.13|WD repeat domain 78 	ENSMUST00000036557.8|Wdr78|ENSMUSG00000035126.13|WD repeat domain 78
mm10_v2_chr1_+_83159733_83159781	0.994737	Rfx3_Rfx1_Rfx4	ENSMUST00000113436.1|Daw1|ENSMUSG00000053161.10|dynein assembly factor with WDR repeat domains 1 	ENSMUST00000065436.3|Daw1|ENSMUSG00000053161.10|dynein assembly factor with WDR repeat domains 1 	ENSMUST00000065403.6|Daw1|ENSMUSG00000053161.10|dynein assembly factor with WDR repeat domains 1
mm10_v2_chr9_+_108508005_108508076	0.994386	Rfx3_Rfx1_Rfx4	ENSMUST00000006838.8|Qars|ENSMUSG00000032604.8|glutaminyl-tRNA synthetase 	ENSMUST00000134939.1|Qars|ENSMUSG00000032604.8|glutaminyl-tRNA synthetase
mm10_v2_chr15_+_76671615_76671710	0.985076	Rfx3_Rfx1_Rfx4	ENSMUST00000037551.8|Ppp1r16a|ENSMUSG00000033819.9|protein phosphatase 1, regulatory (inhibitor) subunit 16A
mm10_v2_chr4_+_126058557_126058613	0.983604	Rfx3_Rfx1_Rfx4	ENSMUST00000035497.4|Oscp1|ENSMUSG00000042616.7|organic solute carrier partner 1
mm10_v2_chr18_+_56707725_56707940	0.978933	Rfx3_Rfx1_Rfx4	ENSMUST00000025486.8|Lmnb1|ENSMUSG00000024590.8|lamin B1
mm10_v2_chr18_-_35662180_35662195	0.96894	Rfx3_Rfx1_Rfx4	ENSMUST00000025209.4|Spata24|ENSMUSG00000024352.5|spermatogenesis associated 24 	ENSMUST00000096573.2|Spata24|ENSMUSG00000024352.5|spermatogenesis associated 24
mm10_v2_chr7_+_3290553_3290586	0.961029	Rfx3_Rfx1_Rfx4	ENSMUST00000096744.5|Myadm|ENSMUSG00000068566.6|myeloid-associated differentiation marker
mm10_v2_chr2_+_90904740_90904778	0.957788	Rfx3_Rfx1_Rfx4	ENSMUST00000111464.1|Kbtbd4|ENSMUSG00000005505.6|kelch repeat and BTB (POZ) domain containing 4 	ENSMUST00000090682.3|Kbtbd4|ENSMUSG00000005505.6|kelch repeat and BTB (POZ) domain containing 4
mm10_v2_chr16_-_91069142_91069159	0.955896	Rfx3_Rfx1_Rfx4	ENSMUST00000035689.1|4932438H23Rik|ENSMUSG00000039851.5|RIKEN cDNA 4932438H23 gene 	ENSMUST00000114076.1|4932438H23Rik|ENSMUSG00000039851.5|RIKEN cDNA 4932438H23 gene
mm10_v2_chr19_-_41896132_41896155	0.955183	Rfx3_Rfx1_Rfx4	ENSMUST00000038677.3|Rrp12|ENSMUSG00000035049.3|ribosomal RNA processing 12 homolog (S. cerevisiae)
mm10_v2_chr6_+_83185946_83186151	0.953964	Rfx3_Rfx1_Rfx4	ENSMUST00000113907.1|Dctn1|ENSMUSG00000031865.9|dynactin 1
mm10_v2_chr7_+_126950518_126950584	0.949948	Rfx3_Rfx1_Rfx4	ENSMUST00000106335.1|Sez6l2|ENSMUSG00000030683.5|seizure related 6 homolog like 2 	ENSMUST00000146017.1|Sez6l2|ENSMUSG00000030683.5|seizure related 6 homolog like 2
mm10_v2_chr6_-_77979515_77979622	0.945264	Rfx3_Rfx1_Rfx4	ENSMUST00000159626.1|Ctnna2|ENSMUSG00000063063.6|catenin (cadherin associated protein), alpha 2 	ENSMUST00000075340.5|Ctnna2|ENSMUSG00000063063.6|catenin (cadherin associated protein), alpha 2 	ENSMUST00000162273.1|Ctnna2|ENSMUSG00000063063.6|catenin (cadherin associated protein), alpha 2
mm10_v2_chr2_+_110017879_110017962	0.935235	Rfx3_Rfx1_Rfx4	ENSMUST00000150183.2|Ccdc34|ENSMUSG00000027160.10|coiled-coil domain containing 34
mm10_v2_chr4_+_152478142_152478183	0.934777	Rfx3_Rfx1_Rfx4	ENSMUST00000081393.3|Nphp4|ENSMUSG00000039577.11|nephronophthisis 4 (juvenile) homolog (human)
mm10_v2_chr7_+_126950837_126950966	0.932576	Rfx3_Rfx1_Rfx4	ENSMUST00000106332.1|Sez6l2|ENSMUSG00000030683.5|seizure related 6 homolog like 2
mm10_v2_chr4_+_40722461_40722512	0.916599	Rfx3_Rfx1_Rfx4	ENSMUST00000030118.3|Dnaja1|ENSMUSG00000028410.7|DnaJ (Hsp40) homolog, subfamily A, member 1
mm10_v2_chr5_+_123749696_123749735	0.910653	Rfx3_Rfx1_Rfx4	ENSMUST00000031366.7|Kntc1|ENSMUSG00000029414.7|kinetochore associated 1
mm10_v2_chr19_+_6363671_6363704	0.907336	Rfx3_Rfx1_Rfx4	ENSMUST00000131252.1|Sf1|ENSMUSG00000024949.11|splicing factor 1
mm10_v2_chr8_-_92356103_92356120	0.902784	Rfx3_Rfx1_Rfx4	ENSMUST00000034183.3|4933436C20Rik|ENSMUSG00000031736.4|RIKEN cDNA 4933436C20 gene
mm10_v2_chr16_-_32099697_32099752	0.897103	Rfx3_Rfx1_Rfx4	ENSMUST00000155966.1|Pigx|ENSMUSG00000023791.8|phosphatidylinositol glycan anchor biosynthesis, class X 	ENSMUST00000096109.4|Pigx|ENSMUSG00000023791.8|phosphatidylinositol glycan anchor biosynthesis, class X
mm10_v2_chr17_-_46247968_46248054	0.893509	Rfx3_Rfx1_Rfx4	ENSMUST00000142706.2|Polr1c|ENSMUSG00000067148.9|polymerase (RNA) I polypeptide C 	ENSMUST00000173349.1|Polr1c|ENSMUSG00000067148.9|polymerase (RNA) I polypeptide C 	ENSMUST00000087026.6|Polr1c|ENSMUSG00000067148.9|polymerase (RNA) I polypeptide C
mm10_v2_chr7_+_141195047_141195083	0.885164	Rfx3_Rfx1_Rfx4	ENSMUST00000047093.4|Lrrc56|ENSMUSG00000038637.8|leucine rich repeat containing 56
mm10_v2_chr6_-_119330723_119330800	0.875758	Rfx3_Rfx1_Rfx4	ENSMUST00000068351.7|Lrtm2|ENSMUSG00000055003.8|leucine-rich repeats and transmembrane domains 2
mm10_v2_chr10_-_39133848_39133912	0.872314	Rfx3_Rfx1_Rfx4	ENSMUST00000134279.1|Fam229b|ENSMUSG00000051736.2|family with sequence similarity 229, member B 	ENSMUST00000139743.1|Fam229b|ENSMUSG00000051736.2|family with sequence similarity 229, member B 	ENSMUST00000149949.1|Fam229b|ENSMUSG00000051736.2|family with sequence similarity 229, member B 	ENSMUST00000124941.1|Fam229b|ENSMUSG00000051736.2|family with sequence similarity 229, member B 	ENSMUST00000125042.1|Fam229b|ENSMUSG00000051736.2|family with sequence similarity 229, member B 	ENSMUST00000063204.2|Fam229b|ENSMUSG00000051736.2|family with sequence similarity 229, member B
mm10_v2_chr10_+_86705811_86705878	0.869365	Rfx3_Rfx1_Rfx4	ENSMUST00000061458.7|BC030307|ENSMUSG00000044937.8|cDNA sequence BC030307 	ENSMUST00000075632.6|BC030307|ENSMUSG00000044937.8|cDNA sequence BC030307
mm10_v2_chr11_+_21091291_21091339	0.868096	Rfx3_Rfx1_Rfx4	ENSMUST00000093290.5|Peli1|ENSMUSG00000020134.7|pellino 1
mm10_v2_chr2_+_29890096_29890156	0.866381	Rfx3_Rfx1_Rfx4	ENSMUST00000113762.1|Odf2|ENSMUSG00000026790.13|outer dense fiber of sperm tails 2 	ENSMUST00000113765.1|Odf2|ENSMUSG00000026790.13|outer dense fiber of sperm tails 2
mm10_v2_chr18_+_31609512_31609512	0.86636	Rfx3_Rfx1_Rfx4	ENSMUST00000164667.1|B930094E09Rik|ENSMUSG00000092124.1|RIKEN cDNA B930094E09 gene
mm10_v2_chr5_-_137531204_137531297	0.865473	Rfx3_Rfx1_Rfx4	ENSMUST00000150063.2|Gnb2|ENSMUSG00000029713.9|guanine nucleotide binding protein (G protein), beta 2
mm10_v2_chr18_+_48045329_48045348	0.854323	Rfx3_Rfx1_Rfx4	ENSMUST00000076155.4|Gm5506|ENSMUSG00000059040.4|predicted gene 5506
mm10_v2_chr2_-_118549668_118549687	0.852664	Rfx3_Rfx1_Rfx4	ENSMUST00000090219.6|Bmf|ENSMUSG00000040093.9|BCL2 modifying factor
mm10_v2_chr7_+_6172482_6172531	0.85225	Rfx3_Rfx1_Rfx4	ENSMUST00000108567.1|Zfp444|ENSMUSG00000044876.8|zinc finger protein 444 	ENSMUST00000054680.5|Zfp444|ENSMUSG00000044876.8|zinc finger protein 444 	ENSMUST00000108566.1|Zfp444|ENSMUSG00000044876.8|zinc finger protein 444
mm10_v2_chr8_-_22805596_22805654	0.850043	Rfx3_Rfx1_Rfx4	ENSMUST00000163739.1|Ap3m2|ENSMUSG00000031539.5|adaptor-related protein complex 3, mu 2 subunit
mm10_v2_chr13_+_97137937_97138040	0.848413	Rfx3_Rfx1_Rfx4	ENSMUST00000042084.6|Gfm2|ENSMUSG00000021666.10|G elongation factor, mitochondrial 2 	ENSMUST00000160139.1|Gfm2|ENSMUSG00000021666.10|G elongation factor, mitochondrial 2 	ENSMUST00000161639.1|Gfm2|ENSMUSG00000021666.10|G elongation factor, mitochondrial 2 	ENSMUST00000161913.1|Gfm2|ENSMUSG00000021666.10|G elongation factor, mitochondrial 2 	ENSMUST00000161825.1|Gfm2|ENSMUSG00000021666.10|G elongation factor, mitochondrial 2 	ENSMUST00000161929.1|Gfm2|ENSMUSG00000021666.10|G elongation factor, mitochondrial 2 	ENSMUST00000022170.7|Gfm2|ENSMUSG00000021666.10|G elongation factor, mitochondrial 2
mm10_v2_chrX_+_134601179_134601266	0.845074	Rfx3_Rfx1_Rfx4	ENSMUST00000074950.4|Hnrnph2|ENSMUSG00000045427.7|heterogeneous nuclear ribonucleoprotein H2 	ENSMUST00000113203.1|Hnrnph2|ENSMUSG00000045427.7|heterogeneous nuclear ribonucleoprotein H2 	ENSMUST00000113202.1|Hnrnph2|ENSMUSG00000045427.7|heterogeneous nuclear ribonucleoprotein H2
mm10_v2_chr7_-_92637079_92637147	0.845	Rfx3_Rfx1_Rfx4	ENSMUST00000056106.7|Ankrd42|ENSMUSG00000041343.12|ankyrin repeat domain 42 	ENSMUST00000118157.1|Ankrd42|ENSMUSG00000041343.12|ankyrin repeat domain 42
mm10_v2_chr11_+_53567361_53567526	0.841075	Rfx3_Rfx1_Rfx4	ENSMUST00000057330.8|Kif3a|ENSMUSG00000018395.13|kinesin family member 3A 	ENSMUST00000120613.2|Kif3a|ENSMUSG00000018395.13|kinesin family member 3A 	ENSMUST00000173744.1|Kif3a|ENSMUSG00000018395.13|kinesin family member 3A 	ENSMUST00000118353.2|Kif3a|ENSMUSG00000018395.13|kinesin family member 3A
mm10_v2_chr12_-_21417526_21417588	0.838447	Rfx3_Rfx1_Rfx4	ENSMUST00000049531.9|Ywhaq|ENSMUSG00000076432.6|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide 	ENSMUST00000155480.1|Ywhaq|ENSMUSG00000076432.6|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide
mm10_v2_chr17_-_6655939_6655939	0.835479	Rfx3_Rfx1_Rfx4	ENSMUST00000179554.1|Dynlt1f|ENSMUSG00000095677.1|dynein light chain Tctex-type 1F
mm10_v2_chr11_-_48816936_48816961	0.832328	Rfx3_Rfx1_Rfx4	ENSMUST00000140800.1|Trim41|ENSMUSG00000040365.8|tripartite motif-containing 41
mm10_v2_chr11_+_88047693_88047727	0.83034	Rfx3_Rfx1_Rfx4	ENSMUST00000079866.4|Srsf1|ENSMUSG00000018379.11|serine/arginine-rich splicing factor 1
mm10_v2_chr10_+_122678764_122678811	0.829622	Rfx3_Rfx1_Rfx4	ENSMUST00000161487.1|Ppm1h|ENSMUSG00000034613.6|protein phosphatase 1H (PP2C domain containing) 	ENSMUST00000067918.5|Ppm1h|ENSMUSG00000034613.6|protein phosphatase 1H (PP2C domain containing)
mm10_v2_chr7_-_98145472_98145502	0.821325	Rfx3_Rfx1_Rfx4	ENSMUST00000098281.2|Omp|ENSMUSG00000074006.2|olfactory marker protein
