mm10_v2_chr9_+_15239045_15239155	23.5318	Hoxa1	ENSMUST00000034413.6|Vstm5|ENSMUSG00000031937.6|V-set and transmembrane domain containing 5
mm10_v2_chr7_+_73391160_73391296	16.3888	Hoxa1	ENSMUST00000128471.1|Rgma|ENSMUSG00000070509.9|RGM domain family, member A
mm10_v2_chr15_-_95528702_95528777	15.0176	Hoxa1	ENSMUST00000166170.1|Nell2|ENSMUSG00000022454.10|NEL-like 2
mm10_v2_chr2_+_158375638_158375721	11.1903	Hoxa1	ENSMUST00000109488.1|Snhg11|ENSMUSG00000044349.9|small nucleolar RNA host gene 11
mm10_v2_chr14_+_70077375_70077445	10.4375	Hoxa1	ENSMUST00000035908.1|Egr3|ENSMUSG00000033730.3|early growth response 3
mm10_v2_chr3_+_55782500_55782521	8.76225	Hoxa1	ENSMUST00000075422.4|Mab21l1|ENSMUSG00000056947.4|mab-21-like 1 (C. elegans)
mm10_v2_chr4_-_143299498_143299564	8.4358	Hoxa1	ENSMUST00000030317.7|Pdpn|ENSMUSG00000028583.8|podoplanin
mm10_v2_chr2_+_163225363_163225469	8.37592	Hoxa1	ENSMUST00000099110.3|Tox2|ENSMUSG00000074607.5|TOX high mobility group box family member 2 	ENSMUST00000165937.1|Tox2|ENSMUSG00000074607.5|TOX high mobility group box family member 2
mm10_v2_chr10_+_81628702_81628719	7.66415	Hoxa1	ENSMUST00000129622.1|Ankrd24|ENSMUSG00000054708.11|ankyrin repeat domain 24
mm10_v2_chr2_+_65845767_65845799	6.6683	Hoxa1	ENSMUST00000122912.1|Csrnp3|ENSMUSG00000044647.10|cysteine-serine-rich nuclear protein 3
mm10_v2_chr4_-_35845204_35845204	6.63089	Hoxa1	ENSMUST00000164772.1|Lingo2|ENSMUSG00000045083.8|leucine rich repeat and Ig domain containing 2 	ENSMUST00000065173.2|Lingo2|ENSMUSG00000045083.8|leucine rich repeat and Ig domain containing 2
mm10_v2_chr5_+_27261916_27261980	6.60386	Hoxa1	ENSMUST00000101471.3|Dpp6|ENSMUSG00000061576.9|dipeptidylpeptidase 6
mm10_v2_chr2_+_90885860_90885872	6.5547	Hoxa1	ENSMUST00000111466.2|C1qtnf4|ENSMUSG00000040794.5|C1q and tumor necrosis factor related protein 4
mm10_v2_chr2_+_65845833_65845850	6.53941	Hoxa1	ENSMUST00000053910.3|Csrnp3|ENSMUSG00000044647.10|cysteine-serine-rich nuclear protein 3
mm10_v2_chr15_+_98167806_98167873	6.05467	Hoxa1	ENSMUST00000031914.4|AI836003|ENSMUSG00000029875.4|expressed sequence AI836003
mm10_v2_chr15_+_74516196_74516219	5.98543	Hoxa1	ENSMUST00000042035.9|Bai1|ENSMUSG00000034730.10|brain-specific angiogenesis inhibitor 1
mm10_v2_chr14_+_66344369_66344380	5.86178	Hoxa1	ENSMUST00000118426.1|Stmn4|ENSMUSG00000022044.8|stathmin-like 4 	ENSMUST00000121955.1|Stmn4|ENSMUSG00000022044.8|stathmin-like 4 	ENSMUST00000120229.1|Stmn4|ENSMUSG00000022044.8|stathmin-like 4 	ENSMUST00000134440.1|Stmn4|ENSMUSG00000022044.8|stathmin-like 4
