mm10_v2_chr5_+_139543889_139543904	7.51266	Zic4	ENSMUST00000174792.1|Uncx|ENSMUSG00000029546.11|UNC homeobox 	ENSMUST00000031523.8|Uncx|ENSMUSG00000029546.11|UNC homeobox
mm10_v2_chr12_+_112146187_112146222	3.79551	Zic4	ENSMUST00000128402.2|Kif26a|ENSMUSG00000021294.7|kinesin family member 26A
mm10_v2_chr19_+_47178820_47178997	3.24539	Zic4	ENSMUST00000111808.3|Neurl1a|ENSMUSG00000006435.9|neuralized homolog 1A (Drosophila)
mm10_v2_chr4_+_62965560_62965617	2.76327	Zic4	ENSMUST00000030043.6|Zfp618|ENSMUSG00000028358.9|zinc finger protein 618 	ENSMUST00000107415.1|Zfp618|ENSMUSG00000028358.9|zinc finger protein 618 	ENSMUST00000064814.5|Zfp618|ENSMUSG00000028358.9|zinc finger protein 618
mm10_v2_chrY_+_897782_897800	2.73312	Zic4	ENSMUST00000055032.7|Kdm5d|ENSMUSG00000056673.8|lysine (K)-specific demethylase 5D
mm10_v2_chr4_-_72200833_72200928	2.60637	Zic4	ENSMUST00000102848.2|Tle1|ENSMUSG00000008305.12|transducin-like enhancer of split 1, homolog of Drosophila E(spl) 	ENSMUST00000072695.6|Tle1|ENSMUSG00000008305.12|transducin-like enhancer of split 1, homolog of Drosophila E(spl) 	ENSMUST00000107337.1|Tle1|ENSMUSG00000008305.12|transducin-like enhancer of split 1, homolog of Drosophila E(spl) 	ENSMUST00000074216.7|Tle1|ENSMUSG00000008305.12|transducin-like enhancer of split 1, homolog of Drosophila E(spl)
mm10_v2_chr11_-_116335384_116335399	2.58728	Zic4	ENSMUST00000036215.7|Foxj1|ENSMUSG00000034227.7|forkhead box J1
mm10_v2_chr8_+_87473116_87473163	2.57209	Zic4	ENSMUST00000182650.1|Gm2694|ENSMUSG00000097248.2|predicted gene 2694 	ENSMUST00000182758.1|Gm2694|ENSMUSG00000097248.2|predicted gene 2694 	ENSMUST00000181898.1|Gm2694|ENSMUSG00000097248.2|predicted gene 2694
mm10_v2_chr19_+_48206025_48206163	2.49688	Zic4	ENSMUST00000078880.5|Sorcs3|ENSMUSG00000063434.5|sortilin-related VPS10 domain containing receptor 3
mm10_v2_chr7_-_17056669_17056696	2.37714	Zic4	ENSMUST00000037762.4|Hif3a|ENSMUSG00000004328.9|hypoxia inducible factor 3, alpha subunit
mm10_v2_chrX_-_49797700_49797755	2.37566	Zic4	ENSMUST00000033442.7|Igsf1|ENSMUSG00000031111.10|immunoglobulin superfamily, member 1 	ENSMUST00000114891.1|Igsf1|ENSMUSG00000031111.10|immunoglobulin superfamily, member 1
mm10_v2_chr7_-_137314394_137314445	2.28588	Zic4	ENSMUST00000168203.1|Ebf3|ENSMUSG00000010476.7|early B cell factor 3 	ENSMUST00000106118.2|Ebf3|ENSMUSG00000010476.7|early B cell factor 3 	ENSMUST00000169486.2|Ebf3|ENSMUSG00000010476.7|early B cell factor 3 	ENSMUST00000033378.5|Ebf3|ENSMUSG00000010476.7|early B cell factor 3
mm10_v2_chr4_+_128883549_128883611	2.26729	Zic4	ENSMUST00000035667.8|Trim62|ENSMUSG00000041000.8|tripartite motif-containing 62
mm10_v2_chr2_+_180499893_180499976	2.12187	Zic4	ENSMUST00000029084.2|Ntsr1|ENSMUSG00000027568.3|neurotensin receptor 1
mm10_v2_chr1_+_153665666_153665709	2.00063	Zic4	ENSMUST00000111814.1|Rgs8|ENSMUSG00000042671.6|regulator of G-protein signaling 8 	ENSMUST00000111810.1|Rgs8|ENSMUSG00000042671.6|regulator of G-protein signaling 8
mm10_v2_chr19_+_4099998_4100083	1.87869	Zic4	ENSMUST00000049658.7|Pitpnm1|ENSMUSG00000024851.7|phosphatidylinositol transfer protein, membrane-associated 1
mm10_v2_chr1_-_12991109_12991177	1.86276	Zic4	ENSMUST00000115403.2|Slco5a1|ENSMUSG00000025938.10|solute carrier organic anion transporter family, member 5A1 	ENSMUST00000115402.1|Slco5a1|ENSMUSG00000025938.10|solute carrier organic anion transporter family, member 5A1
mm10_v2_chr8_-_87959560_87959595	1.8511	Zic4	ENSMUST00000109655.2|Zfp423|ENSMUSG00000045333.9|zinc finger protein 423
mm10_v2_chr5_-_139325616_139325627	1.81424	Zic4	ENSMUST00000110865.1|Adap1|ENSMUSG00000056413.10|ArfGAP with dual PH domains 1
mm10_v2_chr1_+_153665274_153665325	1.8119	Zic4	ENSMUST00000152114.1|Rgs8|ENSMUSG00000042671.6|regulator of G-protein signaling 8 	ENSMUST00000111812.1|Rgs8|ENSMUSG00000042671.6|regulator of G-protein signaling 8