mm10_v2_chr4_-_103114555_103114578	0.818314	Rfx3_Rfx1_Rfx4	ENSMUST00000106868.3|Wdr78|ENSMUSG00000035126.13|WD repeat domain 78
mm10_v2_chr1_+_37299882_37299937	0.811681	Rfx3_Rfx1_Rfx4	ENSMUST00000136846.1|Inpp4a|ENSMUSG00000026113.11|inositol polyphosphate-4-phosphatase, type I 	ENSMUST00000027287.4|Inpp4a|ENSMUSG00000026113.11|inositol polyphosphate-4-phosphatase, type I 	ENSMUST00000132401.1|Inpp4a|ENSMUSG00000026113.11|inositol polyphosphate-4-phosphatase, type I
mm10_v2_chr12_-_69790660_69790735	0.810127	Rfx3_Rfx1_Rfx4	ENSMUST00000021377.4|Cdkl1|ENSMUSG00000020990.4|cyclin-dependent kinase-like 1 (CDC2-related kinase)
mm10_v2_chr7_+_126950687_126950729	0.798368	Rfx3_Rfx1_Rfx4	ENSMUST00000106333.1|Sez6l2|ENSMUSG00000030683.5|seizure related 6 homolog like 2
mm10_v2_chr14_-_25927250_25927250	0.795574	Rfx3_Rfx1_Rfx4	ENSMUST00000100811.5|Tmem254a|ENSMUSG00000072676.5|transmembrane protein 254a
mm10_v2_chr19_+_6363719_6363810	0.793332	Rfx3_Rfx1_Rfx4	ENSMUST00000113489.1|Sf1|ENSMUSG00000024949.11|splicing factor 1 	ENSMUST00000113488.1|Sf1|ENSMUSG00000024949.11|splicing factor 1
mm10_v2_chr4_-_141790891_141790931	0.783739	Rfx3_Rfx1_Rfx4	ENSMUST00000038014.4|Dnajc16|ENSMUSG00000040697.4|DnaJ (Hsp40) homolog, subfamily C, member 16 	ENSMUST00000153880.1|Dnajc16|ENSMUSG00000040697.4|DnaJ (Hsp40) homolog, subfamily C, member 16
mm10_v2_chr11_+_4160348_4160404	0.780184	Rfx3_Rfx1_Rfx4	ENSMUST00000002198.3|Sf3a1|ENSMUSG00000002129.5|splicing factor 3a, subunit 1
mm10_v2_chr11_-_119300004_119300034	0.77027	Rfx3_Rfx1_Rfx4	ENSMUST00000106253.1|Eif4a3|ENSMUSG00000025580.9|eukaryotic translation initiation factor 4A3
mm10_v2_chr2_+_164823001_164823040	0.768714	Rfx3_Rfx1_Rfx4	ENSMUST00000132282.1|Zswim1|ENSMUSG00000017764.2|zinc finger SWIM-type containing 1
mm10_v2_chr3_+_98382438_98382520	0.762336	Rfx3_Rfx1_Rfx4	ENSMUST00000056096.8|Zfp697|ENSMUSG00000050064.8|zinc finger protein 697
mm10_v2_chr4_-_135573623_135573643	0.759811	Rfx3_Rfx1_Rfx4	ENSMUST00000105855.1|Grhl3|ENSMUSG00000037188.7|grainyhead-like 3 (Drosophila)
mm10_v2_chr11_+_101468164_101468175	0.758556	Rfx3_Rfx1_Rfx4	ENSMUST00000001347.6|Rnd2|ENSMUSG00000001313.6|Rho family GTPase 2
mm10_v2_chr10_+_127063599_127063655	0.750993	Rfx3_Rfx1_Rfx4	ENSMUST00000120226.1|Cdk4|ENSMUSG00000006728.6|cyclin-dependent kinase 4 	ENSMUST00000133115.1|Cdk4|ENSMUSG00000006728.6|cyclin-dependent kinase 4
mm10_v2_chr10_+_110745433_110745572	0.750264	Rfx3_Rfx1_Rfx4	ENSMUST00000174857.1|E2f7|ENSMUSG00000020185.10|E2F transcription factor 7 	ENSMUST00000073781.5|E2f7|ENSMUSG00000020185.10|E2F transcription factor 7 	ENSMUST00000173471.1|E2f7|ENSMUSG00000020185.10|E2F transcription factor 7 	ENSMUST00000173634.1|E2f7|ENSMUSG00000020185.10|E2F transcription factor 7
mm10_v2_chrX_-_140062550_140062583	0.749075	Rfx3_Rfx1_Rfx4	ENSMUST00000124075.1|Nup62cl|ENSMUSG00000072944.5|nucleoporin 62 C-terminal like 	ENSMUST00000101212.2|Nup62cl|ENSMUSG00000072944.5|nucleoporin 62 C-terminal like 	ENSMUST00000125678.2|Nup62cl|ENSMUSG00000072944.5|nucleoporin 62 C-terminal like
mm10_v2_chr2_+_125136692_125136769	0.744833	Rfx3_Rfx1_Rfx4	ENSMUST00000099452.2|Ctxn2|ENSMUSG00000074872.2|cortexin 2
mm10_v2_chr10_-_39133914_39133927	0.739043	Rfx3_Rfx1_Rfx4	ENSMUST00000135785.1|Fam229b|ENSMUSG00000051736.2|family with sequence similarity 229, member B
mm10_v2_chr8_+_94667082_94667226	0.738675	Rfx3_Rfx1_Rfx4	ENSMUST00000109527.4|Arl2bp|ENSMUSG00000031776.10|ADP-ribosylation factor-like 2 binding protein
mm10_v2_chr12_-_69198419_69198429	0.734553	Rfx3_Rfx1_Rfx4	ENSMUST00000021356.5|Dnaaf2|ENSMUSG00000020973.7|dynein, axonemal assembly factor 2
mm10_v2_chrX_-_122397351_122397425	0.733131	Rfx3_Rfx1_Rfx4	ENSMUST00000079490.4|Nap1l3|ENSMUSG00000055733.5|nucleosome assembly protein 1-like 3
mm10_v2_chr11_-_74897052_74897094	0.721165	Rfx3_Rfx1_Rfx4	ENSMUST00000057631.5|Sgsm2|ENSMUSG00000038351.8|small G protein signaling modulator 2 	ENSMUST00000081799.5|Sgsm2|ENSMUSG00000038351.8|small G protein signaling modulator 2
mm10_v2_chr2_+_166792525_166792536	0.720595	Rfx3_Rfx1_Rfx4	ENSMUST00000065753.1|Trp53rk|ENSMUSG00000042854.9|transformation related protein 53 regulating kinase
mm10_v2_chr6_+_88084473_88084527	0.718865	Rfx3_Rfx1_Rfx4	ENSMUST00000032143.6|Rpn1|ENSMUSG00000030062.6|ribophorin I
mm10_v2_chr3_+_98382538_98382553	0.713633	Rfx3_Rfx1_Rfx4	ENSMUST00000178372.1|Zfp697|ENSMUSG00000050064.8|zinc finger protein 697
mm10_v2_chr9_+_104569754_104569793	0.707562	Rfx3_Rfx1_Rfx4	ENSMUST00000077190.6|Cpne4|ENSMUSG00000032564.9|copine IV
mm10_v2_chr9_-_105395237_105395289	0.707544	Rfx3_Rfx1_Rfx4	ENSMUST00000140851.1|Nek11|ENSMUSG00000035032.5|NIMA (never in mitosis gene a)-related expressed kinase 11
mm10_v2_chr6_+_113392417_113392497	0.705514	Rfx3_Rfx1_Rfx4	ENSMUST00000032414.4|Ttll3|ENSMUSG00000030276.13|tubulin tyrosine ligase-like family, member 3 	ENSMUST00000038889.5|Ttll3|ENSMUSG00000030276.13|tubulin tyrosine ligase-like family, member 3
mm10_v2_chr17_+_6430112_6430204	0.704119	Rfx3_Rfx1_Rfx4	ENSMUST00000179569.1|Dynlt1b|ENSMUSG00000096255.1|dynein light chain Tctex-type 1B
mm10_v2_chr2_-_163645125_163645136	0.693799	Rfx3_Rfx1_Rfx4	ENSMUST00000017851.3|Serinc3|ENSMUSG00000017707.9|serine incorporator 3
mm10_v2_chr7_-_48881596_48881619	0.693159	Rfx3_Rfx1_Rfx4	ENSMUST00000119223.1|E2f8|ENSMUSG00000046179.11|E2F transcription factor 8
mm10_v2_chr16_-_64771146_64771184	0.691106	Rfx3_Rfx1_Rfx4	ENSMUST00000076991.6|4930453N24Rik|ENSMUSG00000059920.9|RIKEN cDNA 4930453N24 gene
mm10_v2_chr9_+_104569671_104569683	0.690906	Rfx3_Rfx1_Rfx4	ENSMUST00000057742.8|Cpne4|ENSMUSG00000032564.9|copine IV
mm10_v2_chr17_-_80207299_80207308	0.686	Rfx3_Rfx1_Rfx4	ENSMUST00000063417.9|Srsf7|ENSMUSG00000024097.10|serine/arginine-rich splicing factor 7
mm10_v2_chr7_+_118855735_118855798	0.685987	Rfx3_Rfx1_Rfx4	ENSMUST00000098087.2|Iqck|ENSMUSG00000073856.4|IQ motif containing K 	ENSMUST00000106547.1|Iqck|ENSMUSG00000073856.4|IQ motif containing K
mm10_v2_chr3_-_106001474_106001513	0.685464	Rfx3_Rfx1_Rfx4	ENSMUST00000066319.6|Pifo|ENSMUSG00000010136.8|primary cilia formation
mm10_v2_chr11_+_61505138_61505210	0.683515	Rfx3_Rfx1_Rfx4	ENSMUST00000102657.3|B9d1|ENSMUSG00000001039.6|B9 protein domain 1
mm10_v2_chr11_+_88047302_88047373	0.681963	Rfx3_Rfx1_Rfx4	ENSMUST00000139129.2|Srsf1|ENSMUSG00000018379.11|serine/arginine-rich splicing factor 1
mm10_v2_chr8_+_119575235_119575340	0.679257	Rfx3_Rfx1_Rfx4	ENSMUST00000093100.2|Dnaaf1|ENSMUSG00000031831.6|dynein, axonemal assembly factor 1
mm10_v2_chr12_-_21417591_21417637	0.673253	Rfx3_Rfx1_Rfx4	ENSMUST00000135088.1|Ywhaq|ENSMUSG00000076432.6|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide
mm10_v2_chr12_-_110840905_110840950	0.672247	Rfx3_Rfx1_Rfx4	ENSMUST00000177224.1|Stk30|ENSMUSG00000056458.10|serine/threonine kinase 30 	ENSMUST00000084974.4|Stk30|ENSMUSG00000056458.10|serine/threonine kinase 30 	ENSMUST00000070565.8|Stk30|ENSMUSG00000056458.10|serine/threonine kinase 30
mm10_v2_chr19_+_10577439_10577461	0.667417	Rfx3_Rfx1_Rfx4	ENSMUST00000168445.1|Cyb561a3|ENSMUSG00000034445.7|cytochrome b561 family, member A3
mm10_v2_chr1_+_84839833_84839875	0.663683	Rfx3_Rfx1_Rfx4	ENSMUST00000097672.3|Fbxo36|ENSMUSG00000073633.3|F-box protein 36
mm10_v2_chr4_+_123904832_123904851	0.660097	Rfx3_Rfx1_Rfx4	ENSMUST00000030400.7|Mycbp|ENSMUSG00000028647.7|c-myc binding protein
mm10_v2_chr19_+_43689672_43689695	0.657511	Rfx3_Rfx1_Rfx4	ENSMUST00000081079.5|Entpd7|ENSMUSG00000025192.7|ectonucleoside triphosphate diphosphohydrolase 7
mm10_v2_chr11_-_59839745_59839763	0.657296	Rfx3_Rfx1_Rfx4	ENSMUST00000141415.1|Cops3|ENSMUSG00000019373.5|COP9 (constitutive photomorphogenic) homolog, subunit 3 (Arabidopsis thaliana)
mm10_v2_chr6_-_113740675_113740743	0.652164	Rfx3_Rfx1_Rfx4	ENSMUST00000032440.4|Sec13|ENSMUSG00000030298.4|SEC13 homolog (S. cerevisiae)
mm10_v2_chr7_-_109616548_109616616	0.65011	Rfx3_Rfx1_Rfx4	ENSMUST00000077909.1|St5|ENSMUSG00000031024.6|suppression of tumorigenicity 5 	ENSMUST00000084738.3|St5|ENSMUSG00000031024.6|suppression of tumorigenicity 5
mm10_v2_chr4_+_123904907_123904916	0.649763	Rfx3_Rfx1_Rfx4	ENSMUST00000106202.3|Mycbp|ENSMUSG00000028647.7|c-myc binding protein
mm10_v2_chr2_-_75981967_75981967	0.648793	Rfx3_Rfx1_Rfx4	ENSMUST00000099994.3|Ttc30a1|ENSMUSG00000075271.3|tetratricopeptide repeat domain 30A1
mm10_v2_chr12_-_21417356_21417436	0.645751	Rfx3_Rfx1_Rfx4	ENSMUST00000103002.1|Ywhaq|ENSMUSG00000076432.6|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide
mm10_v2_chr1_+_139454747_139454825	0.64534	Rfx3_Rfx1_Rfx4	ENSMUST00000053364.8|Aspm|ENSMUSG00000033952.8|asp (abnormal spindle)-like, microcephaly associated (Drosophila) 	ENSMUST00000097554.3|Aspm|ENSMUSG00000033952.8|asp (abnormal spindle)-like, microcephaly associated (Drosophila)
mm10_v2_chr9_-_110476637_110476694	0.644453	Rfx3_Rfx1_Rfx4	ENSMUST00000111934.1|Klhl18|ENSMUSG00000054792.9|kelch-like 18 	ENSMUST00000068025.6|Klhl18|ENSMUSG00000054792.9|kelch-like 18
mm10_v2_chr10_-_128645784_128645826	0.643143	Rfx3_Rfx1_Rfx4	ENSMUST00000065334.3|Ikzf4|ENSMUSG00000002578.9|IKAROS family zinc finger 4
mm10_v2_chr10_-_92162753_92162765	0.640662	Rfx3_Rfx1_Rfx4	ENSMUST00000182197.1|Rmst|ENSMUSG00000097348.2|rhabdomyosarcoma 2 associated transcript (non-coding RNA)
mm10_v2_chr6_-_136875794_136875811	0.638985	Rfx3_Rfx1_Rfx4	ENSMUST00000032342.1|Mgp|ENSMUSG00000030218.1|matrix Gla protein
