mm10_v2_chr6_-_23248264_23248390	8.45346	Brca1	ENSMUST00000031709.5|Fezf1|ENSMUSG00000029697.5|Fez family zinc finger 1
mm10_v2_chr11_+_44617310_44617336	2.63909	Brca1	ENSMUST00000081265.5|Ebf1|ENSMUSG00000057098.8|early B cell factor 1 	ENSMUST00000101326.3|Ebf1|ENSMUSG00000057098.8|early B cell factor 1 	ENSMUST00000109268.1|Ebf1|ENSMUSG00000057098.8|early B cell factor 1
mm10_v2_chr17_-_70853482_70853546	1.63916	Brca1	ENSMUST00000118283.1|Tgif1|ENSMUSG00000047407.11|TGFB-induced factor homeobox 1
mm10_v2_chr3_+_87906321_87906356	1.50937	Brca1	ENSMUST00000005017.8|Hdgf|ENSMUSG00000004897.10|hepatoma-derived growth factor
mm10_v2_chr7_-_144939823_144939869	1.48331	Brca1	ENSMUST00000093962.4|Ccnd1|ENSMUSG00000070348.4|cyclin D1
mm10_v2_chr1_-_75278345_75278440	1.44638	Brca1	ENSMUST00000039534.4|Resp18|ENSMUSG00000033061.9|regulated endocrine-specific protein 18
mm10_v2_chr11_-_98625661_98625661	1.42949	Brca1	ENSMUST00000104933.1|Gm12355|ENSMUSG00000078134.1|predicted gene 12355
mm10_v2_chr7_+_51878967_51879000	1.31243	Brca1	ENSMUST00000051912.6|Gas2|ENSMUSG00000030498.8|growth arrest specific 2
mm10_v2_chr2_-_105399286_105399319	1.29855	Brca1	ENSMUST00000006128.6|Rcn1|ENSMUSG00000005973.6|reticulocalbin 1
mm10_v2_chr18_-_47333311_47333373	1.29248	Brca1	ENSMUST00000126684.1|Sema6a|ENSMUSG00000019647.10|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A 	ENSMUST00000156422.1|Sema6a|ENSMUSG00000019647.10|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A
mm10_v2_chr11_-_101171302_101171353	1.28968	Brca1	ENSMUST00000164474.1|Plekhh3|ENSMUSG00000035172.9|pleckstrin homology domain containing, family H (with MyTH4 domain) member 3 	ENSMUST00000043397.7|Plekhh3|ENSMUSG00000035172.9|pleckstrin homology domain containing, family H (with MyTH4 domain) member 3
mm10_v2_chr11_-_106998483_106998491	1.23772	Brca1	ENSMUST00000124541.1|Kpna2|ENSMUSG00000018362.8|karyopherin (importin) alpha 2
mm10_v2_chr1_+_74791516_74791516	1.20719	Brca1	ENSMUST00000006718.8|Wnt10a|ENSMUSG00000026167.8|wingless related MMTV integration site 10a
mm10_v2_chr11_-_102230091_102230124	1.17675	Brca1	ENSMUST00000008999.5|Hdac5|ENSMUSG00000008855.11|histone deacetylase 5
mm10_v2_chr1_+_135729147_135729234	1.17333	Brca1	ENSMUST00000027677.7|Csrp1|ENSMUSG00000026421.8|cysteine and glycine-rich protein 1
mm10_v2_chr7_-_102100227_102100258	1.16972	Brca1	ENSMUST00000106937.1|Art5|ENSMUSG00000070424.5|ADP-ribosyltransferase 5
mm10_v2_chr9_-_37657189_37657312	1.16962	Brca1	ENSMUST00000117654.1|Tbrg1|ENSMUSG00000011114.11|transforming growth factor beta regulated gene 1