mm10_v2_chr8_-_45382198_45382291	1.79584	Zic4	ENSMUST00000093526.6|Fam149a|ENSMUSG00000070044.9|family with sequence similarity 149, member A
mm10_v2_chr19_-_12501996_12502152	1.79466	Zic4	ENSMUST00000045521.7|Dtx4|ENSMUSG00000039982.7|deltex 4 homolog (Drosophila)
mm10_v2_chr2_+_164960809_164960833	1.78441	Zic4	ENSMUST00000124372.1|Slc12a5|ENSMUSG00000017740.10|solute carrier family 12, member 5
mm10_v2_chr7_-_143460989_143461050	1.78074	Zic4	ENSMUST00000167912.1|Cdkn1c|ENSMUSG00000037664.6|cyclin-dependent kinase inhibitor 1C (P57) 	ENSMUST00000037287.6|Cdkn1c|ENSMUSG00000037664.6|cyclin-dependent kinase inhibitor 1C (P57)
mm10_v2_chr17_-_29237759_29237827	1.73617	Zic4	ENSMUST00000137727.1|Cpne5|ENSMUSG00000024008.9|copine V 	ENSMUST00000024805.7|Cpne5|ENSMUSG00000024008.9|copine V
mm10_v2_chr7_-_47133684_47133720	1.66359	Zic4	ENSMUST00000102626.1|Ptpn5|ENSMUSG00000030854.9|protein tyrosine phosphatase, non-receptor type 5
mm10_v2_chr14_-_52316323_52316344	1.65481	Zic4	ENSMUST00000135523.1|Sall2|ENSMUSG00000049532.7|sal-like 2 (Drosophila)
mm10_v2_chr8_+_87472805_87472822	1.5765	Zic4	ENSMUST00000180700.2|Gm2694|ENSMUSG00000097248.2|predicted gene 2694 	ENSMUST00000182174.1|Gm2694|ENSMUSG00000097248.2|predicted gene 2694 	ENSMUST00000181159.1|Gm2694|ENSMUSG00000097248.2|predicted gene 2694
mm10_v2_chr9_-_63146980_63147011	1.57451	Zic4	ENSMUST00000055281.7|Skor1|ENSMUSG00000022245.9|SKI family transcriptional corepressor 1 	ENSMUST00000119146.1|Skor1|ENSMUSG00000022245.9|SKI family transcriptional corepressor 1
mm10_v2_chr3_-_110142996_110143010	1.54106	Zic4	ENSMUST00000156177.2|Ntng1|ENSMUSG00000059857.9|netrin G1
mm10_v2_chr7_-_47133395_47133437	1.51256	Zic4	ENSMUST00000107617.1|Ptpn5|ENSMUSG00000030854.9|protein tyrosine phosphatase, non-receptor type 5
mm10_v2_chr8_+_87472838_87472849	1.46128	Zic4	ENSMUST00000180806.2|Gm2694|ENSMUSG00000097248.2|predicted gene 2694
mm10_v2_chr1_+_153665587_153665595	1.43461	Zic4	ENSMUST00000147700.1|Rgs8|ENSMUSG00000042671.6|regulator of G-protein signaling 8
mm10_v2_chr2_-_152951688_152951700	1.43017	Zic4	ENSMUST00000109811.3|Dusp15|ENSMUSG00000042662.10|dual specificity phosphatase-like 15
mm10_v2_chr7_-_70360593_70360746	1.411	Zic4	ENSMUST00000032768.7|Nr2f2|ENSMUSG00000030551.7|nuclear receptor subfamily 2, group F, member 2
mm10_v2_chr9_-_29412204_29412277	1.23399	Zic4	ENSMUST00000115237.1|Ntm|ENSMUSG00000059974.4|neurotrimin
mm10_v2_chr5_-_24527276_24527276	1.23255	Zic4	ENSMUST00000088311.4|Gbx1|ENSMUSG00000067724.4|gastrulation brain homeobox 1
mm10_v2_chr3_-_8667033_8667046	1.17809	Zic4	ENSMUST00000042412.3|Hey1|ENSMUSG00000040289.3|hairy/enhancer-of-split related with YRPW motif 1
mm10_v2_chr4_-_133602168_133602168	1.17766	Zic4	ENSMUST00000057311.3|Sfn|ENSMUSG00000047281.3|stratifin
mm10_v2_chr11_-_69920892_69920966	1.16765	Zic4	ENSMUST00000152589.1|Eif5a|ENSMUSG00000078812.4|eukaryotic translation initiation factor 5A 	ENSMUST00000108612.1|Eif5a|ENSMUSG00000078812.4|eukaryotic translation initiation factor 5A 	ENSMUST00000108611.1|Eif5a|ENSMUSG00000078812.4|eukaryotic translation initiation factor 5A
mm10_v2_chr1_+_153665627_153665657	1.15971	Zic4	ENSMUST00000147482.1|Rgs8|ENSMUSG00000042671.6|regulator of G-protein signaling 8
mm10_v2_chr2_-_152951547_152951608	1.15892	Zic4	ENSMUST00000037715.6|Dusp15|ENSMUSG00000042662.10|dual specificity phosphatase-like 15
mm10_v2_chr19_+_41482632_41482688	1.09687	Zic4	ENSMUST00000067795.5|Lcor|ENSMUSG00000025019.9|ligand dependent nuclear receptor corepressor
mm10_v2_chr4_+_152338619_152338709	1.08889	Zic4	ENSMUST00000030775.5|Chd5|ENSMUSG00000005045.10|chromodomain helicase DNA binding protein 5 	ENSMUST00000164662.1|Chd5|ENSMUSG00000005045.10|chromodomain helicase DNA binding protein 5
mm10_v2_chr11_-_87987528_87987537	1.07874	Zic4	ENSMUST00000020775.2|Dynll2|ENSMUSG00000020483.8|dynein light chain LC8-type 2
mm10_v2_chr9_-_35558522_35558548	1.06482	Zic4	ENSMUST00000034612.5|Ddx25|ENSMUSG00000032101.5|DEAD (Asp-Glu-Ala-Asp) box polypeptide 25