mm10_v2_chr5_+_30814571_30814641	0.636255	Rfx3_Rfx1_Rfx4	ENSMUST00000031058.8|Mapre3|ENSMUSG00000029166.8|microtubule-associated protein, RP/EB family, member 3
mm10_v2_chr2_+_71981184_71981287	0.635732	Rfx3_Rfx1_Rfx4	ENSMUST00000090826.5|Rapgef4|ENSMUSG00000049044.10|Rap guanine nucleotide exchange factor (GEF) 4 	ENSMUST00000102698.3|Rapgef4|ENSMUSG00000049044.10|Rap guanine nucleotide exchange factor (GEF) 4
mm10_v2_chrX_+_134601271_134601286	0.629424	Rfx3_Rfx1_Rfx4	ENSMUST00000050331.6|Hnrnph2|ENSMUSG00000045427.7|heterogeneous nuclear ribonucleoprotein H2 	ENSMUST00000059297.5|Hnrnph2|ENSMUSG00000045427.7|heterogeneous nuclear ribonucleoprotein H2
mm10_v2_chr3_+_82358056_82358075	0.629329	Rfx3_Rfx1_Rfx4	ENSMUST00000091014.4|Map9|ENSMUSG00000033900.8|microtubule-associated protein 9
mm10_v2_chr19_-_7241216_7241226	0.62474	Rfx3_Rfx1_Rfx4	ENSMUST00000025675.9|Naa40|ENSMUSG00000024764.9|N(alpha)-acetyltransferase 40, NatD catalytic subunit, homolog (S. cerevisiae)
mm10_v2_chr17_-_34627365_34627525	0.624656	Rfx3_Rfx1_Rfx4	ENSMUST00000064953.8|Ppt2|ENSMUSG00000015474.10|palmitoyl-protein thioesterase 2 	ENSMUST00000170345.1|Ppt2|ENSMUSG00000015474.10|palmitoyl-protein thioesterase 2 	ENSMUST00000171121.2|Ppt2|ENSMUSG00000015474.10|palmitoyl-protein thioesterase 2 	ENSMUST00000168391.2|Ppt2|ENSMUSG00000015474.10|palmitoyl-protein thioesterase 2 	ENSMUST00000169067.2|Ppt2|ENSMUSG00000015474.10|palmitoyl-protein thioesterase 2
mm10_v2_chr15_-_98763195_98763220	0.622922	Rfx3_Rfx1_Rfx4	ENSMUST00000053183.9|Arf3|ENSMUSG00000051853.8|ADP-ribosylation factor 3
mm10_v2_chr12_+_5411641_5411641	0.619886	Rfx3_Rfx1_Rfx4	ENSMUST00000163627.1|2810032G03Rik|ENSMUSG00000037735.6|RIKEN cDNA 2810032G03 gene
mm10_v2_chr1_+_64690443_64690467	0.619618	Rfx3_Rfx1_Rfx4	ENSMUST00000114077.1|Ccnyl1|ENSMUSG00000070871.4|cyclin Y-like 1
mm10_v2_chr8_+_123332676_123332740	0.619302	Rfx3_Rfx1_Rfx4	ENSMUST00000010298.6|Spire2|ENSMUSG00000010154.6|spire homolog 2 (Drosophila)
mm10_v2_chr4_+_126096623_126096708	0.618672	Rfx3_Rfx1_Rfx4	ENSMUST00000055575.7|Lsm10|ENSMUSG00000050188.8|U7 snRNP-specific Sm-like protein LSM10 	ENSMUST00000179323.1|Lsm10|ENSMUSG00000050188.8|U7 snRNP-specific Sm-like protein LSM10 	ENSMUST00000151831.1|Lsm10|ENSMUSG00000050188.8|U7 snRNP-specific Sm-like protein LSM10
mm10_v2_chr7_+_101321079_101321134	0.613443	Rfx3_Rfx1_Rfx4	ENSMUST00000032927.7|Stard10|ENSMUSG00000030688.8|START domain containing 10
mm10_v2_chr3_-_89213840_89213923	0.602394	Rfx3_Rfx1_Rfx4	ENSMUST00000173477.1|Mtx1|ENSMUSG00000064068.7|metaxin 1 	ENSMUST00000119222.1|Mtx1|ENSMUSG00000064068.7|metaxin 1
mm10_v2_chr12_+_69963452_69963474	0.601998	Rfx3_Rfx1_Rfx4	ENSMUST00000110560.1|Gm3086|ENSMUSG00000079076.1|predicted gene 3086
mm10_v2_chr1_+_69826986_69827003	0.59495	Rfx3_Rfx1_Rfx4	ENSMUST00000065425.5|Spag16|ENSMUSG00000053153.8|sperm associated antigen 16 	ENSMUST00000113940.2|Spag16|ENSMUSG00000053153.8|sperm associated antigen 16
mm10_v2_chr11_-_61453992_61454106	0.594477	Rfx3_Rfx1_Rfx4	ENSMUST00000060255.7|Rnf112|ENSMUSG00000010086.11|ring finger protein 112 	ENSMUST00000054927.7|Rnf112|ENSMUSG00000010086.11|ring finger protein 112 	ENSMUST00000102661.3|Rnf112|ENSMUSG00000010086.11|ring finger protein 112
mm10_v2_chr9_+_20652107_20652138	0.58969	Rfx3_Rfx1_Rfx4	ENSMUST00000034689.6|Pin1|ENSMUSG00000032171.6|protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting 1
mm10_v2_chr2_-_73775341_73775378	0.588418	Rfx3_Rfx1_Rfx4	ENSMUST00000112024.3|Chn1|ENSMUSG00000056486.11|chimerin (chimaerin) 1 	ENSMUST00000166199.1|Chn1|ENSMUSG00000056486.11|chimerin (chimaerin) 1 	ENSMUST00000180045.1|Chn1|ENSMUSG00000056486.11|chimerin (chimaerin) 1
mm10_v2_chr10_-_128645965_128645991	0.584076	Rfx3_Rfx1_Rfx4	ENSMUST00000133342.1|Ikzf4|ENSMUSG00000002578.9|IKAROS family zinc finger 4
mm10_v2_chrX_+_153359613_153359613	0.583123	Rfx3_Rfx1_Rfx4	ENSMUST00000039545.4|Klf8|ENSMUSG00000041649.7|Kruppel-like factor 8
mm10_v2_chr10_+_13008442_13008519	0.582935	Rfx3_Rfx1_Rfx4	ENSMUST00000105139.3|Sf3b5|ENSMUSG00000078348.3|splicing factor 3b, subunit 5
mm10_v2_chr10_-_81060134_81060204	0.581679	Rfx3_Rfx1_Rfx4	ENSMUST00000005067.5|Sgta|ENSMUSG00000004937.5|small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha
mm10_v2_chr3_-_116508035_116508070	0.573199	Rfx3_Rfx1_Rfx4	ENSMUST00000153005.1|Rtca|ENSMUSG00000000339.8|RNA 3'-terminal phosphate cyclase
mm10_v2_chr11_-_101551837_101551893	0.572766	Rfx3_Rfx1_Rfx4	ENSMUST00000017290.4|Brca1|ENSMUSG00000017146.6|breast cancer 1
mm10_v2_chr6_-_91473361_91473470	0.56483	Rfx3_Rfx1_Rfx4	ENSMUST00000040835.7|Chchd4|ENSMUSG00000034203.7|coiled-coil-helix-coiled-coil-helix domain containing 4
mm10_v2_chr1_+_172481788_172481819	0.560773	Rfx3_Rfx1_Rfx4	ENSMUST00000127052.1|Igsf9|ENSMUSG00000037995.9|immunoglobulin superfamily, member 9
mm10_v2_chr15_-_83122756_83122801	0.55978	Rfx3_Rfx1_Rfx4	ENSMUST00000018184.3|Rrp7a|ENSMUSG00000018040.3|ribosomal RNA processing 7 homolog A (S. cerevisiae)
mm10_v2_chrX_+_72918557_72918612	0.557397	Rfx3_Rfx1_Rfx4	ENSMUST00000033715.4|Nsdhl|ENSMUSG00000031349.4|NAD(P) dependent steroid dehydrogenase-like
mm10_v2_chr11_+_51584757_51584821	0.555297	Rfx3_Rfx1_Rfx4	ENSMUST00000167797.1|Phykpl|ENSMUSG00000020359.7|5-phosphohydroxy-L-lysine phospholyase 	ENSMUST00000020625.6|Phykpl|ENSMUSG00000020359.7|5-phosphohydroxy-L-lysine phospholyase
mm10_v2_chr10_+_80299084_80299126	0.554912	Rfx3_Rfx1_Rfx4	ENSMUST00000154212.1|Apc2|ENSMUSG00000020135.7|adenomatosis polyposis coli 2
mm10_v2_chr2_+_112239468_112239508	0.551401	Rfx3_Rfx1_Rfx4	ENSMUST00000028554.3|Lpcat4|ENSMUSG00000027134.4|lysophosphatidylcholine acyltransferase 4
mm10_v2_chr2_+_164460945_164461018	0.547217	Rfx3_Rfx1_Rfx4	ENSMUST00000072452.4|Sys1|ENSMUSG00000045503.10|SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae)
mm10_v2_chr1_+_151428612_151428718	0.543003	Rfx3_Rfx1_Rfx4	ENSMUST00000065625.5|Trmt1l|ENSMUSG00000053286.5|tRNA methyltransferase 1 like
mm10_v2_chr17_-_36951636_36951741	0.537978	Rfx3_Rfx1_Rfx4	ENSMUST00000040402.7|Ppp1r11|ENSMUSG00000036398.7|protein phosphatase 1, regulatory (inhibitor) subunit 11 	ENSMUST00000174711.1|Ppp1r11|ENSMUSG00000036398.7|protein phosphatase 1, regulatory (inhibitor) subunit 11
mm10_v2_chr19_-_60226666_60226706	0.536433	Rfx3_Rfx1_Rfx4	ENSMUST00000065286.1|D19Ertd737e|ENSMUSG00000057858.7|DNA segment, Chr 19, ERATO Doi 737, expressed
mm10_v2_chr1_-_124045523_124045571	0.531614	Rfx3_Rfx1_Rfx4	ENSMUST00000112606.1|Dpp10|ENSMUSG00000036815.10|dipeptidylpeptidase 10
mm10_v2_chr10_-_80900749_80900969	0.528184	Rfx3_Rfx1_Rfx4	ENSMUST00000020440.6|Timm13|ENSMUSG00000020219.6|translocase of inner mitochondrial membrane 13
mm10_v2_chr2_+_29890063_29890081	0.524286	Rfx3_Rfx1_Rfx4	ENSMUST00000028128.6|Odf2|ENSMUSG00000026790.13|outer dense fiber of sperm tails 2
mm10_v2_chr9_-_124424154_124424154	0.521155	Rfx3_Rfx1_Rfx4	ENSMUST00000180270.1|Ppp2r3d|ENSMUSG00000093803.1|protein phosphatase 2 (formerly 2A), regulatory subunit B'', delta
mm10_v2_chr16_-_3908639_3908689	0.519242	Rfx3_Rfx1_Rfx4	ENSMUST00000115859.1|1700037C18Rik|ENSMUSG00000005983.9|RIKEN cDNA 1700037C18 gene
mm10_v2_chr18_+_36348653_36348728	0.519092	Rfx3_Rfx1_Rfx4	ENSMUST00000050584.3|Cystm1|ENSMUSG00000046727.6|cysteine-rich transmembrane module containing 1
mm10_v2_chr17_+_28177339_28177449	0.51199	Rfx3_Rfx1_Rfx4	ENSMUST00000073534.2|Zfp523|ENSMUSG00000024220.7|zinc finger protein 523 	ENSMUST00000002318.1|Zfp523|ENSMUSG00000024220.7|zinc finger protein 523
mm10_v2_chr1_-_124045247_124045267	0.511053	Rfx3_Rfx1_Rfx4	ENSMUST00000112603.2|Dpp10|ENSMUSG00000036815.10|dipeptidylpeptidase 10
mm10_v2_chrX_-_157568983_157568991	0.511019	Rfx3_Rfx1_Rfx4	ENSMUST00000065806.4|Yy2|ENSMUSG00000091736.2|Yy2 transcription factor
mm10_v2_chr1_+_59119822_59119861	0.507074	Rfx3_Rfx1_Rfx4	ENSMUST00000180570.1|G730003C15Rik|ENSMUSG00000097573.1|RIKEN cDNA G730003C15 gene
mm10_v2_chr17_-_34627148_34627191	0.50647	Rfx3_Rfx1_Rfx4	ENSMUST00000171376.1|Ppt2|ENSMUSG00000015474.10|palmitoyl-protein thioesterase 2 	ENSMUST00000169287.1|Ppt2|ENSMUSG00000015474.10|palmitoyl-protein thioesterase 2
mm10_v2_chr6_+_125096145_125096162	0.502778	Rfx3_Rfx1_Rfx4	ENSMUST00000112390.1|Chd4|ENSMUSG00000063870.6|chromodomain helicase DNA binding protein 4
mm10_v2_chr5_-_112228633_112228680	0.500499	Rfx3_Rfx1_Rfx4	ENSMUST00000182699.1|Miat|ENSMUSG00000097767.2|myocardial infarction associated transcript (non-protein coding) 	ENSMUST00000182258.1|Miat|ENSMUSG00000097767.2|myocardial infarction associated transcript (non-protein coding) 	ENSMUST00000183036.1|Miat|ENSMUSG00000097767.2|myocardial infarction associated transcript (non-protein coding)
mm10_v2_chr5_+_30814722_30814776	0.495684	Rfx3_Rfx1_Rfx4	ENSMUST00000114724.1|Mapre3|ENSMUSG00000029166.8|microtubule-associated protein, RP/EB family, member 3
mm10_v2_chr11_+_3895223_3895310	0.494249	Rfx3_Rfx1_Rfx4	ENSMUST00000055931.4|Dusp18|ENSMUSG00000047205.6|dual specificity phosphatase 18 	ENSMUST00000109996.1|Dusp18|ENSMUSG00000047205.6|dual specificity phosphatase 18
mm10_v2_chr11_+_109650921_109651003	0.490751	Rfx3_Rfx1_Rfx4	ENSMUST00000049527.6|Prkar1a|ENSMUSG00000020612.10|protein kinase, cAMP dependent regulatory, type I, alpha
mm10_v2_chr19_+_6363896_6363941	0.489972	Rfx3_Rfx1_Rfx4	ENSMUST00000113487.1|Sf1|ENSMUSG00000024949.11|splicing factor 1