mm10_v2_chr17_+_70522083_70522145	5.74049	Hoxa1	ENSMUST00000148486.1|Dlgap1|ENSMUSG00000003279.10|discs, large (Drosophila) homolog-associated protein 1 	ENSMUST00000133717.1|Dlgap1|ENSMUSG00000003279.10|discs, large (Drosophila) homolog-associated protein 1
mm10_v2_chr2_+_152962485_152962510	5.62445	Hoxa1	ENSMUST00000099197.2|Ttll9|ENSMUSG00000074673.9|tubulin tyrosine ligase-like family, member 9 	ENSMUST00000103155.3|Ttll9|ENSMUSG00000074673.9|tubulin tyrosine ligase-like family, member 9
mm10_v2_chr14_+_66344296_66344316	5.41402	Hoxa1	ENSMUST00000152093.1|Stmn4|ENSMUSG00000022044.8|stathmin-like 4 	ENSMUST00000074523.6|Stmn4|ENSMUSG00000022044.8|stathmin-like 4
mm10_v2_chr10_+_26078255_26078255	5.2513	Hoxa1	ENSMUST00000041011.3|Gm9767|ENSMUSG00000039098.3|predicted gene 9767
mm10_v2_chr17_+_70522149_70522169	5.13276	Hoxa1	ENSMUST00000140728.1|Dlgap1|ENSMUSG00000003279.10|discs, large (Drosophila) homolog-associated protein 1
mm10_v2_chr10_+_79988584_79988683	4.94842	Hoxa1	ENSMUST00000004784.4|Cnn2|ENSMUSG00000004665.4|calponin 2 	ENSMUST00000105374.1|Cnn2|ENSMUSG00000004665.4|calponin 2
mm10_v2_chr8_-_11312731_11312826	4.90466	Hoxa1	ENSMUST00000033898.9|Col4a1|ENSMUSG00000031502.9|collagen, type IV, alpha 1
mm10_v2_chr19_-_41743665_41743706	4.74178	Hoxa1	ENSMUST00000025993.3|Slit1|ENSMUSG00000025020.5|slit homolog 1 (Drosophila)
mm10_v2_chr17_+_55445375_55445389	4.67983	Hoxa1	ENSMUST00000133899.1|St6gal2|ENSMUSG00000024172.4|beta galactoside alpha 2,6 sialyltransferase 2 	ENSMUST00000086878.3|St6gal2|ENSMUSG00000024172.4|beta galactoside alpha 2,6 sialyltransferase 2
mm10_v2_chr8_-_117673682_117673701	4.60474	Hoxa1	ENSMUST00000173522.1|Sdr42e1|ENSMUSG00000034308.7|short chain dehydrogenase/reductase family 42E, member 1 	ENSMUST00000174450.1|Sdr42e1|ENSMUSG00000034308.7|short chain dehydrogenase/reductase family 42E, member 1
mm10_v2_chr14_-_103844173_103844198	4.41205	Hoxa1	ENSMUST00000022718.3|Ednrb|ENSMUSG00000022122.8|endothelin receptor type B
mm10_v2_chr6_-_136875794_136875811	4.38352	Hoxa1	ENSMUST00000032342.1|Mgp|ENSMUSG00000030218.1|matrix Gla protein
mm10_v2_chr9_-_4796218_4796267	4.36714	Hoxa1	ENSMUST00000027020.6|Gria4|ENSMUSG00000025892.9|glutamate receptor, ionotropic, AMPA4 (alpha 4) 	ENSMUST00000063508.7|Gria4|ENSMUSG00000025892.9|glutamate receptor, ionotropic, AMPA4 (alpha 4) 	ENSMUST00000163309.1|Gria4|ENSMUSG00000025892.9|glutamate receptor, ionotropic, AMPA4 (alpha 4)
mm10_v2_chr2_-_26246707_26246707	4.325	Hoxa1	ENSMUST00000166349.1|C030048H21Rik|ENSMUSG00000090340.1|RIKEN cDNA C030048H21 gene
mm10_v2_chr5_+_137030275_137030295	4.2208	Hoxa1	ENSMUST00000041543.8|Vgf|ENSMUSG00000037428.8|VGF nerve growth factor inducible
mm10_v2_chr3_+_68572245_68572392	4.08999	Hoxa1	ENSMUST00000170788.2|Schip1|ENSMUSG00000027777.9|schwannomin interacting protein 1
