mm10_v2_chrM_+_10167_10167	4.91187	Hoxd1	ENSMUST00000082414.1|mt-Nd4|ENSMUSG00000064363.1|mitochondrially encoded NADH dehydrogenase 4
mm10_v2_chr17_-_45659312_45659335	4.62264	Hoxd1	ENSMUST00000120717.1|Capn11|ENSMUSG00000058626.10|calpain 11
mm10_v2_chr2_+_116067213_116067250	4.33586	Hoxd1	ENSMUST00000152412.1|G630016G05Rik|ENSMUSG00000086308.1|RIKEN cDNA G630016G05 gene
mm10_v2_chr2_-_20943413_20943424	4.23855	Hoxd1	ENSMUST00000140230.1|Arhgap21|ENSMUSG00000036591.9|Rho GTPase activating protein 21
mm10_v2_chr2_+_150323702_150323702	3.83919	Hoxd1	ENSMUST00000133235.2|Gm10130|ENSMUSG00000095315.1|predicted gene 10130
mm10_v2_chr5_-_62766153_62766246	3.78043	Hoxd1	ENSMUST00000076623.4|Arap2|ENSMUSG00000037999.9|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2
mm10_v2_chr2_+_119047129_119047159	3.60163	Hoxd1	ENSMUST00000153300.1|Casc5|ENSMUSG00000027326.7|cancer susceptibility candidate 5 	ENSMUST00000028799.5|Casc5|ENSMUSG00000027326.7|cancer susceptibility candidate 5
mm10_v2_chr3_-_85722474_85722474	3.60096	Hoxd1	ENSMUST00000119077.1|Fam160a1|ENSMUSG00000051000.11|family with sequence similarity 160, member A1
mm10_v2_chrM_+_9870_9885	3.47376	Hoxd1	ENSMUST00000084013.1|mt-Nd4l|ENSMUSG00000065947.3|mitochondrially encoded NADH dehydrogenase 4L
mm10_v2_chr1_+_139454747_139454825	3.46388	Hoxd1	ENSMUST00000053364.8|Aspm|ENSMUSG00000033952.8|asp (abnormal spindle)-like, microcephaly associated (Drosophila) 	ENSMUST00000097554.3|Aspm|ENSMUSG00000033952.8|asp (abnormal spindle)-like, microcephaly associated (Drosophila)
mm10_v2_chr2_+_119047116_119047121	3.39804	Hoxd1	ENSMUST00000152380.1|Casc5|ENSMUSG00000027326.7|cancer susceptibility candidate 5 	ENSMUST00000099542.2|Casc5|ENSMUSG00000027326.7|cancer susceptibility candidate 5
mm10_v2_chr2_-_116067391_116067444	3.20645	Hoxd1	ENSMUST00000140185.1|2700033N17Rik|ENSMUSG00000086328.1|RIKEN cDNA 2700033N17 gene
mm10_v2_chr12_-_55014329_55014353	3.12083	Hoxd1	ENSMUST00000172875.1|Baz1a|ENSMUSG00000035021.7|bromodomain adjacent to zinc finger domain 1A
mm10_v2_chr2_+_3424123_3424207	3.05595	Hoxd1	ENSMUST00000061852.5|Dclre1c|ENSMUSG00000026648.12|DNA cross-link repair 1C, PSO2 homolog (S. cerevisiae) 	ENSMUST00000100463.3|Dclre1c|ENSMUSG00000026648.12|DNA cross-link repair 1C, PSO2 homolog (S. cerevisiae) 	ENSMUST00000102988.3|Dclre1c|ENSMUSG00000026648.12|DNA cross-link repair 1C, PSO2 homolog (S. cerevisiae) 	ENSMUST00000115066.1|Dclre1c|ENSMUSG00000026648.12|DNA cross-link repair 1C, PSO2 homolog (S. cerevisiae)
mm10_v2_chr2_-_177267036_177267036	3.0379	Hoxd1	ENSMUST00000108963.1|Gm14409|ENSMUSG00000078869.2|predicted gene 14409
mm10_v2_chr1_-_24612700_24612700	2.94791	Hoxd1	ENSMUST00000088336.1|Gm10222|ENSMUSG00000067736.1|predicted gene 10222