mm10_v2_chr1_+_86154752_86154821	0.488134	Rfx3_Rfx1_Rfx4	ENSMUST00000113309.2|Armc9|ENSMUSG00000062590.7|armadillo repeat containing 9 	ENSMUST00000027434.8|Armc9|ENSMUSG00000062590.7|armadillo repeat containing 9 	ENSMUST00000131412.1|Armc9|ENSMUSG00000062590.7|armadillo repeat containing 9
mm10_v2_chr9_-_8042785_8042882	0.485092	Rfx3_Rfx1_Rfx4	ENSMUST00000065291.1|9230110C19Rik|ENSMUSG00000053070.4|RIKEN cDNA 9230110C19 gene
mm10_v2_chr17_+_56584973_56585059	0.485077	Rfx3_Rfx1_Rfx4	ENSMUST00000182533.1|Safb|ENSMUSG00000071054.6|scaffold attachment factor B 	ENSMUST00000182800.1|Safb|ENSMUSG00000071054.6|scaffold attachment factor B 	ENSMUST00000095224.4|Safb|ENSMUSG00000071054.6|scaffold attachment factor B
mm10_v2_chr9_-_72491939_72492212	0.484249	Rfx3_Rfx1_Rfx4	ENSMUST00000185151.1|Tex9|ENSMUSG00000090626.3|testis expressed gene 9 	ENSMUST00000085358.5|Tex9|ENSMUSG00000090626.3|testis expressed gene 9 	ENSMUST00000184125.1|Tex9|ENSMUSG00000090626.3|testis expressed gene 9 	ENSMUST00000183574.1|Tex9|ENSMUSG00000090626.3|testis expressed gene 9 	ENSMUST00000184831.1|Tex9|ENSMUSG00000090626.3|testis expressed gene 9
mm10_v2_chr17_-_34972124_34972158	0.481883	Rfx3_Rfx1_Rfx4	ENSMUST00000087328.2|Hspa1a|ENSMUSG00000091971.2|heat shock protein 1A 	ENSMUST00000179128.1|Hspa1a|ENSMUSG00000091971.2|heat shock protein 1A
mm10_v2_chr17_-_34118476_34118522	0.476892	Rfx3_Rfx1_Rfx4	ENSMUST00000095347.5|Brd2|ENSMUSG00000024335.13|bromodomain containing 2
mm10_v2_chr15_-_75678732_75678805	0.472637	Rfx3_Rfx1_Rfx4	ENSMUST00000000958.8|Top1mt|ENSMUSG00000000934.8|DNA topoisomerase 1, mitochondrial
mm10_v2_chr3_-_116508071_116508208	0.470194	Rfx3_Rfx1_Rfx4	ENSMUST00000000348.8|Rtca|ENSMUSG00000000339.8|RNA 3'-terminal phosphate cyclase
mm10_v2_chr8_+_122611618_122611663	0.468954	Rfx3_Rfx1_Rfx4	ENSMUST00000015157.8|Trappc2l|ENSMUSG00000015013.8|trafficking protein particle complex 2-like
mm10_v2_chr9_+_99575776_99575829	0.464049	Rfx3_Rfx1_Rfx4	ENSMUST00000066650.5|Dbr1|ENSMUSG00000032469.6|debranching enzyme homolog 1 (S. cerevisiae) 	ENSMUST00000148987.1|Dbr1|ENSMUSG00000032469.6|debranching enzyme homolog 1 (S. cerevisiae)
mm10_v2_chr1_+_20951666_20951717	0.46291	Rfx3_Rfx1_Rfx4	ENSMUST00000038447.4|Efhc1|ENSMUSG00000041809.4|EF-hand domain (C-terminal) containing 1
mm10_v2_chr18_-_31609893_31609927	0.462509	Rfx3_Rfx1_Rfx4	ENSMUST00000060396.6|Slc25a46|ENSMUSG00000024259.8|solute carrier family 25, member 46
mm10_v2_chr18_-_24020749_24020813	0.461222	Rfx3_Rfx1_Rfx4	ENSMUST00000066497.5|Zfp191|ENSMUSG00000051469.8|zinc finger protein 191
mm10_v2_chr11_-_78536235_78536332	0.461217	Rfx3_Rfx1_Rfx4	ENSMUST00000017759.2|Tnfaip1|ENSMUSG00000017615.6|tumor necrosis factor, alpha-induced protein 1 (endothelial) 	ENSMUST00000108277.2|Tnfaip1|ENSMUSG00000017615.6|tumor necrosis factor, alpha-induced protein 1 (endothelial)
mm10_v2_chr8_-_111933761_111933816	0.460802	Rfx3_Rfx1_Rfx4	ENSMUST00000034429.7|Tmem231|ENSMUSG00000031951.7|transmembrane protein 231
mm10_v2_chr8_+_47713266_47713266	0.457141	Rfx3_Rfx1_Rfx4	ENSMUST00000180928.1|E030037K01Rik|ENSMUSG00000097706.1|RIKEN cDNA E030037K01 gene
mm10_v2_chr1_+_182124737_182124800	0.448663	Rfx3_Rfx1_Rfx4	ENSMUST00000111018.1|Srp9|ENSMUSG00000026511.6|signal recognition particle 9 	ENSMUST00000027792.5|Srp9|ENSMUSG00000026511.6|signal recognition particle 9
mm10_v2_chr8_+_94984399_94984477	0.444125	Rfx3_Rfx1_Rfx4	ENSMUST00000093271.6|Gpr56|ENSMUSG00000031785.9|G protein-coupled receptor 56
mm10_v2_chr9_+_46012810_46012821	0.440708	Rfx3_Rfx1_Rfx4	ENSMUST00000126865.1|Sik3|ENSMUSG00000034135.8|SIK family kinase 3
mm10_v2_chr11_-_29247208_29247409	0.439888	Rfx3_Rfx1_Rfx4	ENSMUST00000020754.3|Ccdc104|ENSMUSG00000020462.8|coiled-coil domain containing 104
mm10_v2_chr5_+_130187158_130187166	0.437259	Rfx3_Rfx1_Rfx4	ENSMUST00000119027.1|Rabgef1|ENSMUSG00000025340.8|RAB guanine nucleotide exchange factor (GEF) 1 	ENSMUST00000026390.7|Rabgef1|ENSMUSG00000025340.8|RAB guanine nucleotide exchange factor (GEF) 1
mm10_v2_chr15_-_36794498_36794547	0.434021	Rfx3_Rfx1_Rfx4	ENSMUST00000110361.1|Ywhaz|ENSMUSG00000022285.10|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide 	ENSMUST00000022894.7|Ywhaz|ENSMUSG00000022285.10|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide 	ENSMUST00000110359.1|Ywhaz|ENSMUSG00000022285.10|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide
mm10_v2_chr4_+_40722912_40723001	0.433611	Rfx3_Rfx1_Rfx4	ENSMUST00000164233.1|Dnaja1|ENSMUSG00000028410.7|DnaJ (Hsp40) homolog, subfamily A, member 1 	ENSMUST00000137246.1|Dnaja1|ENSMUSG00000028410.7|DnaJ (Hsp40) homolog, subfamily A, member 1 	ENSMUST00000125442.1|Dnaja1|ENSMUSG00000028410.7|DnaJ (Hsp40) homolog, subfamily A, member 1
mm10_v2_chr8_-_94918012_94918098	0.432683	Rfx3_Rfx1_Rfx4	ENSMUST00000077955.5|Ccdc102a|ENSMUSG00000063605.5|coiled-coil domain containing 102A
mm10_v2_chr19_-_10555724_10555761	0.429516	Rfx3_Rfx1_Rfx4	ENSMUST00000145210.1|Tmem216|ENSMUSG00000024667.5|transmembrane protein 216 	ENSMUST00000123788.1|Tmem216|ENSMUSG00000024667.5|transmembrane protein 216 	ENSMUST00000059582.2|Tmem216|ENSMUSG00000024667.5|transmembrane protein 216 	ENSMUST00000154383.1|Tmem216|ENSMUSG00000024667.5|transmembrane protein 216
mm10_v2_chr11_-_101278927_101279114	0.427712	Rfx3_Rfx1_Rfx4	ENSMUST00000168089.1|Coa3|ENSMUSG00000017188.3|cytochrome C oxidase assembly factor 3 	ENSMUST00000017332.3|Coa3|ENSMUSG00000017188.3|cytochrome C oxidase assembly factor 3
mm10_v2_chr19_-_6942406_6942450	0.42751	Rfx3_Rfx1_Rfx4	ENSMUST00000099782.3|Gpr137|ENSMUSG00000024958.6|G protein-coupled receptor 137
mm10_v2_chr18_+_36348739_36348779	0.427285	Rfx3_Rfx1_Rfx4	ENSMUST00000152804.2|Cystm1|ENSMUSG00000046727.6|cysteine-rich transmembrane module containing 1
mm10_v2_chr2_+_91922178_91922194	0.426659	Rfx3_Rfx1_Rfx4	ENSMUST00000170432.1|Chrm4|ENSMUSG00000040495.3|cholinergic receptor, muscarinic 4
mm10_v2_chr2_+_29889217_29889243	0.423588	Rfx3_Rfx1_Rfx4	ENSMUST00000123335.1|Odf2|ENSMUSG00000026790.13|outer dense fiber of sperm tails 2
mm10_v2_chr1_+_152766540_152766551	0.423045	Rfx3_Rfx1_Rfx4	ENSMUST00000077755.5|Arpc5|ENSMUSG00000008475.7|actin related protein 2/3 complex, subunit 5 	ENSMUST00000097536.4|Arpc5|ENSMUSG00000008475.7|actin related protein 2/3 complex, subunit 5
mm10_v2_chr2_+_163017354_163017513	0.419822	Rfx3_Rfx1_Rfx4	ENSMUST00000018002.6|Ift52|ENSMUSG00000017858.6|intraflagellar transport 52 	ENSMUST00000150396.1|Ift52|ENSMUSG00000017858.6|intraflagellar transport 52
mm10_v2_chr4_-_141874879_141874953	0.411745	Rfx3_Rfx1_Rfx4	ENSMUST00000036854.3|Efhd2|ENSMUSG00000040659.3|EF hand domain containing 2
mm10_v2_chr19_-_4906598_4906632	0.407941	Rfx3_Rfx1_Rfx4	ENSMUST00000053506.6|Bbs1|ENSMUSG00000006464.8|Bardet-Biedl syndrome 1 (human)
mm10_v2_chr9_+_98563704_98563737	0.405378	Rfx3_Rfx1_Rfx4	ENSMUST00000035033.5|Copb2|ENSMUSG00000032458.5|coatomer protein complex, subunit beta 2 (beta prime)
mm10_v2_chr4_-_12087912_12088011	0.396784	Rfx3_Rfx1_Rfx4	ENSMUST00000050686.3|Tmem67|ENSMUSG00000049488.8|transmembrane protein 67
mm10_v2_chrX_-_49788204_49788243	0.396574	Rfx3_Rfx1_Rfx4	ENSMUST00000114893.1|Igsf1|ENSMUSG00000031111.10|immunoglobulin superfamily, member 1
mm10_v2_chr18_+_63708689_63708730	0.396114	Rfx3_Rfx1_Rfx4	ENSMUST00000072726.5|Wdr7|ENSMUSG00000040560.9|WD repeat domain 7
mm10_v2_chr7_+_126487344_126487390	0.3935	Rfx3_Rfx1_Rfx4	ENSMUST00000098048.4|Tufm|ENSMUSG00000073838.4|Tu translation elongation factor, mitochondrial 	ENSMUST00000106392.3|Tufm|ENSMUSG00000073838.4|Tu translation elongation factor, mitochondrial
mm10_v2_chr17_+_8165501_8165540	0.392332	Rfx3_Rfx1_Rfx4	ENSMUST00000097419.3|Fgfr1op|ENSMUSG00000069135.5|Fgfr1 oncogene partner 	ENSMUST00000024636.8|Fgfr1op|ENSMUSG00000069135.5|Fgfr1 oncogene partner
mm10_v2_chr3_-_127225847_127225915	0.391059	Rfx3_Rfx1_Rfx4	ENSMUST00000182726.1|Ank2|ENSMUSG00000032826.10|ankyrin 2, brain 	ENSMUST00000182779.1|Ank2|ENSMUSG00000032826.10|ankyrin 2, brain
mm10_v2_chr9_-_59486610_59486621	0.390007	Rfx3_Rfx1_Rfx4	ENSMUST00000171975.1|Arih1|ENSMUSG00000025234.5|ariadne ubiquitin-conjugating enzyme E2 binding protein homolog 1 (Drosophila)
mm10_v2_chr2_-_36136602_36136625	0.389693	Rfx3_Rfx1_Rfx4	ENSMUST00000122456.1|Rbm18|ENSMUSG00000026889.6|RNA binding motif protein 18
mm10_v2_chr4_-_55532453_55532485	0.387916	Rfx3_Rfx1_Rfx4	ENSMUST00000132746.1|Klf4|ENSMUSG00000003032.8|Kruppel-like factor 4 (gut) 	ENSMUST00000107619.2|Klf4|ENSMUSG00000003032.8|Kruppel-like factor 4 (gut)
mm10_v2_chr4_-_41723129_41723179	0.386687	Rfx3_Rfx1_Rfx4	ENSMUST00000171641.1|Dctn3|ENSMUSG00000028447.5|dynactin 3 	ENSMUST00000030158.4|Dctn3|ENSMUSG00000028447.5|dynactin 3
mm10_v2_chr5_-_139460501_139460549	0.386403	Rfx3_Rfx1_Rfx4	ENSMUST00000066052.7|3110082I17Rik|ENSMUSG00000053553.7|RIKEN cDNA 3110082I17 gene
mm10_v2_chr2_+_164746028_164746039	0.384237	Rfx3_Rfx1_Rfx4	ENSMUST00000109327.3|Dnttip1|ENSMUSG00000017299.7|deoxynucleotidyltransferase, terminal, interacting protein 1
mm10_v2_chr7_+_140881898_140881968	0.379671	Rfx3_Rfx1_Rfx4	ENSMUST00000026560.7|Psmd13|ENSMUSG00000025487.8|proteasome (prosome, macropain) 26S subunit, non-ATPase, 13
mm10_v2_chr9_+_95637601_95637632	0.379572	Rfx3_Rfx1_Rfx4	ENSMUST00000015498.8|Pcolce2|ENSMUSG00000015354.8|procollagen C-endopeptidase enhancer 2
mm10_v2_chr15_-_75841907_75841932	0.3762	Rfx3_Rfx1_Rfx4	ENSMUST00000100538.2|Zc3h3|ENSMUSG00000075600.2|zinc finger CCCH type containing 3