mm10_v2_chr6_+_97807014_97807067	1.04208	Zic4	ENSMUST00000043637.7|Mitf|ENSMUSG00000035158.9|microphthalmia-associated transcription factor
mm10_v2_chr9_-_107710475_107710475	1.00102	Zic4	ENSMUST00000080560.3|Sema3f|ENSMUSG00000034684.7|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F
mm10_v2_chr4_+_152338887_152338967	1.00018	Zic4	ENSMUST00000005175.4|Chd5|ENSMUSG00000005045.10|chromodomain helicase DNA binding protein 5
mm10_v2_chr4_+_141368116_141368220	0.992273	Zic4	ENSMUST00000006380.4|Fam131c|ENSMUSG00000006218.4|family with sequence similarity 131, member C
mm10_v2_chr4_+_117096049_117096083	0.947354	Zic4	ENSMUST00000030443.5|Ptch2|ENSMUSG00000028681.5|patched homolog 2
mm10_v2_chr5_-_113310729_113310788	0.92	Zic4	ENSMUST00000112325.1|Sgsm1|ENSMUSG00000042216.7|small G protein signaling modulator 1 	ENSMUST00000048112.6|Sgsm1|ENSMUSG00000042216.7|small G protein signaling modulator 1
mm10_v2_chr2_-_152951456_152951540	0.909837	Zic4	ENSMUST00000123121.2|Dusp15|ENSMUSG00000042662.10|dual specificity phosphatase-like 15
mm10_v2_chr17_-_71310952_71310969	0.868794	Zic4	ENSMUST00000024849.9|Emilin2|ENSMUSG00000024053.10|elastin microfibril interfacer 2
mm10_v2_chr11_+_93099284_93099331	0.86863	Zic4	ENSMUST00000092780.3|Car10|ENSMUSG00000056158.8|carbonic anhydrase 10 	ENSMUST00000107863.2|Car10|ENSMUSG00000056158.8|carbonic anhydrase 10
mm10_v2_chr4_-_57143437_57143624	0.857593	Zic4	ENSMUST00000095076.3|Epb4.1l4b|ENSMUSG00000028434.6|erythrocyte protein band 4.1-like 4b 	ENSMUST00000030142.3|Epb4.1l4b|ENSMUSG00000028434.6|erythrocyte protein band 4.1-like 4b
mm10_v2_chrX_-_107403295_107403404	0.832812	Zic4	ENSMUST00000033591.5|Itm2a|ENSMUSG00000031239.5|integral membrane protein 2A
mm10_v2_chr12_+_3807017_3807063	0.822437	Zic4	ENSMUST00000020991.8|Dnmt3a|ENSMUSG00000020661.9|DNA methyltransferase 3A 	ENSMUST00000172509.1|Dnmt3a|ENSMUSG00000020661.9|DNA methyltransferase 3A
mm10_v2_chr5_-_113310697_113310727	0.816942	Zic4	ENSMUST00000154248.1|Sgsm1|ENSMUSG00000042216.7|small G protein signaling modulator 1
mm10_v2_chr7_-_25297967_25298005	0.813586	Zic4	ENSMUST00000005583.5|Pafah1b3|ENSMUSG00000005447.6|platelet-activating factor acetylhydrolase, isoform 1b, subunit 3
mm10_v2_chr17_+_46297917_46298083	0.788099	Zic4	ENSMUST00000166617.1|Dlk2|ENSMUSG00000047428.8|delta-like 2 homolog (Drosophila) 	ENSMUST00000170271.1|Dlk2|ENSMUSG00000047428.8|delta-like 2 homolog (Drosophila)
mm10_v2_chrX_-_104671048_104671071	0.764633	Zic4	ENSMUST00000042070.5|Zdhhc15|ENSMUSG00000033906.5|zinc finger, DHHC domain containing 15
mm10_v2_chr8_-_83166170_83166170	0.751443	Zic4	ENSMUST00000098605.2|Gm10645|ENSMUSG00000074228.2|predicted gene 10645
mm10_v2_chr3_-_8964037_8964101	0.748093	Zic4	ENSMUST00000091354.5|Tpd52|ENSMUSG00000027506.9|tumor protein D52 	ENSMUST00000094381.4|Tpd52|ENSMUSG00000027506.9|tumor protein D52
mm10_v2_chr5_+_43233463_43233491	0.720334	Zic4	ENSMUST00000169035.1|Cpeb2|ENSMUSG00000039782.8|cytoplasmic polyadenylation element binding protein 2 	ENSMUST00000166713.1|Cpeb2|ENSMUSG00000039782.8|cytoplasmic polyadenylation element binding protein 2
mm10_v2_chr12_-_67222549_67222578	0.694823	Zic4	ENSMUST00000037181.8|Mdga2|ENSMUSG00000034912.10|MAM domain containing glycosylphosphatidylinositol anchor 2
mm10_v2_chr11_-_101171302_101171353	0.683834	Zic4	ENSMUST00000164474.1|Plekhh3|ENSMUSG00000035172.9|pleckstrin homology domain containing, family H (with MyTH4 domain) member 3 	ENSMUST00000043397.7|Plekhh3|ENSMUSG00000035172.9|pleckstrin homology domain containing, family H (with MyTH4 domain) member 3
mm10_v2_chr4_+_104367549_104367592	0.68086	Zic4	ENSMUST00000106830.2|Dab1|ENSMUSG00000028519.10|disabled 1
mm10_v2_chr8_-_116732991_116733076	0.679924	Zic4	ENSMUST00000109102.2|Cdyl2|ENSMUSG00000031758.9|chromodomain protein, Y chromosome-like 2