mm10_v2_chr11_-_102230127_102230166	1.13343	Brca1	ENSMUST00000107150.1|Hdac5|ENSMUSG00000008855.11|histone deacetylase 5 	ENSMUST00000156337.1|Hdac5|ENSMUSG00000008855.11|histone deacetylase 5 	ENSMUST00000107151.2|Hdac5|ENSMUSG00000008855.11|histone deacetylase 5 	ENSMUST00000107152.2|Hdac5|ENSMUSG00000008855.11|histone deacetylase 5
mm10_v2_chr8_-_70700070_70700088	1.13112	Brca1	ENSMUST00000116172.1|Gm11175|ENSMUSG00000080058.1|predicted gene 11175
mm10_v2_chr17_-_6655939_6655939	1.13027	Brca1	ENSMUST00000179554.1|Dynlt1f|ENSMUSG00000095677.1|dynein light chain Tctex-type 1F
mm10_v2_chr5_+_138187485_138187521	1.10913	Brca1	ENSMUST00000110934.2|Cnpy4|ENSMUSG00000036968.9|canopy 4 homolog (zebrafish)
mm10_v2_chr14_-_67715585_67715681	1.10831	Brca1	ENSMUST00000163100.1|Cdca2|ENSMUSG00000048922.12|cell division cycle associated 2 	ENSMUST00000132705.1|Cdca2|ENSMUSG00000048922.12|cell division cycle associated 2 	ENSMUST00000124045.1|Cdca2|ENSMUSG00000048922.12|cell division cycle associated 2
mm10_v2_chr1_+_192190771_192190821	1.10576	Brca1	ENSMUST00000078470.5|Kcnh1|ENSMUSG00000058248.6|potassium voltage-gated channel, subfamily H (eag-related), member 1 	ENSMUST00000110844.1|Kcnh1|ENSMUSG00000058248.6|potassium voltage-gated channel, subfamily H (eag-related), member 1
mm10_v2_chr19_-_24225015_24225033	1.10533	Brca1	ENSMUST00000099558.4|Tjp2|ENSMUSG00000024812.9|tight junction protein 2
mm10_v2_chr5_+_136953246_136953406	1.03175	Brca1	ENSMUST00000111094.1|Fis1|ENSMUSG00000019054.7|fission 1 (mitochondrial outer membrane) homolog (yeast) 	ENSMUST00000111097.1|Fis1|ENSMUSG00000019054.7|fission 1 (mitochondrial outer membrane) homolog (yeast)
mm10_v2_chr8_+_26977336_26977398	1.02796	Brca1	ENSMUST00000154256.1|Zfp703|ENSMUSG00000085795.1|zinc finger protein 703 	ENSMUST00000127097.1|Zfp703|ENSMUSG00000085795.1|zinc finger protein 703
mm10_v2_chr8_+_25017211_25017305	1.02583	Brca1	ENSMUST00000033961.5|Tm2d2|ENSMUSG00000031556.5|TM2 domain containing 2
mm10_v2_chr3_+_5218546_5218561	1.01849	Brca1	ENSMUST00000026284.6|Zfhx4|ENSMUSG00000025255.12|zinc finger homeodomain 4
mm10_v2_chr15_+_102460076_102460108	1.01641	Brca1	ENSMUST00000164688.1|Prr13|ENSMUSG00000023048.7|proline rich 13
mm10_v2_chr5_-_138187177_138187237	0.996487	Brca1	ENSMUST00000110937.1|Taf6|ENSMUSG00000036980.7|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor 	ENSMUST00000139276.1|Taf6|ENSMUSG00000036980.7|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor 	ENSMUST00000048698.7|Taf6|ENSMUSG00000036980.7|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor 	ENSMUST00000123415.1|Taf6|ENSMUSG00000036980.7|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor
mm10_v2_chr2_+_174330006_174330126	0.95217	Brca1	ENSMUST00000109085.1|Gnas|ENSMUSG00000027523.13|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus 	ENSMUST00000109087.1|Gnas|ENSMUSG00000027523.13|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus 	ENSMUST00000109084.1|Gnas|ENSMUSG00000027523.13|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus
mm10_v2_chr12_+_52097737_52097775	0.943445	Brca1	ENSMUST00000040090.9|Nubpl|ENSMUSG00000035142.12|nucleotide binding protein-like
mm10_v2_chr12_-_10900296_10900318	0.932745	Brca1	ENSMUST00000085735.2|Pgk1-rs7|ENSMUSG00000066632.2|phosphoglycerate kinase-1, related sequence-7
mm10_v2_chr3_+_5218516_5218544	0.920039	Brca1	ENSMUST00000175866.1|Zfhx4|ENSMUSG00000025255.12|zinc finger homeodomain 4
mm10_v2_chrM_+_8600_8616	0.878117	Brca1	ENSMUST00000082409.1|mt-Co3|ENSMUSG00000064358.1|mitochondrially encoded cytochrome c oxidase III
mm10_v2_chr17_+_6430112_6430204	0.864138	Brca1	ENSMUST00000179569.1|Dynlt1b|ENSMUSG00000096255.1|dynein light chain Tctex-type 1B
mm10_v2_chr19_-_10203880_10204169	0.860154	Brca1	ENSMUST00000142241.1|Fen1|ENSMUSG00000024742.9|flap structure specific endonuclease 1 	ENSMUST00000116542.2|Fen1|ENSMUSG00000024742.9|flap structure specific endonuclease 1 	ENSMUST00000025651.5|Fen1|ENSMUSG00000024742.9|flap structure specific endonuclease 1 	ENSMUST00000156291.1|Fen1|ENSMUSG00000024742.9|flap structure specific endonuclease 1
mm10_v2_chr10_-_42583628_42583639	0.844918	Brca1	ENSMUST00000019938.4|Nr2e1|ENSMUSG00000019803.5|nuclear receptor subfamily 2, group E, member 1
mm10_v2_chr13_-_100775844_100775899	0.837309	Brca1	ENSMUST00000075550.3|Cenph|ENSMUSG00000045273.8|centromere protein H
mm10_v2_chrM_+_9452_9468	0.804343	Brca1	ENSMUST00000082411.1|mt-Nd3|ENSMUSG00000064360.1|mitochondrially encoded NADH dehydrogenase 3
mm10_v2_chr3_-_61365951_61365951	0.790838	Brca1	ENSMUST00000066298.2|B430305J03Rik|ENSMUSG00000053706.2|RIKEN cDNA B430305J03 gene
mm10_v2_chr2_-_155582656_155582668	0.782349	Brca1	ENSMUST00000126322.1|Gss|ENSMUSG00000027610.11|glutathione synthetase
mm10_v2_chr5_+_146833106_146833210	0.780449	Brca1	ENSMUST00000075453.2|Rpl21|ENSMUSG00000041453.6|ribosomal protein L21 	ENSMUST00000099272.2|Rpl21|ENSMUSG00000041453.6|ribosomal protein L21
mm10_v2_chr6_+_14901344_14901364	0.758122	Brca1	ENSMUST00000115477.1|Foxp2|ENSMUSG00000029563.10|forkhead box P2
mm10_v2_chr16_+_44394771_44394804	0.749939	Brca1	ENSMUST00000099742.2|Wdr52|ENSMUSG00000071550.7|WD repeat domain 52
mm10_v2_chrX_-_101222426_101222563	0.738733	Brca1	ENSMUST00000120389.1|Snx12|ENSMUSG00000046032.10|sorting nexin 12 	ENSMUST00000156473.1|Snx12|ENSMUSG00000046032.10|sorting nexin 12 	ENSMUST00000077876.3|Snx12|ENSMUSG00000046032.10|sorting nexin 12
mm10_v2_chr5_+_146832890_146832947	0.731828	Brca1	ENSMUST00000035983.5|Rpl21|ENSMUSG00000041453.6|ribosomal protein L21
