mm10_v2_chr4_+_118961578_118961612	5.56426	Emx1_Emx2	ENSMUST00000058651.4|Lao1|ENSMUSG00000024903.10|L-amino acid oxidase 1
mm10_v2_chr3_+_127633134_127633140	5.02713	Emx1_Emx2	ENSMUST00000029587.7|Neurog2|ENSMUSG00000027967.7|neurogenin 2
mm10_v2_chr7_-_103827922_103828096	4.89002	Emx1_Emx2	ENSMUST00000023934.6|Hbb-bs|ENSMUSG00000052305.5|hemoglobin, beta adult s chain 	ENSMUST00000153218.1|Hbb-bs|ENSMUSG00000052305.5|hemoglobin, beta adult s chain
mm10_v2_chr4_-_82505274_82505358	4.3242	Emx1_Emx2	ENSMUST00000050872.8|Nfib|ENSMUSG00000008575.11|nuclear factor I/B 	ENSMUST00000064770.2|Nfib|ENSMUSG00000008575.11|nuclear factor I/B
mm10_v2_chr4_-_82505749_82505802	4.15583	Emx1_Emx2	ENSMUST00000107245.2|Nfib|ENSMUSG00000008575.11|nuclear factor I/B 	ENSMUST00000107246.1|Nfib|ENSMUSG00000008575.11|nuclear factor I/B
mm10_v2_chr4_-_82505707_82505739	3.55124	Emx1_Emx2	ENSMUST00000107248.1|Nfib|ENSMUSG00000008575.11|nuclear factor I/B 	ENSMUST00000107247.1|Nfib|ENSMUSG00000008575.11|nuclear factor I/B
mm10_v2_chr17_-_36032682_36032855	3.22946	Emx1_Emx2	ENSMUST00000102678.4|H2-T23|ENSMUSG00000067212.8|histocompatibility 2, T region locus 23
mm10_v2_chr2_-_160619971_160619971	2.94477	Emx1_Emx2	ENSMUST00000109473.1|Gm14221|ENSMUSG00000078956.2|predicted gene 14221
mm10_v2_chrX_+_106920618_106920632	2.2381	Emx1_Emx2	ENSMUST00000060576.7|Lpar4|ENSMUSG00000049929.7|lysophosphatidic acid receptor 4
mm10_v2_chr8_-_21906412_21906437	2.05456	Emx1_Emx2	ENSMUST00000051965.4|Defb11|ENSMUSG00000045337.4|defensin beta 11
mm10_v2_chr13_-_97747373_97747384	2.02624	Emx1_Emx2	ENSMUST00000123535.1|5330416C01Rik|ENSMUSG00000054944.7|RIKEN cDNA 5330416C01 gene
mm10_v2_chr17_-_48432723_48432741	2.02342	Emx1_Emx2	ENSMUST00000046549.3|Apobec2|ENSMUSG00000040694.3|apolipoprotein B mRNA editing enzyme, catalytic polypeptide 2
mm10_v2_chr3_-_49757257_49757316	1.96934	Emx1_Emx2	ENSMUST00000035931.7|Pcdh18|ENSMUSG00000037892.8|protocadherin 18
mm10_v2_chr18_+_57142782_57142796	1.96383	Emx1_Emx2	ENSMUST00000139892.1|Megf10|ENSMUSG00000024593.9|multiple EGF-like-domains 10
mm10_v2_chr13_-_97747399_97747414	1.96005	Emx1_Emx2	ENSMUST00000144993.1|5330416C01Rik|ENSMUSG00000054944.7|RIKEN cDNA 5330416C01 gene
mm10_v2_chr12_-_98577940_98578046	1.82746	Emx1_Emx2	ENSMUST00000110113.1|Kcnk10|ENSMUSG00000033854.9|potassium channel, subfamily K, member 10
mm10_v2_chr14_+_26259109_26259109	1.81725	Emx1_Emx2	ENSMUST00000174494.1|Duxbl3|ENSMUSG00000072672.4|double homeobox B-like 3
mm10_v2_chr6_+_42245907_42245977	1.79244	Emx1_Emx2	ENSMUST00000031897.5|Gstk1|ENSMUSG00000029864.5|glutathione S-transferase kappa 1
mm10_v2_chr7_+_126781483_126781483	1.76583	Emx1_Emx2	ENSMUST00000172352.1|Tbx6|ENSMUSG00000030699.10|T-box 6 	ENSMUST00000094037.4|Tbx6|ENSMUSG00000030699.10|T-box 6
mm10_v2_chr3_+_90541146_90541173	1.65834	Emx1_Emx2	ENSMUST00000107333.1|S100a16|ENSMUSG00000074457.4|S100 calcium binding protein A16 	ENSMUST00000107331.1|S100a16|ENSMUSG00000074457.4|S100 calcium binding protein A16 	ENSMUST00000098910.2|S100a16|ENSMUSG00000074457.4|S100 calcium binding protein A16
mm10_v2_chr5_-_28210022_28210034	1.6559	Emx1_Emx2	ENSMUST00000118882.1|Cnpy1|ENSMUSG00000044681.12|canopy 1 homolog (zebrafish)
mm10_v2_chr17_-_31636631_31636790	1.4695	Emx1_Emx2	ENSMUST00000135425.1|Cbs|ENSMUSG00000024039.8|cystathionine beta-synthase 	ENSMUST00000151718.1|Cbs|ENSMUSG00000024039.8|cystathionine beta-synthase 	ENSMUST00000155814.1|Cbs|ENSMUSG00000024039.8|cystathionine beta-synthase
mm10_v2_chr10_+_90071095_90071117	1.46474	Emx1_Emx2	ENSMUST00000183109.1|Anks1b|ENSMUSG00000058589.8|ankyrin repeat and sterile alpha motif domain containing 1B