mm10_v2_chr7_-_25297866_25297958	0.677929	Zic4	ENSMUST00000148150.1|Pafah1b3|ENSMUSG00000005447.6|platelet-activating factor acetylhydrolase, isoform 1b, subunit 3 	ENSMUST00000155118.1|Pafah1b3|ENSMUSG00000005447.6|platelet-activating factor acetylhydrolase, isoform 1b, subunit 3
mm10_v2_chr1_+_192190771_192190821	0.66517	Zic4	ENSMUST00000078470.5|Kcnh1|ENSMUSG00000058248.6|potassium voltage-gated channel, subfamily H (eag-related), member 1 	ENSMUST00000110844.1|Kcnh1|ENSMUSG00000058248.6|potassium voltage-gated channel, subfamily H (eag-related), member 1
mm10_v2_chr11_-_116853083_116853099	0.65519	Zic4	ENSMUST00000092404.6|Srsf2|ENSMUSG00000034120.12|serine/arginine-rich splicing factor 2
mm10_v2_chr17_-_34031684_34031699	0.633289	Zic4	ENSMUST00000169397.1|Slc39a7|ENSMUSG00000024327.9|solute carrier family 39 (zinc transporter), member 7
mm10_v2_chr2_-_153529941_153529985	0.623038	Zic4	ENSMUST00000035346.7|8430427H17Rik|ENSMUSG00000061411.6|RIKEN cDNA 8430427H17 gene
mm10_v2_chr17_-_34031544_34031634	0.604073	Zic4	ENSMUST00000025186.8|Slc39a7|ENSMUSG00000024327.9|solute carrier family 39 (zinc transporter), member 7
mm10_v2_chr15_-_97831460_97831519	0.591128	Zic4	ENSMUST00000079838.7|Hdac7|ENSMUSG00000022475.12|histone deacetylase 7 	ENSMUST00000118294.1|Hdac7|ENSMUSG00000022475.12|histone deacetylase 7
mm10_v2_chr3_+_137864573_137864613	0.588373	Zic4	ENSMUST00000174561.1|H2afz|ENSMUSG00000037894.7|H2A histone family, member Z 	ENSMUST00000173790.1|H2afz|ENSMUSG00000037894.7|H2A histone family, member Z
mm10_v2_chrX_-_10216918_10216921	0.587722	Zic4	ENSMUST00000072393.2|Rpgr|ENSMUSG00000031174.11|retinitis pigmentosa GTPase regulator 	ENSMUST00000044598.6|Rpgr|ENSMUSG00000031174.11|retinitis pigmentosa GTPase regulator 	ENSMUST00000073392.4|Rpgr|ENSMUSG00000031174.11|retinitis pigmentosa GTPase regulator 	ENSMUST00000115533.1|Rpgr|ENSMUSG00000031174.11|retinitis pigmentosa GTPase regulator 	ENSMUST00000115532.1|Rpgr|ENSMUSG00000031174.11|retinitis pigmentosa GTPase regulator
mm10_v2_chr11_+_75732869_75732975	0.586579	Zic4	ENSMUST00000067664.3|Ywhae|ENSMUSG00000020849.7|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide
mm10_v2_chr17_-_34031644_34031667	0.583022	Zic4	ENSMUST00000171872.1|Slc39a7|ENSMUSG00000024327.9|solute carrier family 39 (zinc transporter), member 7
mm10_v2_chr6_+_99692679_99692679	0.581128	Zic4	ENSMUST00000101122.1|Gpr27|ENSMUSG00000072875.1|G protein-coupled receptor 27
mm10_v2_chr12_-_91746020_91746089	0.579431	Zic4	ENSMUST00000166967.1|Ston2|ENSMUSG00000020961.8|stonin 2
mm10_v2_chr12_-_56535047_56535106	0.571113	Zic4	ENSMUST00000178477.2|Nkx2-1|ENSMUSG00000001496.9|NK2 homeobox 1
mm10_v2_chr11_+_46055973_46056068	0.556556	Zic4	ENSMUST00000011400.7|Adam19|ENSMUSG00000011256.10|a disintegrin and metallopeptidase domain 19 (meltrin beta)
mm10_v2_chr5_-_142509653_142509664	0.543648	Zic4	ENSMUST00000110784.1|Radil|ENSMUSG00000029576.11|Ras association and DIL domains
mm10_v2_chr16_+_35983424_35983582	0.535652	Zic4	ENSMUST00000173555.1|Kpna1|ENSMUSG00000022905.6|karyopherin (importin) alpha 1
mm10_v2_chr3_+_133310093_133310145	0.531939	Zic4	ENSMUST00000029644.9|Ppa2|ENSMUSG00000028013.10|pyrophosphatase (inorganic) 2 	ENSMUST00000122334.1|Ppa2|ENSMUSG00000028013.10|pyrophosphatase (inorganic) 2
mm10_v2_chr16_+_35983307_35983395	0.505377	Zic4	ENSMUST00000004054.6|Kpna1|ENSMUSG00000022905.6|karyopherin (importin) alpha 1
mm10_v2_chr19_+_6975048_6975071	0.493461	Zic4	ENSMUST00000070850.6|Ppp1r14b|ENSMUSG00000056612.6|protein phosphatase 1, regulatory (inhibitor) subunit 14B
mm10_v2_chr7_-_45052865_45052914	0.486421	Zic4	ENSMUST00000057293.6|Prr12|ENSMUSG00000046574.7|proline rich 12
mm10_v2_chr16_+_16213318_16213364	0.479485	Zic4	ENSMUST00000162150.1|Pkp2|ENSMUSG00000041957.9|plakophilin 2 	ENSMUST00000161342.1|Pkp2|ENSMUSG00000041957.9|plakophilin 2 	ENSMUST00000039408.2|Pkp2|ENSMUSG00000041957.9|plakophilin 2
mm10_v2_chr11_+_98741871_98741894	0.475004	Zic4	ENSMUST00000103139.4|Thra|ENSMUSG00000058756.7|thyroid hormone receptor alpha
