mm10_v2_chr8_+_57455898_57455923	0.812019	Six6	ENSMUST00000034023.3|Scrg1|ENSMUSG00000031610.3|scrapie responsive gene 1
mm10_v2_chr11_+_78324200_78324236	0.6113	Six6	ENSMUST00000102478.3|Aldoc|ENSMUSG00000017390.9|aldolase C, fructose-bisphosphate
mm10_v2_chr4_-_43653542_43653557	0.599409	Six6	ENSMUST00000084646.4|Spag8|ENSMUSG00000066196.5|sperm associated antigen 8
mm10_v2_chr4_-_43653560_43653594	0.577447	Six6	ENSMUST00000107870.2|Spag8|ENSMUSG00000066196.5|sperm associated antigen 8
mm10_v2_chr5_+_140607334_140607352	0.523091	Six6	ENSMUST00000031555.1|Lfng|ENSMUSG00000029570.1|LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase
mm10_v2_chr19_+_4154606_4154629	0.456359	Six6	ENSMUST00000061086.8|Ptprcap|ENSMUSG00000045826.8|protein tyrosine phosphatase, receptor type, C polypeptide-associated protein
mm10_v2_chr10_+_24595623_24595780	0.439288	Six6	ENSMUST00000176228.1|Ctgf|ENSMUSG00000019997.5|connective tissue growth factor 	ENSMUST00000129142.1|Ctgf|ENSMUSG00000019997.5|connective tissue growth factor
mm10_v2_chr13_-_66852017_66852017	0.431136	Six6	ENSMUST00000059329.6|Gm17449|ENSMUSG00000094740.1|predicted gene, 17449
mm10_v2_chr4_+_156013835_156013849	0.427222	Six6	ENSMUST00000030952.5|Tnfrsf4|ENSMUSG00000029075.6|tumor necrosis factor receptor superfamily, member 4
mm10_v2_chr1_-_165708088_165708099	0.414096	Six6	ENSMUST00000040357.8|Rcsd1|ENSMUSG00000040723.8|RCSD domain containing 1 	ENSMUST00000097474.3|Rcsd1|ENSMUSG00000040723.8|RCSD domain containing 1
mm10_v2_chr1_+_45311538_45311638	0.413884	Six6	ENSMUST00000087883.6|Col3a1|ENSMUSG00000026043.12|collagen, type III, alpha 1
mm10_v2_chrX_+_103414461_103414481	0.352708	Six6	ENSMUST00000033691.4|Tsx|ENSMUSG00000031329.4|testis specific X-linked gene
mm10_v2_chr4_+_36952930_36952970	0.33542	Six6	ENSMUST00000144029.1|Gm12371|ENSMUSG00000084898.1|predicted gene 12371
mm10_v2_chr9_+_98422961_98422961	0.30051	Six6	ENSMUST00000052068.9|Rbp1|ENSMUSG00000046402.9|retinol binding protein 1, cellular
mm10_v2_chr11_+_98412461_98412566	0.264171	Six6	ENSMUST00000058295.5|Erbb2|ENSMUSG00000062312.5|v-erb-b2 erythroblastic leukemia viral oncogene homolog 2, neuro/glioblastoma derived oncogene homolog (avian)
mm10_v2_chr19_-_23075853_23075904	0.233592	Six6	ENSMUST00000181623.1|C330002G04Rik|ENSMUSG00000097930.1|RIKEN cDNA C330002G04 gene
mm10_v2_chr2_+_127336152_127336166	0.22873	Six6	ENSMUST00000028846.6|Dusp2|ENSMUSG00000027368.6|dual specificity phosphatase 2
mm10_v2_chr17_+_40811089_40811133	0.223011	Six6	ENSMUST00000024721.7|Rhag|ENSMUSG00000023926.7|Rhesus blood group-associated A glycoprotein
mm10_v2_chr13_-_66851513_66851513	0.221234	Six6	ENSMUST00000169322.1|Gm17404|ENSMUSG00000095206.1|predicted gene, 17404
mm10_v2_chr8_+_69832633_69832712	0.220756	Six6	ENSMUST00000131637.2|Pbx4|ENSMUSG00000031860.11|pre B cell leukemia homeobox 4 	ENSMUST00000081503.6|Pbx4|ENSMUSG00000031860.11|pre B cell leukemia homeobox 4
mm10_v2_chr7_-_126676357_126676383	0.214508	Six6	ENSMUST00000106371.1|Sult1a1|ENSMUSG00000030711.9|sulfotransferase family 1A, phenol-preferring, member 1 	ENSMUST00000106372.3|Sult1a1|ENSMUSG00000030711.9|sulfotransferase family 1A, phenol-preferring, member 1 	ENSMUST00000155419.1|Sult1a1|ENSMUSG00000030711.9|sulfotransferase family 1A, phenol-preferring, member 1
mm10_v2_chr4_-_24851079_24851124	0.190808	Six6	ENSMUST00000084781.5|Klhl32|ENSMUSG00000040387.10|kelch-like 32 	ENSMUST00000108218.3|Klhl32|ENSMUSG00000040387.10|kelch-like 32
mm10_v2_chr15_-_67113909_67113992	0.18766	Six6	ENSMUST00000092640.5|St3gal1|ENSMUSG00000013846.9|ST3 beta-galactoside alpha-2,3-sialyltransferase 1
mm10_v2_chr1_+_74713551_74713574	0.179168	Six6	ENSMUST00000027356.5|Cyp27a1|ENSMUSG00000026170.5|cytochrome P450, family 27, subfamily a, polypeptide 1