mm10_v2_chr1_+_156366037_156366044	0.373873	Rfx3_Rfx1_Rfx4	ENSMUST00000102782.3|Gm2000|ENSMUSG00000078193.2|predicted gene 2000
mm10_v2_chr14_-_56778301_56778352	0.371117	Rfx3_Rfx1_Rfx4	ENSMUST00000022507.5|Pspc1|ENSMUSG00000021938.5|paraspeckle protein 1 	ENSMUST00000163924.1|Pspc1|ENSMUSG00000021938.5|paraspeckle protein 1
mm10_v2_chr5_-_41708135_41708170	0.369267	Rfx3_Rfx1_Rfx4	ENSMUST00000031011.8|Rab28|ENSMUSG00000029128.9|RAB28, member RAS oncogene family
mm10_v2_chr4_-_121017201_121017261	0.367264	Rfx3_Rfx1_Rfx4	ENSMUST00000043200.7|Smap2|ENSMUSG00000032870.8|small ArfGAP 2
mm10_v2_chr14_+_11227511_11227552	0.359963	Rfx3_Rfx1_Rfx4	ENSMUST00000080237.3|Rpl21-ps4|ENSMUSG00000072714.1|ribosomal protein L21, pseudogene 4
mm10_v2_chr17_-_55915870_55915870	0.358043	Rfx3_Rfx1_Rfx4	ENSMUST00000074828.4|Rpl21-ps6|ENSMUSG00000059912.4|ribosomal protein L21, pseudogene 6
mm10_v2_chr15_+_31276491_31276491	0.35388	Rfx3_Rfx1_Rfx4	ENSMUST00000068987.5|Fam136b-ps|ENSMUSG00000055416.5|family with sequence similarity 136, member B, pseudogene
mm10_v2_chr4_-_149426603_149426749	0.351124	Rfx3_Rfx1_Rfx4	ENSMUST00000103212.3|Ube4b|ENSMUSG00000028960.12|ubiquitination factor E4B, UFD2 homolog (S. cerevisiae)
mm10_v2_chr3_-_144720315_144720336	0.351036	Rfx3_Rfx1_Rfx4	ENSMUST00000163279.1|Sh3glb1|ENSMUSG00000037062.9|SH3-domain GRB2-like B1 (endophilin)
mm10_v2_chr7_-_68749170_68749241	0.349989	Rfx3_Rfx1_Rfx4	ENSMUST00000118110.1|Arrdc4|ENSMUSG00000042659.8|arrestin domain containing 4 	ENSMUST00000048068.7|Arrdc4|ENSMUSG00000042659.8|arrestin domain containing 4
mm10_v2_chr9_+_44072196_44072211	0.348029	Rfx3_Rfx1_Rfx4	ENSMUST00000176671.1|Usp2|ENSMUSG00000032010.8|ubiquitin specific peptidase 2
mm10_v2_chr19_+_3282901_3283071	0.34688	Rfx3_Rfx1_Rfx4	ENSMUST00000025745.3|Mrpl21|ENSMUSG00000024829.6|mitochondrial ribosomal protein L21 	ENSMUST00000025743.6|Mrpl21|ENSMUSG00000024829.6|mitochondrial ribosomal protein L21
mm10_v2_chr4_+_6365650_6365720	0.346218	Rfx3_Rfx1_Rfx4	ENSMUST00000029912.4|Sdcbp|ENSMUSG00000028249.9|syndecan binding protein 	ENSMUST00000103008.5|Sdcbp|ENSMUSG00000028249.9|syndecan binding protein 	ENSMUST00000175769.1|Sdcbp|ENSMUSG00000028249.9|syndecan binding protein 	ENSMUST00000108374.1|Sdcbp|ENSMUSG00000028249.9|syndecan binding protein 	ENSMUST00000140830.1|Sdcbp|ENSMUSG00000028249.9|syndecan binding protein
mm10_v2_chr17_+_56717759_56717819	0.346069	Rfx3_Rfx1_Rfx4	ENSMUST00000002452.6|Ndufa11|ENSMUSG00000002379.6|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 11
mm10_v2_chr5_+_122372451_122372513	0.345663	Rfx3_Rfx1_Rfx4	ENSMUST00000031420.4|Gpn3|ENSMUSG00000029464.4|GPN-loop GTPase 3
mm10_v2_chr17_-_53463315_53463340	0.34565	Rfx3_Rfx1_Rfx4	ENSMUST00000024725.4|Efhb|ENSMUSG00000023931.4|EF hand domain family, member B
mm10_v2_chr8_-_85555261_85555315	0.343138	Rfx3_Rfx1_Rfx4	ENSMUST00000034138.5|Dnaja2|ENSMUSG00000031701.5|DnaJ (Hsp40) homolog, subfamily A, member 2
mm10_v2_chr4_+_10874498_10874607	0.339912	Rfx3_Rfx1_Rfx4	ENSMUST00000080517.7|2610301B20Rik|ENSMUSG00000059482.9|RIKEN cDNA 2610301B20 gene 	ENSMUST00000101504.2|2610301B20Rik|ENSMUSG00000059482.9|RIKEN cDNA 2610301B20 gene
mm10_v2_chr17_-_57011271_57011326	0.339882	Rfx3_Rfx1_Rfx4	ENSMUST00000002733.6|Gtf2f1|ENSMUSG00000002658.9|general transcription factor IIF, polypeptide 1
mm10_v2_chr6_-_33060256_33060267	0.339222	Rfx3_Rfx1_Rfx4	ENSMUST00000066379.4|Chchd3|ENSMUSG00000053768.7|coiled-coil-helix-coiled-coil-helix domain containing 3
mm10_v2_chr11_-_120467414_120467600	0.33435	Rfx3_Rfx1_Rfx4	ENSMUST00000076921.6|Arl16|ENSMUSG00000057594.6|ADP-ribosylation factor-like 16
mm10_v2_chr5_-_122372230_122372390	0.333044	Rfx3_Rfx1_Rfx4	ENSMUST00000031419.5|Fam216a|ENSMUSG00000029463.5|family with sequence similarity 216, member A
mm10_v2_chr11_-_100619576_100619596	0.332746	Rfx3_Rfx1_Rfx4	ENSMUST00000155152.1|Dnajc7|ENSMUSG00000014195.9|DnaJ (Hsp40) homolog, subfamily C, member 7
mm10_v2_chr6_+_83109071_83109114	0.331812	Rfx3_Rfx1_Rfx4	ENSMUST00000113938.3|Mrpl53|ENSMUSG00000030037.8|mitochondrial ribosomal protein L53
mm10_v2_chr17_-_36951338_36951425	0.330238	Rfx3_Rfx1_Rfx4	ENSMUST00000173540.1|Ppp1r11|ENSMUSG00000036398.7|protein phosphatase 1, regulatory (inhibitor) subunit 11
mm10_v2_chr7_+_3303503_3303565	0.324892	Rfx3_Rfx1_Rfx4	ENSMUST00000100301.4|Prkcg|ENSMUSG00000078816.3|protein kinase C, gamma
mm10_v2_chr15_-_79141197_79141268	0.324811	Rfx3_Rfx1_Rfx4	ENSMUST00000169604.1|1700088E04Rik|ENSMUSG00000033029.6|RIKEN cDNA 1700088E04 gene
mm10_v2_chr2_-_36049365_36049406	0.323262	Rfx3_Rfx1_Rfx4	ENSMUST00000070112.5|Ndufa8|ENSMUSG00000026895.7|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 8
mm10_v2_chr8_-_83458386_83458397	0.320542	Rfx3_Rfx1_Rfx4	ENSMUST00000081506.3|Scoc|ENSMUSG00000063253.4|short coiled-coil protein
mm10_v2_chr11_+_76407143_76407201	0.319506	Rfx3_Rfx1_Rfx4	ENSMUST00000021203.6|Timm22|ENSMUSG00000020843.9|translocase of inner mitochondrial membrane 22 	ENSMUST00000152183.1|Timm22|ENSMUSG00000020843.9|translocase of inner mitochondrial membrane 22
mm10_v2_chr16_-_31275277_31275290	0.319201	Rfx3_Rfx1_Rfx4	ENSMUST00000060188.7|Ppp1r2|ENSMUSG00000047714.8|protein phosphatase 1, regulatory (inhibitor) subunit 2
mm10_v2_chr6_-_90428401_90428480	0.317644	Rfx3_Rfx1_Rfx4	ENSMUST00000062750.5|Ccdc37|ENSMUSG00000048794.8|coiled-coil domain containing 37 	ENSMUST00000165673.1|Ccdc37|ENSMUSG00000048794.8|coiled-coil domain containing 37
mm10_v2_chr15_+_59315088_59315128	0.316824	Rfx3_Rfx1_Rfx4	ENSMUST00000100640.4|Sqle|ENSMUSG00000022351.8|squalene epoxidase
mm10_v2_chr1_+_93685574_93685694	0.315495	Rfx3_Rfx1_Rfx4	ENSMUST00000027499.6|Bok|ENSMUSG00000026278.8|BCL2-related ovarian killer protein
mm10_v2_chr7_+_19076242_19076273	0.314283	Rfx3_Rfx1_Rfx4	ENSMUST00000032570.7|Dmwd|ENSMUSG00000030410.10|dystrophia myotonica-containing WD repeat motif 	ENSMUST00000108479.1|Dmwd|ENSMUSG00000030410.10|dystrophia myotonica-containing WD repeat motif
mm10_v2_chr11_-_60115226_60115237	0.313137	Rfx3_Rfx1_Rfx4	ENSMUST00000130746.1|4930412M03Rik|ENSMUSG00000051008.5|RIKEN cDNA 4930412M03 gene
mm10_v2_chr9_-_64341288_64341311	0.311666	Rfx3_Rfx1_Rfx4	ENSMUST00000068367.7|Dis3l|ENSMUSG00000032396.11|DIS3 mitotic control homolog (S. cerevisiae)-like
mm10_v2_chr15_+_78428650_78428671	0.308709	Rfx3_Rfx1_Rfx4	ENSMUST00000159771.1|Kctd17|ENSMUSG00000033287.9|potassium channel tetramerisation domain containing 17
mm10_v2_chr9_+_107563246_107563285	0.308374	Rfx3_Rfx1_Rfx4	ENSMUST00000010198.3|Tusc2|ENSMUSG00000010054.3|tumor suppressor candidate 2
mm10_v2_chr12_+_113140198_113140257	0.307893	Rfx3_Rfx1_Rfx4	ENSMUST00000084882.4|Crip2|ENSMUSG00000006356.6|cysteine rich protein 2
mm10_v2_chr2_+_85037212_85037302	0.3067	Rfx3_Rfx1_Rfx4	ENSMUST00000077798.6|Ssrp1|ENSMUSG00000027067.10|structure specific recognition protein 1
mm10_v2_chr10_-_42018363_42018436	0.30569	Rfx3_Rfx1_Rfx4	ENSMUST00000162405.1|Armc2|ENSMUSG00000071324.5|armadillo repeat containing 2 	ENSMUST00000095729.4|Armc2|ENSMUSG00000071324.5|armadillo repeat containing 2 	ENSMUST00000161081.1|Armc2|ENSMUSG00000071324.5|armadillo repeat containing 2 	ENSMUST00000160262.2|Armc2|ENSMUSG00000071324.5|armadillo repeat containing 2
mm10_v2_chr11_+_114668524_114668626	0.301627	Rfx3_Rfx1_Rfx4	ENSMUST00000106602.3|Rpl38|ENSMUSG00000057322.6|ribosomal protein L38 	ENSMUST00000077915.3|Rpl38|ENSMUSG00000057322.6|ribosomal protein L38 	ENSMUST00000106599.1|Rpl38|ENSMUSG00000057322.6|ribosomal protein L38 	ENSMUST00000082092.4|Rpl38|ENSMUSG00000057322.6|ribosomal protein L38
mm10_v2_chr6_+_137735078_137735151	0.301522	Rfx3_Rfx1_Rfx4	ENSMUST00000064910.6|Strap|ENSMUSG00000030224.10|serine/threonine kinase receptor associated protein
mm10_v2_chr2_+_152427639_152427699	0.301456	Rfx3_Rfx1_Rfx4	ENSMUST00000128737.1|6820408C15Rik|ENSMUSG00000032680.5|RIKEN cDNA 6820408C15 gene
mm10_v2_chr7_-_99141068_99141149	0.300345	Rfx3_Rfx1_Rfx4	ENSMUST00000037968.8|Uvrag|ENSMUSG00000035354.8|UV radiation resistance associated gene
mm10_v2_chr11_-_85850333_85850333	0.300052	Rfx3_Rfx1_Rfx4	ENSMUST00000146433.1|Gm11444|ENSMUSG00000069785.4|predicted gene 11444
mm10_v2_chr4_+_134102581_134102618	0.297898	Rfx3_Rfx1_Rfx4	ENSMUST00000074690.4|Ubxn11|ENSMUSG00000012126.10|UBX domain protein 11 	ENSMUST00000070246.2|Ubxn11|ENSMUSG00000012126.10|UBX domain protein 11 	ENSMUST00000156750.1|Ubxn11|ENSMUSG00000012126.10|UBX domain protein 11
mm10_v2_chr4_-_117872520_117872560	0.296233	Rfx3_Rfx1_Rfx4	ENSMUST00000171052.1|Ccdc24|ENSMUSG00000078588.4|coiled-coil domain containing 24 	ENSMUST00000166325.1|Ccdc24|ENSMUSG00000078588.4|coiled-coil domain containing 24 	ENSMUST00000106422.2|Ccdc24|ENSMUSG00000078588.4|coiled-coil domain containing 24
mm10_v2_chr5_-_107987003_107987085	0.294846	Rfx3_Rfx1_Rfx4	ENSMUST00000145239.1|Fam69a|ENSMUSG00000029270.4|family with sequence similarity 69, member A 	ENSMUST00000031198.4|Fam69a|ENSMUSG00000029270.4|family with sequence similarity 69, member A
mm10_v2_chr7_+_140882430_140882472	0.293888	Rfx3_Rfx1_Rfx4	ENSMUST00000164681.1|Psmd13|ENSMUSG00000025487.8|proteasome (prosome, macropain) 26S subunit, non-ATPase, 13 	ENSMUST00000163610.1|Psmd13|ENSMUSG00000025487.8|proteasome (prosome, macropain) 26S subunit, non-ATPase, 13