mm10_v2_chr13_+_31806627_31806650	3.9688	Hoxa1	ENSMUST00000062292.2|Foxc1|ENSMUSG00000050295.2|forkhead box C1
mm10_v2_chr7_-_30534180_30534180	3.92085	Hoxa1	ENSMUST00000044338.4|Arhgap33|ENSMUSG00000036882.6|Rho GTPase activating protein 33
mm10_v2_chr4_-_143299463_143299482	3.9106	Hoxa1	ENSMUST00000119654.1|Pdpn|ENSMUSG00000028583.8|podoplanin
mm10_v2_chr1_+_153665274_153665325	3.70856	Hoxa1	ENSMUST00000152114.1|Rgs8|ENSMUSG00000042671.6|regulator of G-protein signaling 8 	ENSMUST00000111812.1|Rgs8|ENSMUSG00000042671.6|regulator of G-protein signaling 8
mm10_v2_chr11_+_103774150_103774193	3.70337	Hoxa1	ENSMUST00000000127.5|Wnt3|ENSMUSG00000000125.5|wingless-related MMTV integration site 3
mm10_v2_chr4_-_106799779_106799846	3.60842	Hoxa1	ENSMUST00000145061.1|Acot11|ENSMUSG00000034853.10|acyl-CoA thioesterase 11 	ENSMUST00000102762.3|Acot11|ENSMUSG00000034853.10|acyl-CoA thioesterase 11
mm10_v2_chr15_+_82252397_82252475	3.60107	Hoxa1	ENSMUST00000136948.1|1500009C09Rik|ENSMUSG00000068099.4|RIKEN cDNA 1500009C09 gene
mm10_v2_chr6_-_52012476_52012551	3.59568	Hoxa1	ENSMUST00000078214.5|Skap2|ENSMUSG00000059182.5|src family associated phosphoprotein 2
mm10_v2_chr10_+_81628570_81628635	3.57079	Hoxa1	ENSMUST00000153573.1|Ankrd24|ENSMUSG00000054708.11|ankyrin repeat domain 24 	ENSMUST00000119336.1|Ankrd24|ENSMUSG00000054708.11|ankyrin repeat domain 24
mm10_v2_chr5_-_135573036_135573051	3.55887	Hoxa1	ENSMUST00000004936.6|Ccl24|ENSMUSG00000004814.7|chemokine (C-C motif) ligand 24
mm10_v2_chr10_+_14523062_14523065	3.55054	Hoxa1	ENSMUST00000096020.5|Gm10335|ENSMUSG00000071532.5|predicted gene 10335
mm10_v2_chr13_-_60177357_60177373	3.46663	Hoxa1	ENSMUST00000065086.4|Gas1|ENSMUSG00000052957.7|growth arrest specific 1
mm10_v2_chr11_-_102296618_102296681	3.45048	Hoxa1	ENSMUST00000107132.2|Atxn7l3|ENSMUSG00000059995.6|ataxin 7-like 3 	ENSMUST00000073234.2|Atxn7l3|ENSMUSG00000059995.6|ataxin 7-like 3
mm10_v2_chr3_-_110143937_110144011	3.36017	Hoxa1	ENSMUST00000051253.3|Ntng1|ENSMUSG00000050836.3|netrin G1
mm10_v2_chr9_+_59589288_59589353	3.27304	Hoxa1	ENSMUST00000121266.1|Celf6|ENSMUSG00000032297.5|CUGBP, Elav-like family member 6 	ENSMUST00000118164.1|Celf6|ENSMUSG00000032297.5|CUGBP, Elav-like family member 6
mm10_v2_chr2_+_165595009_165595080	3.09488	Hoxa1	ENSMUST00000088132.6|Eya2|ENSMUSG00000017897.12|eyes absent 2 homolog (Drosophila)
mm10_v2_chr5_-_137684665_137684729	2.88004	Hoxa1	ENSMUST00000100544.4|Agfg2|ENSMUSG00000029722.9|ArfGAP with FG repeats 2 	ENSMUST00000031736.9|Agfg2|ENSMUSG00000029722.9|ArfGAP with FG repeats 2 	ENSMUST00000151839.1|Agfg2|ENSMUSG00000029722.9|ArfGAP with FG repeats 2
