mm10_v2_chrX_-_61185558_61185558	34.7208	Aire	ENSMUST00000166381.1|Cdr1|ENSMUSG00000090546.1|cerebellar degeneration related antigen 1
mm10_v2_chrM_+_7005_7022	2.88046	Aire	ENSMUST00000082405.1|mt-Co2|ENSMUSG00000064354.1|mitochondrially encoded cytochrome c oxidase II
mm10_v2_chrM_+_11734_11757	2.49283	Aire	ENSMUST00000082418.1|mt-Nd5|ENSMUSG00000064367.1|mitochondrially encoded NADH dehydrogenase 5
mm10_v2_chrM_-_14060_14074	2.27238	Aire	ENSMUST00000082419.1|mt-Nd6|ENSMUSG00000064368.1|mitochondrially encoded NADH dehydrogenase 6
mm10_v2_chrM_+_14138_14154	2.22815	Aire	ENSMUST00000082421.1|mt-Cytb|ENSMUSG00000064370.1|mitochondrially encoded cytochrome b
mm10_v2_chr16_+_36875119_36875205	2.15078	Aire	ENSMUST00000135406.1|Golgb1|ENSMUSG00000034243.10|golgi autoantigen, golgin subfamily b, macrogolgin 1 	ENSMUST00000023534.6|Golgb1|ENSMUSG00000078096.1|golgi autoantigen, golgin subfamily b, macrogolgin 1 	ENSMUST00000114812.1|Golgb1|ENSMUSG00000034243.10|golgi autoantigen, golgin subfamily b, macrogolgin 1 	ENSMUST00000134616.1|Golgb1|ENSMUSG00000034243.10|golgi autoantigen, golgin subfamily b, macrogolgin 1
mm10_v2_chrM_+_7759_7927	2.12737	Aire	ENSMUST00000082407.1|mt-Atp8|ENSMUSG00000064356.3|mitochondrially encoded ATP synthase 8 	ENSMUST00000082408.1|mt-Atp6|ENSMUSG00000064357.1|mitochondrially encoded ATP synthase 6
mm10_v2_chr5_-_84417359_84417389	1.91639	Aire	ENSMUST00000113401.1|Epha5|ENSMUSG00000029245.10|Eph receptor A5
mm10_v2_chr13_-_62371936_62371936	1.57374	Aire	ENSMUST00000107989.3|Gm3604|ENSMUSG00000094942.1|predicted gene 3604
mm10_v2_chrX_-_38576166_38576187	1.41425	Aire	ENSMUST00000050083.5|Cul4b|ENSMUSG00000031095.9|cullin 4B
mm10_v2_chr10_+_86021961_86021991	1.37509	Aire	ENSMUST00000130320.1|Fbxo7|ENSMUSG00000001786.8|F-box protein 7
mm10_v2_chr13_-_110280103_110280213	1.37497	Aire	ENSMUST00000167824.1|Rab3c|ENSMUSG00000021700.9|RAB3C, member RAS oncogene family
mm10_v2_chrX_-_38576189_38576204	1.34271	Aire	ENSMUST00000115118.1|Cul4b|ENSMUSG00000031095.9|cullin 4B
mm10_v2_chr5_+_43672289_43672326	1.32396	Aire	ENSMUST00000156034.1|Cc2d2a|ENSMUSG00000039765.9|coiled-coil and C2 domain containing 2A
mm10_v2_chr2_+_55435918_55435970	1.29878	Aire	ENSMUST00000067101.3|Kcnj3|ENSMUSG00000026824.5|potassium inwardly-rectifying channel, subfamily J, member 3
mm10_v2_chr10_-_111997204_111997279	1.27263	Aire	ENSMUST00000074805.5|Glipr1|ENSMUSG00000056888.5|GLI pathogenesis-related 1 (glioma)
mm10_v2_chr1_+_65186727_65186750	1.22392	Aire	ENSMUST00000097707.4|Pikfyve|ENSMUSG00000025949.9|phosphoinositide kinase, FYVE finger containing 	ENSMUST00000081154.7|Pikfyve|ENSMUSG00000025949.9|phosphoinositide kinase, FYVE finger containing