mm10_v2_chr5_-_149636331_149636376	0.292932	Rfx3_Rfx1_Rfx4	ENSMUST00000074846.7|Hsph1|ENSMUSG00000029657.9|heat shock 105kDa/110kDa protein 1 	ENSMUST00000110498.1|Hsph1|ENSMUSG00000029657.9|heat shock 105kDa/110kDa protein 1 	ENSMUST00000127977.1|Hsph1|ENSMUSG00000029657.9|heat shock 105kDa/110kDa protein 1 	ENSMUST00000132412.1|Hsph1|ENSMUSG00000029657.9|heat shock 105kDa/110kDa protein 1
mm10_v2_chr7_-_109438998_109439017	0.290965	Rfx3_Rfx1_Rfx4	ENSMUST00000121378.1|Stk33|ENSMUSG00000031027.9|serine/threonine kinase 33
mm10_v2_chr5_-_124187150_124187225	0.290873	Rfx3_Rfx1_Rfx4	ENSMUST00000161938.1|Pitpnm2|ENSMUSG00000029406.9|phosphatidylinositol transfer protein, membrane-associated 2
mm10_v2_chr2_-_30048827_30048891	0.287924	Rfx3_Rfx1_Rfx4	ENSMUST00000113711.2|Wdr34|ENSMUSG00000039715.8|WD repeat domain 34
mm10_v2_chr13_-_108158584_108158630	0.285943	Rfx3_Rfx1_Rfx4	ENSMUST00000163558.1|Ndufaf2|ENSMUSG00000068184.6|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 2
mm10_v2_chr14_-_54253907_54253920	0.279982	Rfx3_Rfx1_Rfx4	ENSMUST00000128231.1|Dad1|ENSMUSG00000022174.8|defender against cell death 1
mm10_v2_chr10_+_58497918_58497970	0.279502	Rfx3_Rfx1_Rfx4	ENSMUST00000036576.8|Ccdc138|ENSMUSG00000038010.8|coiled-coil domain containing 138
mm10_v2_chr1_-_75180349_75180407	0.273543	Rfx3_Rfx1_Rfx4	ENSMUST00000027396.8|Abcb6|ENSMUSG00000026198.9|ATP-binding cassette, sub-family B (MDR/TAP), member 6
mm10_v2_chr7_+_27473761_27473773	0.27332	Rfx3_Rfx1_Rfx4	ENSMUST00000068641.6|Sertad3|ENSMUSG00000055200.6|SERTA domain containing 3
mm10_v2_chr10_-_117063764_117063814	0.273314	Rfx3_Rfx1_Rfx4	ENSMUST00000047672.7|Cct2|ENSMUSG00000034024.7|chaperonin containing Tcp1, subunit 2 (beta)
mm10_v2_chr3_-_34351685_34351715	0.271176	Rfx3_Rfx1_Rfx4	ENSMUST00000174114.1|Gm20514|ENSMUSG00000092355.1|predicted gene 20514
mm10_v2_chr17_+_47785720_47785739	0.267232	Rfx3_Rfx1_Rfx4	ENSMUST00000024786.7|Tfeb|ENSMUSG00000023990.12|transcription factor EB
mm10_v2_chr11_+_97801917_97801998	0.267185	Rfx3_Rfx1_Rfx4	ENSMUST00000127033.2|Lasp1|ENSMUSG00000038366.9|LIM and SH3 protein 1
mm10_v2_chr12_+_105032638_105032705	0.267168	Rfx3_Rfx1_Rfx4	ENSMUST00000021522.3|Glrx5|ENSMUSG00000021102.3|glutaredoxin 5 homolog (S. cerevisiae)
mm10_v2_chr9_+_105395348_105395411	0.266428	Rfx3_Rfx1_Rfx4	ENSMUST00000035181.3|Aste1|ENSMUSG00000032567.8|asteroid homolog 1 (Drosophila)
mm10_v2_chr16_+_35770382_35770396	0.264875	Rfx3_Rfx1_Rfx4	ENSMUST00000023555.4|Hspbap1|ENSMUSG00000022849.4|Hspb associated protein 1
mm10_v2_chr3_+_65109343_65109420	0.263217	Rfx3_Rfx1_Rfx4	ENSMUST00000159525.1|Kcnab1|ENSMUSG00000027827.10|potassium voltage-gated channel, shaker-related subfamily, beta member 1 	ENSMUST00000049230.8|Kcnab1|ENSMUSG00000027827.10|potassium voltage-gated channel, shaker-related subfamily, beta member 1
mm10_v2_chr16_+_17619503_17619517	0.262852	Rfx3_Rfx1_Rfx4	ENSMUST00000165092.1|Smpd4|ENSMUSG00000005899.6|sphingomyelin phosphodiesterase 4
mm10_v2_chr17_+_35241838_35241870	0.262774	Rfx3_Rfx1_Rfx4	ENSMUST00000173731.1|Ddx39b|ENSMUSG00000019432.9|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B
mm10_v2_chr12_-_110682606_110682623	0.257655	Rfx3_Rfx1_Rfx4	ENSMUST00000070659.5|1700001K19Rik|ENSMUSG00000056508.5|RIKEN cDNA 1700001K19 gene
mm10_v2_chr5_+_135725713_135725740	0.257352	Rfx3_Rfx1_Rfx4	ENSMUST00000127096.1|Por|ENSMUSG00000005514.8|P450 (cytochrome) oxidoreductase
mm10_v2_chr5_+_38039224_38039299	0.247476	Rfx3_Rfx1_Rfx4	ENSMUST00000031008.6|Stx18|ENSMUSG00000029125.8|syntaxin 18 	ENSMUST00000042146.8|Stx18|ENSMUSG00000029125.8|syntaxin 18 	ENSMUST00000154929.1|Stx18|ENSMUSG00000029125.8|syntaxin 18
mm10_v2_chr14_+_58893465_58893506	0.247349	Rfx3_Rfx1_Rfx4	ENSMUST00000079960.1|Rpl13-ps3|ENSMUSG00000059835.1|ribosomal protein L13, pseudogene 3
mm10_v2_chr4_+_129600670_129600715	0.24376	Rfx3_Rfx1_Rfx4	ENSMUST00000102591.3|Tmem234|ENSMUSG00000028797.14|transmembrane protein 234 	ENSMUST00000181579.1|Tmem234|ENSMUSG00000028797.14|transmembrane protein 234 	ENSMUST00000173758.1|Tmem234|ENSMUSG00000028797.14|transmembrane protein 234
mm10_v2_chr2_-_101628930_101628954	0.243277	Rfx3_Rfx1_Rfx4	ENSMUST00000099682.2|B230118H07Rik|ENSMUSG00000027165.10|RIKEN cDNA B230118H07 gene
mm10_v2_chr12_-_110889119_110889145	0.242909	Rfx3_Rfx1_Rfx4	ENSMUST00000043716.8|Cinp|ENSMUSG00000021276.9|cyclin-dependent kinase 2 interacting protein
mm10_v2_chr15_+_103272893_103272911	0.239799	Rfx3_Rfx1_Rfx4	ENSMUST00000100162.3|Copz1|ENSMUSG00000060992.8|coatomer protein complex, subunit zeta 1
mm10_v2_chr4_-_152477433_152477549	0.2389	Rfx3_Rfx1_Rfx4	ENSMUST00000159186.1|Kcnab2|ENSMUSG00000028931.5|potassium voltage-gated channel, shaker-related subfamily, beta member 2 	ENSMUST00000162017.1|Kcnab2|ENSMUSG00000028931.5|potassium voltage-gated channel, shaker-related subfamily, beta member 2 	ENSMUST00000030768.2|Kcnab2|ENSMUSG00000028931.5|potassium voltage-gated channel, shaker-related subfamily, beta member 2
mm10_v2_chr6_+_91473695_91473787	0.238005	Rfx3_Rfx1_Rfx4	ENSMUST00000032183.4|Tmem43|ENSMUSG00000030095.4|transmembrane protein 43
mm10_v2_chr7_+_24547150_24547244	0.237943	Rfx3_Rfx1_Rfx4	ENSMUST00000063249.8|Xrcc1|ENSMUSG00000051768.8|X-ray repair complementing defective repair in Chinese hamster cells 1
mm10_v2_chr4_-_133545906_133546011	0.235338	Rfx3_Rfx1_Rfx4	ENSMUST00000030665.6|Nudc|ENSMUSG00000028851.6|nuclear distribution gene C homolog (Aspergillus)
mm10_v2_chr17_+_24896488_24896530	0.229305	Rfx3_Rfx1_Rfx4	ENSMUST00000024978.6|Nme3|ENSMUSG00000073435.4|NME/NM23 nucleoside diphosphate kinase 3
mm10_v2_chr8_+_124231359_124231450	0.227466	Rfx3_Rfx1_Rfx4	ENSMUST00000034458.8|Galnt2|ENSMUSG00000089704.3|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2
mm10_v2_chr2_-_131175201_131175201	0.223514	Rfx3_Rfx1_Rfx4	ENSMUST00000110218.2|Spef1|ENSMUSG00000027329.3|sperm flagellar 1
mm10_v2_chr9_+_46282997_46283024	0.223145	Rfx3_Rfx1_Rfx4	ENSMUST00000074957.3|Bud13|ENSMUSG00000032077.4|BUD13 homolog (yeast)
mm10_v2_chr8_+_33732049_33732137	0.219347	Rfx3_Rfx1_Rfx4	ENSMUST00000167264.1|Gtf2e2|ENSMUSG00000031585.7|general transcription factor II E, polypeptide 2 (beta subunit)
mm10_v2_chr8_+_33731867_33731946	0.208642	Rfx3_Rfx1_Rfx4	ENSMUST00000170705.1|Gtf2e2|ENSMUSG00000031585.7|general transcription factor II E, polypeptide 2 (beta subunit)
mm10_v2_chr18_-_24020307_24020370	0.207724	Rfx3_Rfx1_Rfx4	ENSMUST00000153337.1|Zfp191|ENSMUSG00000051469.8|zinc finger protein 191 	ENSMUST00000148525.1|Zfp191|ENSMUSG00000051469.8|zinc finger protein 191
mm10_v2_chr14_+_32085804_32085877	0.207271	Rfx3_Rfx1_Rfx4	ENSMUST00000170600.1|Oxnad1|ENSMUSG00000021906.7|oxidoreductase NAD-binding domain containing 1 	ENSMUST00000168986.1|Oxnad1|ENSMUSG00000021906.7|oxidoreductase NAD-binding domain containing 1 	ENSMUST00000169649.1|Oxnad1|ENSMUSG00000021906.7|oxidoreductase NAD-binding domain containing 1
mm10_v2_chr8_+_72219726_72219785	0.206435	Rfx3_Rfx1_Rfx4	ENSMUST00000003123.8|Fam32a|ENSMUSG00000003039.8|family with sequence similarity 32, member A
mm10_v2_chr17_+_33555719_33555796	0.205361	Rfx3_Rfx1_Rfx4	ENSMUST00000087605.5|Myo1f|ENSMUSG00000024300.10|myosin IF 	ENSMUST00000174695.1|Myo1f|ENSMUSG00000024300.10|myosin IF
mm10_v2_chr5_+_136987019_136987019	0.201395	Rfx3_Rfx1_Rfx4	ENSMUST00000004968.4|Plod3|ENSMUSG00000004846.4|procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3
mm10_v2_chr10_-_80742211_80742280	0.200235	Rfx3_Rfx1_Rfx4	ENSMUST00000020420.7|Ap3d1|ENSMUSG00000020198.7|adaptor-related protein complex 3, delta 1 subunit
mm10_v2_chr11_-_5878207_5878292	0.199652	Rfx3_Rfx1_Rfx4	ENSMUST00000102922.3|Pold2|ENSMUSG00000020471.5|polymerase (DNA directed), delta 2, regulatory subunit
mm10_v2_chr1_-_164307443_164307503	0.197115	Rfx3_Rfx1_Rfx4	ENSMUST00000027866.4|Blzf1|ENSMUSG00000026577.7|basic leucine zipper nuclear factor 1 	ENSMUST00000120447.1|Blzf1|ENSMUSG00000026577.7|basic leucine zipper nuclear factor 1 	ENSMUST00000086032.3|Blzf1|ENSMUSG00000026577.7|basic leucine zipper nuclear factor 1
mm10_v2_chr2_-_90904827_90904940	0.196972	Rfx3_Rfx1_Rfx4	ENSMUST00000005647.3|Ndufs3|ENSMUSG00000005510.3|NADH dehydrogenase (ubiquinone) Fe-S protein 3
mm10_v2_chr8_-_69890967_69890967	0.196497	Rfx3_Rfx1_Rfx4	ENSMUST00000152938.1|Yjefn3|ENSMUSG00000048967.9|YjeF N-terminal domain containing 3
mm10_v2_chr7_+_122067164_122067216	0.195457	Rfx3_Rfx1_Rfx4	ENSMUST00000033158.4|Ubfd1|ENSMUSG00000030870.6|ubiquitin family domain containing 1
mm10_v2_chr2_+_85037448_85037530	0.195125	Rfx3_Rfx1_Rfx4	ENSMUST00000168266.1|Ssrp1|ENSMUSG00000027067.10|structure specific recognition protein 1 	ENSMUST00000130729.1|Ssrp1|ENSMUSG00000027067.10|structure specific recognition protein 1
mm10_v2_chr18_-_70530313_70530434	0.193319	Rfx3_Rfx1_Rfx4	ENSMUST00000043286.8|Poli|ENSMUSG00000038425.11|polymerase (DNA directed), iota
mm10_v2_chr7_-_25250720_25250761	0.192095	Rfx3_Rfx1_Rfx4	ENSMUST00000116343.2|Erf|ENSMUSG00000040857.9|Ets2 repressor factor 	ENSMUST00000045847.8|Erf|ENSMUSG00000040857.9|Ets2 repressor factor
mm10_v2_chr2_-_30178422_30178473	0.191955	Rfx3_Rfx1_Rfx4	ENSMUST00000100220.4|D2Wsu81e|ENSMUSG00000039660.10|DNA segment, Chr 2, Wayne State University 81, expressed 	ENSMUST00000179795.1|D2Wsu81e|ENSMUSG00000039660.10|DNA segment, Chr 2, Wayne State University 81, expressed
mm10_v2_chr11_+_70030023_70030083	0.191788	Rfx3_Rfx1_Rfx4	ENSMUST00000143920.2|Dlg4|ENSMUSG00000020886.10|discs, large homolog 4 (Drosophila)