mm10_v2_chr5_+_144244432_144244457	0.171683	Six6	ENSMUST00000110695.1|Bri3|ENSMUSG00000047843.10|brain protein I3
mm10_v2_chrX_+_169685191_169685250	0.165673	Six6	ENSMUST00000112104.1|Mid1|ENSMUSG00000035299.10|midline 1 	ENSMUST00000112107.1|Mid1|ENSMUSG00000035299.10|midline 1
mm10_v2_chr4_+_11758147_11758220	0.158852	Six6	ENSMUST00000029871.5|Cdh17|ENSMUSG00000028217.5|cadherin 17 	ENSMUST00000108303.1|Cdh17|ENSMUSG00000028217.5|cadherin 17
mm10_v2_chr19_-_11336107_11336144	0.158149	Six6	ENSMUST00000056035.2|Ms4a7|ENSMUSG00000024672.5|membrane-spanning 4-domains, subfamily A, member 7 	ENSMUST00000067532.4|Ms4a7|ENSMUSG00000024672.5|membrane-spanning 4-domains, subfamily A, member 7
mm10_v2_chr7_-_42578588_42578588	0.153421	Six6	ENSMUST00000179470.1|Gm21028|ENSMUSG00000094462.1|predicted gene, 21028
mm10_v2_chr9_-_121839460_121839465	0.143776	Six6	ENSMUST00000135986.2|Ccdc13|ENSMUSG00000079235.4|coiled-coil domain containing 13
mm10_v2_chr17_-_53539411_53539459	0.140518	Six6	ENSMUST00000056198.3|Pp2d1|ENSMUSG00000044957.3|protein phosphatase 2C-like domain containing 1
mm10_v2_chr7_+_30231884_30231948	0.138997	Six6	ENSMUST00000019882.9|Polr2i|ENSMUSG00000019738.9|polymerase (RNA) II (DNA directed) polypeptide I
mm10_v2_chr4_-_97584612_97584643	0.13742	Six6	ENSMUST00000107068.2|E130114P18Rik|ENSMUSG00000048747.8|RIKEN cDNA E130114P18 gene
mm10_v2_chr7_-_126676428_126676439	0.136483	Six6	ENSMUST00000106373.1|Sult1a1|ENSMUSG00000030711.9|sulfotransferase family 1A, phenol-preferring, member 1
mm10_v2_chr13_-_90089060_90089092	0.133651	Six6	ENSMUST00000161396.1|Xrcc4|ENSMUSG00000021615.7|X-ray repair complementing defective repair in Chinese hamster cells 4
mm10_v2_chr18_-_88927447_88927481	0.133635	Six6	ENSMUST00000147313.1|Socs6|ENSMUSG00000056153.8|suppressor of cytokine signaling 6
mm10_v2_chr19_+_25672408_25672420	0.133451	Six6	ENSMUST00000053068.5|Dmrt2|ENSMUSG00000048138.9|doublesex and mab-3 related transcription factor 2
mm10_v2_chr17_+_35241838_35241870	0.130411	Six6	ENSMUST00000173731.1|Ddx39b|ENSMUSG00000019432.9|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B
mm10_v2_chr15_-_75894474_75894529	0.130067	Six6	ENSMUST00000023237.6|Naprt1|ENSMUSG00000022574.6|nicotinate phosphoribosyltransferase domain containing 1
mm10_v2_chr8_+_85026833_85026899	0.129531	Six6	ENSMUST00000047281.8|2310036O22Rik|ENSMUSG00000041203.8|RIKEN cDNA 2310036O22 gene
mm10_v2_chr1_+_171419027_171419052	0.127285	Six6	ENSMUST00000171362.1|Tstd1|ENSMUSG00000091166.1|thiosulfate sulfurtransferase (rhodanese)-like domain containing 1
mm10_v2_chr19_-_5729618_5729700	0.125346	Six6	ENSMUST00000116558.2|Fam89b|ENSMUSG00000024939.6|family with sequence similarity 89, member B 	ENSMUST00000099955.3|Fam89b|ENSMUSG00000024939.6|family with sequence similarity 89, member B 	ENSMUST00000161368.1|Fam89b|ENSMUSG00000024939.6|family with sequence similarity 89, member B
mm10_v2_chr4_-_97584605_97584610	0.123455	Six6	ENSMUST00000107067.1|E130114P18Rik|ENSMUSG00000048747.8|RIKEN cDNA E130114P18 gene
mm10_v2_chr12_+_105705970_105705987	0.121229	Six6	ENSMUST00000040876.5|Ak7|ENSMUSG00000041323.5|adenylate kinase 7
mm10_v2_chr8_+_105373265_105373277	0.120387	Six6	ENSMUST00000160650.1|Plekhg4|ENSMUSG00000014782.9|pleckstrin homology domain containing, family G (with RhoGef domain) member 4
mm10_v2_chr11_+_60353324_60353408	0.118839	Six6	ENSMUST00000070805.6|Lrrc48|ENSMUSG00000056598.10|leucine rich repeat containing 48 	ENSMUST00000094140.2|Lrrc48|ENSMUSG00000056598.10|leucine rich repeat containing 48 	ENSMUST00000108723.2|Lrrc48|ENSMUSG00000056598.10|leucine rich repeat containing 48 	ENSMUST00000108722.4|Lrrc48|ENSMUSG00000056598.10|leucine rich repeat containing 48
mm10_v2_chr13_+_65512678_65512678	0.11839	Six6	ENSMUST00000081471.2|Gm10139|ENSMUSG00000063905.2|predicted gene 10139