mm10_v2_chr4_-_19570073_19570117	1.20909	Aire	ENSMUST00000029885.4|Cpne3|ENSMUSG00000028228.5|copine III
mm10_v2_chr6_-_148896150_148896237	1.14685	Aire	ENSMUST00000072324.5|Caprin2|ENSMUSG00000030309.10|caprin family member 2 	ENSMUST00000111569.2|Caprin2|ENSMUSG00000030309.10|caprin family member 2
mm10_v2_chr14_+_124005355_124005355	1.14673	Aire	ENSMUST00000166105.1|Gm17615|ENSMUSG00000090286.1|predicted gene, 17615
mm10_v2_chr10_+_58446845_58446928	1.11965	Aire	ENSMUST00000003310.5|Ranbp2|ENSMUSG00000003226.6|RAN binding protein 2
mm10_v2_chr9_-_53667429_53667521	1.03342	Aire	ENSMUST00000166367.1|Cul5|ENSMUSG00000032030.10|cullin 5 	ENSMUST00000034529.7|Cul5|ENSMUSG00000032030.10|cullin 5
mm10_v2_chr9_-_97111117_97111159	0.958692	Aire	ENSMUST00000085206.4|Slc25a36|ENSMUSG00000032449.7|solute carrier family 25, member 36
mm10_v2_chr3_-_62506970_62507027	0.944196	Aire	ENSMUST00000029336.4|Dhx36|ENSMUSG00000027770.4|DEAH (Asp-Glu-Ala-His) box polypeptide 36
mm10_v2_chr5_+_24100578_24100669	0.917637	Aire	ENSMUST00000030841.5|Klhl7|ENSMUSG00000028986.6|kelch-like 7 	ENSMUST00000163409.1|Klhl7|ENSMUSG00000028986.6|kelch-like 7
mm10_v2_chr8_-_31739763_31739763	0.895769	Aire	ENSMUST00000178878.1|Gm5117|ENSMUSG00000093862.1|predicted gene 5117
mm10_v2_chr8_+_69808672_69808742	0.855745	Aire	ENSMUST00000036074.8|Gmip|ENSMUSG00000036246.8|Gem-interacting protein 	ENSMUST00000123453.1|Gmip|ENSMUSG00000036246.8|Gem-interacting protein
mm10_v2_chr16_-_91618986_91619026	0.853072	Aire	ENSMUST00000143058.1|Dnajc28|ENSMUSG00000039763.9|DnaJ (Hsp40) homolog, subfamily C, member 28 	ENSMUST00000049244.8|Dnajc28|ENSMUSG00000039763.9|DnaJ (Hsp40) homolog, subfamily C, member 28 	ENSMUST00000169982.1|Dnajc28|ENSMUSG00000039763.9|DnaJ (Hsp40) homolog, subfamily C, member 28 	ENSMUST00000133731.1|Dnajc28|ENSMUSG00000039763.9|DnaJ (Hsp40) homolog, subfamily C, member 28
mm10_v2_chr2_-_165400398_165400410	0.839435	Aire	ENSMUST00000029213.4|Ocstamp|ENSMUSG00000027670.4|osteoclast stimulatory transmembrane protein
mm10_v2_chr4_+_42714926_42714926	0.79511	Aire	ENSMUST00000178454.1|Gm21955|ENSMUSG00000095375.1|predicted gene, 21955
mm10_v2_chrX_+_48256854_48256865	0.718432	Aire	ENSMUST00000080713.4|Utp14a|ENSMUSG00000063785.6|UTP14, U3 small nucleolar ribonucleoprotein, homolog A (yeast)
mm10_v2_chr16_-_36874806_36874862	0.65376	Aire	ENSMUST00000075946.5|Eaf2|ENSMUSG00000022838.7|ELL associated factor 2
mm10_v2_chr3_-_95217877_95217918	0.648569	Aire	ENSMUST00000136139.1|Gabpb2|ENSMUSG00000038766.10|GA repeat binding protein, beta 2
mm10_v2_chr8_-_54529951_54530007	0.635551	Aire	ENSMUST00000067476.8|Spcs3|ENSMUSG00000054408.9|signal peptidase complex subunit 3 homolog (S. cerevisiae)