mm10_v2_chr14_+_26119811_26119811	1.46279	Emx1_Emx2	ENSMUST00000173617.1|Duxbl2|ENSMUSG00000072675.6|doubl homeobox B-like 2
mm10_v2_chr1_-_144177259_144177372	1.33093	Emx1_Emx2	ENSMUST00000111941.1|Rgs13|ENSMUSG00000051079.2|regulator of G-protein signaling 13 	ENSMUST00000052375.1|Rgs13|ENSMUSG00000051079.2|regulator of G-protein signaling 13
mm10_v2_chr10_-_42583628_42583639	1.28313	Emx1_Emx2	ENSMUST00000019938.4|Nr2e1|ENSMUSG00000019803.5|nuclear receptor subfamily 2, group E, member 1
mm10_v2_chr8_-_4779513_4779591	1.24953	Emx1_Emx2	ENSMUST00000022945.7|Shcbp1|ENSMUSG00000022322.7|Shc SH2-domain binding protein 1
mm10_v2_chr3_-_63851251_63851359	1.24693	Emx1_Emx2	ENSMUST00000162269.2|Plch1|ENSMUSG00000036834.10|phospholipase C, eta 1 	ENSMUST00000159676.2|Plch1|ENSMUSG00000036834.10|phospholipase C, eta 1 	ENSMUST00000175947.1|Plch1|ENSMUSG00000036834.10|phospholipase C, eta 1
mm10_v2_chr16_-_63864114_63864182	1.22168	Emx1_Emx2	ENSMUST00000064405.6|Epha3|ENSMUSG00000052504.6|Eph receptor A3
mm10_v2_chr6_-_57535422_57535447	1.21926	Emx1_Emx2	ENSMUST00000042766.3|Ppm1k|ENSMUSG00000037826.3|protein phosphatase 1K (PP2C domain containing)
mm10_v2_chr9_+_65890237_65890343	1.21276	Emx1_Emx2	ENSMUST00000045802.6|2810417H13Rik|ENSMUSG00000040204.6|RIKEN cDNA 2810417H13 gene
mm10_v2_chr14_+_46832127_46832151	1.19076	Emx1_Emx2	ENSMUST00000068532.8|Cgrrf1|ENSMUSG00000055128.8|cell growth regulator with ring finger domain 1
mm10_v2_chr10_+_79996479_79996505	1.19034	Emx1_Emx2	ENSMUST00000132517.1|Abca7|ENSMUSG00000035722.9|ATP-binding cassette, sub-family A (ABC1), member 7
mm10_v2_chr11_+_109543694_109543754	1.18427	Emx1_Emx2	ENSMUST00000106696.1|Arsg|ENSMUSG00000020604.7|arylsulfatase G
mm10_v2_chr13_+_23555023_23555039	1.18071	Emx1_Emx2	ENSMUST00000045301.6|Hist1h1d|ENSMUSG00000052565.5|histone cluster 1, H1d
mm10_v2_chr14_+_26119173_26119173	1.17114	Emx1_Emx2	ENSMUST00000174564.1|Duxbl2|ENSMUSG00000072675.6|doubl homeobox B-like 2
mm10_v2_chr14_+_26258786_26258786	1.17114	Emx1_Emx2	ENSMUST00000172517.1|Duxbl3|ENSMUSG00000072672.4|double homeobox B-like 3
mm10_v2_chr14_+_25979401_25979401	1.16107	Emx1_Emx2	ENSMUST00000173580.1|Duxbl1|ENSMUSG00000048502.8|double homeobox B-like 1
mm10_v2_chr6_-_144209558_144209647	1.14531	Emx1_Emx2	ENSMUST00000111749.1|Sox5|ENSMUSG00000041540.10|SRY-box containing gene 5 	ENSMUST00000170367.2|Sox5|ENSMUSG00000041540.10|SRY-box containing gene 5
mm10_v2_chr6_-_144209448_144209469	1.14395	Emx1_Emx2	ENSMUST00000077160.5|Sox5|ENSMUSG00000041540.10|SRY-box containing gene 5
mm10_v2_chr6_-_144209471_144209487	1.11286	Emx1_Emx2	ENSMUST00000038815.7|Sox5|ENSMUSG00000041540.10|SRY-box containing gene 5
mm10_v2_chr12_-_90969768_90969790	1.08036	Emx1_Emx2	ENSMUST00000181184.1|4930544I03Rik|ENSMUSG00000097071.1|RIKEN cDNA 4930544I03 gene
mm10_v2_chr7_-_115846080_115846112	1.07251	Emx1_Emx2	ENSMUST00000166207.1|Sox6|ENSMUSG00000051910.7|SRY-box containing gene 6
mm10_v2_chr6_-_101377342_101377388	1.06933	Emx1_Emx2	ENSMUST00000151175.1|Pdzrn3|ENSMUSG00000035357.10|PDZ domain containing RING finger 3
mm10_v2_chr17_+_40115358_40115358	1.04618	Emx1_Emx2	ENSMUST00000061746.7|Gm7148|ENSMUSG00000045842.7|predicted gene 7148
mm10_v2_chr14_+_25980039_25980039	1.04468	Emx1_Emx2	ENSMUST00000173155.1|Duxbl1|ENSMUSG00000048502.8|double homeobox B-like 1
mm10_v2_chr4_+_110397661_110397708	1.01705	Emx1_Emx2	ENSMUST00000106589.2|Agbl4|ENSMUSG00000061298.8|ATP/GTP binding protein-like 4 	ENSMUST00000106587.2|Agbl4|ENSMUSG00000061298.8|ATP/GTP binding protein-like 4 	ENSMUST00000106591.1|Agbl4|ENSMUSG00000061298.8|ATP/GTP binding protein-like 4 	ENSMUST00000106592.1|Agbl4|ENSMUSG00000061298.8|ATP/GTP binding protein-like 4