mm10_v2_chr2_-_119029359_119029389	0.118113	Six6	ENSMUST00000110833.1|Ccdc32|ENSMUSG00000039983.7|coiled-coil domain containing 32
mm10_v2_chr7_+_30232310_30232350	0.113251	Six6	ENSMUST00000108193.1|Polr2i|ENSMUSG00000019738.9|polymerase (RNA) II (DNA directed) polypeptide I 	ENSMUST00000108192.1|Polr2i|ENSMUSG00000019738.9|polymerase (RNA) II (DNA directed) polypeptide I
mm10_v2_chr14_+_67234620_67234645	0.111443	Six6	ENSMUST00000176029.1|Ebf2|ENSMUSG00000022053.7|early B cell factor 2
mm10_v2_chr6_+_48537560_48537622	0.108132	Six6	ENSMUST00000040361.5|Atp6v0e2|ENSMUSG00000039347.5|ATPase, H+ transporting, lysosomal V0 subunit E2
mm10_v2_chr17_+_43568096_43568137	0.107204	Six6	ENSMUST00000167214.1|Pla2g7|ENSMUSG00000023913.11|phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)
mm10_v2_chr5_+_117319258_117319284	0.107081	Six6	ENSMUST00000111967.1|Vsig10|ENSMUSG00000066894.8|V-set and immunoglobulin domain containing 10
mm10_v2_chr17_+_35241746_35241778	0.106249	Six6	ENSMUST00000068056.5|Ddx39b|ENSMUSG00000019432.9|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B 	ENSMUST00000174757.1|Ddx39b|ENSMUSG00000019432.9|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B
mm10_v2_chrX_-_74373260_74373349	0.105862	Six6	ENSMUST00000073067.4|Slc10a3|ENSMUSG00000032806.7|solute carrier family 10 (sodium/bile acid cotransporter family), member 3 	ENSMUST00000037967.5|Slc10a3|ENSMUSG00000032806.7|solute carrier family 10 (sodium/bile acid cotransporter family), member 3
mm10_v2_chr19_-_4625612_4625658	0.105802	Six6	ENSMUST00000025823.3|Rce1|ENSMUSG00000024889.3|RCE1 homolog, prenyl protein peptidase (S. cerevisiae)
mm10_v2_chr5_-_100373484_100373527	0.103824	Six6	ENSMUST00000182433.1|Sec31a|ENSMUSG00000035325.10|Sec31 homolog A (S. cerevisiae)
mm10_v2_chr7_+_44590886_44590905	0.101933	Six6	ENSMUST00000107906.3|Kcnc3|ENSMUSG00000062785.7|potassium voltage gated channel, Shaw-related subfamily, member 3
mm10_v2_chr13_+_43785107_43785160	0.101192	Six6	ENSMUST00000015540.2|Cd83|ENSMUSG00000015396.3|CD83 antigen
mm10_v2_chr10_-_86732409_86732429	0.0991704	Six6	ENSMUST00000070435.4|Fabp3-ps1|ENSMUSG00000056366.4|fatty acid binding protein 3, muscle and heart, pseudogene 1
mm10_v2_chr11_+_100319880_100319905	0.0972668	Six6	ENSMUST00000049385.7|Eif1|ENSMUSG00000035530.7|eukaryotic translation initiation factor 1
mm10_v2_chr18_+_74216118_74216145	0.0955367	Six6	ENSMUST00000025444.6|Cxxc1|ENSMUSG00000024560.6|CXXC finger 1 (PHD domain)
mm10_v2_chr16_+_84774123_84774174	0.0942452	Six6	ENSMUST00000114195.1|Jam2|ENSMUSG00000053062.9|junction adhesion molecule 2
mm10_v2_chr9_+_104002546_104002776	0.091289	Six6	ENSMUST00000035167.8|Nphp3|ENSMUSG00000032558.12|nephronophthisis 3 (adolescent) 	ENSMUST00000117054.1|Nphp3|ENSMUSG00000032558.12|nephronophthisis 3 (adolescent)
mm10_v2_chr17_-_62606679_62606707	0.0904802	Six6	ENSMUST00000163332.1|Efna5|ENSMUSG00000090425.1|ephrin A5
mm10_v2_chr3_+_88207308_88207328	0.0847638	Six6	ENSMUST00000180582.1|Gm3764|ENSMUSG00000097156.1|predicted gene 3764
mm10_v2_chr15_-_82244716_82244755	0.0847619	Six6	ENSMUST00000089155.4|Cenpm|ENSMUSG00000068101.4|centromere protein M 	ENSMUST00000089157.3|Cenpm|ENSMUSG00000068101.4|centromere protein M
mm10_v2_chrM_+_2743_2761	0.0818886	Six6	ENSMUST00000082392.1|mt-Nd1|ENSMUSG00000064341.1|mitochondrially encoded NADH dehydrogenase 1
mm10_v2_chr9_+_72958785_72958850	0.0811516	Six6	ENSMUST00000098567.2|Dyx1c1|ENSMUSG00000092192.1|dyslexia susceptibility 1 candidate 1 homolog (human) 	ENSMUST00000034734.8|Dyx1c1|ENSMUSG00000092192.1|dyslexia susceptibility 1 candidate 1 homolog (human)
mm10_v2_chrX_-_142966709_142966734	0.0807957	Six6	ENSMUST00000041317.2|Ammecr1|ENSMUSG00000042225.3|Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1
mm10_v2_chr14_+_70555900_70555900	0.0805472	Six6	ENSMUST00000163060.1|Hr|ENSMUSG00000022096.8|hairless