mm10_v2_chr2_+_172248492_172248492	0.627771	Aire	ENSMUST00000038532.1|Mc3r|ENSMUSG00000038537.1|melanocortin 3 receptor
mm10_v2_chr7_-_14562171_14562171	0.617347	Aire	ENSMUST00000181796.1|Vmn1r90|ENSMUSG00000097425.1|vomeronasal 1 receptor 90
mm10_v2_chr14_+_21481428_21481439	0.534202	Aire	ENSMUST00000182996.1|Kat6b|ENSMUSG00000021767.10|K(lysine) acetyltransferase 6B
mm10_v2_chr9_+_13662460_13662460	0.53215	Aire	ENSMUST00000177755.1|Maml2|ENSMUSG00000031925.10|mastermind like 2 (Drosophila)
mm10_v2_chr1_+_44119952_44119985	0.464502	Aire	ENSMUST00000114709.2|Bivm|ENSMUSG00000041684.5|basic, immunoglobulin-like variable motif containing
mm10_v2_chr2_-_121473993_121474067	0.460531	Aire	ENSMUST00000056732.3|Mfap1b|ENSMUSG00000048222.3|microfibrillar-associated protein 1B
mm10_v2_chr5_+_130369420_130369476	0.460323	Aire	ENSMUST00000086029.3|Caln1|ENSMUSG00000060371.6|calneuron 1
mm10_v2_chr8_-_4217261_4217312	0.436855	Aire	ENSMUST00000168386.2|BC068157|ENSMUSG00000064125.8|cDNA sequence BC068157
mm10_v2_chr5_-_135251209_135251242	0.42664	Aire	ENSMUST00000062572.2|Fzd9|ENSMUSG00000049551.2|frizzled homolog 9 (Drosophila)
mm10_v2_chr9_+_64235201_64235201	0.423368	Aire	ENSMUST00000039011.3|Uchl4|ENSMUSG00000035337.3|ubiquitin carboxyl-terminal esterase L4
mm10_v2_chr13_+_49504774_49504816	0.394883	Aire	ENSMUST00000051504.7|Ecm2|ENSMUSG00000043631.7|extracellular matrix protein 2, female organ and adipocyte specific
mm10_v2_chr8_-_4216912_4217003	0.394031	Aire	ENSMUST00000177491.1|BC068157|ENSMUSG00000064125.8|cDNA sequence BC068157
mm10_v2_chr3_-_116968969_116969004	0.364513	Aire	ENSMUST00000143611.1|Palmd|ENSMUSG00000033377.8|palmdelphin 	ENSMUST00000040097.7|Palmd|ENSMUSG00000033377.8|palmdelphin
mm10_v2_chr17_-_59013264_59013372	0.334041	Aire	ENSMUST00000174122.1|Nudt12|ENSMUSG00000024228.6|nudix (nucleoside diphosphate linked moiety X)-type motif 12 	ENSMUST00000025065.5|Nudt12|ENSMUSG00000024228.6|nudix (nucleoside diphosphate linked moiety X)-type motif 12
mm10_v2_chr9_-_113708209_113708259	0.309825	Aire	ENSMUST00000111861.3|Pdcd6ip|ENSMUSG00000032504.9|programmed cell death 6 interacting protein 	ENSMUST00000035086.6|Pdcd6ip|ENSMUSG00000032504.9|programmed cell death 6 interacting protein
mm10_v2_chr8_-_109962127_109962213	0.30649	Aire	ENSMUST00000001722.7|Marveld3|ENSMUSG00000001672.8|MARVEL (membrane-associating) domain containing 3 	ENSMUST00000051430.6|Marveld3|ENSMUSG00000001672.8|MARVEL (membrane-associating) domain containing 3
mm10_v2_chr3_+_88835231_88835231	0.280649	Aire	ENSMUST00000107498.2|Gon4l|ENSMUSG00000054199.10|gon-4-like (C.elegans)
mm10_v2_chr8_+_111643425_111643450	0.279341	Aire	ENSMUST00000077791.6|Zfp1|ENSMUSG00000055835.9|zinc finger protein 1