mm10_v2_chr5_+_134932351_134932406	2.91687	Hoxd1	ENSMUST00000047196.7|Wbscr27|ENSMUSG00000040557.8|Williams Beuren syndrome chromosome region 27 (human) 	ENSMUST00000111221.2|Wbscr27|ENSMUSG00000040557.8|Williams Beuren syndrome chromosome region 27 (human) 	ENSMUST00000111219.1|Wbscr27|ENSMUSG00000040557.8|Williams Beuren syndrome chromosome region 27 (human) 	ENSMUST00000068617.5|Wbscr27|ENSMUSG00000040557.8|Williams Beuren syndrome chromosome region 27 (human) 	ENSMUST00000111218.1|Wbscr27|ENSMUSG00000040557.8|Williams Beuren syndrome chromosome region 27 (human) 	ENSMUST00000136246.1|Wbscr27|ENSMUSG00000040557.8|Williams Beuren syndrome chromosome region 27 (human)
mm10_v2_chr5_+_107497762_107497802	2.86005	Hoxd1	ENSMUST00000152474.1|A830010M20Rik|ENSMUSG00000044060.11|RIKEN cDNA A830010M20 gene 	ENSMUST00000060553.7|A830010M20Rik|ENSMUSG00000044060.11|RIKEN cDNA A830010M20 gene
mm10_v2_chr17_+_88440711_88440741	2.76844	Hoxd1	ENSMUST00000112238.2|Foxn2|ENSMUSG00000034998.12|forkhead box N2 	ENSMUST00000155640.1|Foxn2|ENSMUSG00000034998.12|forkhead box N2
mm10_v2_chr1_+_65186727_65186750	2.73192	Hoxd1	ENSMUST00000097707.4|Pikfyve|ENSMUSG00000025949.9|phosphoinositide kinase, FYVE finger containing 	ENSMUST00000081154.7|Pikfyve|ENSMUSG00000025949.9|phosphoinositide kinase, FYVE finger containing
mm10_v2_chr13_-_105054895_105054930	2.69059	Hoxd1	ENSMUST00000063551.5|Rgs7bp|ENSMUSG00000021719.8|regulator of G-protein signalling 7 binding protein
mm10_v2_chr19_+_23723279_23723279	2.50737	Hoxd1	ENSMUST00000067077.1|Gm9938|ENSMUSG00000054178.1|predicted gene 9938
mm10_v2_chr4_+_147132038_147132038	2.44153	Hoxd1	ENSMUST00000084149.3|Gm13139|ENSMUSG00000067916.3|predicted gene 13139
mm10_v2_chr9_-_85749308_85749356	2.41334	Hoxd1	ENSMUST00000039213.8|Ibtk|ENSMUSG00000035941.9|inhibitor of Bruton agammaglobulinemia tyrosine kinase
mm10_v2_chr6_-_57535422_57535447	2.36342	Hoxd1	ENSMUST00000042766.3|Ppm1k|ENSMUSG00000037826.3|protein phosphatase 1K (PP2C domain containing)
mm10_v2_chr13_-_67332525_67332553	2.34292	Hoxd1	ENSMUST00000168892.1|Zfp595|ENSMUSG00000057842.7|zinc finger protein 595 	ENSMUST00000109735.2|Zfp595|ENSMUSG00000057842.7|zinc finger protein 595
mm10_v2_chr15_+_25773985_25774042	2.32772	Hoxd1	ENSMUST00000125667.1|Myo10|ENSMUSG00000022272.11|myosin X
mm10_v2_chr5_-_106926245_106926321	2.27777	Hoxd1	ENSMUST00000117588.1|Hfm1|ENSMUSG00000043410.10|HFM1, ATP-dependent DNA helicase homolog (S. cerevisiae)
mm10_v2_chr6_+_149582012_149582012	2.27355	Hoxd1	ENSMUST00000144085.2|Gm21814|ENSMUSG00000096299.1|predicted gene, 21814
mm10_v2_chr5_+_107497718_107497759	2.19999	Hoxd1	ENSMUST00000112671.2|A830010M20Rik|ENSMUSG00000044060.11|RIKEN cDNA A830010M20 gene
mm10_v2_chr16_-_16600533_16600576	2.18576	Hoxd1	ENSMUST00000159542.1|Fgd4|ENSMUSG00000022788.10|FYVE, RhoGEF and PH domain containing 4
mm10_v2_chr4_+_146610961_146610961	2.182	Hoxd1	ENSMUST00000130825.1|Gm13248|ENSMUSG00000063245.5|predicted gene 13248
mm10_v2_chr17_-_36032682_36032855	2.14244	Hoxd1	ENSMUST00000102678.4|H2-T23|ENSMUSG00000067212.8|histocompatibility 2, T region locus 23
mm10_v2_chr3_-_116712644_116712655	2.12104	Hoxd1	ENSMUST00000029569.2|Slc35a3|ENSMUSG00000027957.7|solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member 3