mm10_v2_chr12_-_84617326_84617466	1.00609	Emx1_Emx2	ENSMUST00000021666.4|Abcd4|ENSMUSG00000021240.5|ATP-binding cassette, sub-family D (ALD), member 4
mm10_v2_chr2_-_67194695_67194736	0.99283	Emx1_Emx2	ENSMUST00000147939.1|Gm13598|ENSMUSG00000086908.1|predicted gene 13598
mm10_v2_chr18_-_15403680_15403687	0.987205	Emx1_Emx2	ENSMUST00000079081.6|Aqp4|ENSMUSG00000024411.9|aquaporin 4
mm10_v2_chr10_-_88605017_88605152	0.94847	Emx1_Emx2	ENSMUST00000119185.1|Mybpc1|ENSMUSG00000020061.11|myosin binding protein C, slow-type 	ENSMUST00000121629.1|Mybpc1|ENSMUSG00000020061.11|myosin binding protein C, slow-type
mm10_v2_chr8_+_69300776_69300776	0.904489	Emx1_Emx2	ENSMUST00000078257.6|D130040H23Rik|ENSMUSG00000079038.2|RIKEN cDNA D130040H23 gene
mm10_v2_chr17_+_45734506_45734630	0.863995	Emx1_Emx2	ENSMUST00000180558.1|F630040K05Rik|ENSMUSG00000097727.1|RIKEN cDNA F630040K05 gene
mm10_v2_chr13_+_23763660_23763674	0.845945	Emx1_Emx2	ENSMUST00000055770.1|Hist1h1a|ENSMUSG00000049539.1|histone cluster 1, H1a
mm10_v2_chr4_+_110397764_110397808	0.821644	Emx1_Emx2	ENSMUST00000097920.2|Agbl4|ENSMUSG00000061298.8|ATP/GTP binding protein-like 4 	ENSMUST00000080744.6|Agbl4|ENSMUSG00000061298.8|ATP/GTP binding protein-like 4
mm10_v2_chrX_-_102505359_102505412	0.775513	Emx1_Emx2	ENSMUST00000087916.4|Hdac8|ENSMUSG00000067567.6|histone deacetylase 8
mm10_v2_chr11_+_97029925_97029997	0.774757	Emx1_Emx2	ENSMUST00000021249.4|Scrn2|ENSMUSG00000020877.5|secernin 2
mm10_v2_chr16_-_44016387_44016436	0.765273	Emx1_Emx2	ENSMUST00000036174.3|Gramd1c|ENSMUSG00000036292.7|GRAM domain containing 1C
mm10_v2_chr12_-_54999102_54999142	0.764468	Emx1_Emx2	ENSMUST00000173529.1|Baz1a|ENSMUSG00000035021.7|bromodomain adjacent to zinc finger domain 1A
mm10_v2_chr14_+_53324632_53324632	0.757961	Emx1_Emx2	ENSMUST00000178100.1|Trav7n-6|ENSMUSG00000095415.1|T cell receptor alpha variable 7N-6
mm10_v2_chr7_-_5413145_5413145	0.729976	Emx1_Emx2	ENSMUST00000108569.2|Vmn1r58|ENSMUSG00000078808.4|vomeronasal 1 receptor 58
mm10_v2_chr15_-_103366763_103366798	0.683254	Emx1_Emx2	ENSMUST00000023128.6|Itga5|ENSMUSG00000000555.6|integrin alpha 5 (fibronectin receptor alpha)
mm10_v2_chr14_+_55560010_55560037	0.66031	Emx1_Emx2	ENSMUST00000147981.1|Dcaf11|ENSMUSG00000022214.8|DDB1 and CUL4 associated factor 11 	ENSMUST00000133256.1|Dcaf11|ENSMUSG00000022214.8|DDB1 and CUL4 associated factor 11
mm10_v2_chr2_+_110597298_110597316	0.656118	Emx1_Emx2	ENSMUST00000045972.6|Slc5a12|ENSMUSG00000041644.8|solute carrier family 5 (sodium/glucose cotransporter), member 12 	ENSMUST00000111026.2|Slc5a12|ENSMUSG00000041644.8|solute carrier family 5 (sodium/glucose cotransporter), member 12
mm10_v2_chr2_+_175469985_175470063	0.635163	Emx1_Emx2	ENSMUST00000109042.3|Gm8923|ENSMUSG00000078896.5|predicted gene 8923 	ENSMUST00000109002.2|Gm8923|ENSMUSG00000078896.5|predicted gene 8923 	ENSMUST00000109043.2|Gm8923|ENSMUSG00000078896.5|predicted gene 8923 	ENSMUST00000143490.1|Gm8923|ENSMUSG00000078896.5|predicted gene 8923
mm10_v2_chr3_+_88716838_88716883	0.633242	Emx1_Emx2	ENSMUST00000029692.8|Rit1|ENSMUSG00000028057.8|Ras-like without CAAX 1 	ENSMUST00000171645.1|Rit1|ENSMUSG00000028057.8|Ras-like without CAAX 1
mm10_v2_chr3_+_88716884_88716906	0.619754	Emx1_Emx2	ENSMUST00000172252.1|Rit1|ENSMUSG00000028057.8|Ras-like without CAAX 1
mm10_v2_chrM_+_11734_11757	0.616639	Emx1_Emx2	ENSMUST00000082418.1|mt-Nd5|ENSMUSG00000064367.1|mitochondrially encoded NADH dehydrogenase 5