mm10_v2_chr2_-_134644019_134644042	0.276414	Aire	ENSMUST00000110120.1|Tmx4|ENSMUSG00000034723.5|thioredoxin-related transmembrane protein 4
mm10_v2_chr10_+_52358767_52358767	0.269859	Aire	ENSMUST00000180473.1|Gm26741|ENSMUSG00000097704.1|predicted gene, 26741
mm10_v2_chr4_+_154869585_154869636	0.244085	Aire	ENSMUST00000079269.7|Mmel1|ENSMUSG00000058183.8|membrane metallo-endopeptidase-like 1 	ENSMUST00000163732.1|Mmel1|ENSMUSG00000058183.8|membrane metallo-endopeptidase-like 1 	ENSMUST00000080559.6|Mmel1|ENSMUSG00000058183.8|membrane metallo-endopeptidase-like 1
mm10_v2_chr17_-_53463315_53463340	0.230414	Aire	ENSMUST00000024725.4|Efhb|ENSMUSG00000023931.4|EF hand domain family, member B
mm10_v2_chr12_+_4843303_4843419	0.230408	Aire	ENSMUST00000053034.4|BC068281|ENSMUSG00000051721.4|cDNA sequence BC068281
mm10_v2_chr5_+_29378604_29378699	0.222787	Aire	ENSMUST00000181005.1|4632411P08Rik|ENSMUSG00000097561.1|RIKEN cDNA 4632411P08 gene
mm10_v2_chr8_-_4217133_4217168	0.219043	Aire	ENSMUST00000175906.1|BC068157|ENSMUSG00000064125.8|cDNA sequence BC068157
mm10_v2_chr2_-_134644125_134644145	0.209901	Aire	ENSMUST00000038228.4|Tmx4|ENSMUSG00000034723.5|thioredoxin-related transmembrane protein 4
mm10_v2_chr12_+_10390756_10390836	0.205528	Aire	ENSMUST00000020947.5|Rdh14|ENSMUSG00000020621.5|retinol dehydrogenase 14 (all-trans and 9-cis)
mm10_v2_chr3_-_89411781_89411894	0.190061	Aire	ENSMUST00000107429.3|Flad1|ENSMUSG00000042642.7|RFad1, flavin adenine dinucleotide synthetase, homolog (yeast) 	ENSMUST00000129308.2|Flad1|ENSMUSG00000042642.7|RFad1, flavin adenine dinucleotide synthetase, homolog (yeast) 	ENSMUST00000107426.1|Flad1|ENSMUSG00000042642.7|RFad1, flavin adenine dinucleotide synthetase, homolog (yeast) 	ENSMUST00000050398.4|Flad1|ENSMUSG00000042642.7|RFad1, flavin adenine dinucleotide synthetase, homolog (yeast) 	ENSMUST00000162701.1|Flad1|ENSMUSG00000042642.7|RFad1, flavin adenine dinucleotide synthetase, homolog (yeast)
mm10_v2_chr9_+_76014855_76015055	0.166724	Aire	ENSMUST00000008052.6|Hmgcll1|ENSMUSG00000007908.8|3-hydroxymethyl-3-methylglutaryl-Coenzyme A lyase-like 1 	ENSMUST00000183425.1|Hmgcll1|ENSMUSG00000007908.8|3-hydroxymethyl-3-methylglutaryl-Coenzyme A lyase-like 1 	ENSMUST00000183979.1|Hmgcll1|ENSMUSG00000007908.8|3-hydroxymethyl-3-methylglutaryl-Coenzyme A lyase-like 1 	ENSMUST00000117981.2|Hmgcll1|ENSMUSG00000007908.8|3-hydroxymethyl-3-methylglutaryl-Coenzyme A lyase-like 1
mm10_v2_chr12_-_36156781_36156825	0.160672	Aire	ENSMUST00000020856.4|Bzw2|ENSMUSG00000020547.4|basic leucine zipper and W2 domains 2
mm10_v2_chr2_-_134644079_134644109	0.152107	Aire	ENSMUST00000110119.1|Tmx4|ENSMUSG00000034723.5|thioredoxin-related transmembrane protein 4