mm10_v2_chr12_+_52699297_52699411	2.11675	Hoxd1	ENSMUST00000095737.3|Akap6|ENSMUSG00000061603.7|A kinase (PRKA) anchor protein 6
mm10_v2_chrX_+_9885622_9885622	2.08621	Hoxd1	ENSMUST00000067529.2|Sytl5|ENSMUSG00000054453.5|synaptotagmin-like 5 	ENSMUST00000086165.3|Sytl5|ENSMUSG00000054453.5|synaptotagmin-like 5
mm10_v2_chr4_+_145585166_145585211	2.06388	Hoxd1	ENSMUST00000105739.1|Gm13212|ENSMUSG00000078502.4|predicted gene 13212 	ENSMUST00000119718.1|Gm13212|ENSMUSG00000078502.4|predicted gene 13212
mm10_v2_chr3_-_41742471_41742548	2.04469	Hoxd1	ENSMUST00000026866.8|Sclt1|ENSMUSG00000059834.6|sodium channel and clathrin linker 1
mm10_v2_chr2_+_69897255_69897303	2.00859	Hoxd1	ENSMUST00000131553.1|Ubr3|ENSMUSG00000044308.11|ubiquitin protein ligase E3 component n-recognin 3
mm10_v2_chr15_+_98571004_98571026	1.93863	Hoxd1	ENSMUST00000023728.6|4930415O20Rik|ENSMUSG00000022993.6|RIKEN cDNA 4930415O20 gene
mm10_v2_chr8_-_122915987_122915987	1.87042	Hoxd1	ENSMUST00000098333.4|Ankrd11|ENSMUSG00000035569.10|ankyrin repeat domain 11
mm10_v2_chr1_-_33814516_33814576	1.86227	Hoxd1	ENSMUST00000044455.5|Zfp451|ENSMUSG00000042197.7|zinc finger protein 451 	ENSMUST00000115167.1|Zfp451|ENSMUSG00000042197.7|zinc finger protein 451
mm10_v2_chr11_+_35121126_35121224	1.84364	Hoxd1	ENSMUST00000069837.3|Slit3|ENSMUSG00000056427.4|slit homolog 3 (Drosophila)
mm10_v2_chr2_+_69897220_69897247	1.81205	Hoxd1	ENSMUST00000055758.9|Ubr3|ENSMUSG00000044308.11|ubiquitin protein ligase E3 component n-recognin 3 	ENSMUST00000112251.2|Ubr3|ENSMUSG00000044308.11|ubiquitin protein ligase E3 component n-recognin 3
mm10_v2_chr9_-_123851855_123851912	1.80461	Hoxd1	ENSMUST00000184082.1|Fyco1|ENSMUSG00000025241.9|FYVE and coiled-coil domain containing 1 	ENSMUST00000167595.2|Fyco1|ENSMUSG00000025241.9|FYVE and coiled-coil domain containing 1
mm10_v2_chrX_-_143933089_143933142	1.80262	Hoxd1	ENSMUST00000087313.3|Dcx|ENSMUSG00000031285.8|doublecortin
mm10_v2_chr5_-_123012874_123012880	1.77459	Hoxd1	ENSMUST00000172729.1|Kdm2b|ENSMUSG00000029475.11|lysine (K)-specific demethylase 2B
mm10_v2_chr2_+_109917639_109917656	1.73426	Hoxd1	ENSMUST00000046548.7|Lgr4|ENSMUSG00000050199.7|leucine-rich repeat-containing G protein-coupled receptor 4 	ENSMUST00000111037.2|Lgr4|ENSMUSG00000050199.7|leucine-rich repeat-containing G protein-coupled receptor 4
mm10_v2_chr2_+_121956651_121956664	1.6745	Hoxd1	ENSMUST00000110574.1|Ctdspl2|ENSMUSG00000033411.10|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2
mm10_v2_chr16_-_55934845_55934868	1.67041	Hoxd1	ENSMUST00000121129.1|Cep97|ENSMUSG00000022604.12|centrosomal protein 97 	ENSMUST00000023270.7|Cep97|ENSMUSG00000022604.12|centrosomal protein 97
mm10_v2_chr5_-_63968867_63968905	1.65676	Hoxd1	ENSMUST00000154169.1|Rell1|ENSMUSG00000047881.8|RELT-like 1
mm10_v2_chr12_-_98577940_98578046	1.63832	Hoxd1	ENSMUST00000110113.1|Kcnk10|ENSMUSG00000033854.9|potassium channel, subfamily K, member 10