mm10_v2_chr19_-_32466575_32466575	0.71648	Brca1	ENSMUST00000078034.3|Rpl9-ps6|ENSMUSG00000062456.3|ribosomal protein L9, pseudogene 6
mm10_v2_chr12_-_84617326_84617466	0.71081	Brca1	ENSMUST00000021666.4|Abcd4|ENSMUSG00000021240.5|ATP-binding cassette, sub-family D (ALD), member 4
mm10_v2_chr18_-_15063560_15063617	0.696615	Brca1	ENSMUST00000168989.1|Kctd1|ENSMUSG00000036225.8|potassium channel tetramerisation domain containing 1
mm10_v2_chr3_+_87930256_87930350	0.694453	Brca1	ENSMUST00000055984.6|Isg20l2|ENSMUSG00000048039.8|interferon stimulated exonuclease gene 20-like 2
mm10_v2_chr11_+_6291660_6291687	0.680778	Brca1	ENSMUST00000101554.2|Ogdh|ENSMUSG00000020456.11|oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide) 	ENSMUST00000093350.3|Ogdh|ENSMUSG00000020456.11|oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide)
mm10_v2_chr6_-_120357440_120357489	0.668762	Brca1	ENSMUST00000112703.1|Ccdc77|ENSMUSG00000030177.8|coiled-coil domain containing 77
mm10_v2_chr13_-_95891905_95891929	0.656315	Brca1	ENSMUST00000068603.6|Iqgap2|ENSMUSG00000021676.9|IQ motif containing GTPase activating protein 2
mm10_v2_chr6_-_122340499_122340510	0.646394	Brca1	ENSMUST00000160843.1|Phc1|ENSMUSG00000040669.8|polyhomeotic-like 1 (Drosophila)
mm10_v2_chr9_-_109082372_109082414	0.632199	Brca1	ENSMUST00000167504.1|Tma7|ENSMUSG00000091537.1|translational machinery associated 7 homolog (S. cerevisiae)
mm10_v2_chr3_-_138131356_138131381	0.62742	Brca1	ENSMUST00000029805.8|Mttp|ENSMUSG00000028158.8|microsomal triglyceride transfer protein
mm10_v2_chr3_+_5218589_5218614	0.60984	Brca1	ENSMUST00000177488.1|Zfhx4|ENSMUSG00000025255.12|zinc finger homeodomain 4
mm10_v2_chr12_-_69159109_69159186	0.609687	Brca1	ENSMUST00000037023.8|Rps29|ENSMUSG00000034892.8|ribosomal protein S29
mm10_v2_chr17_-_28350747_28350820	0.607659	Brca1	ENSMUST00000080572.7|Tead3|ENSMUSG00000002249.11|TEA domain family member 3 	ENSMUST00000156862.1|Tead3|ENSMUSG00000002249.11|TEA domain family member 3
mm10_v2_chr7_-_102099932_102099943	0.606035	Brca1	ENSMUST00000106934.1|Art5|ENSMUSG00000070424.5|ADP-ribosyltransferase 5
mm10_v2_chr13_-_98890974_98891035	0.599019	Brca1	ENSMUST00000179301.1|Tnpo1|ENSMUSG00000009470.10|transportin 1 	ENSMUST00000179271.1|Tnpo1|ENSMUSG00000009470.10|transportin 1
mm10_v2_chr2_-_28916668_28916668	0.596823	Brca1	ENSMUST00000113847.1|Barhl1|ENSMUSG00000026805.8|BarH-like 1 (Drosophila)
mm10_v2_chr1_+_182124737_182124800	0.590798	Brca1	ENSMUST00000111018.1|Srp9|ENSMUSG00000026511.6|signal recognition particle 9 	ENSMUST00000027792.5|Srp9|ENSMUSG00000026511.6|signal recognition particle 9
mm10_v2_chr6_-_120357422_120357435	0.587833	Brca1	ENSMUST00000032283.5|Ccdc77|ENSMUSG00000030177.8|coiled-coil domain containing 77