mm10_v2_chr2_-_73580288_73580353	0.596326	Emx1_Emx2	ENSMUST00000028515.3|Chrna1|ENSMUSG00000027107.3|cholinergic receptor, nicotinic, alpha polypeptide 1 (muscle)
mm10_v2_chr3_+_32708546_32708738	0.591965	Emx1_Emx2	ENSMUST00000029214.7|Actl6a|ENSMUSG00000027671.8|actin-like 6A
mm10_v2_chr12_-_98259416_98259459	0.590782	Emx1_Emx2	ENSMUST00000021390.7|Galc|ENSMUSG00000021003.9|galactosylceramidase
mm10_v2_chrX_+_106027259_106027293	0.590316	Emx1_Emx2	ENSMUST00000113557.1|Atp7a|ENSMUSG00000033792.6|ATPase, Cu++ transporting, alpha polypeptide
mm10_v2_chr2_-_175703646_175703646	0.587531	Emx1_Emx2	ENSMUST00000109027.2|Gm4245|ENSMUSG00000095545.1|predicted gene 4245 	ENSMUST00000179061.1|Gm4245|ENSMUSG00000095545.1|predicted gene 4245 	ENSMUST00000131041.1|Gm4245|ENSMUSG00000095545.1|predicted gene 4245
mm10_v2_chr2_+_175372436_175372492	0.587088	Emx1_Emx2	ENSMUST00000131676.1|Gm4723|ENSMUSG00000078898.3|predicted gene 4723 	ENSMUST00000109048.2|Gm4723|ENSMUSG00000078898.3|predicted gene 4723 	ENSMUST00000109047.2|Gm4723|ENSMUSG00000078898.3|predicted gene 4723
mm10_v2_chrX_+_106027300_106027323	0.585159	Emx1_Emx2	ENSMUST00000055941.6|Atp7a|ENSMUSG00000033792.6|ATPase, Cu++ transporting, alpha polypeptide
mm10_v2_chr10_-_86011833_86011896	0.567927	Emx1_Emx2	ENSMUST00000105304.1|Bpifc|ENSMUSG00000050108.6|BPI fold containing family C 	ENSMUST00000061699.5|Bpifc|ENSMUSG00000050108.6|BPI fold containing family C
mm10_v2_chr7_-_142661858_142661880	0.557197	Emx1_Emx2	ENSMUST00000145896.2|Igf2|ENSMUSG00000048583.10|insulin-like growth factor 2
mm10_v2_chr10_-_25297055_25297101	0.554913	Emx1_Emx2	ENSMUST00000177124.1|Akap7|ENSMUSG00000039166.9|A kinase (PRKA) anchor protein 7
mm10_v2_chr7_+_39588931_39588931	0.552883	Emx1_Emx2	ENSMUST00000178791.1|Gm2058|ENSMUSG00000074903.4|predicted gene 2058 	ENSMUST00000098511.3|Gm2058|ENSMUSG00000074903.4|predicted gene 2058
mm10_v2_chr9_+_78191966_78191999	0.548106	Emx1_Emx2	ENSMUST00000034903.5|Gsta4|ENSMUSG00000032348.5|glutathione S-transferase, alpha 4
mm10_v2_chr2_+_36230426_36230491	0.52069	Emx1_Emx2	ENSMUST00000062069.5|Ptgs1|ENSMUSG00000047250.7|prostaglandin-endoperoxide synthase 1
mm10_v2_chr7_-_84679346_84679401	0.498101	Emx1_Emx2	ENSMUST00000069537.2|Zfand6|ENSMUSG00000030629.8|zinc finger, AN1-type domain 6 	ENSMUST00000178385.1|Zfand6|ENSMUSG00000030629.8|zinc finger, AN1-type domain 6
mm10_v2_chr1_-_133610253_133610294	0.477053	Emx1_Emx2	ENSMUST00000166915.1|Snrpe|ENSMUSG00000090553.2|small nuclear ribonucleoprotein E
mm10_v2_chr4_-_155645408_155645408	0.460299	Emx1_Emx2	ENSMUST00000115821.2|Gm10563|ENSMUSG00000073682.3|predicted gene 10563
mm10_v2_chr17_-_45599603_45599623	0.435658	Emx1_Emx2	ENSMUST00000171847.1|Slc29a1|ENSMUSG00000023942.9|solute carrier family 29 (nucleoside transporters), member 1 	ENSMUST00000166633.1|Slc29a1|ENSMUSG00000023942.9|solute carrier family 29 (nucleoside transporters), member 1 	ENSMUST00000169729.1|Slc29a1|ENSMUSG00000023942.9|solute carrier family 29 (nucleoside transporters), member 1
mm10_v2_chr10_-_76110956_76110962	0.423401	Emx1_Emx2	ENSMUST00000120757.1|Slc5a4b|ENSMUSG00000020226.9|solute carrier family 5 (neutral amino acid transporters, system A), member 4b
mm10_v2_chrX_-_74393003_74393072	0.419426	Emx1_Emx2	ENSMUST00000015427.6|Fam3a|ENSMUSG00000031399.9|family with sequence similarity 3, member A
mm10_v2_chr2_-_28583189_28583230	0.405573	Emx1_Emx2	ENSMUST00000113889.2|Gtf3c5|ENSMUSG00000026816.8|general transcription factor IIIC, polypeptide 5
mm10_v2_chr13_-_4609122_4609189	0.395589	Emx1_Emx2	ENSMUST00000110691.3|Akr1e1|ENSMUSG00000045410.11|aldo-keto reductase family 1, member E1 	ENSMUST00000091848.5|Akr1e1|ENSMUSG00000045410.11|aldo-keto reductase family 1, member E1