mm10_v2_chr4_-_147809788_147809840	1.63579	Hoxd1	ENSMUST00000105734.3|Gm13157|ENSMUSG00000078495.4|predicted gene 13157 	ENSMUST00000176201.1|Gm20707|ENSMUSG00000093594.1|predicted gene 20707
mm10_v2_chr13_+_44121167_44121322	1.61412	Hoxd1	ENSMUST00000163056.1|Gm5083|ENSMUSG00000089815.1|predicted gene 5083 	ENSMUST00000159595.1|Gm5083|ENSMUSG00000089815.1|predicted gene 5083
mm10_v2_chr9_-_55919605_55919605	1.58038	Hoxd1	ENSMUST00000037408.8|Scaper|ENSMUSG00000034007.9|S phase cyclin A-associated protein in the ER
mm10_v2_chrX_+_16619698_16619758	1.53635	Hoxd1	ENSMUST00000026013.5|Maoa|ENSMUSG00000025037.6|monoamine oxidase A
mm10_v2_chr15_-_8710734_8710764	1.53023	Hoxd1	ENSMUST00000005493.7|Slc1a3|ENSMUSG00000005360.8|solute carrier family 1 (glial high affinity glutamate transporter), member 3
mm10_v2_chr15_-_8710409_8710498	1.51346	Hoxd1	ENSMUST00000157065.1|Slc1a3|ENSMUSG00000005360.8|solute carrier family 1 (glial high affinity glutamate transporter), member 3
mm10_v2_chr14_+_62292475_62292589	1.48659	Hoxd1	ENSMUST00000166879.1|Rnaseh2b|ENSMUSG00000021932.7|ribonuclease H2, subunit B
mm10_v2_chr4_+_103143052_103143071	1.48443	Hoxd1	ENSMUST00000106855.1|Mier1|ENSMUSG00000028522.10|mesoderm induction early response 1 homolog (Xenopus laevis
mm10_v2_chr9_-_107872403_107872422	1.47632	Hoxd1	ENSMUST00000183035.1|Rbm6|ENSMUSG00000032582.8|RNA binding motif protein 6
mm10_v2_chr8_-_41041828_41041866	1.46451	Hoxd1	ENSMUST00000051379.7|Mtus1|ENSMUSG00000045636.10|mitochondrial tumor suppressor 1
mm10_v2_chr7_+_130774069_130774185	1.43492	Hoxd1	ENSMUST00000048453.5|Btbd16|ENSMUSG00000040298.5|BTB (POZ) domain containing 16
mm10_v2_chr5_-_70842617_70842617	1.39994	Hoxd1	ENSMUST00000031119.1|Gabrg1|ENSMUSG00000001260.6|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 1
mm10_v2_chr12_-_84617326_84617466	1.37725	Hoxd1	ENSMUST00000021666.4|Abcd4|ENSMUSG00000021240.5|ATP-binding cassette, sub-family D (ALD), member 4
mm10_v2_chr1_-_33814591_33814600	1.37578	Hoxd1	ENSMUST00000019861.6|Zfp451|ENSMUSG00000042197.7|zinc finger protein 451
mm10_v2_chr19_-_37330613_37330613	1.36778	Hoxd1	ENSMUST00000131070.1|Ide|ENSMUSG00000056999.8|insulin degrading enzyme
mm10_v2_chr16_-_55934797_55934840	1.36772	Hoxd1	ENSMUST00000122280.1|Cep97|ENSMUSG00000022604.12|centrosomal protein 97 	ENSMUST00000121703.2|Cep97|ENSMUSG00000022604.12|centrosomal protein 97
mm10_v2_chr10_-_120112946_120112987	1.35968	Hoxd1	ENSMUST00000020449.5|Helb|ENSMUSG00000020228.5|helicase (DNA) B
mm10_v2_chr2_-_45117349_45117395	1.35397	Hoxd1	ENSMUST00000176438.2|Zeb2|ENSMUSG00000026872.10|zinc finger E-box binding homeobox 2
mm10_v2_chr11_-_107337556_107337637	1.34763	Hoxd1	ENSMUST00000040380.6|Pitpnc1|ENSMUSG00000040430.12|phosphatidylinositol transfer protein, cytoplasmic 1
mm10_v2_chr4_-_132075250_132075292	1.33691	Hoxd1	ENSMUST00000105970.1|Epb4.1|ENSMUSG00000028906.9|erythrocyte protein band 4.1 	ENSMUST00000105975.1|Epb4.1|ENSMUSG00000028906.9|erythrocyte protein band 4.1
mm10_v2_chr7_-_6730412_6730431	1.32665	Hoxd1	ENSMUST00000051209.4|Peg3|ENSMUSG00000002265.9|paternally expressed 3