mm10_v2_chr19_+_44562841_44562879	0.57506	Brca1	ENSMUST00000040455.4|Hif1an|ENSMUSG00000036450.4|hypoxia-inducible factor 1, alpha subunit inhibitor
mm10_v2_chr6_-_120357342_120357400	0.572792	Brca1	ENSMUST00000163827.1|Ccdc77|ENSMUSG00000030177.8|coiled-coil domain containing 77
mm10_v2_chr6_-_125191535_125191620	0.561602	Brca1	ENSMUST00000043848.4|Ncapd2|ENSMUSG00000038252.7|non-SMC condensin I complex, subunit D2
mm10_v2_chr13_-_98891036_98891063	0.555537	Brca1	ENSMUST00000109399.2|Tnpo1|ENSMUSG00000009470.10|transportin 1
mm10_v2_chr6_-_122340525_122340561	0.526292	Brca1	ENSMUST00000112600.2|Phc1|ENSMUSG00000040669.8|polyhomeotic-like 1 (Drosophila)
mm10_v2_chr13_+_100651328_100651397	0.524674	Brca1	ENSMUST00000022135.8|Taf9|ENSMUSG00000078941.3|TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor 	ENSMUST00000084721.6|Taf9|ENSMUSG00000052293.8|TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor
mm10_v2_chr7_+_82337218_82337218	0.517632	Brca1	ENSMUST00000173828.1|Adamtsl3|ENSMUSG00000070469.5|ADAMTS-like 3
mm10_v2_chr5_-_135064063_135064116	0.514777	Brca1	ENSMUST00000111205.1|Wbscr22|ENSMUSG00000005378.11|Williams Beuren syndrome chromosome region 22 	ENSMUST00000141309.1|Wbscr22|ENSMUSG00000005378.11|Williams Beuren syndrome chromosome region 22
mm10_v2_chr10_-_128923948_128924035	0.5096	Brca1	ENSMUST00000131271.1|Bloc1s1|ENSMUSG00000090247.1|biogenesis of lysosome-related organelles complex-1, subunit 1
mm10_v2_chrX_+_150589907_150589996	0.506051	Brca1	ENSMUST00000080884.4|Pfkfb1|ENSMUSG00000025271.7|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1
mm10_v2_chr19_+_6047081_6047104	0.502593	Brca1	ENSMUST00000025723.8|Syvn1|ENSMUSG00000024807.11|synovial apoptosis inhibitor 1, synoviolin
mm10_v2_chr15_-_97020322_97020336	0.501311	Brca1	ENSMUST00000166223.1|Slc38a4|ENSMUSG00000022464.7|solute carrier family 38, member 4
mm10_v2_chr7_+_101896817_101896961	0.485126	Brca1	ENSMUST00000143835.1|Anapc15|ENSMUSG00000030649.11|anaphase prompoting complex C subunit 15
mm10_v2_chr8_+_84872105_84872112	0.475384	Brca1	ENSMUST00000136026.1|Syce2|ENSMUSG00000003824.6|synaptonemal complex central element protein 2 	ENSMUST00000170296.1|Syce2|ENSMUSG00000003824.6|synaptonemal complex central element protein 2
mm10_v2_chr11_+_6291607_6291655	0.475267	Brca1	ENSMUST00000003461.8|Ogdh|ENSMUSG00000020456.11|oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide)
mm10_v2_chr12_-_24493656_24493656	0.468877	Brca1	ENSMUST00000073088.2|Gm16372|ENSMUSG00000057160.2|predicted pseudogene 16372