mm10_v2_chr10_-_81627797_81627797	0.0800279	Six6	ENSMUST00000042923.8|Sirt6|ENSMUSG00000034748.10|sirtuin 6
mm10_v2_chr12_+_83987854_83987898	0.0784661	Six6	ENSMUST00000021649.7|Acot2|ENSMUSG00000021226.7|acyl-CoA thioesterase 2
mm10_v2_chr5_-_148371525_148371546	0.0764408	Six6	ENSMUST00000138596.1|Slc7a1|ENSMUSG00000041313.8|solute carrier family 7 (cationic amino acid transporter, y+ system), member 1
mm10_v2_chr6_-_50382831_50382847	0.0756813	Six6	ENSMUST00000114468.2|Osbpl3|ENSMUSG00000029822.9|oxysterol binding protein-like 3
mm10_v2_chr9_+_58582397_58582436	0.0744361	Six6	ENSMUST00000176557.1|Nptn|ENSMUSG00000032336.11|neuroplastin 	ENSMUST00000114121.4|Nptn|ENSMUSG00000032336.11|neuroplastin 	ENSMUST00000177064.1|Nptn|ENSMUSG00000032336.11|neuroplastin
mm10_v2_chr18_+_35553401_35553421	0.074103	Six6	ENSMUST00000181664.1|Snhg4|ENSMUSG00000097769.1|small nucleolar RNA host gene 4 (non-protein coding)
mm10_v2_chr9_-_50528641_50528698	0.0737281	Six6	ENSMUST00000034570.5|Pts|ENSMUSG00000032067.5|6-pyruvoyl-tetrahydropterin synthase
mm10_v2_chr12_+_84773262_84773319	0.0737125	Six6	ENSMUST00000021667.5|Isca2|ENSMUSG00000021241.6|iron-sulfur cluster assembly 2 homolog (S. cerevisiae)
mm10_v2_chr16_-_65562686_65562769	0.0691533	Six6	ENSMUST00000004965.6|Chmp2b|ENSMUSG00000004843.6|charged multivesicular body protein 2B
mm10_v2_chr17_-_27909206_27909264	0.0689687	Six6	ENSMUST00000114848.1|Taf11|ENSMUSG00000024218.6|TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor
mm10_v2_chr15_-_76206309_76206357	0.0685216	Six6	ENSMUST00000073418.6|Plec|ENSMUSG00000022565.9|plectin 	ENSMUST00000171634.1|Plec|ENSMUSG00000022565.9|plectin 	ENSMUST00000076442.5|Plec|ENSMUSG00000022565.9|plectin
mm10_v2_chr7_-_101903783_101903786	0.0684035	Six6	ENSMUST00000106969.1|Tomt|ENSMUSG00000078630.1|transmembrane O-methyltransferase
mm10_v2_chr11_+_115564434_115564490	0.0674636	Six6	ENSMUST00000021085.4|Nup85|ENSMUSG00000020739.5|nucleoporin 85
mm10_v2_chr9_+_58582240_58582292	0.0658112	Six6	ENSMUST00000177292.1|Nptn|ENSMUSG00000032336.11|neuroplastin 	ENSMUST00000085651.5|Nptn|ENSMUSG00000032336.11|neuroplastin
mm10_v2_chr1_-_128359610_128359698	0.0655573	Six6	ENSMUST00000027601.4|Mcm6|ENSMUSG00000026355.5|minichromosome maintenance deficient 6 (MIS5 homolog, S. pombe) (S. cerevisiae)
mm10_v2_chr12_+_8921598_8921671	0.0644366	Six6	ENSMUST00000020909.3|Laptm4a|ENSMUSG00000020585.4|lysosomal-associated protein transmembrane 4A
mm10_v2_chr17_-_56717681_56717709	0.064238	Six6	ENSMUST00000164907.1|Vmac|ENSMUSG00000054723.5|vimentin-type intermediate filament associated coiled-coil protein
mm10_v2_chr5_-_106926245_106926321	0.0634418	Six6	ENSMUST00000117588.1|Hfm1|ENSMUSG00000043410.10|HFM1, ATP-dependent DNA helicase homolog (S. cerevisiae)
mm10_v2_chr13_+_100124850_100124924	0.0617662	Six6	ENSMUST00000022147.8|Smn1|ENSMUSG00000021645.10|survival motor neuron 1 	ENSMUST00000091321.5|Smn1|ENSMUSG00000021645.10|survival motor neuron 1 	ENSMUST00000143937.1|Smn1|ENSMUSG00000021645.10|survival motor neuron 1
mm10_v2_chr8_-_106573461_106573462	0.0613429	Six6	ENSMUST00000073722.5|Gm10073|ENSMUSG00000060019.5|predicted pseudogene 10073
mm10_v2_chr17_+_43568641_43568676	0.0590183	Six6	ENSMUST00000169694.1|Pla2g7|ENSMUSG00000023913.11|phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)
mm10_v2_chr19_-_44135816_44135881	0.0576395	Six6	ENSMUST00000026218.5|Cwf19l1|ENSMUSG00000025200.6|CWF19-like 1, cell cycle control (S. pombe)
mm10_v2_chr16_-_52296924_52296924	0.0570697	Six6	ENSMUST00000167115.1|Alcam|ENSMUSG00000022636.7|activated leukocyte cell adhesion molecule
mm10_v2_chr2_-_13271419_13271437	0.0569536	Six6	ENSMUST00000028059.2|Rsu1|ENSMUSG00000026727.4|Ras suppressor protein 1