mm10_v2_chr7_-_16917184_16917212	2.8642	Hoxa1	ENSMUST00000173139.1|Calm3|ENSMUSG00000019370.10|calmodulin 3
mm10_v2_chr4_+_101507947_101508032	2.8197	Hoxa1	ENSMUST00000149047.1|Dnajc6|ENSMUSG00000028528.10|DnaJ (Hsp40) homolog, subfamily C, member 6 	ENSMUST00000106929.3|Dnajc6|ENSMUSG00000028528.10|DnaJ (Hsp40) homolog, subfamily C, member 6
mm10_v2_chr4_+_101507855_101507871	2.76646	Hoxa1	ENSMUST00000038207.5|Dnajc6|ENSMUSG00000028528.10|DnaJ (Hsp40) homolog, subfamily C, member 6
mm10_v2_chr9_-_21312255_21312333	2.71017	Hoxa1	ENSMUST00000115433.3|Ap1m2|ENSMUSG00000003309.7|adaptor protein complex AP-1, mu 2 subunit 	ENSMUST00000003397.7|Ap1m2|ENSMUSG00000003309.7|adaptor protein complex AP-1, mu 2 subunit
mm10_v2_chr1_+_89454769_89454885	2.69902	Hoxa1	ENSMUST00000027521.8|Agap1|ENSMUSG00000055013.8|ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 	ENSMUST00000074945.5|Agap1|ENSMUSG00000055013.8|ArfGAP with GTPase domain, ankyrin repeat and PH domain 1
mm10_v2_chr2_-_152951688_152951700	2.56442	Hoxa1	ENSMUST00000109811.3|Dusp15|ENSMUSG00000042662.10|dual specificity phosphatase-like 15
mm10_v2_chr11_-_40755201_40755311	2.4545	Hoxa1	ENSMUST00000020576.7|Ccng1|ENSMUSG00000020326.7|cyclin G1
mm10_v2_chr5_+_88583527_88583590	2.20072	Hoxa1	ENSMUST00000031229.6|Rufy3|ENSMUSG00000029291.7|RUN and FYVE domain containing 3
mm10_v2_chr3_-_89093358_89093367	2.14015	Hoxa1	ENSMUST00000090929.5|Rusc1|ENSMUSG00000041263.8|RUN and SH3 domain containing 1 	ENSMUST00000052539.6|Rusc1|ENSMUSG00000041263.8|RUN and SH3 domain containing 1
mm10_v2_chr10_+_81628540_81628567	2.03879	Hoxa1	ENSMUST00000123896.1|Ankrd24|ENSMUSG00000054708.11|ankyrin repeat domain 24
mm10_v2_chrX_+_38600626_38600691	2.03356	Hoxa1	ENSMUST00000000365.2|Mcts1|ENSMUSG00000000355.7|malignant T cell amplified sequence 1
mm10_v2_chr18_+_56562443_56562593	1.92691	Hoxa1	ENSMUST00000130163.1|Phax|ENSMUSG00000008301.5|phosphorylated adaptor for RNA export 	ENSMUST00000132628.1|Phax|ENSMUSG00000008301.5|phosphorylated adaptor for RNA export
mm10_v2_chr17_-_25081138_25081201	1.79294	Hoxa1	ENSMUST00000024984.6|Tmem204|ENSMUSG00000024168.7|transmembrane protein 204
mm10_v2_chr10_+_94576254_94576270	1.77132	Hoxa1	ENSMUST00000117929.1|Tmcc3|ENSMUSG00000020023.11|transmembrane and coiled coil domains 3
mm10_v2_chr10_-_63421739_63421739	1.72506	Hoxa1	ENSMUST00000054760.4|Gm7075|ENSMUSG00000048185.4|predicted gene 7075
mm10_v2_chr13_+_72628802_72628825	1.6964	Hoxa1	ENSMUST00000074372.4|Irx2|ENSMUSG00000001504.9|Iroquois related homeobox 2 (Drosophila)
mm10_v2_chr2_+_112261926_112261951	1.6339	Hoxa1	ENSMUST00000028553.3|Nop10|ENSMUSG00000027133.3|NOP10 ribonucleoprotein