mm10_v2_chr5_-_23844085_23844161	0.191718	Rfx3_Rfx1_Rfx4	ENSMUST00000030851.6|Tomm7|ENSMUSG00000028998.6|translocase of outer mitochondrial membrane 7 homolog (yeast)
mm10_v2_chr11_-_78245942_78245987	0.182547	Rfx3_Rfx1_Rfx4	ENSMUST00000002121.4|Supt6|ENSMUSG00000002052.6|suppressor of Ty 6
mm10_v2_chr9_+_82829806_82829834	0.180857	Rfx3_Rfx1_Rfx4	ENSMUST00000113245.2|Irak1bp1|ENSMUSG00000032251.6|interleukin-1 receptor-associated kinase 1 binding protein 1 	ENSMUST00000034783.4|Irak1bp1|ENSMUSG00000032251.6|interleukin-1 receptor-associated kinase 1 binding protein 1
mm10_v2_chr5_-_121527186_121527258	0.179887	Rfx3_Rfx1_Rfx4	ENSMUST00000152270.1|Mapkapk5|ENSMUSG00000029454.9|MAP kinase-activated protein kinase 5
mm10_v2_chr4_+_138972885_138972920	0.175253	Rfx3_Rfx1_Rfx4	ENSMUST00000123636.1|Tmco4|ENSMUSG00000041143.10|transmembrane and coiled-coil domains 4 	ENSMUST00000043042.3|Tmco4|ENSMUSG00000041143.10|transmembrane and coiled-coil domains 4 	ENSMUST00000050949.2|Tmco4|ENSMUSG00000041143.10|transmembrane and coiled-coil domains 4
mm10_v2_chr8_+_85299632_85299667	0.173198	Rfx3_Rfx1_Rfx4	ENSMUST00000034132.5|Orc6|ENSMUSG00000031697.5|origin recognition complex, subunit 6 	ENSMUST00000170141.1|Orc6|ENSMUSG00000031697.5|origin recognition complex, subunit 6
mm10_v2_chr7_+_80232862_80232945	0.173096	Rfx3_Rfx1_Rfx4	ENSMUST00000062915.7|Gdpgp1|ENSMUSG00000050973.10|GDP-D-glucose phosphorylase 1
mm10_v2_chr9_+_78051938_78051958	0.172928	Rfx3_Rfx1_Rfx4	ENSMUST00000024104.7|Gcm1|ENSMUSG00000023333.7|glial cells missing homolog 1 (Drosophila)
mm10_v2_chr13_+_59585259_59585441	0.172796	Rfx3_Rfx1_Rfx4	ENSMUST00000168367.1|Naa35|ENSMUSG00000021555.8|N(alpha)-acetyltransferase 35, NatC auxiliary subunit 	ENSMUST00000022038.7|Naa35|ENSMUSG00000021555.8|N(alpha)-acetyltransferase 35, NatC auxiliary subunit 	ENSMUST00000166923.1|Naa35|ENSMUSG00000021555.8|N(alpha)-acetyltransferase 35, NatC auxiliary subunit
mm10_v2_chr3_-_126998408_126998463	0.172037	Rfx3_Rfx1_Rfx4	ENSMUST00000182764.1|Ank2|ENSMUSG00000032826.10|ankyrin 2, brain 	ENSMUST00000044443.8|Ank2|ENSMUSG00000032826.10|ankyrin 2, brain
mm10_v2_chr5_-_136170634_136170661	0.171216	Rfx3_Rfx1_Rfx4	ENSMUST00000041048.1|Orai2|ENSMUSG00000039747.7|ORAI calcium release-activated calcium modulator 2
mm10_v2_chr9_+_108049254_108049339	0.171182	Rfx3_Rfx1_Rfx4	ENSMUST00000112295.2|Gmppb|ENSMUSG00000070284.4|GDP-mannose pyrophosphorylase B 	ENSMUST00000047947.7|Gmppb|ENSMUSG00000070284.4|GDP-mannose pyrophosphorylase B
mm10_v2_chr19_+_8840519_8840549	0.169619	Rfx3_Rfx1_Rfx4	ENSMUST00000086058.6|Bscl2|ENSMUSG00000071657.6|Bernardinelli-Seip congenital lipodystrophy 2 homolog (human)
mm10_v2_chrX_+_151198078_151198140	0.169563	Rfx3_Rfx1_Rfx4	ENSMUST00000184730.1|Wnk3|ENSMUSG00000041245.7|WNK lysine deficient protein kinase 3 	ENSMUST00000184392.1|Wnk3|ENSMUSG00000041245.7|WNK lysine deficient protein kinase 3 	ENSMUST00000096285.4|Wnk3|ENSMUSG00000041245.7|WNK lysine deficient protein kinase 3
mm10_v2_chr5_-_92675253_92675287	0.16754	Rfx3_Rfx1_Rfx4	ENSMUST00000151180.1|Ccdc158|ENSMUSG00000050050.10|coiled-coil domain containing 158 	ENSMUST00000150359.1|Ccdc158|ENSMUSG00000050050.10|coiled-coil domain containing 158
mm10_v2_chr11_-_120991305_120991339	0.167375	Rfx3_Rfx1_Rfx4	ENSMUST00000018274.3|Csnk1d|ENSMUSG00000025162.11|casein kinase 1, delta
mm10_v2_chr4_-_62408618_62408643	0.16697	Rfx3_Rfx1_Rfx4	ENSMUST00000107459.1|Cdc26|ENSMUSG00000066149.5|cell division cycle 26 	ENSMUST00000084525.5|Cdc26|ENSMUSG00000066149.5|cell division cycle 26
mm10_v2_chr9_+_109095427_109095453	0.160525	Rfx3_Rfx1_Rfx4	ENSMUST00000072093.6|Plxnb1|ENSMUSG00000053646.7|plexin B1
mm10_v2_chrX_+_166170449_166170512	0.159501	Rfx3_Rfx1_Rfx4	ENSMUST00000130880.2|Gemin8|ENSMUSG00000040621.8|gem (nuclear organelle) associated protein 8 	ENSMUST00000056410.4|Gemin8|ENSMUSG00000040621.8|gem (nuclear organelle) associated protein 8 	ENSMUST00000096252.3|Gemin8|ENSMUSG00000040621.8|gem (nuclear organelle) associated protein 8 	ENSMUST00000087169.4|Gemin8|ENSMUSG00000040621.8|gem (nuclear organelle) associated protein 8
mm10_v2_chr2_+_129129700_129129791	0.158144	Rfx3_Rfx1_Rfx4	ENSMUST00000035481.4|Chchd5|ENSMUSG00000037938.4|coiled-coil-helix-coiled-coil-helix domain containing 5
mm10_v2_chr16_-_93603803_93603815	0.157686	Rfx3_Rfx1_Rfx4	ENSMUST00000023669.5|Setd4|ENSMUSG00000022948.8|SET domain containing 4 	ENSMUST00000113951.2|Setd4|ENSMUSG00000022948.8|SET domain containing 4
mm10_v2_chr10_+_87859255_87859266	0.157077	Rfx3_Rfx1_Rfx4	ENSMUST00000105300.2|Igf1|ENSMUSG00000020053.12|insulin-like growth factor 1
mm10_v2_chr5_-_92042630_92042701	0.156697	Rfx3_Rfx1_Rfx4	ENSMUST00000113140.1|Cdkl2|ENSMUSG00000029403.8|cyclin-dependent kinase-like 2 (CDC2-related kinase) 	ENSMUST00000113143.1|Cdkl2|ENSMUSG00000029403.8|cyclin-dependent kinase-like 2 (CDC2-related kinase)
mm10_v2_chr10_-_116950366_116950432	0.15367	Rfx3_Rfx1_Rfx4	ENSMUST00000020375.6|Rab3ip|ENSMUSG00000064181.5|RAB3A interacting protein
mm10_v2_chr11_+_20647149_20647156	0.150352	Rfx3_Rfx1_Rfx4	ENSMUST00000109585.1|Sertad2|ENSMUSG00000049800.7|SERTA domain containing 2
mm10_v2_chr12_-_56613270_56613291	0.147613	Rfx3_Rfx1_Rfx4	ENSMUST00000072631.5|Nkx2-9|ENSMUSG00000058669.7|NK2 homeobox 9
mm10_v2_chr2_-_131174653_131174653	0.146854	Rfx3_Rfx1_Rfx4	ENSMUST00000127987.1|Spef1|ENSMUSG00000027329.3|sperm flagellar 1
mm10_v2_chr7_-_30232186_30232272	0.144799	Rfx3_Rfx1_Rfx4	ENSMUST00000006254.5|Tbcb|ENSMUSG00000006095.6|tubulin folding cofactor B
mm10_v2_chr2_-_91444622_91444726	0.141077	Rfx3_Rfx1_Rfx4	ENSMUST00000064652.7|1110051M20Rik|ENSMUSG00000040591.12|RIKEN cDNA 1110051M20 gene 	ENSMUST00000102594.4|1110051M20Rik|ENSMUSG00000040591.12|RIKEN cDNA 1110051M20 gene 	ENSMUST00000094835.2|1110051M20Rik|ENSMUSG00000040591.12|RIKEN cDNA 1110051M20 gene
mm10_v2_chr8_+_33732237_33732339	0.136652	Rfx3_Rfx1_Rfx4	ENSMUST00000171010.1|Gtf2e2|ENSMUSG00000031585.7|general transcription factor II E, polypeptide 2 (beta subunit)
mm10_v2_chr2_+_21205719_21205787	0.136031	Rfx3_Rfx1_Rfx4	ENSMUST00000054591.3|Thnsl1|ENSMUSG00000048550.11|threonine synthase-like 1 (bacterial) 	ENSMUST00000102952.1|Thnsl1|ENSMUSG00000048550.11|threonine synthase-like 1 (bacterial) 	ENSMUST00000138965.1|Thnsl1|ENSMUSG00000048550.11|threonine synthase-like 1 (bacterial) 	ENSMUST00000138914.1|Thnsl1|ENSMUSG00000048550.11|threonine synthase-like 1 (bacterial) 	ENSMUST00000102951.1|Thnsl1|ENSMUSG00000048550.11|threonine synthase-like 1 (bacterial)
mm10_v2_chr9_-_50617428_50617467	0.133704	Rfx3_Rfx1_Rfx4	ENSMUST00000131351.1|AU019823|ENSMUSG00000059820.8|expressed sequence AU019823 	ENSMUST00000171462.1|AU019823|ENSMUSG00000059820.8|expressed sequence AU019823
mm10_v2_chr7_+_30232310_30232350	0.13241	Rfx3_Rfx1_Rfx4	ENSMUST00000108193.1|Polr2i|ENSMUSG00000019738.9|polymerase (RNA) II (DNA directed) polypeptide I 	ENSMUST00000108192.1|Polr2i|ENSMUSG00000019738.9|polymerase (RNA) II (DNA directed) polypeptide I
mm10_v2_chr15_-_98762992_98763190	0.128862	Rfx3_Rfx1_Rfx4	ENSMUST00000156572.1|Arf3|ENSMUSG00000051853.8|ADP-ribosylation factor 3
mm10_v2_chr3_-_127225917_127225959	0.128202	Rfx3_Rfx1_Rfx4	ENSMUST00000182064.1|Ank2|ENSMUSG00000032826.10|ankyrin 2, brain 	ENSMUST00000182662.1|Ank2|ENSMUSG00000032826.10|ankyrin 2, brain
mm10_v2_chr15_-_71727815_71727848	0.123951	Rfx3_Rfx1_Rfx4	ENSMUST00000022953.8|Fam135b|ENSMUSG00000036800.7|family with sequence similarity 135, member B
mm10_v2_chr11_+_58171648_58171688	0.122641	Rfx3_Rfx1_Rfx4	ENSMUST00000020820.1|Mrpl22|ENSMUSG00000020514.2|mitochondrial ribosomal protein L22
mm10_v2_chr15_+_75704280_75704394	0.11829	Rfx3_Rfx1_Rfx4	ENSMUST00000121137.1|Rhpn1|ENSMUSG00000022580.6|rhophilin, Rho GTPase binding protein 1 	ENSMUST00000023244.5|Rhpn1|ENSMUSG00000022580.6|rhophilin, Rho GTPase binding protein 1
mm10_v2_chr9_+_108479849_108479916	0.116246	Rfx3_Rfx1_Rfx4	ENSMUST00000065014.4|Lamb2|ENSMUSG00000052911.4|laminin, beta 2
mm10_v2_chr6_-_33060172_33060252	0.114728	Rfx3_Rfx1_Rfx4	ENSMUST00000115091.1|Chchd3|ENSMUSG00000053768.7|coiled-coil-helix-coiled-coil-helix domain containing 3 	ENSMUST00000127666.1|Chchd3|ENSMUSG00000053768.7|coiled-coil-helix-coiled-coil-helix domain containing 3
mm10_v2_chr7_-_125491586_125491596	0.114106	Rfx3_Rfx1_Rfx4	ENSMUST00000033006.7|Nsmce1|ENSMUSG00000030750.7|non-SMC element 1 homolog (S. cerevisiae)
mm10_v2_chr15_+_59315030_59315087	0.111979	Rfx3_Rfx1_Rfx4	ENSMUST00000022977.7|Sqle|ENSMUSG00000022351.8|squalene epoxidase
mm10_v2_chr6_-_83156393_83156400	0.106163	Rfx3_Rfx1_Rfx4	ENSMUST00000153148.1|Wdr54|ENSMUSG00000030032.6|WD repeat domain 54 	ENSMUST00000125894.1|Wdr54|ENSMUSG00000030032.6|WD repeat domain 54
mm10_v2_chr11_+_120467635_120467719	0.102267	Rfx3_Rfx1_Rfx4	ENSMUST00000140862.1|Hgs|ENSMUSG00000025793.9|HGF-regulated tyrosine kinase substrate 	ENSMUST00000106205.1|Hgs|ENSMUSG00000025793.9|HGF-regulated tyrosine kinase substrate 	ENSMUST00000106203.1|Hgs|ENSMUSG00000025793.9|HGF-regulated tyrosine kinase substrate 	ENSMUST00000026900.7|Hgs|ENSMUSG00000025793.9|HGF-regulated tyrosine kinase substrate
mm10_v2_chr13_+_24802020_24802020	0.0945457	Rfx3_Rfx1_Rfx4	ENSMUST00000155575.1|BC005537|ENSMUSG00000019132.4|cDNA sequence BC005537
mm10_v2_chr9_+_50617516_50617561	0.0937043	Rfx3_Rfx1_Rfx4	ENSMUST00000141366.1|Pih1d2|ENSMUSG00000000167.8|PIH1 domain containing 2