mm10_v2_chr18_-_61911783_61911854	0.0556275	Six6	ENSMUST00000049378.8|Ablim3|ENSMUSG00000032735.8|actin binding LIM protein family, member 3 	ENSMUST00000166783.1|Ablim3|ENSMUSG00000032735.8|actin binding LIM protein family, member 3
mm10_v2_chr8_-_121829480_121829571	0.0543892	Six6	ENSMUST00000174717.1|Klhdc4|ENSMUSG00000040263.10|kelch domain containing 4 	ENSMUST00000174192.1|Klhdc4|ENSMUSG00000040263.10|kelch domain containing 4 	ENSMUST00000045884.10|Klhdc4|ENSMUSG00000040263.10|kelch domain containing 4
mm10_v2_chr19_-_53589067_53589067	0.054302	Six6	ENSMUST00000095978.3|Nutf2-ps1|ENSMUSG00000071497.3|nuclear transport factor 2, pseudogene 1
mm10_v2_chr8_+_40423786_40423848	0.0542672	Six6	ENSMUST00000049389.4|Zdhhc2|ENSMUSG00000039470.9|zinc finger, DHHC domain containing 2 	ENSMUST00000128166.1|Zdhhc2|ENSMUSG00000039470.9|zinc finger, DHHC domain containing 2 	ENSMUST00000167766.1|Zdhhc2|ENSMUSG00000039470.9|zinc finger, DHHC domain containing 2
mm10_v2_chr17_+_21690766_21690766	0.0542278	Six6	ENSMUST00000097384.1|Gm10509|ENSMUSG00000073448.1|predicted gene 10509
mm10_v2_chrX_-_73659724_73659877	0.0538199	Six6	ENSMUST00000114473.1|Pnck|ENSMUSG00000002012.7|pregnancy upregulated non-ubiquitously expressed CaM kinase 	ENSMUST00000002087.7|Pnck|ENSMUSG00000002012.7|pregnancy upregulated non-ubiquitously expressed CaM kinase
mm10_v2_chr3_+_130068390_130068412	0.0522518	Six6	ENSMUST00000076703.6|Gm9396|ENSMUSG00000063328.6|predicted gene 9396
mm10_v2_chr1_+_97770158_97770209	0.0520857	Six6	ENSMUST00000112844.3|Gin1|ENSMUSG00000026333.8|gypsy retrotransposon integrase 1 	ENSMUST00000112842.1|Gin1|ENSMUSG00000026333.8|gypsy retrotransposon integrase 1 	ENSMUST00000027571.6|Gin1|ENSMUSG00000026333.8|gypsy retrotransposon integrase 1
mm10_v2_chr4_-_116651644_116651680	0.0516776	Six6	ENSMUST00000030455.8|Akr1a1|ENSMUSG00000028692.8|aldo-keto reductase family 1, member A1 (aldehyde reductase)
mm10_v2_chr4_+_5644084_5644129	0.0510824	Six6	ENSMUST00000054857.6|Fam110b|ENSMUSG00000049119.8|family with sequence similarity 110, member B
mm10_v2_chr17_+_56717759_56717819	0.0505877	Six6	ENSMUST00000002452.6|Ndufa11|ENSMUSG00000002379.6|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 11
mm10_v2_chr19_-_4042165_4042242	0.0498872	Six6	ENSMUST00000042700.9|Gstp2|ENSMUSG00000038155.9|glutathione S-transferase, pi 2
mm10_v2_chr5_+_104046869_104046899	0.0483709	Six6	ENSMUST00000031250.7|Nudt9|ENSMUSG00000029310.7|nudix (nucleoside diphosphate linked moiety X)-type motif 9
mm10_v2_chr7_-_130547358_130547386	0.0479097	Six6	ENSMUST00000160289.1|Nsmce4a|ENSMUSG00000040331.9|non-SMC element 4 homolog A (S. cerevisiae)
mm10_v2_chr11_-_100650693_100650749	0.0472818	Six6	ENSMUST00000103119.3|Zfp385c|ENSMUSG00000014198.9|zinc finger protein 385C
mm10_v2_chr3_+_85574109_85574148	0.0470317	Six6	ENSMUST00000127348.1|Pet112|ENSMUSG00000028085.6|PET112 homolog (S. cerevisiae) 	ENSMUST00000107672.1|Pet112|ENSMUSG00000028085.6|PET112 homolog (S. cerevisiae) 	ENSMUST00000107674.1|Pet112|ENSMUSG00000028085.6|PET112 homolog (S. cerevisiae)
mm10_v2_chr14_+_58893465_58893506	0.0464564	Six6	ENSMUST00000079960.1|Rpl13-ps3|ENSMUSG00000059835.1|ribosomal protein L13, pseudogene 3
mm10_v2_chr7_+_27591513_27591562	0.0460832	Six6	ENSMUST00000108344.2|Akt2|ENSMUSG00000004056.9|thymoma viral proto-oncogene 2
mm10_v2_chr7_+_110627650_110627669	0.045834	Six6	ENSMUST00000033054.8|Adm|ENSMUSG00000030790.8|adrenomedullin
mm10_v2_chr16_-_18876655_18876767	0.0454584	Six6	ENSMUST00000023391.8|Mrpl40|ENSMUSG00000022706.9|mitochondrial ribosomal protein L40
mm10_v2_chr11_-_87826023_87826113	0.0452474	Six6	ENSMUST00000103177.3|Lpo|ENSMUSG00000009356.6|lactoperoxidase
mm10_v2_chr7_-_35647127_35647209	0.0451666	Six6	ENSMUST00000120714.1|Pdcd5|ENSMUSG00000030417.9|programmed cell death 5