mm10_v2_chr3_+_137341103_137341146	0.388243	Emx1_Emx2	ENSMUST00000119475.1|Emcn|ENSMUSG00000054690.11|endomucin
mm10_v2_chr3_-_130730375_130730398	0.37374	Emx1_Emx2	ENSMUST00000079085.6|Rpl34|ENSMUSG00000062006.6|ribosomal protein L34
mm10_v2_chr16_-_97170707_97170759	0.372838	Emx1_Emx2	ENSMUST00000056102.7|Dscam|ENSMUSG00000050272.9|Down syndrome cell adhesion molecule
mm10_v2_chrX_+_8271133_8271179	0.362112	Emx1_Emx2	ENSMUST00000127103.1|Slc38a5|ENSMUSG00000031170.8|solute carrier family 38, member 5 	ENSMUST00000115591.1|Slc38a5|ENSMUSG00000031170.8|solute carrier family 38, member 5
mm10_v2_chr2_-_28583239_28583279	0.361358	Emx1_Emx2	ENSMUST00000028157.8|Gtf3c5|ENSMUSG00000026816.8|general transcription factor IIIC, polypeptide 5
mm10_v2_chr4_-_86669492_86669560	0.359108	Emx1_Emx2	ENSMUST00000149700.1|Plin2|ENSMUSG00000028494.6|perilipin 2
mm10_v2_chr9_+_72958785_72958850	0.347929	Emx1_Emx2	ENSMUST00000098567.2|Dyx1c1|ENSMUSG00000092192.1|dyslexia susceptibility 1 candidate 1 homolog (human) 	ENSMUST00000034734.8|Dyx1c1|ENSMUSG00000092192.1|dyslexia susceptibility 1 candidate 1 homolog (human)
mm10_v2_chr16_-_59553970_59553970	0.344127	Emx1_Emx2	ENSMUST00000139989.1|Crybg3|ENSMUSG00000022723.9|beta-gamma crystallin domain containing 3
mm10_v2_chr2_+_144594054_144594083	0.341035	Emx1_Emx2	ENSMUST00000136628.1|Gm561|ENSMUSG00000074754.4|predicted gene 561
mm10_v2_chr10_+_20347788_20347859	0.338624	Emx1_Emx2	ENSMUST00000169712.1|Mtfr2|ENSMUSG00000019992.7|mitochondrial fission regulator 2
mm10_v2_chr14_+_58893465_58893506	0.33748	Emx1_Emx2	ENSMUST00000079960.1|Rpl13-ps3|ENSMUSG00000059835.1|ribosomal protein L13, pseudogene 3
mm10_v2_chr17_-_32822200_32822200	0.335174	Emx1_Emx2	ENSMUST00000179695.1|Zfp799|ENSMUSG00000095253.1|zinc finger protein 799
mm10_v2_chr3_-_146495115_146495139	0.329454	Emx1_Emx2	ENSMUST00000093951.2|Spata1|ENSMUSG00000028188.7|spermatogenesis associated 1
mm10_v2_chr13_-_106847267_106847267	0.325116	Emx1_Emx2	ENSMUST00000057427.4|Lrrc70|ENSMUSG00000078933.1|leucine rich repeat containing 70
mm10_v2_chr5_-_65428354_65428374	0.325028	Emx1_Emx2	ENSMUST00000131263.1|Ugdh|ENSMUSG00000029201.8|UDP-glucose dehydrogenase
mm10_v2_chr2_+_119047129_119047159	0.302585	Emx1_Emx2	ENSMUST00000153300.1|Casc5|ENSMUSG00000027326.7|cancer susceptibility candidate 5 	ENSMUST00000028799.5|Casc5|ENSMUSG00000027326.7|cancer susceptibility candidate 5
mm10_v2_chr7_-_19573343_19573377	0.300241	Emx1_Emx2	ENSMUST00000051364.3|Gemin7|ENSMUSG00000044709.5|gem (nuclear organelle) associated protein 7
mm10_v2_chr16_+_21794320_21794381	0.299169	Emx1_Emx2	ENSMUST00000181780.1|1300002E11Rik|ENSMUSG00000097290.1|RIKEN cDNA 1300002E11 gene 	ENSMUST00000181960.1|1300002E11Rik|ENSMUSG00000097290.1|RIKEN cDNA 1300002E11 gene
mm10_v2_chr13_+_94976435_94976452	0.284881	Emx1_Emx2	ENSMUST00000160409.1|Wdr41|ENSMUSG00000042015.10|WD repeat domain 41 	ENSMUST00000159647.1|Wdr41|ENSMUSG00000042015.10|WD repeat domain 41 	ENSMUST00000167155.1|Wdr41|ENSMUSG00000042015.10|WD repeat domain 41
mm10_v2_chr12_+_80463095_80463179	0.271854	Emx1_Emx2	ENSMUST00000038185.8|Exd2|ENSMUSG00000032705.8|exonuclease 3'-5' domain containing 2
mm10_v2_chr4_-_11254248_11254266	0.253045	Emx1_Emx2	ENSMUST00000044616.3|Ints8|ENSMUSG00000040738.4|integrator complex subunit 8 	ENSMUST00000108319.2|Ints8|ENSMUSG00000040738.4|integrator complex subunit 8 	ENSMUST00000108318.2|Ints8|ENSMUSG00000040738.4|integrator complex subunit 8