mm10_v2_chr14_-_54641347_54641374	0.458023	Zic4	ENSMUST00000067784.6|Cdh24|ENSMUSG00000059674.6|cadherin-like 24
mm10_v2_chr4_-_108833544_108833597	0.457009	Zic4	ENSMUST00000102740.1|Btf3l4|ENSMUSG00000028568.10|basic transcription factor 3-like 4 	ENSMUST00000102741.1|Btf3l4|ENSMUSG00000028568.10|basic transcription factor 3-like 4
mm10_v2_chr2_-_167661496_167661591	0.451919	Zic4	ENSMUST00000125544.2|Gm20431|ENSMUSG00000089739.2|predicted gene 20431 	ENSMUST00000006587.6|Tmem189|ENSMUSG00000090213.1|transmembrane protein 189
mm10_v2_chr17_-_26508463_26508519	0.451474	Zic4	ENSMUST00000025025.6|Dusp1|ENSMUSG00000024190.6|dual specificity phosphatase 1
mm10_v2_chr2_-_154569845_154569892	0.44684	Zic4	ENSMUST00000103145.4|E2f1|ENSMUSG00000027490.11|E2F transcription factor 1
mm10_v2_chr18_+_56707725_56707940	0.445791	Zic4	ENSMUST00000025486.8|Lmnb1|ENSMUSG00000024590.8|lamin B1
mm10_v2_chr7_-_34654342_34654398	0.419023	Zic4	ENSMUST00000108069.1|Kctd15|ENSMUSG00000030499.3|potassium channel tetramerisation domain containing 15
mm10_v2_chr11_+_98741805_98741816	0.414632	Zic4	ENSMUST00000064187.5|Thra|ENSMUSG00000058756.7|thyroid hormone receptor alpha
mm10_v2_chr4_-_11386757_11386783	0.405083	Zic4	ENSMUST00000108313.1|Esrp1|ENSMUSG00000040728.9|epithelial splicing regulatory protein 1 	ENSMUST00000108311.2|Esrp1|ENSMUSG00000040728.9|epithelial splicing regulatory protein 1
mm10_v2_chr17_+_79051906_79051906	0.400743	Zic4	ENSMUST00000040789.4|Qpct|ENSMUSG00000024084.7|glutaminyl-peptide cyclotransferase (glutaminyl cyclase)
mm10_v2_chr3_+_107595031_107595164	0.397329	Zic4	ENSMUST00000014747.1|Alx3|ENSMUSG00000014603.1|aristaless-like homeobox 3
mm10_v2_chr11_-_102946688_102946725	0.396539	Zic4	ENSMUST00000057849.5|C1ql1|ENSMUSG00000045532.5|complement component 1, q subcomponent-like 1
mm10_v2_chrX_-_10216437_10216482	0.387061	Zic4	ENSMUST00000115534.1|Rpgr|ENSMUSG00000031174.11|retinitis pigmentosa GTPase regulator
mm10_v2_chr11_-_59290746_59290758	0.374712	Zic4	ENSMUST00000010044.7|Wnt3a|ENSMUSG00000009900.7|wingless-related MMTV integration site 3A
mm10_v2_chr12_-_57546121_57546141	0.367662	Zic4	ENSMUST00000044380.6|Foxa1|ENSMUSG00000035451.6|forkhead box A1
mm10_v2_chr4_+_109280365_109280412	0.353895	Zic4	ENSMUST00000177089.1|Eps15|ENSMUSG00000028552.7|epidermal growth factor receptor pathway substrate 15 	ENSMUST00000175776.1|Eps15|ENSMUSG00000028552.7|epidermal growth factor receptor pathway substrate 15 	ENSMUST00000132165.2|Eps15|ENSMUSG00000028552.7|epidermal growth factor receptor pathway substrate 15
mm10_v2_chr3_-_107986408_107986466	0.352345	Zic4	ENSMUST00000012348.2|Gstm2|ENSMUSG00000040562.6|glutathione S-transferase, mu 2
mm10_v2_chr2_-_71367749_71367797	0.350032	Zic4	ENSMUST00000151937.1|Slc25a12|ENSMUSG00000027010.10|solute carrier family 25 (mitochondrial carrier, Aralar), member 12
mm10_v2_chr11_-_99230998_99231019	0.342556	Zic4	ENSMUST00000103133.3|Smarce1|ENSMUSG00000037935.10|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1
mm10_v2_chr4_+_129513581_129513644	0.337322	Zic4	ENSMUST00000062356.6|Marcksl1|ENSMUSG00000047945.6|MARCKS-like 1
mm10_v2_chr7_-_16476765_16476792	0.32717	Zic4	ENSMUST00000002053.8|Npas1|ENSMUSG00000001988.8|neuronal PAS domain protein 1
mm10_v2_chr5_-_134688568_134688590	0.326341	Zic4	ENSMUST00000015137.3|Limk1|ENSMUSG00000029674.7|LIM-domain containing, protein kinase
mm10_v2_chr3_-_107986360_107986399	0.318085	Zic4	ENSMUST00000066530.6|Gstm2|ENSMUSG00000040562.6|glutathione S-transferase, mu 2
mm10_v2_chr11_+_77515104_77515128	0.317952	Zic4	ENSMUST00000094004.4|Abhd15|ENSMUSG00000000686.11|abhydrolase domain containing 15
mm10_v2_chr11_+_75733037_75733148	0.301195	Zic4	ENSMUST00000131398.1|Ywhae|ENSMUSG00000020849.7|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide
mm10_v2_chr15_-_75909289_75909311	0.29063	Zic4	ENSMUST00000145764.1|Eef1d|ENSMUSG00000055762.9|eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein) 	ENSMUST00000116440.2|Eef1d|ENSMUSG00000055762.9|eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein) 	ENSMUST00000151066.1|Eef1d|ENSMUSG00000055762.9|eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein)
mm10_v2_chr9_+_62838767_62838816	0.279232	Zic4	ENSMUST00000034776.6|Cln6|ENSMUSG00000032245.6|ceroid-lipofuscinosis, neuronal 6
mm10_v2_chr11_-_106160708_106160860	0.278476	Zic4	ENSMUST00000106875.1|Limd2|ENSMUSG00000040699.7|LIM domain containing 2
mm10_v2_chr10_-_80577285_80577327	0.277514	Zic4	ENSMUST00000038558.8|Klf16|ENSMUSG00000035397.8|Kruppel-like factor 16
mm10_v2_chr3_+_61002786_61002811	0.264319	Zic4	ENSMUST00000029331.1|P2ry1|ENSMUSG00000027765.1|purinergic receptor P2Y, G-protein coupled 1
mm10_v2_chr10_-_117845935_117845949	0.262407	Zic4	ENSMUST00000064667.7|Rap1b|ENSMUSG00000052681.7|RAS related protein 1b
mm10_v2_chr1_+_91179822_91179822	0.252021	Zic4	ENSMUST00000097648.4|Ramp1|ENSMUSG00000034353.8|receptor (calcitonin) activity modifying protein 1 	ENSMUST00000165855.1|Ramp1|ENSMUSG00000034353.8|receptor (calcitonin) activity modifying protein 1
mm10_v2_chrX_+_101429555_101429708	0.248921	Zic4	ENSMUST00000033673.6|Nono|ENSMUSG00000031311.11|non-POU-domain-containing, octamer binding protein
mm10_v2_chr7_+_28458658_28458658	0.246347	Zic4	ENSMUST00000108288.3|Lrfn1|ENSMUSG00000030600.9|leucine rich repeat and fibronectin type III domain containing 1 	ENSMUST00000055110.9|Lrfn1|ENSMUSG00000030600.9|leucine rich repeat and fibronectin type III domain containing 1
mm10_v2_chr10_-_81365807_81365825	0.24268	Zic4	ENSMUST00000020456.4|4930404N11Rik|ENSMUSG00000020234.4|RIKEN cDNA 4930404N11 gene
mm10_v2_chr9_+_108460518_108460571	0.238019	Zic4	ENSMUST00000061209.5|Ccdc71|ENSMUSG00000049305.5|coiled-coil domain containing 71
mm10_v2_chr17_-_57059795_57059863	0.229101	Zic4	ENSMUST00000040280.7|Slc25a23|ENSMUSG00000046329.8|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 23
mm10_v2_chr4_-_108833608_108833626	0.225822	Zic4	ENSMUST00000102742.4|Btf3l4|ENSMUSG00000028568.10|basic transcription factor 3-like 4
mm10_v2_chr8_+_107031218_107031229	0.224594	Zic4	ENSMUST00000034388.9|Vps4a|ENSMUSG00000031913.9|vacuolar protein sorting 4a (yeast)
mm10_v2_chr10_+_18055711_18056004	0.222254	Zic4	ENSMUST00000154718.1|Reps1|ENSMUSG00000019854.10|RalBP1 associated Eps domain containing protein 	ENSMUST00000126390.1|Reps1|ENSMUSG00000019854.10|RalBP1 associated Eps domain containing protein 	ENSMUST00000164556.1|Reps1|ENSMUSG00000019854.10|RalBP1 associated Eps domain containing protein 	ENSMUST00000150029.1|Reps1|ENSMUSG00000019854.10|RalBP1 associated Eps domain containing protein
mm10_v2_chr11_-_115535804_115535863	0.208584	Zic4	ENSMUST00000117589.1|Sumo2|ENSMUSG00000020738.10|SMT3 suppressor of mif two 3 homolog 2 (yeast) 	ENSMUST00000121185.1|Sumo2|ENSMUSG00000020738.10|SMT3 suppressor of mif two 3 homolog 2 (yeast)
mm10_v2_chr8_+_72240018_72240045	0.20389	Zic4	ENSMUST00000003117.8|Ap1m1|ENSMUSG00000003033.8|adaptor-related protein complex AP-1, mu subunit 1
mm10_v2_chr17_+_37045963_37045975	0.203788	Zic4	ENSMUST00000025338.9|Gabbr1|ENSMUSG00000024462.11|gamma-aminobutyric acid (GABA) B receptor, 1
mm10_v2_chr19_-_6235804_6235872	0.203699	Zic4	ENSMUST00000025695.9|Ppp2r5b|ENSMUSG00000024777.9|protein phosphatase 2, regulatory subunit B (B56), beta isoform
mm10_v2_chr7_-_127026479_127026496	0.202498	Zic4	ENSMUST00000032916.4|Maz|ENSMUSG00000030678.6|MYC-associated zinc finger protein (purine-binding transcription factor)