mm10_v2_chr2_+_131491764_131491943	0.045045	Six6	ENSMUST00000028806.5|Smox|ENSMUSG00000027333.12|spermine oxidase 	ENSMUST00000110179.2|Smox|ENSMUSG00000027333.12|spermine oxidase 	ENSMUST00000110189.2|Smox|ENSMUSG00000027333.12|spermine oxidase 	ENSMUST00000110182.2|Smox|ENSMUSG00000027333.12|spermine oxidase 	ENSMUST00000110183.2|Smox|ENSMUSG00000027333.12|spermine oxidase 	ENSMUST00000110186.2|Smox|ENSMUSG00000027333.12|spermine oxidase 	ENSMUST00000110188.1|Smox|ENSMUSG00000027333.12|spermine oxidase
mm10_v2_chr7_+_66839726_66839750	0.0439918	Six6	ENSMUST00000098382.3|Adamts17|ENSMUSG00000058145.9|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 17
mm10_v2_chr19_+_46341118_46341122	0.0439133	Six6	ENSMUST00000128041.1|Tmem180|ENSMUSG00000025227.8|transmembrane protein 180
mm10_v2_chr3_-_37724321_37724490	0.0437555	Six6	ENSMUST00000108105.1|Gm5148|ENSMUSG00000058174.7|predicted gene 5148 	ENSMUST00000079755.4|Gm5148|ENSMUSG00000058174.7|predicted gene 5148 	ENSMUST00000099128.1|Gm5148|ENSMUSG00000058174.7|predicted gene 5148
mm10_v2_chr16_+_10835046_10835084	0.0435663	Six6	ENSMUST00000037913.8|Rmi2|ENSMUSG00000037991.9|RMI2, RecQ mediated genome instability 2, homolog (S. cerevisiae)
mm10_v2_chr10_+_128238034_128238069	0.0434597	Six6	ENSMUST00000105245.2|Timeless|ENSMUSG00000039994.9|timeless circadian clock 1
mm10_v2_chr5_+_121204477_121204499	0.0424135	Six6	ENSMUST00000031617.9|Rpl6|ENSMUSG00000029614.9|ribosomal protein L6
mm10_v2_chr17_+_43568269_43568303	0.0400771	Six6	ENSMUST00000024706.5|Pla2g7|ENSMUSG00000023913.11|phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)
mm10_v2_chr5_+_123907175_123907292	0.0392631	Six6	ENSMUST00000023869.8|Denr|ENSMUSG00000023106.9|density-regulated protein
mm10_v2_chr16_-_18235074_18235184	0.0379948	Six6	ENSMUST00000076957.5|Zdhhc8|ENSMUSG00000060166.5|zinc finger, DHHC domain containing 8
mm10_v2_chr17_+_55959146_55959187	0.0375708	Six6	ENSMUST00000086869.4|Ccdc94|ENSMUSG00000003208.8|coiled-coil domain containing 94
mm10_v2_chr7_-_141168671_141168936	0.0374273	Six6	ENSMUST00000106033.3|Rnh1|ENSMUSG00000038650.8|ribonuclease/angiogenin inhibitor 1
mm10_v2_chr5_+_122210134_122210295	0.0368968	Six6	ENSMUST00000100747.2|Hvcn1|ENSMUSG00000064267.7|hydrogen voltage-gated channel 1
mm10_v2_chr9_+_108991902_108991969	0.0349148	Six6	ENSMUST00000147989.1|Pfkfb4|ENSMUSG00000025648.11|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4 	ENSMUST00000051873.8|Pfkfb4|ENSMUSG00000025648.11|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4
mm10_v2_chr5_+_140419248_140419377	0.0345731	Six6	ENSMUST00000100507.3|Eif3b|ENSMUSG00000056076.9|eukaryotic translation initiation factor 3, subunit B
mm10_v2_chrX_-_7947848_7947889	0.0333789	Six6	ENSMUST00000115642.1|Hdac6|ENSMUSG00000031161.9|histone deacetylase 6 	ENSMUST00000033501.8|Hdac6|ENSMUSG00000031161.9|histone deacetylase 6 	ENSMUST00000145675.1|Hdac6|ENSMUSG00000031161.9|histone deacetylase 6
mm10_v2_chr6_-_81965925_81965962	0.0326616	Six6	ENSMUST00000032124.8|Mrpl19|ENSMUSG00000030045.10|mitochondrial ribosomal protein L19
mm10_v2_chr8_+_61487715_61487751	0.032448	Six6	ENSMUST00000034058.6|Cbr4|ENSMUSG00000031641.7|carbonyl reductase 4 	ENSMUST00000126575.1|Cbr4|ENSMUSG00000031641.7|carbonyl reductase 4
mm10_v2_chr16_-_31275277_31275290	0.0320699	Six6	ENSMUST00000060188.7|Ppp1r2|ENSMUSG00000047714.8|protein phosphatase 1, regulatory (inhibitor) subunit 2
mm10_v2_chr11_-_106272927_106273006	0.0317543	Six6	ENSMUST00000021052.9|Smarcd2|ENSMUSG00000078619.4|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2
mm10_v2_chr9_-_103228420_103228442	0.0312751	Six6	ENSMUST00000126359.1|Trf|ENSMUSG00000032554.9|transferrin
mm10_v2_chr17_-_23771543_23771595	0.0308397	Six6	ENSMUST00000086325.5|Flywch1|ENSMUSG00000040097.9|FLYWCH-type zinc finger 1
mm10_v2_chr15_-_79742518_79742562	0.0303205	Six6	ENSMUST00000089311.4|Sun2|ENSMUSG00000042524.7|Sad1 and UNC84 domain containing 2 	ENSMUST00000046259.7|Sun2|ENSMUSG00000042524.7|Sad1 and UNC84 domain containing 2