mm10_v2_chr19_+_55741810_55741842	0.451304	Brca1	ENSMUST00000111657.3|Tcf7l2|ENSMUSG00000024985.12|transcription factor 7 like 2, T cell specific, HMG box 	ENSMUST00000061496.9|Tcf7l2|ENSMUSG00000024985.12|transcription factor 7 like 2, T cell specific, HMG box 	ENSMUST00000041717.7|Tcf7l2|ENSMUSG00000024985.12|transcription factor 7 like 2, T cell specific, HMG box 	ENSMUST00000111662.4|Tcf7l2|ENSMUSG00000024985.12|transcription factor 7 like 2, T cell specific, HMG box
mm10_v2_chr17_-_28350600_28350681	0.43486	Brca1	ENSMUST00000114799.1|Tead3|ENSMUSG00000002249.11|TEA domain family member 3
mm10_v2_chr16_-_11066141_11066165	0.417813	Brca1	ENSMUST00000162323.1|Litaf|ENSMUSG00000022500.8|LPS-induced TN factor
mm10_v2_chr12_+_103388656_103388723	0.413738	Brca1	ENSMUST00000101094.2|Otub2|ENSMUSG00000021203.9|OTU domain, ubiquitin aldehyde binding 2 	ENSMUST00000021620.6|Otub2|ENSMUSG00000021203.9|OTU domain, ubiquitin aldehyde binding 2
mm10_v2_chr1_+_172148015_172148048	0.410115	Brca1	ENSMUST00000074144.5|Dcaf8|ENSMUSG00000026554.10|DDB1 and CUL4 associated factor 8
mm10_v2_chr17_-_15498263_15498276	0.404345	Brca1	ENSMUST00000014913.9|Psmb1|ENSMUSG00000014769.9|proteasome (prosome, macropain) subunit, beta type 1
mm10_v2_chr18_+_7869707_7869737	0.402786	Brca1	ENSMUST00000166062.1|Wac|ENSMUSG00000024283.8|WW domain containing adaptor with coiled-coil 	ENSMUST00000169010.1|Wac|ENSMUSG00000024283.8|WW domain containing adaptor with coiled-coil
mm10_v2_chr8_-_107263248_107263248	0.396512	Brca1	ENSMUST00000080443.6|Rps18-ps3|ENSMUSG00000057657.3|ribosomal protein S18, pseudogene 3
mm10_v2_chrX_+_74309089_74309161	0.387932	Brca1	ENSMUST00000130581.1|Gdi1|ENSMUSG00000015291.4|guanosine diphosphate (GDP) dissociation inhibitor 1
mm10_v2_chr11_+_59306920_59306935	0.386816	Brca1	ENSMUST00000000128.3|Wnt9a|ENSMUSG00000000126.5|wingless-type MMTV integration site 9A 	ENSMUST00000108783.3|Wnt9a|ENSMUSG00000000126.5|wingless-type MMTV integration site 9A
mm10_v2_chr4_-_131838231_131838291	0.381306	Brca1	ENSMUST00000030741.2|Ptpru|ENSMUSG00000028909.11|protein tyrosine phosphatase, receptor type, U 	ENSMUST00000105987.2|Ptpru|ENSMUSG00000028909.11|protein tyrosine phosphatase, receptor type, U
mm10_v2_chr15_-_82016134_82016170	0.370698	Brca1	ENSMUST00000152227.1|Desi1|ENSMUSG00000022472.10|desumoylating isopeptidase 1
mm10_v2_chr10_-_42276688_42276743	0.352637	Brca1	ENSMUST00000175881.1|Foxo3|ENSMUSG00000048756.5|forkhead box O3 	ENSMUST00000056974.3|Foxo3|ENSMUSG00000048756.5|forkhead box O3
mm10_v2_chrX_+_150594420_150594478	0.346527	Brca1	ENSMUST00000112713.2|Pfkfb1|ENSMUSG00000025271.7|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1
mm10_v2_chr7_-_64872993_64873037	0.34648	Brca1	ENSMUST00000094331.2|Ndnl2|ENSMUSG00000070520.2|necdin-like 2