mm10_v2_chr10_+_128322443_128322476	0.23487	Emx1_Emx2	ENSMUST00000026446.2|Cnpy2|ENSMUSG00000025381.2|canopy 2 homolog (zebrafish)
mm10_v2_chr10_-_127030789_127030812	0.225201	Emx1_Emx2	ENSMUST00000120547.1|Tsfm|ENSMUSG00000040521.5|Ts translation elongation factor, mitochondrial 	ENSMUST00000152054.1|Tsfm|ENSMUSG00000040521.5|Ts translation elongation factor, mitochondrial
mm10_v2_chrX_-_102157065_102157096	0.221851	Emx1_Emx2	ENSMUST00000056904.2|Ercc6l|ENSMUSG00000051220.2|excision repair cross-complementing rodent repair deficiency complementation group 6 like
mm10_v2_chr17_+_14943184_14943281	0.218557	Emx1_Emx2	ENSMUST00000052691.8|1600012H06Rik|ENSMUSG00000050088.9|RIKEN cDNA 1600012H06 gene 	ENSMUST00000164837.2|1600012H06Rik|ENSMUSG00000050088.9|RIKEN cDNA 1600012H06 gene 	ENSMUST00000174004.1|1600012H06Rik|ENSMUSG00000050088.9|RIKEN cDNA 1600012H06 gene
mm10_v2_chr3_+_137341067_137341095	0.215901	Emx1_Emx2	ENSMUST00000122064.1|Emcn|ENSMUSG00000054690.11|endomucin
mm10_v2_chr7_-_101845300_101845339	0.208562	Emx1_Emx2	ENSMUST00000094141.5|Folr2|ENSMUSG00000032725.9|folate receptor 2 (fetal)
mm10_v2_chr2_+_69789647_69789749	0.207518	Emx1_Emx2	ENSMUST00000112266.1|Phospho2|ENSMUSG00000027088.4|phosphatase, orphan 2
mm10_v2_chr7_-_42706369_42706369	0.205874	Emx1_Emx2	ENSMUST00000180131.1|Gm17067|ENSMUSG00000095144.1|predicted gene 17067
mm10_v2_chr7_-_38019505_38019552	0.200615	Emx1_Emx2	ENSMUST00000085513.4|Uri1|ENSMUSG00000030421.8|URI1, prefoldin-like chaperone
mm10_v2_chr9_-_15301555_15301607	0.193609	Emx1_Emx2	ENSMUST00000034414.8|4931406C07Rik|ENSMUSG00000031938.8|RIKEN cDNA 4931406C07 gene
mm10_v2_chr12_-_12940600_12940616	0.190003	Emx1_Emx2	ENSMUST00000130990.1|Mycn|ENSMUSG00000037169.8|v-myc myelocytomatosis viral related oncogene, neuroblastoma derived (avian)
mm10_v2_chr10_-_49783259_49783582	0.18613	Emx1_Emx2	ENSMUST00000105484.3|Grik2|ENSMUSG00000056073.8|glutamate receptor, ionotropic, kainate 2 (beta 2) 	ENSMUST00000105486.1|Grik2|ENSMUSG00000056073.8|glutamate receptor, ionotropic, kainate 2 (beta 2) 	ENSMUST00000079751.2|Grik2|ENSMUSG00000056073.8|glutamate receptor, ionotropic, kainate 2 (beta 2) 	ENSMUST00000105485.1|Grik2|ENSMUSG00000056073.8|glutamate receptor, ionotropic, kainate 2 (beta 2)
mm10_v2_chr17_+_46772635_46772635	0.176383	Emx1_Emx2	ENSMUST00000071430.5|2310039H08Rik|ENSMUSG00000062619.5|RIKEN cDNA 2310039H08 gene
mm10_v2_chr18_-_66002612_66002637	0.168563	Emx1_Emx2	ENSMUST00000120461.1|Lman1|ENSMUSG00000041891.9|lectin, mannose-binding, 1 	ENSMUST00000048260.7|Lman1|ENSMUSG00000041891.9|lectin, mannose-binding, 1
mm10_v2_chr9_-_124304718_124304718	0.168371	Emx1_Emx2	ENSMUST00000071300.6|2010315B03Rik|ENSMUSG00000074829.4|RIKEN cDNA 2010315B03 gene
mm10_v2_chr17_-_56036546_56036647	0.157192	Emx1_Emx2	ENSMUST00000003268.9|Sh3gl1|ENSMUSG00000003200.9|SH3-domain GRB2-like 1
mm10_v2_chr8_+_34054622_34054647	0.156455	Emx1_Emx2	ENSMUST00000149618.1|Gm9951|ENSMUSG00000054618.8|predicted gene 9951
mm10_v2_chr4_-_64276595_64276604	0.14899	Emx1_Emx2	ENSMUST00000141162.1|Gm11217|ENSMUSG00000085032.1|predicted gene 11217
mm10_v2_chr6_-_145047636_145047661	0.144067	Emx1_Emx2	ENSMUST00000149769.1|Bcat1|ENSMUSG00000030268.11|branched chain aminotransferase 1, cytosolic
mm10_v2_chr2_-_119662756_119662835	0.142907	Emx1_Emx2	ENSMUST00000028768.1|Ndufaf1|ENSMUSG00000027305.3|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 1 	ENSMUST00000110801.1|Ndufaf1|ENSMUSG00000027305.3|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 1 	ENSMUST00000110802.1|Ndufaf1|ENSMUSG00000027305.3|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 1