mm10_v2_chrX_-_143933204_143933311	1.31494	Hoxd1	ENSMUST00000112851.1|Dcx|ENSMUSG00000031285.8|doublecortin 	ENSMUST00000112856.2|Dcx|ENSMUSG00000031285.8|doublecortin 	ENSMUST00000033642.3|Dcx|ENSMUSG00000031285.8|doublecortin
mm10_v2_chr14_+_26259109_26259109	1.25704	Hoxd1	ENSMUST00000174494.1|Duxbl3|ENSMUSG00000072672.4|double homeobox B-like 3
mm10_v2_chr2_+_121956411_121956480	1.22429	Hoxd1	ENSMUST00000110578.1|Ctdspl2|ENSMUSG00000033411.10|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2
mm10_v2_chr1_-_172027269_172027313	1.20473	Hoxd1	ENSMUST00000027837.6|Vangl2|ENSMUSG00000026556.9|vang-like 2 (van gogh, Drosophila) 	ENSMUST00000111264.1|Vangl2|ENSMUSG00000026556.9|vang-like 2 (van gogh, Drosophila)
mm10_v2_chrX_-_75578188_75578247	1.19649	Hoxd1	ENSMUST00000033545.5|Rab39b|ENSMUSG00000031202.5|RAB39B, member RAS oncogene family
mm10_v2_chr10_-_110000219_110000219	1.11641	Hoxd1	ENSMUST00000032719.7|Nav3|ENSMUSG00000020181.9|neuron navigator 3
mm10_v2_chr13_+_83732438_83732566	1.11159	Hoxd1	ENSMUST00000182701.1|C130071C03Rik|ENSMUSG00000050334.6|RIKEN cDNA C130071C03 gene
mm10_v2_chr9_+_72958785_72958850	1.06181	Hoxd1	ENSMUST00000098567.2|Dyx1c1|ENSMUSG00000092192.1|dyslexia susceptibility 1 candidate 1 homolog (human) 	ENSMUST00000034734.8|Dyx1c1|ENSMUSG00000092192.1|dyslexia susceptibility 1 candidate 1 homolog (human)
mm10_v2_chr3_+_40800778_40800786	1.02075	Hoxd1	ENSMUST00000169566.1|Plk4|ENSMUSG00000025758.5|polo-like kinase 4
mm10_v2_chr7_+_29816061_29816153	0.975676	Hoxd1	ENSMUST00000032796.6|Zfp790|ENSMUSG00000011427.9|zinc finger protein 790 	ENSMUST00000178162.1|Zfp790|ENSMUSG00000011427.9|zinc finger protein 790
mm10_v2_chr19_+_3323301_3323339	0.95744	Hoxd1	ENSMUST00000025835.4|Cpt1a|ENSMUSG00000024900.4|carnitine palmitoyltransferase 1a, liver
mm10_v2_chr17_-_32822200_32822200	0.937571	Hoxd1	ENSMUST00000179695.1|Zfp799|ENSMUSG00000095253.1|zinc finger protein 799
mm10_v2_chr2_-_156392829_156392993	0.928284	Hoxd1	ENSMUST00000088578.2|2900097C17Rik|ENSMUSG00000067833.2|RIKEN cDNA 2900097C17 gene
mm10_v2_chr16_+_34690548_34690616	0.917351	Hoxd1	ENSMUST00000023532.6|Ccdc14|ENSMUSG00000022833.6|coiled-coil domain containing 14
mm10_v2_chr3_+_103739366_103739366	0.911375	Hoxd1	ENSMUST00000106852.1|Gm10964|ENSMUSG00000078620.1|predicted gene 10964
mm10_v2_chr11_-_87108656_87108719	0.894346	Hoxd1	ENSMUST00000051395.8|Prr11|ENSMUSG00000020493.8|proline rich 11
mm10_v2_chr4_+_147492417_147492417	0.892615	Hoxd1	ENSMUST00000105721.2|Gm13152|ENSMUSG00000078496.3|predicted gene 13152
mm10_v2_chr12_+_72441852_72441866	0.881899	Hoxd1	ENSMUST00000162159.1|Lrrc9|ENSMUSG00000021090.9|leucine rich repeat containing 9
mm10_v2_chr16_+_52031549_52031570	0.865352	Hoxd1	ENSMUST00000114471.1|Cblb|ENSMUSG00000022637.10|Casitas B-lineage lymphoma b
mm10_v2_chr14_+_48446128_48446276	0.861176	Hoxd1	ENSMUST00000124720.1|Tmem260|ENSMUSG00000036339.11|transmembrane protein 260