mm10_v2_chr7_-_104315455_104315463	0.0301885	Six6	ENSMUST00000106837.1|Trim12a|ENSMUSG00000066258.7|tripartite motif-containing 12A 	ENSMUST00000106839.2|Trim12a|ENSMUSG00000066258.7|tripartite motif-containing 12A 	ENSMUST00000070943.6|Trim12a|ENSMUSG00000066258.7|tripartite motif-containing 12A
mm10_v2_chr18_+_14424821_14424868	0.0294828	Six6	ENSMUST00000069552.5|Gm5160|ENSMUSG00000055795.5|predicted gene 5160
mm10_v2_chr8_+_69822429_69822592	0.0280878	Six6	ENSMUST00000164890.1|Lpar2|ENSMUSG00000031861.9|lysophosphatidic acid receptor 2 	ENSMUST00000034325.4|Lpar2|ENSMUSG00000031861.9|lysophosphatidic acid receptor 2
mm10_v2_chr4_+_134864536_134864601	0.0274028	Six6	ENSMUST00000030627.7|Rhd|ENSMUSG00000028825.7|Rh blood group, D antigen
mm10_v2_chr2_-_119029392_119029395	0.0269921	Six6	ENSMUST00000036470.7|Ccdc32|ENSMUSG00000039983.7|coiled-coil domain containing 32 	ENSMUST00000110834.1|Ccdc32|ENSMUSG00000039983.7|coiled-coil domain containing 32
mm10_v2_chr2_-_34826187_34826240	0.0260076	Six6	ENSMUST00000113075.1|Fbxw2|ENSMUSG00000035949.9|F-box and WD-40 domain protein 2 	ENSMUST00000113080.2|Fbxw2|ENSMUSG00000035949.9|F-box and WD-40 domain protein 2 	ENSMUST00000091020.3|Fbxw2|ENSMUSG00000035949.9|F-box and WD-40 domain protein 2
mm10_v2_chr10_+_80603253_80603297	0.0259595	Six6	ENSMUST00000180350.1|Scamp4|ENSMUSG00000078441.4|secretory carrier membrane protein 4
mm10_v2_chr6_-_23248264_23248390	0.0256421	Six6	ENSMUST00000031709.5|Fezf1|ENSMUSG00000029697.5|Fez family zinc finger 1
mm10_v2_chr15_+_79895017_79895036	0.0254687	Six6	ENSMUST00000023054.7|Apobec3|ENSMUSG00000009585.11|apolipoprotein B mRNA editing enzyme, catalytic polypeptide 3
mm10_v2_chr15_+_82252397_82252475	0.0232123	Six6	ENSMUST00000136948.1|1500009C09Rik|ENSMUSG00000068099.4|RIKEN cDNA 1500009C09 gene
mm10_v2_chr16_-_92466081_92466187	0.0230117	Six6	ENSMUST00000060005.8|Rcan1|ENSMUSG00000022951.9|regulator of calcineurin 1
mm10_v2_chr13_+_112800878_112800903	0.0221903	Six6	ENSMUST00000016144.4|Ppap2a|ENSMUSG00000021759.7|phosphatidic acid phosphatase type 2A
mm10_v2_chr1_-_165634451_165634576	0.0206255	Six6	ENSMUST00000111435.2|Mpzl1|ENSMUSG00000026566.9|myelin protein zero-like 1 	ENSMUST00000068705.7|Mpzl1|ENSMUSG00000026566.9|myelin protein zero-like 1
mm10_v2_chr19_+_8764934_8765034	0.0203226	Six6	ENSMUST00000184663.1|Nxf1|ENSMUSG00000010097.7|nuclear RNA export factor 1
mm10_v2_chr2_-_13271268_13271348	0.0201646	Six6	ENSMUST00000137670.1|Rsu1|ENSMUSG00000026727.4|Ras suppressor protein 1 	ENSMUST00000114791.2|Rsu1|ENSMUSG00000026727.4|Ras suppressor protein 1
mm10_v2_chr6_+_115675983_115676004	0.0198647	Six6	ENSMUST00000068960.9|D830050J10Rik|ENSMUSG00000055396.9|RIKEN cDNA D830050J10 gene
mm10_v2_chr11_+_58104229_58104366	0.0193508	Six6	ENSMUST00000108843.1|Cnot8|ENSMUSG00000020515.7|CCR4-NOT transcription complex, subunit 8 	ENSMUST00000134896.1|Cnot8|ENSMUSG00000020515.7|CCR4-NOT transcription complex, subunit 8
mm10_v2_chr8_-_94918012_94918098	0.019142	Six6	ENSMUST00000077955.5|Ccdc102a|ENSMUSG00000063605.5|coiled-coil domain containing 102A
mm10_v2_chr5_-_129879038_129879094	0.0182056	Six6	ENSMUST00000026617.6|Phkg1|ENSMUSG00000025537.6|phosphorylase kinase gamma 1
mm10_v2_chr3_+_124321031_124321113	0.0161931	Six6	ENSMUST00000058994.4|Tram1l1|ENSMUSG00000044528.4|translocation associated membrane protein 1-like 1
mm10_v2_chr9_-_114564315_114564369	0.0155394	Six6	ENSMUST00000111816.2|Trim71|ENSMUSG00000079259.2|tripartite motif-containing 71
mm10_v2_chr11_-_105937798_105937871	0.0154538	Six6	ENSMUST00000183493.1|Cyb561|ENSMUSG00000019590.10|cytochrome b-561
mm10_v2_chr11_-_60417022_60417056	0.0152087	Six6	ENSMUST00000108721.1|Atpaf2|ENSMUSG00000042709.8|ATP synthase mitochondrial F1 complex assembly factor 2