mm10_v2_chrX_-_160138375_160138435	0.136575	Emx1_Emx2	ENSMUST00000033662.8|Pdha1|ENSMUSG00000031299.10|pyruvate dehydrogenase E1 alpha 1
mm10_v2_chr12_+_36314160_36314171	0.130155	Emx1_Emx2	ENSMUST00000041407.5|Sostdc1|ENSMUSG00000036169.5|sclerostin domain containing 1
mm10_v2_chr15_+_85510812_85510812	0.127227	Emx1_Emx2	ENSMUST00000079690.2|Gm4825|ENSMUSG00000063548.2|predicted pseudogene 4825
mm10_v2_chr7_-_125491397_125491413	0.123332	Emx1_Emx2	ENSMUST00000138616.1|Nsmce1|ENSMUSG00000030750.7|non-SMC element 1 homolog (S. cerevisiae)
mm10_v2_chr14_-_18893376_18893420	0.120735	Emx1_Emx2	ENSMUST00000151926.1|Ube2e2|ENSMUSG00000058317.5|ubiquitin-conjugating enzyme E2E 2
mm10_v2_chrX_+_159303266_159303281	0.115906	Emx1_Emx2	ENSMUST00000112491.1|Rps6ka3|ENSMUSG00000031309.9|ribosomal protein S6 kinase polypeptide 3
mm10_v2_chr2_-_155930018_155930066	0.114093	Emx1_Emx2	ENSMUST00000152766.1|Uqcc1|ENSMUSG00000005882.12|ubiquinol-cytochrome c reductase complex assembly factor 1 	ENSMUST00000139232.1|Uqcc1|ENSMUSG00000005882.12|ubiquinol-cytochrome c reductase complex assembly factor 1 	ENSMUST00000109632.1|Uqcc1|ENSMUSG00000005882.12|ubiquinol-cytochrome c reductase complex assembly factor 1 	ENSMUST00000006036.6|Uqcc1|ENSMUSG00000005882.12|ubiquinol-cytochrome c reductase complex assembly factor 1 	ENSMUST00000142655.1|Uqcc1|ENSMUSG00000005882.12|ubiquinol-cytochrome c reductase complex assembly factor 1 	ENSMUST00000159238.1|Uqcc1|ENSMUSG00000005882.12|ubiquinol-cytochrome c reductase complex assembly factor 1
mm10_v2_chr14_+_118137101_118137178	0.113891	Emx1_Emx2	ENSMUST00000022728.2|Gpr180|ENSMUSG00000022131.2|G protein-coupled receptor 180
mm10_v2_chr3_-_37125943_37125969	0.105404	Emx1_Emx2	ENSMUST00000029275.5|Il2|ENSMUSG00000027720.7|interleukin 2
mm10_v2_chr13_-_23934156_23934225	0.103912	Emx1_Emx2	ENSMUST00000052776.2|Hist1h2ba|ENSMUSG00000050799.2|histone cluster 1, H2ba
mm10_v2_chr12_-_56345862_56345894	0.0992798	Emx1_Emx2	ENSMUST00000021416.7|Mbip|ENSMUSG00000021028.7|MAP3K12 binding inhibitory protein 1
mm10_v2_chr3_+_121531603_121531634	0.0982124	Emx1_Emx2	ENSMUST00000180804.1|A530020G20Rik|ENSMUSG00000097124.1|RIKEN cDNA A530020G20 gene
mm10_v2_chr7_+_126976338_126976400	0.0829412	Emx1_Emx2	ENSMUST00000032920.3|Cdipt|ENSMUSG00000030682.3|CDP-diacylglycerol--inositol 3-phosphatidyltransferase (phosphatidylinositol synthase)
mm10_v2_chr8_-_8690493_8690538	0.0703323	Emx1_Emx2	ENSMUST00000048545.8|Arglu1|ENSMUSG00000040459.10|arginine and glutamate rich 1
mm10_v2_chr6_+_66896480_66896549	0.0698718	Emx1_Emx2	ENSMUST00000114222.1|Gng12|ENSMUSG00000036402.7|guanine nucleotide binding protein (G protein), gamma 12
mm10_v2_chr2_-_34826071_34826087	0.0687414	Emx1_Emx2	ENSMUST00000113077.1|Fbxw2|ENSMUSG00000035949.9|F-box and WD-40 domain protein 2 	ENSMUST00000028220.3|Fbxw2|ENSMUSG00000035949.9|F-box and WD-40 domain protein 2
mm10_v2_chr12_-_87444017_87444017	0.0607712	Emx1_Emx2	ENSMUST00000091090.4|2700073G19Rik|ENSMUSG00000021041.7|RIKEN cDNA 2700073G19 gene
mm10_v2_chr4_-_150914401_150914480	0.060769	Emx1_Emx2	ENSMUST00000105675.1|Park7|ENSMUSG00000028964.8|Parkinson disease (autosomal recessive, early onset) 7
mm10_v2_chr6_-_129533267_129533275	0.0516148	Emx1_Emx2	ENSMUST00000181594.1|1700101I11Rik|ENSMUSG00000097675.1|RIKEN cDNA 1700101I11 gene
mm10_v2_chr2_+_30171486_30171497	0.0489812	Emx1_Emx2	ENSMUST00000015481.5|Endog|ENSMUSG00000015337.5|endonuclease G