mm10_v2_chr14_-_75754475_75754563	0.827748	Hoxd1	ENSMUST00000049168.7|Cog3|ENSMUSG00000034893.7|component of oligomeric golgi complex 3
mm10_v2_chr11_-_117826092_117826092	0.82669	Hoxd1	ENSMUST00000026661.3|Tk1|ENSMUSG00000025574.7|thymidine kinase 1
mm10_v2_chr10_-_117148474_117148510	0.798039	Hoxd1	ENSMUST00000020381.3|Frs2|ENSMUSG00000020170.3|fibroblast growth factor receptor substrate 2
mm10_v2_chr6_+_34029421_34029456	0.793233	Hoxd1	ENSMUST00000070189.3|Lrguk|ENSMUSG00000056215.6|leucine-rich repeats and guanylate kinase domain containing 	ENSMUST00000101564.2|Lrguk|ENSMUSG00000056215.6|leucine-rich repeats and guanylate kinase domain containing
mm10_v2_chr17_-_32886083_32886083	0.7908	Hoxd1	ENSMUST00000178401.1|Zfp870|ENSMUSG00000095325.1|zinc finger protein 870
mm10_v2_chr10_+_90071095_90071117	0.770454	Hoxd1	ENSMUST00000183109.1|Anks1b|ENSMUSG00000058589.8|ankyrin repeat and sterile alpha motif domain containing 1B
mm10_v2_chr6_+_72097561_72097630	0.767582	Hoxd1	ENSMUST00000069994.4|St3gal5|ENSMUSG00000056091.6|ST3 beta-galactoside alpha-2,3-sialyltransferase 5 	ENSMUST00000114112.1|St3gal5|ENSMUSG00000056091.6|ST3 beta-galactoside alpha-2,3-sialyltransferase 5
mm10_v2_chr9_-_15301555_15301607	0.729643	Hoxd1	ENSMUST00000034414.8|4931406C07Rik|ENSMUSG00000031938.8|RIKEN cDNA 4931406C07 gene
mm10_v2_chr9_+_105395348_105395411	0.719108	Hoxd1	ENSMUST00000035181.3|Aste1|ENSMUSG00000032567.8|asteroid homolog 1 (Drosophila)
mm10_v2_chr9_-_105395237_105395289	0.717255	Hoxd1	ENSMUST00000140851.1|Nek11|ENSMUSG00000035032.5|NIMA (never in mitosis gene a)-related expressed kinase 11
mm10_v2_chr12_+_72441933_72441970	0.716365	Hoxd1	ENSMUST00000161284.1|Lrrc9|ENSMUSG00000021090.9|leucine rich repeat containing 9
mm10_v2_chr14_+_26119811_26119811	0.707284	Hoxd1	ENSMUST00000173617.1|Duxbl2|ENSMUSG00000072675.6|doubl homeobox B-like 2
mm10_v2_chr3_+_94837702_94837723	0.684226	Hoxd1	ENSMUST00000107266.1|Pogz|ENSMUSG00000038902.8|pogo transposable element with ZNF domain 	ENSMUST00000042402.5|Pogz|ENSMUSG00000038902.8|pogo transposable element with ZNF domain 	ENSMUST00000107269.1|Pogz|ENSMUSG00000038902.8|pogo transposable element with ZNF domain
mm10_v2_chr14_+_25980039_25980039	0.675336	Hoxd1	ENSMUST00000173155.1|Duxbl1|ENSMUSG00000048502.8|double homeobox B-like 1
mm10_v2_chr10_-_76110956_76110962	0.673578	Hoxd1	ENSMUST00000120757.1|Slc5a4b|ENSMUSG00000020226.9|solute carrier family 5 (neutral amino acid transporters, system A), member 4b
mm10_v2_chr2_+_131491764_131491943	0.586819	Hoxd1	ENSMUST00000028806.5|Smox|ENSMUSG00000027333.12|spermine oxidase 	ENSMUST00000110179.2|Smox|ENSMUSG00000027333.12|spermine oxidase 	ENSMUST00000110189.2|Smox|ENSMUSG00000027333.12|spermine oxidase 	ENSMUST00000110182.2|Smox|ENSMUSG00000027333.12|spermine oxidase 	ENSMUST00000110183.2|Smox|ENSMUSG00000027333.12|spermine oxidase 	ENSMUST00000110186.2|Smox|ENSMUSG00000027333.12|spermine oxidase 	ENSMUST00000110188.1|Smox|ENSMUSG00000027333.12|spermine oxidase