mm10_v2_chr10_-_13388830_13388970	0.342425	Brca1	ENSMUST00000079698.5|Phactr2|ENSMUSG00000062866.9|phosphatase and actin regulator 2
mm10_v2_chr19_+_45560569_45560644	0.340232	Brca1	ENSMUST00000047057.7|Dpcd|ENSMUSG00000041035.7|deleted in primary ciliary dyskinesia
mm10_v2_chr7_-_133122615_133122762	0.334984	Brca1	ENSMUST00000167218.1|Ctbp2|ENSMUSG00000030970.10|C-terminal binding protein 2
mm10_v2_chr19_-_7295394_7295468	0.309126	Brca1	ENSMUST00000025921.8|Mark2|ENSMUSG00000024969.9|MAP/microtubule affinity-regulating kinase 2
mm10_v2_chr7_-_4996095_4996116	0.304727	Brca1	ENSMUST00000108572.1|Zfp579|ENSMUSG00000051550.10|zinc finger protein 579
mm10_v2_chr4_-_116708312_116708406	0.302957	Brca1	ENSMUST00000030453.4|Mmachc|ENSMUSG00000028690.4|methylmalonic aciduria cblC type, with homocystinuria
mm10_v2_chr17_+_7945653_7945653	0.302562	Brca1	ENSMUST00000097423.2|Rsph3a|ENSMUSG00000073471.2|radial spoke 3A homolog (Chlamydomonas)
mm10_v2_chr7_-_35056467_35056556	0.299668	Brca1	ENSMUST00000130491.1|Cebpg|ENSMUSG00000056216.8|CCAAT/enhancer binding protein (C/EBP), gamma
mm10_v2_chr12_+_108894272_108894317	0.293597	Brca1	ENSMUST00000167816.1|Wdr25|ENSMUSG00000040877.9|WD repeat domain 25 	ENSMUST00000047115.7|Wdr25|ENSMUSG00000040877.9|WD repeat domain 25
mm10_v2_chr9_+_44773027_44773100	0.291436	Brca1	ENSMUST00000125877.1|Ift46|ENSMUSG00000002031.5|intraflagellar transport 46
mm10_v2_chr17_-_47611449_47611544	0.290811	Brca1	ENSMUST00000024783.8|Bysl|ENSMUSG00000023988.8|bystin-like
mm10_v2_chr10_-_13388753_13388774	0.288015	Brca1	ENSMUST00000105546.1|Phactr2|ENSMUSG00000062866.9|phosphatase and actin regulator 2
mm10_v2_chr14_-_52305056_52305130	0.281584	Brca1	ENSMUST00000174853.1|Mettl3|ENSMUSG00000022160.11|methyltransferase like 3 	ENSMUST00000022767.9|Mettl3|ENSMUSG00000022160.11|methyltransferase like 3
mm10_v2_chr11_+_97703394_97703455	0.274738	Brca1	ENSMUST00000103147.4|Psmb3|ENSMUSG00000069744.7|proteasome (prosome, macropain) subunit, beta type 3
mm10_v2_chr19_-_12765447_12765632	0.271788	Brca1	ENSMUST00000112933.1|Cntf|ENSMUSG00000079415.2|ciliary neurotrophic factor
mm10_v2_chr7_-_44375006_44375035	0.270841	Brca1	ENSMUST00000107933.1|1700008O03Rik|ENSMUSG00000008028.9|RIKEN cDNA 1700008O03 gene
mm10_v2_chr17_-_33685386_33685410	0.269832	Brca1	ENSMUST00000139302.1|Hnrnpm|ENSMUSG00000059208.8|heterogeneous nuclear ribonucleoprotein M 	ENSMUST00000087582.5|Hnrnpm|ENSMUSG00000059208.8|heterogeneous nuclear ribonucleoprotein M 	ENSMUST00000114385.2|Hnrnpm|ENSMUSG00000059208.8|heterogeneous nuclear ribonucleoprotein M
mm10_v2_chr4_-_98817537_98817706	0.266072	Brca1	ENSMUST00000102790.3|Kank4|ENSMUSG00000035407.8|KN motif and ankyrin repeat domains 4