mm10_v2_chr8_+_45507768_45507818	0.0479973	Emx1_Emx2	ENSMUST00000067065.7|Sorbs2|ENSMUSG00000031626.10|sorbin and SH3 domain containing 2 	ENSMUST00000098788.3|Sorbs2|ENSMUSG00000031626.10|sorbin and SH3 domain containing 2 	ENSMUST00000067107.7|Sorbs2|ENSMUSG00000031626.10|sorbin and SH3 domain containing 2 	ENSMUST00000171337.2|Sorbs2|ENSMUSG00000031626.10|sorbin and SH3 domain containing 2 	ENSMUST00000138049.1|Sorbs2|ENSMUSG00000031626.10|sorbin and SH3 domain containing 2 	ENSMUST00000141039.1|Sorbs2|ENSMUSG00000031626.10|sorbin and SH3 domain containing 2
mm10_v2_chr17_-_24479034_24479083	0.0479315	Emx1_Emx2	ENSMUST00000179163.1|Mlst8|ENSMUSG00000024142.8|MTOR associated protein, LST8 homolog (S. cerevisiae) 	ENSMUST00000070888.6|Mlst8|ENSMUSG00000024142.8|MTOR associated protein, LST8 homolog (S. cerevisiae)
mm10_v2_chr17_-_47043039_47043039	0.0471966	Emx1_Emx2	ENSMUST00000075152.5|Gm4945|ENSMUSG00000062472.5|predicted gene 4945
mm10_v2_chr6_-_145047725_145047853	0.046212	Emx1_Emx2	ENSMUST00000123930.1|Bcat1|ENSMUSG00000030268.11|branched chain aminotransferase 1, cytosolic
mm10_v2_chr8_+_72219726_72219785	0.0399271	Emx1_Emx2	ENSMUST00000003123.8|Fam32a|ENSMUSG00000003039.8|family with sequence similarity 32, member A
mm10_v2_chr6_-_115037824_115037881	0.0366891	Emx1_Emx2	ENSMUST00000174848.1|Tamm41|ENSMUSG00000030316.7|TAM41, mitochondrial translocator assembly and maintenance protein, homolog (S. cerevisiae) 	ENSMUST00000032461.5|Tamm41|ENSMUSG00000030316.7|TAM41, mitochondrial translocator assembly and maintenance protein, homolog (S. cerevisiae)
mm10_v2_chr14_-_57133585_57133618	0.03621	Emx1_Emx2	ENSMUST00000039380.8|Gjb6|ENSMUSG00000040055.8|gap junction protein, beta 6
mm10_v2_chr11_+_72689997_72690015	0.0339623	Emx1_Emx2	ENSMUST00000155998.1|Ankfy1|ENSMUSG00000020790.8|ankyrin repeat and FYVE domain containing 1
mm10_v2_chr10_+_52022502_52022534	0.0252457	Emx1_Emx2	ENSMUST00000163017.1|Vgll2|ENSMUSG00000049641.6|vestigial like 2 homolog (Drosophila) 	ENSMUST00000058347.4|Vgll2|ENSMUSG00000049641.6|vestigial like 2 homolog (Drosophila)
mm10_v2_chr18_-_73754457_73754503	0.0240734	Emx1_Emx2	ENSMUST00000041138.2|Elac1|ENSMUSG00000036941.2|elaC homolog 1 (E. coli)
mm10_v2_chrX_+_106187100_106187179	0.0217343	Emx1_Emx2	ENSMUST00000081593.6|Pgk1|ENSMUSG00000062070.6|phosphoglycerate kinase 1
mm10_v2_chr3_+_106034661_106034692	0.0212017	Emx1_Emx2	ENSMUST00000170669.2|Gm4540|ENSMUSG00000092072.2|predicted gene 4540
mm10_v2_chr7_-_143649614_143649671	0.0199627	Emx1_Emx2	ENSMUST00000129476.1|Tnfrsf22|ENSMUSG00000010751.8|tumor necrosis factor receptor superfamily, member 22 	ENSMUST00000084396.3|Tnfrsf22|ENSMUSG00000010751.8|tumor necrosis factor receptor superfamily, member 22 	ENSMUST00000075588.6|Tnfrsf22|ENSMUSG00000010751.8|tumor necrosis factor receptor superfamily, member 22 	ENSMUST00000146692.1|Tnfrsf22|ENSMUSG00000010751.8|tumor necrosis factor receptor superfamily, member 22
mm10_v2_chr3_+_32436376_32436376	0.0174953	Emx1_Emx2	ENSMUST00000108242.1|Pik3ca|ENSMUSG00000027665.7|phosphatidylinositol 3-kinase, catalytic, alpha polypeptide
mm10_v2_chr5_+_135009152_135009317	0.0130646	Emx1_Emx2	ENSMUST00000111216.1|Abhd11|ENSMUSG00000040532.8|abhydrolase domain containing 11 	ENSMUST00000046999.8|Abhd11|ENSMUSG00000040532.8|abhydrolase domain containing 11
mm10_v2_chr9_-_15279860_15279877	0.00554838	Emx1_Emx2	ENSMUST00000034411.8|Med17|ENSMUSG00000031935.8|mediator complex subunit 17
mm10_v2_chr17_-_45686899_45686923	0.00414338	Emx1_Emx2	ENSMUST00000156254.1|Tmem63b|ENSMUSG00000036026.9|transmembrane protein 63b
mm10_v2_chr2_+_129100995_129101066	0.00348973	Emx1_Emx2	ENSMUST00000103205.4|Polr1b|ENSMUSG00000027395.9|polymerase (RNA) I polypeptide B 	ENSMUST00000028874.7|Polr1b|ENSMUSG00000027395.9|polymerase (RNA) I polypeptide B