mm10_v2_chr11_-_90638062_90638100	0.0921913	Rfx3_Rfx1_Rfx4	ENSMUST00000020858.7|Stxbp4|ENSMUSG00000020546.8|syntaxin binding protein 4 	ENSMUST00000107875.1|Stxbp4|ENSMUSG00000020546.8|syntaxin binding protein 4 	ENSMUST00000107872.1|Stxbp4|ENSMUSG00000020546.8|syntaxin binding protein 4 	ENSMUST00000143203.1|Stxbp4|ENSMUSG00000020546.8|syntaxin binding protein 4
mm10_v2_chr2_+_36136384_36136428	0.0893353	Rfx3_Rfx1_Rfx4	ENSMUST00000028250.2|Mrrf|ENSMUSG00000026887.3|mitochondrial ribosome recycling factor
mm10_v2_chr7_-_109439076_109439083	0.0889892	Rfx3_Rfx1_Rfx4	ENSMUST00000106745.2|Stk33|ENSMUSG00000031027.9|serine/threonine kinase 33 	ENSMUST00000090414.4|Stk33|ENSMUSG00000031027.9|serine/threonine kinase 33
mm10_v2_chr7_-_45830776_45830944	0.0888184	Rfx3_Rfx1_Rfx4	ENSMUST00000107723.2|Grwd1|ENSMUSG00000053801.10|glutamate-rich WD repeat containing 1 	ENSMUST00000131384.1|Grwd1|ENSMUSG00000053801.10|glutamate-rich WD repeat containing 1
mm10_v2_chr3_+_122245557_122245578	0.0862827	Rfx3_Rfx1_Rfx4	ENSMUST00000029769.7|Gclm|ENSMUSG00000028124.9|glutamate-cysteine ligase, modifier subunit
mm10_v2_chr6_+_65042575_65042667	0.0849138	Rfx3_Rfx1_Rfx4	ENSMUST00000031984.6|Smarcad1|ENSMUSG00000029920.7|SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1
mm10_v2_chrX_+_56787701_56787725	0.07913	Rfx3_Rfx1_Rfx4	ENSMUST00000151033.1|Fhl1|ENSMUSG00000023092.10|four and a half LIM domains 1
mm10_v2_chrX_-_133898399_133898429	0.0777424	Rfx3_Rfx1_Rfx4	ENSMUST00000087557.5|Tspan6|ENSMUSG00000067377.6|tetraspanin 6
mm10_v2_chr2_+_27009936_27010082	0.0765336	Rfx3_Rfx1_Rfx4	ENSMUST00000133807.1|Cacfd1|ENSMUSG00000015488.8|calcium channel flower domain containing 1
mm10_v2_chr1_+_118389058_118389058	0.0690535	Rfx3_Rfx1_Rfx4	ENSMUST00000049404.6|Clasp1|ENSMUSG00000064302.7|CLIP associating protein 1 	ENSMUST00000070989.7|Clasp1|ENSMUSG00000064302.7|CLIP associating protein 1 	ENSMUST00000165223.1|Clasp1|ENSMUSG00000064302.7|CLIP associating protein 1 	ENSMUST00000178710.1|Clasp1|ENSMUSG00000064302.7|CLIP associating protein 1
mm10_v2_chr19_-_4283033_4283142	0.0664742	Rfx3_Rfx1_Rfx4	ENSMUST00000167215.1|Ankrd13d|ENSMUSG00000005986.9|ankyrin repeat domain 13 family, member D 	ENSMUST00000056888.6|Ankrd13d|ENSMUSG00000005986.9|ankyrin repeat domain 13 family, member D
mm10_v2_chr19_+_6942501_6942584	0.0617762	Rfx3_Rfx1_Rfx4	ENSMUST00000113423.3|Bad|ENSMUSG00000024959.7|BCL2-associated agonist of cell death
mm10_v2_chr11_+_78536355_78536368	0.0614377	Rfx3_Rfx1_Rfx4	ENSMUST00000128788.1|Ift20|ENSMUSG00000001105.9|intraflagellar transport 20
mm10_v2_chr7_-_44929410_44929521	0.0607233	Rfx3_Rfx1_Rfx4	ENSMUST00000107857.3|Ap2a1|ENSMUSG00000060279.7|adaptor-related protein complex 2, alpha 1 subunit 	ENSMUST00000085399.6|Ap2a1|ENSMUSG00000060279.7|adaptor-related protein complex 2, alpha 1 subunit 	ENSMUST00000167930.1|Ap2a1|ENSMUSG00000060279.7|adaptor-related protein complex 2, alpha 1 subunit 	ENSMUST00000166972.1|Ap2a1|ENSMUSG00000060279.7|adaptor-related protein complex 2, alpha 1 subunit
mm10_v2_chr4_-_56802265_56802331	0.0600459	Rfx3_Rfx1_Rfx4	ENSMUST00000030140.2|Ikbkap|ENSMUSG00000028431.5|inhibitor of kappa light polypeptide enhancer in B cells, kinase complex-associated protein
mm10_v2_chr8_-_107403197_107403213	0.0590949	Rfx3_Rfx1_Rfx4	ENSMUST00000003947.8|Nqo1|ENSMUSG00000003849.8|NAD(P)H dehydrogenase, quinone 1
mm10_v2_chr8_-_71381907_71381977	0.0585536	Rfx3_Rfx1_Rfx4	ENSMUST00000002466.8|Nr2f6|ENSMUSG00000002393.8|nuclear receptor subfamily 2, group F, member 6
mm10_v2_chr9_-_64341145_64341257	0.0533819	Rfx3_Rfx1_Rfx4	ENSMUST00000120760.1|Dis3l|ENSMUSG00000032396.11|DIS3 mitotic control homolog (S. cerevisiae)-like 	ENSMUST00000168844.2|Dis3l|ENSMUSG00000032396.11|DIS3 mitotic control homolog (S. cerevisiae)-like
mm10_v2_chr6_-_29609811_29609887	0.0506	Rfx3_Rfx1_Rfx4	ENSMUST00000012679.8|Tnpo3|ENSMUSG00000012535.8|transportin 3
mm10_v2_chr10_-_62578387_62578457	0.0499952	Rfx3_Rfx1_Rfx4	ENSMUST00000162525.1|2510003E04Rik|ENSMUSG00000036955.9|RIKEN cDNA 2510003E04 gene 	ENSMUST00000159704.1|2510003E04Rik|ENSMUSG00000036955.9|RIKEN cDNA 2510003E04 gene 	ENSMUST00000162759.1|2510003E04Rik|ENSMUSG00000036955.9|RIKEN cDNA 2510003E04 gene 	ENSMUST00000065887.7|2510003E04Rik|ENSMUSG00000036955.9|RIKEN cDNA 2510003E04 gene
mm10_v2_chr7_+_25681158_25681158	0.0483382	Rfx3_Rfx1_Rfx4	ENSMUST00000108403.3|B9d2|ENSMUSG00000063439.6|B9 protein domain 2
mm10_v2_chr1_+_92906959_92907036	0.0472194	Rfx3_Rfx1_Rfx4	ENSMUST00000060913.6|Dusp28|ENSMUSG00000047067.6|dual specificity phosphatase 28
mm10_v2_chr18_-_70530138_70530284	0.0417909	Rfx3_Rfx1_Rfx4	ENSMUST00000161542.1|Poli|ENSMUSG00000038425.11|polymerase (DNA directed), iota 	ENSMUST00000159389.1|Poli|ENSMUSG00000038425.11|polymerase (DNA directed), iota
mm10_v2_chr7_+_30232032_30232050	0.0412261	Rfx3_Rfx1_Rfx4	ENSMUST00000149654.1|Polr2i|ENSMUSG00000019738.9|polymerase (RNA) II (DNA directed) polypeptide I
mm10_v2_chr11_+_87853207_87853249	0.041176	Rfx3_Rfx1_Rfx4	ENSMUST00000038196.6|Mks1|ENSMUSG00000034121.6|Meckel syndrome, type 1
mm10_v2_chr6_-_29609607_29609642	0.040866	Rfx3_Rfx1_Rfx4	ENSMUST00000115251.1|Tnpo3|ENSMUSG00000012535.8|transportin 3
mm10_v2_chr7_-_126583177_126583255	0.035391	Rfx3_Rfx1_Rfx4	ENSMUST00000098036.2|Cln3|ENSMUSG00000030720.10|ceroid lipofuscinosis, neuronal 3, juvenile (Batten, Spielmeyer-Vogt disease) 	ENSMUST00000032962.4|Cln3|ENSMUSG00000030720.10|ceroid lipofuscinosis, neuronal 3, juvenile (Batten, Spielmeyer-Vogt disease)
mm10_v2_chr5_-_140702241_140702378	0.0295422	Rfx3_Rfx1_Rfx4	ENSMUST00000077890.5|Iqce|ENSMUSG00000036555.8|IQ motif containing E 	ENSMUST00000041783.7|Iqce|ENSMUSG00000036555.8|IQ motif containing E 	ENSMUST00000142081.1|Iqce|ENSMUSG00000036555.8|IQ motif containing E
mm10_v2_chr15_+_30172570_30172600	0.0285319	Rfx3_Rfx1_Rfx4	ENSMUST00000081728.5|Ctnnd2|ENSMUSG00000022240.9|catenin (cadherin associated protein), delta 2
mm10_v2_chr7_-_109438786_109438837	0.0282802	Rfx3_Rfx1_Rfx4	ENSMUST00000121748.1|Stk33|ENSMUSG00000031027.9|serine/threonine kinase 33
mm10_v2_chr9_+_44398176_44398176	0.0282696	Rfx3_Rfx1_Rfx4	ENSMUST00000165839.1|Slc37a4|ENSMUSG00000032114.8|solute carrier family 37 (glucose-6-phosphate transporter), member 4
mm10_v2_chr14_-_77874887_77874941	0.0282122	Rfx3_Rfx1_Rfx4	ENSMUST00000022590.3|Dnajc15|ENSMUSG00000022013.3|DnaJ (Hsp40) homolog, subfamily C, member 15
mm10_v2_chr8_+_45975514_45975558	0.0279894	Rfx3_Rfx1_Rfx4	ENSMUST00000034051.6|Ufsp2|ENSMUSG00000031634.6|UFM1-specific peptidase 2
mm10_v2_chr16_+_94570010_94570052	0.0269253	Rfx3_Rfx1_Rfx4	ENSMUST00000119878.1|Dyrk1a|ENSMUSG00000022897.8|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a
mm10_v2_chr16_+_4741543_4741592	0.0258357	Rfx3_Rfx1_Rfx4	ENSMUST00000120232.1|Hmox2|ENSMUSG00000004070.9|heme oxygenase (decycling) 2
mm10_v2_chr8_+_85060055_85060135	0.0233017	Rfx3_Rfx1_Rfx4	ENSMUST00000095220.3|Fbxw9|ENSMUSG00000008167.8|F-box and WD-40 domain protein 9
mm10_v2_chr10_+_87859062_87859094	0.0228687	Rfx3_Rfx1_Rfx4	ENSMUST00000095360.4|Igf1|ENSMUSG00000020053.12|insulin-like growth factor 1
mm10_v2_chr11_+_78245743_78245821	0.0211493	Rfx3_Rfx1_Rfx4	ENSMUST00000002133.8|Sdf2|ENSMUSG00000002064.10|stromal cell derived factor 2
mm10_v2_chr4_-_41464816_41464892	0.014004	Rfx3_Rfx1_Rfx4	ENSMUST00000108055.2|Kif24|ENSMUSG00000028438.10|kinesin family member 24 	ENSMUST00000154535.1|Kif24|ENSMUSG00000028438.10|kinesin family member 24 	ENSMUST00000030148.5|Kif24|ENSMUSG00000028438.10|kinesin family member 24
mm10_v2_chr7_+_60155538_60155538	0.0136449	Rfx3_Rfx1_Rfx4	ENSMUST00000057611.4|Gm7367|ENSMUSG00000047370.4|predicted pseudogene 7367
mm10_v2_chr10_+_84917616_84917656	0.00868618	Rfx3_Rfx1_Rfx4	ENSMUST00000038523.7|Ric8b|ENSMUSG00000035620.8|resistance to inhibitors of cholinesterase 8 homolog B (C. elegans) 	ENSMUST00000095385.3|Ric8b|ENSMUSG00000035620.8|resistance to inhibitors of cholinesterase 8 homolog B (C. elegans)
mm10_v2_chr7_+_51621830_51621891	0.00656995	Rfx3_Rfx1_Rfx4	ENSMUST00000032710.5|Slc17a6|ENSMUSG00000030500.5|solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 6
mm10_v2_chrX_+_136993147_136993216	0.00612748	Rfx3_Rfx1_Rfx4	ENSMUST00000113067.1|Zcchc18|ENSMUSG00000031428.5|zinc finger, CCHC domain containing 18 	ENSMUST00000101227.2|Zcchc18|ENSMUSG00000031428.5|zinc finger, CCHC domain containing 18
mm10_v2_chr4_-_129600586_129600599	0.00542148	Rfx3_Rfx1_Rfx4	ENSMUST00000135055.1|Eif3i|ENSMUSG00000028798.10|eukaryotic translation initiation factor 3, subunit I
mm10_v2_chr12_-_11265768_11265816	0.0044346	Rfx3_Rfx1_Rfx4	ENSMUST00000166117.1|Gen1|ENSMUSG00000051235.8|Gen homolog 1, endonuclease (Drosophila)
mm10_v2_chr1_-_10232670_10232670	0.00288336	Rfx3_Rfx1_Rfx4	ENSMUST00000088615.4|Arfgef1|ENSMUSG00000067851.5|ADP-ribosylation factor guanine nucleotide-exchange factor 1(brefeldin A-inhibited) 	ENSMUST00000131556.1|Arfgef1|ENSMUSG00000067851.5|ADP-ribosylation factor guanine nucleotide-exchange factor 1(brefeldin A-inhibited)
mm10_v2_chr10_-_62726086_62726128	0.00100292	Rfx3_Rfx1_Rfx4	ENSMUST00000133371.1|Stox1|ENSMUSG00000036923.6|storkhead box 1
mm10_v2_chr17_+_25828791_25828867	0.000758972	Rfx3_Rfx1_Rfx4	ENSMUST00000133595.1|Jmjd8|ENSMUSG00000025736.8|jumonji domain containing 8
mm10_v2_chr12_+_17544873_17544951	0.000343006	Rfx3_Rfx1_Rfx4	ENSMUST00000171737.1|Odc1|ENSMUSG00000011179.7|ornithine decarboxylase, structural 1