mm10_v2_chr12_-_113422730_113422744	0.0148469	Six6	ENSMUST00000177715.1|Ighm|ENSMUSG00000076617.3|immunoglobulin heavy constant mu 	ENSMUST00000103426.1|Ighm|ENSMUSG00000076617.3|immunoglobulin heavy constant mu
mm10_v2_chr14_+_29978337_29978418	0.0145082	Six6	ENSMUST00000016115.4|Actr8|ENSMUSG00000015971.4|ARP8 actin-related protein 8
mm10_v2_chr17_+_25133385_25133434	0.0143219	Six6	ENSMUST00000040729.2|Clcn7|ENSMUSG00000036636.3|chloride channel 7
mm10_v2_chr5_-_88527841_88527891	0.0141759	Six6	ENSMUST00000087033.3|Igj|ENSMUSG00000067149.3|immunoglobulin joining chain
mm10_v2_chr7_+_128062657_128062687	0.0131882	Six6	ENSMUST00000120355.1|Itgam|ENSMUSG00000030786.12|integrin alpha M 	ENSMUST00000106240.2|Itgam|ENSMUSG00000030786.12|integrin alpha M 	ENSMUST00000098015.3|Itgam|ENSMUSG00000030786.12|integrin alpha M
mm10_v2_chr18_+_12599894_12599926	0.0126412	Six6	ENSMUST00000169401.1|Ttc39c|ENSMUSG00000024424.8|tetratricopeptide repeat domain 39C
mm10_v2_chr6_+_17743582_17743593	0.0120496	Six6	ENSMUST00000000674.6|St7|ENSMUSG00000029534.11|suppression of tumorigenicity 7 	ENSMUST00000077080.2|St7|ENSMUSG00000029534.11|suppression of tumorigenicity 7
mm10_v2_chr7_+_81762925_81762943	0.0114046	Six6	ENSMUST00000042166.4|Fam103a1|ENSMUSG00000038646.7|family with sequence similarity 103, member A1
mm10_v2_chr7_+_82611777_82611777	0.0104786	Six6	ENSMUST00000172784.1|Adamtsl3|ENSMUSG00000070469.5|ADAMTS-like 3
mm10_v2_chr3_+_108571699_108571699	0.0101103	Six6	ENSMUST00000143054.1|Taf13|ENSMUSG00000048100.7|TAF13 RNA polymerase II, TATA box binding protein (TBP)-associated factor
mm10_v2_chr7_-_100855403_100855440	0.00959919	Six6	ENSMUST00000156855.1|Relt|ENSMUSG00000008318.3|RELT tumor necrosis factor receptor
mm10_v2_chr5_+_25246775_25246802	0.00887712	Six6	ENSMUST00000144971.1|Galnt11|ENSMUSG00000038072.8|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 11
mm10_v2_chr8_+_34115030_34115030	0.0078711	Six6	ENSMUST00000095345.3|Mboat4|ENSMUSG00000071113.3|membrane bound O-acyltransferase domain containing 4
mm10_v2_chrY_-_6237995_6237995	0.007577	Six6	ENSMUST00000177612.1|Gm21746|ENSMUSG00000094346.1|predicted gene, 21746
mm10_v2_chrX_-_74373218_74373249	0.0058792	Six6	ENSMUST00000178691.1|Ubl4|ENSMUSG00000015290.9|ubiquitin-like 4 	ENSMUST00000114146.1|Slc10a3|ENSMUSG00000032806.7|solute carrier family 10 (sodium/bile acid cotransporter family), member 3
mm10_v2_chr9_+_119341487_119341515	0.00575082	Six6	ENSMUST00000175743.1|Acaa1a|ENSMUSG00000036138.10|acetyl-Coenzyme A acyltransferase 1A 	ENSMUST00000176397.1|Acaa1a|ENSMUSG00000036138.10|acetyl-Coenzyme A acyltransferase 1A
mm10_v2_chr2_+_70661556_70661692	0.00527724	Six6	ENSMUST00000112201.1|Gorasp2|ENSMUSG00000014959.6|golgi reassembly stacking protein 2 	ENSMUST00000028509.4|Gorasp2|ENSMUSG00000014959.6|golgi reassembly stacking protein 2 	ENSMUST00000133432.1|Gorasp2|ENSMUSG00000014959.6|golgi reassembly stacking protein 2 	ENSMUST00000112205.1|Gorasp2|ENSMUSG00000014959.6|golgi reassembly stacking protein 2
mm10_v2_chr19_-_55315980_55316038	0.00445913	Six6	ENSMUST00000076891.5|Zdhhc6|ENSMUSG00000024982.9|zinc finger, DHHC domain containing 6
mm10_v2_chr14_+_70553687_70553687	0.0042908	Six6	ENSMUST00000161069.1|Hr|ENSMUSG00000022096.8|hairless
mm10_v2_chr8_+_84831522_84831522	0.00391557	Six6	ENSMUST00000036734.5|Gadd45gip1|ENSMUSG00000033751.5|growth arrest and DNA-damage-inducible, gamma interacting protein 1
mm10_v2_chr3_-_158016419_158016453	0.00320158	Six6	ENSMUST00000127778.1|Srsf11|ENSMUSG00000055436.12|serine/arginine-rich splicing factor 11
mm10_v2_chr6_-_115675871_115675964	0.00250675	Six6	ENSMUST00000112949.1|Raf1|ENSMUSG00000000441.11|v-raf-leukemia viral oncogene 1
mm10_v2_chr1_-_23922283_23922366	0.00236232	Six6	ENSMUST00000027339.7|Smap1|ENSMUSG00000026155.7|small ArfGAP 1