mm10_v2_chr4_+_11758147_11758220	0.143103	Aire	ENSMUST00000029871.5|Cdh17|ENSMUSG00000028217.5|cadherin 17 	ENSMUST00000108303.1|Cdh17|ENSMUSG00000028217.5|cadherin 17
mm10_v2_chr4_-_46566432_46566471	0.13361	Aire	ENSMUST00000030021.7|Coro2a|ENSMUSG00000028337.8|coronin, actin binding protein 2A 	ENSMUST00000107757.1|Coro2a|ENSMUSG00000028337.8|coronin, actin binding protein 2A
mm10_v2_chr17_-_6961156_6961156	0.133366	Aire	ENSMUST00000063683.6|Tagap1|ENSMUSG00000052031.7|T cell activation GTPase activating protein 1
mm10_v2_chr2_-_94010807_94010823	0.132712	Aire	ENSMUST00000111240.1|Alkbh3|ENSMUSG00000040174.8|alkB, alkylation repair homolog 3 (E. coli)
mm10_v2_chr10_+_3872667_3872788	0.13164	Aire	ENSMUST00000136671.1|Plekhg1|ENSMUSG00000040624.11|pleckstrin homology domain containing, family G (with RhoGef domain) member 1 	ENSMUST00000042438.6|Plekhg1|ENSMUSG00000040624.11|pleckstrin homology domain containing, family G (with RhoGef domain) member 1
mm10_v2_chr3_+_54481429_54481429	0.128922	Aire	ENSMUST00000091130.3|Gm5641|ENSMUSG00000069014.3|predicted gene 5641
mm10_v2_chr5_-_100373484_100373527	0.0954181	Aire	ENSMUST00000182433.1|Sec31a|ENSMUSG00000035325.10|Sec31 homolog A (S. cerevisiae)
mm10_v2_chr11_+_69914179_69914193	0.0919587	Aire	ENSMUST00000057884.5|Gps2|ENSMUSG00000023170.8|G protein pathway suppressor 2
mm10_v2_chr12_+_36157124_36157238	0.0820163	Aire	ENSMUST00000041640.3|Ankmy2|ENSMUSG00000036188.3|ankyrin repeat and MYND domain containing 2
mm10_v2_chr2_-_94010729_94010764	0.079681	Aire	ENSMUST00000040005.6|Alkbh3|ENSMUSG00000040174.8|alkB, alkylation repair homolog 3 (E. coli) 	ENSMUST00000126378.1|Alkbh3|ENSMUSG00000040174.8|alkB, alkylation repair homolog 3 (E. coli)
mm10_v2_chr6_-_91515878_91515889	0.071554	Aire	ENSMUST00000032182.3|Xpc|ENSMUSG00000030094.7|xeroderma pigmentosum, complementation group C
mm10_v2_chr12_-_78983476_78983493	0.0597486	Aire	ENSMUST00000070174.7|Tmem229b|ENSMUSG00000046157.7|transmembrane protein 229B
mm10_v2_chr19_-_28963863_28963908	0.0507527	Aire	ENSMUST00000161813.1|4430402I18Rik|ENSMUSG00000064202.9|RIKEN cDNA 4430402I18 gene
mm10_v2_chr10_-_130280218_130280242	0.0309535	Aire	ENSMUST00000061571.3|Neurod4|ENSMUSG00000048015.3|neurogenic differentiation 4
mm10_v2_chr7_+_45896941_45897101	0.017319	Aire	ENSMUST00000069772.7|Tmem143|ENSMUSG00000002781.11|transmembrane protein 143 	ENSMUST00000107716.1|Tmem143|ENSMUSG00000002781.11|transmembrane protein 143
mm10_v2_chr10_+_53337686_53337724	0.0089731	Aire	ENSMUST00000046221.6|Pln|ENSMUSG00000038583.6|phospholamban 	ENSMUST00000163319.1|Pln|ENSMUSG00000038583.6|phospholamban