mm10_v2_chr11_+_60537978_60538074	0.586162	Hoxd1	ENSMUST00000044250.3|Alkbh5|ENSMUSG00000042650.3|alkB, alkylation repair homolog 5 (E. coli)
mm10_v2_chr14_+_47298260_47298342	0.574829	Hoxd1	ENSMUST00000166743.1|Mapk1ip1l|ENSMUSG00000021840.10|mitogen-activated protein kinase 1 interacting protein 1-like
mm10_v2_chr18_+_31609512_31609512	0.567811	Hoxd1	ENSMUST00000164667.1|B930094E09Rik|ENSMUSG00000092124.1|RIKEN cDNA B930094E09 gene
mm10_v2_chr7_+_127511976_127512075	0.545629	Hoxd1	ENSMUST00000098025.4|Srcap|ENSMUSG00000053877.6|Snf2-related CREBBP activator protein
mm10_v2_chr14_-_104522615_104522707	0.539489	Hoxd1	ENSMUST00000022716.2|Rnf219|ENSMUSG00000022120.3|ring finger protein 219
mm10_v2_chr2_-_73580288_73580353	0.510076	Hoxd1	ENSMUST00000028515.3|Chrna1|ENSMUSG00000027107.3|cholinergic receptor, nicotinic, alpha polypeptide 1 (muscle)
mm10_v2_chr7_+_128744870_128745020	0.472554	Hoxd1	ENSMUST00000042942.8|Sec23ip|ENSMUSG00000055319.7|Sec23 interacting protein
mm10_v2_chr2_+_91257323_91257371	0.463111	Hoxd1	ENSMUST00000111349.2|Pacsin3|ENSMUSG00000027257.7|protein kinase C and casein kinase substrate in neurons 3 	ENSMUST00000131711.1|Pacsin3|ENSMUSG00000027257.7|protein kinase C and casein kinase substrate in neurons 3
mm10_v2_chr11_-_45955183_45955193	0.45555	Hoxd1	ENSMUST00000109254.1|Thg1l|ENSMUSG00000011254.10|tRNA-histidine guanylyltransferase 1-like (S. cerevisiae)
mm10_v2_chr13_-_56895737_56895793	0.427585	Hoxd1	ENSMUST00000022023.6|Trpc7|ENSMUSG00000021541.7|transient receptor potential cation channel, subfamily C, member 7 	ENSMUST00000109871.1|Trpc7|ENSMUSG00000021541.7|transient receptor potential cation channel, subfamily C, member 7
mm10_v2_chr8_+_113635787_113635842	0.421509	Hoxd1	ENSMUST00000035777.8|Mon1b|ENSMUSG00000078908.3|MON1 homolog b (yeast)
mm10_v2_chrX_-_160138375_160138435	0.41199	Hoxd1	ENSMUST00000033662.8|Pdha1|ENSMUSG00000031299.10|pyruvate dehydrogenase E1 alpha 1
mm10_v2_chr7_+_79273201_79273270	0.409924	Hoxd1	ENSMUST00000037315.6|Abhd2|ENSMUSG00000039202.6|abhydrolase domain containing 2
mm10_v2_chr18_-_60273267_60273267	0.378038	Hoxd1	ENSMUST00000090260.4|Gm4841|ENSMUSG00000068606.5|predicted gene 4841
mm10_v2_chr11_-_45955465_45955494	0.358557	Hoxd1	ENSMUST00000011398.6|Thg1l|ENSMUSG00000011254.10|tRNA-histidine guanylyltransferase 1-like (S. cerevisiae)
mm10_v2_chr17_+_17402672_17402771	0.351524	Hoxd1	ENSMUST00000115576.2|Lix1|ENSMUSG00000047786.12|limb expression 1 homolog (chicken)
mm10_v2_chr19_-_32196393_32196428	0.329039	Hoxd1	ENSMUST00000151822.1|Sgms1|ENSMUSG00000040451.11|sphingomyelin synthase 1
mm10_v2_chr3_+_94837533_94837567	0.299151	Hoxd1	ENSMUST00000107270.2|Pogz|ENSMUSG00000038902.8|pogo transposable element with ZNF domain
mm10_v2_chr2_-_69712461_69712606	0.275525	Hoxd1	ENSMUST00000102706.3|Fastkd1|ENSMUSG00000027086.10|FAST kinase domains 1 	ENSMUST00000073152.6|Fastkd1|ENSMUSG00000027086.10|FAST kinase domains 1
mm10_v2_chr10_-_86011833_86011896	0.253154	Hoxd1	ENSMUST00000105304.1|Bpifc|ENSMUSG00000050108.6|BPI fold containing family C 	ENSMUST00000061699.5|Bpifc|ENSMUSG00000050108.6|BPI fold containing family C