mm10_v2_chr15_-_75909319_75909355	0.200382	Zic4	ENSMUST00000089680.3|Eef1d|ENSMUSG00000055762.9|eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein) 	ENSMUST00000141268.1|Eef1d|ENSMUSG00000055762.9|eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein) 	ENSMUST00000023235.6|Eef1d|ENSMUSG00000055762.9|eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein) 	ENSMUST00000109972.2|Eef1d|ENSMUSG00000055762.9|eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein) 	ENSMUST00000089681.5|Eef1d|ENSMUSG00000055762.9|eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein) 	ENSMUST00000109975.3|Eef1d|ENSMUSG00000055762.9|eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein) 	ENSMUST00000154584.1|Eef1d|ENSMUSG00000055762.9|eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein)
mm10_v2_chr7_+_45873127_45873187	0.200003	Zic4	ENSMUST00000107718.1|Kdelr1|ENSMUSG00000002778.6|KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 1
mm10_v2_chr11_-_115536181_115536276	0.190846	Zic4	ENSMUST00000118155.1|Sumo2|ENSMUSG00000020738.10|SMT3 suppressor of mif two 3 homolog 2 (yeast) 	ENSMUST00000153892.1|Sumo2|ENSMUSG00000020738.10|SMT3 suppressor of mif two 3 homolog 2 (yeast)
mm10_v2_chr2_+_147187424_147187424	0.177788	Zic4	ENSMUST00000144411.1|6430503K07Rik|ENSMUSG00000053545.6|RIKEN cDNA 6430503K07 gene
mm10_v2_chr10_+_45335751_45335789	0.167634	Zic4	ENSMUST00000095715.3|Bves|ENSMUSG00000071317.3|blood vessel epicardial substance
mm10_v2_chr10_-_127030813_127030840	0.160044	Zic4	ENSMUST00000040560.4|Tsfm|ENSMUSG00000040521.5|Ts translation elongation factor, mitochondrial
mm10_v2_chr17_-_29347902_29347940	0.149486	Zic4	ENSMUST00000095427.4|Mtch1|ENSMUSG00000024012.11|mitochondrial carrier homolog 1 (C. elegans) 	ENSMUST00000118366.1|Mtch1|ENSMUSG00000024012.11|mitochondrial carrier homolog 1 (C. elegans)
mm10_v2_chr7_+_45872772_45872857	0.149094	Zic4	ENSMUST00000002855.5|Kdelr1|ENSMUSG00000002778.6|KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 1 	ENSMUST00000107719.1|Kdelr1|ENSMUSG00000002778.6|KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 1
mm10_v2_chr8_-_64693027_64693040	0.143072	Zic4	ENSMUST00000048967.7|Cpe|ENSMUSG00000037852.7|carboxypeptidase E
mm10_v2_chr7_-_133123770_133123876	0.132707	Zic4	ENSMUST00000164896.1|Ctbp2|ENSMUSG00000030970.10|C-terminal binding protein 2 	ENSMUST00000171968.1|Ctbp2|ENSMUSG00000030970.10|C-terminal binding protein 2
mm10_v2_chr8_-_36613937_36613948	0.124701	Zic4	ENSMUST00000033923.7|Dlc1|ENSMUSG00000031523.10|deleted in liver cancer 1
mm10_v2_chr2_-_73775341_73775378	0.123733	Zic4	ENSMUST00000112024.3|Chn1|ENSMUSG00000056486.11|chimerin (chimaerin) 1 	ENSMUST00000166199.1|Chn1|ENSMUSG00000056486.11|chimerin (chimaerin) 1 	ENSMUST00000180045.1|Chn1|ENSMUSG00000056486.11|chimerin (chimaerin) 1
mm10_v2_chr18_+_10725530_10725564	0.122119	Zic4	ENSMUST00000052838.4|Mib1|ENSMUSG00000024294.7|mindbomb homolog 1 (Drosophila)
mm10_v2_chr10_-_61979073_61979108	0.117223	Zic4	ENSMUST00000105453.1|Col13a1|ENSMUSG00000058806.8|collagen, type XIII, alpha 1 	ENSMUST00000105452.2|Col13a1|ENSMUSG00000058806.8|collagen, type XIII, alpha 1 	ENSMUST00000105454.2|Col13a1|ENSMUSG00000058806.8|collagen, type XIII, alpha 1
mm10_v2_chr14_+_26119811_26119811	0.117136	Zic4	ENSMUST00000173617.1|Duxbl2|ENSMUSG00000072675.6|doubl homeobox B-like 2
mm10_v2_chr8_+_72240315_72240346	0.10906	Zic4	ENSMUST00000126885.1|Ap1m1|ENSMUSG00000003033.8|adaptor-related protein complex AP-1, mu subunit 1
mm10_v2_chr11_-_89538556_89538556	0.108804	Zic4	ENSMUST00000169201.1|Ankfn1|ENSMUSG00000047773.6|ankyrin-repeat and fibronectin type III domain containing 1
mm10_v2_chr11_+_101468164_101468175	0.102527	Zic4	ENSMUST00000001347.6|Rnd2|ENSMUSG00000001313.6|Rho family GTPase 2
mm10_v2_chr12_+_24651346_24651409	0.102381	Zic4	ENSMUST00000020982.5|Klf11|ENSMUSG00000020653.5|Kruppel-like factor 11
mm10_v2_chr9_+_46012810_46012821	0.101501	Zic4	ENSMUST00000126865.1|Sik3|ENSMUSG00000034135.8|SIK family kinase 3
mm10_v2_chr11_-_78497734_78497793	0.0994837	Zic4	ENSMUST00000061174.6|Sarm1|ENSMUSG00000050132.7|sterile alpha and HEAT/Armadillo motif containing 1
mm10_v2_chr10_-_7663245_7663309	0.0989768	Zic4	ENSMUST00000163085.1|Pcmt1|ENSMUSG00000019795.11|protein-L-isoaspartate (D-aspartate) O-methyltransferase 1 	ENSMUST00000159917.1|Pcmt1|ENSMUSG00000019795.11|protein-L-isoaspartate (D-aspartate) O-methyltransferase 1