mm10_v2_chr8_+_95825353_95825354	1.5437	Hoxa1	ENSMUST00000074053.4|Gm10094|ENSMUSG00000061104.4|predicted gene 10094
mm10_v2_chr16_-_18876655_18876767	1.51975	Hoxa1	ENSMUST00000023391.8|Mrpl40|ENSMUSG00000022706.9|mitochondrial ribosomal protein L40
mm10_v2_chr17_-_90455872_90456026	1.51554	Hoxa1	ENSMUST00000174337.1|Nrxn1|ENSMUSG00000024109.12|neurexin I 	ENSMUST00000172466.1|Nrxn1|ENSMUSG00000024109.12|neurexin I
mm10_v2_chr11_-_20332654_20332688	1.49848	Hoxa1	ENSMUST00000004634.6|Slc1a4|ENSMUSG00000020142.6|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4
mm10_v2_chr18_+_4994600_4994623	1.44649	Hoxa1	ENSMUST00000140448.1|Svil|ENSMUSG00000024236.11|supervillin
mm10_v2_chr4_+_119814495_119814526	1.43779	Hoxa1	ENSMUST00000106307.2|Hivep3|ENSMUSG00000028634.10|human immunodeficiency virus type I enhancer binding protein 3
mm10_v2_chrX_-_150812932_150813154	1.40071	Hoxa1	ENSMUST00000131241.1|Maged2|ENSMUSG00000025268.9|melanoma antigen, family D, 2 	ENSMUST00000147152.1|Maged2|ENSMUSG00000025268.9|melanoma antigen, family D, 2 	ENSMUST00000143843.1|Maged2|ENSMUSG00000025268.9|melanoma antigen, family D, 2
mm10_v2_chr11_+_24080664_24080706	1.38182	Hoxa1	ENSMUST00000118955.1|Bcl11a|ENSMUSG00000000861.9|B cell CLL/lymphoma 11A (zinc finger protein)
mm10_v2_chr13_-_12340723_12340760	1.37089	Hoxa1	ENSMUST00000168193.1|Actn2|ENSMUSG00000052374.8|actinin alpha 2 	ENSMUST00000110616.1|Actn2|ENSMUSG00000052374.8|actinin alpha 2 	ENSMUST00000064204.7|Actn2|ENSMUSG00000052374.8|actinin alpha 2
mm10_v2_chr7_+_144838590_144838614	1.28899	Hoxa1	ENSMUST00000105898.1|Fgf3|ENSMUSG00000031074.8|fibroblast growth factor 3
mm10_v2_chr8_-_67515606_67515606	1.25407	Hoxa1	ENSMUST00000032981.5|Gm9755|ENSMUSG00000030735.5|predicted pseudogene 9755
mm10_v2_chr16_+_23107413_23107479	1.10862	Hoxa1	ENSMUST00000023599.6|Eif4a2|ENSMUSG00000022884.8|eukaryotic translation initiation factor 4A2 	ENSMUST00000168891.1|Eif4a2|ENSMUSG00000022884.8|eukaryotic translation initiation factor 4A2
mm10_v2_chr2_+_36230426_36230491	1.08226	Hoxa1	ENSMUST00000062069.5|Ptgs1|ENSMUSG00000047250.7|prostaglandin-endoperoxide synthase 1
mm10_v2_chr14_-_69503316_69503362	1.05884	Hoxa1	ENSMUST00000179116.2|Gm21464|ENSMUSG00000093954.2|predicted gene, 21464
mm10_v2_chrX_-_8132770_8132857	0.93546	Hoxa1	ENSMUST00000130832.1|Wdr13|ENSMUSG00000031166.7|WD repeat domain 13 	ENSMUST00000033506.6|Wdr13|ENSMUSG00000031166.7|WD repeat domain 13 	ENSMUST00000115623.1|Wdr13|ENSMUSG00000031166.7|WD repeat domain 13 	ENSMUST00000153839.1|Wdr13|ENSMUSG00000031166.7|WD repeat domain 13
mm10_v2_chr16_-_18876522_18876570	0.821306	Hoxa1	ENSMUST00000119273.1|Mrpl40|ENSMUSG00000022706.9|mitochondrial ribosomal protein L40