mm10_v2_chrM_+_7759_7927	0.249202	Hoxd1	ENSMUST00000082407.1|mt-Atp8|ENSMUSG00000064356.3|mitochondrially encoded ATP synthase 8 	ENSMUST00000082408.1|mt-Atp6|ENSMUSG00000064357.1|mitochondrially encoded ATP synthase 6
mm10_v2_chr5_+_29195983_29196032	0.246557	Hoxd1	ENSMUST00000160888.1|Rnf32|ENSMUSG00000029130.6|ring finger protein 32 	ENSMUST00000159272.1|Rnf32|ENSMUSG00000029130.6|ring finger protein 32 	ENSMUST00000001247.5|Rnf32|ENSMUSG00000029130.6|ring finger protein 32 	ENSMUST00000161398.1|Rnf32|ENSMUSG00000029130.6|ring finger protein 32 	ENSMUST00000160246.1|Rnf32|ENSMUSG00000029130.6|ring finger protein 32
mm10_v2_chr8_+_113635550_113635597	0.234261	Hoxd1	ENSMUST00000179926.1|Mon1b|ENSMUSG00000078908.3|MON1 homolog b (yeast)
mm10_v2_chr16_+_11406618_11406675	0.225759	Hoxd1	ENSMUST00000122168.1|Snx29|ENSMUSG00000071669.8|sorting nexin 29
mm10_v2_chr11_+_87109221_87109239	0.217094	Hoxd1	ENSMUST00000020794.5|Ska2|ENSMUSG00000020492.5|spindle and kinetochore associated complex subunit 2
mm10_v2_chr12_-_87388317_87388355	0.192282	Hoxd1	ENSMUST00000021424.4|Sptlc2|ENSMUSG00000021036.4|serine palmitoyltransferase, long chain base subunit 2
mm10_v2_chr8_-_105966038_105966120	0.175725	Hoxd1	ENSMUST00000116429.2|Slc12a4|ENSMUSG00000017765.10|solute carrier family 12, member 4 	ENSMUST00000034370.9|Slc12a4|ENSMUSG00000017765.10|solute carrier family 12, member 4
mm10_v2_chr4_+_134930898_134930997	0.160547	Hoxd1	ENSMUST00000030622.2|Syf2|ENSMUSG00000028821.2|SYF2 homolog, RNA splicing factor (S. cerevisiae)
mm10_v2_chr1_-_185329331_185329401	0.150754	Hoxd1	ENSMUST00000027921.4|Iars2|ENSMUSG00000026618.5|isoleucine-tRNA synthetase 2, mitochondrial 	ENSMUST00000110975.1|Iars2|ENSMUSG00000026618.5|isoleucine-tRNA synthetase 2, mitochondrial 	ENSMUST00000110974.3|Iars2|ENSMUSG00000026618.5|isoleucine-tRNA synthetase 2, mitochondrial
mm10_v2_chr17_+_34931253_34931343	0.150247	Hoxd1	ENSMUST00000007253.5|Neu1|ENSMUSG00000007038.5|neuraminidase 1
mm10_v2_chr19_+_8802486_8802530	0.12879	Hoxd1	ENSMUST00000172175.1|Zbtb3|ENSMUSG00000071661.6|zinc finger and BTB domain containing 3
mm10_v2_chr10_+_75037066_75037100	0.110992	Hoxd1	ENSMUST00000147802.1|Rab36|ENSMUSG00000020175.7|RAB36, member RAS oncogene family 	ENSMUST00000020391.5|Rab36|ENSMUSG00000020175.7|RAB36, member RAS oncogene family
mm10_v2_chr12_+_16653470_16653486	0.0555078	Hoxd1	ENSMUST00000111064.1|Ntsr2|ENSMUSG00000020591.10|neurotensin receptor 2
mm10_v2_chr4_+_140700487_140700541	0.04734	Hoxd1	ENSMUST00000071169.2|Rcc2|ENSMUSG00000040945.7|regulator of chromosome condensation 2
mm10_v2_chr13_-_74807913_74807989	0.0275223	Hoxd1	ENSMUST00000065629.4|Cast|ENSMUSG00000021585.8|calpastatin
mm10_v2_chr16_+_18836573_18836583	0.00865756	Hoxd1	ENSMUST00000055413.6|2510002D24Rik|ENSMUSG00000071632.4|RIKEN cDNA 2510002D24 gene
mm10_v2_chr8_-_54724474_54724504	0.000968232	Hoxd1	ENSMUST00000175915.1|Wdr17|ENSMUSG00000039375.10|WD repeat domain 17