mm10_v2_chr8_+_13757663_13757714	0.0941205	Zic4	ENSMUST00000043962.8|Cdc16|ENSMUSG00000038416.8|CDC16 cell division cycle 16
mm10_v2_chr15_-_98831498_98831509	0.0937089	Zic4	ENSMUST00000168846.1|Prkag1|ENSMUSG00000067713.6|protein kinase, AMP-activated, gamma 1 non-catalytic subunit
mm10_v2_chr7_-_98119482_98119524	0.0811723	Zic4	ENSMUST00000138627.1|Myo7a|ENSMUSG00000030761.9|myosin VIIA 	ENSMUST00000107127.1|Myo7a|ENSMUSG00000030761.9|myosin VIIA 	ENSMUST00000107128.1|Myo7a|ENSMUSG00000030761.9|myosin VIIA
mm10_v2_chr17_+_26113286_26113363	0.0794345	Zic4	ENSMUST00000025010.7|Tmem8|ENSMUSG00000024180.7|transmembrane protein 8 (five membrane-spanning domains)
mm10_v2_chr5_-_125341043_125341112	0.0742274	Zic4	ENSMUST00000111390.1|Scarb1|ENSMUSG00000037936.9|scavenger receptor class B, member 1 	ENSMUST00000086075.6|Scarb1|ENSMUSG00000037936.9|scavenger receptor class B, member 1
mm10_v2_chr11_-_70669283_70669416	0.0708695	Zic4	ENSMUST00000129434.1|Spag7|ENSMUSG00000018287.6|sperm associated antigen 7 	ENSMUST00000018431.6|Spag7|ENSMUSG00000018287.6|sperm associated antigen 7
mm10_v2_chr2_+_91922178_91922194	0.0627896	Zic4	ENSMUST00000170432.1|Chrm4|ENSMUSG00000040495.3|cholinergic receptor, muscarinic 4
mm10_v2_chr4_+_42158092_42158092	0.0603952	Zic4	ENSMUST00000098122.2|Gm13306|ENSMUSG00000073877.4|predicted gene 13306
mm10_v2_chr14_+_26259109_26259109	0.0593897	Zic4	ENSMUST00000174494.1|Duxbl3|ENSMUSG00000072672.4|double homeobox B-like 3
mm10_v2_chr1_+_86064619_86064648	0.0563777	Zic4	ENSMUST00000027432.8|Psmd1|ENSMUSG00000026229.11|proteasome (prosome, macropain) 26S subunit, non-ATPase, 1
mm10_v2_chr8_-_88362154_88362210	0.0544633	Zic4	ENSMUST00000034085.7|Brd7|ENSMUSG00000031660.7|bromodomain containing 7
mm10_v2_chrX_-_7740206_7740218	0.053404	Zic4	ENSMUST00000128289.1|Ccdc120|ENSMUSG00000031150.6|coiled-coil domain containing 120
mm10_v2_chr6_+_61180313_61180400	0.0496675	Zic4	ENSMUST00000126214.1|Ccser1|ENSMUSG00000039578.10|coiled-coil serine rich 1
mm10_v2_chr15_-_75909543_75909567	0.0493981	Zic4	ENSMUST00000123712.1|Eef1d|ENSMUSG00000055762.9|eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein) 	ENSMUST00000141475.1|Eef1d|ENSMUSG00000055762.9|eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein) 	ENSMUST00000144614.1|Eef1d|ENSMUSG00000055762.9|eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein)
mm10_v2_chr14_+_25980039_25980039	0.0453113	Zic4	ENSMUST00000173155.1|Duxbl1|ENSMUSG00000048502.8|double homeobox B-like 1
mm10_v2_chr7_+_98703091_98703137	0.0379847	Zic4	ENSMUST00000033009.9|Prkrir|ENSMUSG00000030753.9|protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor)
mm10_v2_chr7_-_126503408_126503477	0.0373763	Zic4	ENSMUST00000040202.8|Atxn2l|ENSMUSG00000032637.9|ataxin 2-like
mm10_v2_chr7_+_27653906_27653960	0.0340308	Zic4	ENSMUST00000008088.7|Ttc9b|ENSMUSG00000007944.7|tetratricopeptide repeat domain 9B
mm10_v2_chr12_-_31499541_31499616	0.0248955	Zic4	ENSMUST00000101499.3|Cbll1|ENSMUSG00000020659.9|Casitas B-lineage lymphoma-like 1 	ENSMUST00000064240.6|Cbll1|ENSMUSG00000020659.9|Casitas B-lineage lymphoma-like 1 	ENSMUST00000085487.5|Cbll1|ENSMUSG00000020659.9|Casitas B-lineage lymphoma-like 1
mm10_v2_chr19_+_5447692_5447711	0.0217822	Zic4	ENSMUST00000025850.5|Fosl1|ENSMUSG00000024912.5|fos-like antigen 1
mm10_v2_chr11_+_97663366_97663414	0.0146422	Zic4	ENSMUST00000044730.5|Mllt6|ENSMUSG00000038437.5|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 6
mm10_v2_chr11_-_78497458_78497539	0.0123549	Zic4	ENSMUST00000108287.3|Sarm1|ENSMUSG00000050132.7|sterile alpha and HEAT/Armadillo motif containing 1
mm10_v2_chr10_-_127030789_127030812	0.00548484	Zic4	ENSMUST00000120547.1|Tsfm|ENSMUSG00000040521.5|Ts translation elongation factor, mitochondrial 	ENSMUST00000152054.1|Tsfm|ENSMUSG00000040521.5|Ts translation elongation factor, mitochondrial