mm10_v2_chr12_-_80260356_80260371	0.806607	Hoxa1	ENSMUST00000021554.8|Actn1|ENSMUSG00000015143.8|actinin, alpha 1
mm10_v2_chrX_-_150813637_150813712	0.577823	Hoxa1	ENSMUST00000112700.1|Maged2|ENSMUSG00000025268.9|melanoma antigen, family D, 2
mm10_v2_chr17_-_28622419_28622473	0.54732	Hoxa1	ENSMUST00000114767.1|Srpk1|ENSMUSG00000004865.9|serine/arginine-rich protein specific kinase 1
mm10_v2_chr8_-_8639363_8639363	0.504069	Hoxa1	ENSMUST00000152698.1|Efnb2|ENSMUSG00000001300.9|ephrin B2
mm10_v2_chr9_+_110344185_110344204	0.495784	Hoxa1	ENSMUST00000142100.1|Scap|ENSMUSG00000032485.8|SREBF chaperone
mm10_v2_chr6_+_91684061_91684132	0.450554	Hoxa1	ENSMUST00000032185.7|Slc6a6|ENSMUSG00000030096.7|solute carrier family 6 (neurotransmitter transporter, taurine), member 6
mm10_v2_chr13_+_72628831_72628971	0.449404	Hoxa1	ENSMUST00000169028.1|Irx2|ENSMUSG00000001504.9|Iroquois related homeobox 2 (Drosophila)
mm10_v2_chr15_-_53346118_53346169	0.449239	Hoxa1	ENSMUST00000077273.2|Ext1|ENSMUSG00000061731.3|exostoses (multiple) 1
mm10_v2_chrX_-_134161928_134161928	0.371155	Hoxa1	ENSMUST00000033611.4|Xkrx|ENSMUSG00000031258.4|X Kell blood group precursor related X linked
mm10_v2_chr12_+_53248677_53248677	0.27963	Hoxa1	ENSMUST00000101432.2|Npas3|ENSMUSG00000021010.7|neuronal PAS domain protein 3
mm10_v2_chr2_-_131042682_131042682	0.20511	Hoxa1	ENSMUST00000028787.5|Gfra4|ENSMUSG00000027316.9|glial cell line derived neurotrophic factor family receptor alpha 4 	ENSMUST00000110239.1|Gfra4|ENSMUSG00000027316.9|glial cell line derived neurotrophic factor family receptor alpha 4 	ENSMUST00000110234.1|Gfra4|ENSMUSG00000027316.9|glial cell line derived neurotrophic factor family receptor alpha 4
mm10_v2_chr5_+_135369942_135369997	0.165847	Hoxa1	ENSMUST00000000940.8|Nsun5|ENSMUSG00000000916.9|NOL1/NOP2/Sun domain family, member 5
mm10_v2_chr4_-_108406676_108406745	0.143251	Hoxa1	ENSMUST00000184609.1|Gpx7|ENSMUSG00000028597.11|glutathione peroxidase 7
mm10_v2_chr6_-_88446491_88446539	0.0975097	Hoxa1	ENSMUST00000165242.1|Eefsec|ENSMUSG00000033216.7|eukaryotic elongation factor, selenocysteine-tRNA-specific
mm10_v2_chr2_-_131043088_131043088	0.0373038	Hoxa1	ENSMUST00000110240.3|Gfra4|ENSMUSG00000027316.9|glial cell line derived neurotrophic factor family receptor alpha 4 	ENSMUST00000066958.4|Gfra4|ENSMUSG00000027316.9|glial cell line derived neurotrophic factor family receptor alpha 4 	ENSMUST00000110235.1|Gfra4|ENSMUSG00000027316.9|glial cell line derived neurotrophic factor family receptor alpha 4
mm10_v2_chr4_-_11981265_11981265	0.0163217	Hoxa1	ENSMUST00000098260.2|Gm10604|ENSMUSG00000073995.2|predicted gene 10604