mm10_v2_chr10_-_42276744_42276763	0.261779	Brca1	ENSMUST00000105502.1|Foxo3|ENSMUSG00000048756.5|forkhead box O3 	ENSMUST00000105501.1|Foxo3|ENSMUSG00000048756.5|forkhead box O3
mm10_v2_chr13_+_24943144_24943164	0.260102	Brca1	ENSMUST00000021773.5|Gpld1|ENSMUSG00000021340.6|glycosylphosphatidylinositol specific phospholipase D1
mm10_v2_chr9_+_44773191_44773263	0.258605	Brca1	ENSMUST00000147559.1|Ift46|ENSMUSG00000002031.5|intraflagellar transport 46
mm10_v2_chr16_+_22009471_22009543	0.252666	Brca1	ENSMUST00000023561.7|Senp2|ENSMUSG00000022855.8|SUMO/sentrin specific peptidase 2
mm10_v2_chr3_+_96172327_96172338	0.246555	Brca1	ENSMUST00000076372.4|Sf3b4|ENSMUSG00000068856.3|splicing factor 3b, subunit 4
mm10_v2_chr11_-_69920581_69920630	0.239503	Brca1	ENSMUST00000108610.1|Eif5a|ENSMUSG00000078812.4|eukaryotic translation initiation factor 5A
mm10_v2_chr11_-_11890368_11890379	0.239393	Brca1	ENSMUST00000155690.1|Ddc|ENSMUSG00000020182.10|dopa decarboxylase
mm10_v2_chr1_-_171281181_171281192	0.236133	Brca1	ENSMUST00000073120.4|Ppox|ENSMUSG00000062729.5|protoporphyrinogen oxidase
mm10_v2_chr2_-_34870921_34870980	0.228421	Brca1	ENSMUST00000028225.5|Psmd5|ENSMUSG00000026869.6|proteasome (prosome, macropain) 26S subunit, non-ATPase, 5
mm10_v2_chr19_+_46152505_46152514	0.228177	Brca1	ENSMUST00000026254.7|Gbf1|ENSMUSG00000025224.8|golgi-specific brefeldin A-resistance factor 1
mm10_v2_chr4_+_129058133_129058409	0.222321	Brca1	ENSMUST00000030584.4|Rnf19b|ENSMUSG00000028793.9|ring finger protein 19B 	ENSMUST00000168461.1|Rnf19b|ENSMUSG00000028793.9|ring finger protein 19B 	ENSMUST00000152565.1|Rnf19b|ENSMUSG00000028793.9|ring finger protein 19B
mm10_v2_chr2_-_9883993_9883993	0.221159	Brca1	ENSMUST00000114915.2|9230102O04Rik|ENSMUSG00000079602.2|RIKEN cDNA 9230102O04 gene
mm10_v2_chr3_-_88951146_88951213	0.21787	Brca1	ENSMUST00000173135.1|Dap3|ENSMUSG00000068921.8|death associated protein 3
mm10_v2_chr3_-_51277470_51277514	0.217828	Brca1	ENSMUST00000108053.2|Elf2|ENSMUSG00000037174.12|E74-like factor 2 	ENSMUST00000108051.1|Elf2|ENSMUSG00000037174.12|E74-like factor 2
mm10_v2_chr7_-_80947499_80947579	0.216704	Brca1	ENSMUST00000120285.1|Sec11a|ENSMUSG00000025724.6|SEC11 homolog A (S. cerevisiae)
mm10_v2_chr10_-_128923439_128923545	0.215957	Brca1	ENSMUST00000153731.1|Bloc1s1|ENSMUSG00000090247.1|biogenesis of lysosome-related organelles complex-1, subunit 1 	ENSMUST00000026405.3|Bloc1s1|ENSMUSG00000090247.1|biogenesis of lysosome-related organelles complex-1, subunit 1
mm10_v2_chr13_+_55714624_55714650	0.209144	Brca1	ENSMUST00000021959.9|Txndc15|ENSMUSG00000021497.9|thioredoxin domain containing 15
mm10_v2_chr18_+_36793918_36793937	0.20755	Brca1	ENSMUST00000001419.8|Zmat2|ENSMUSG00000001383.8|zinc finger, matrin type 2
mm10_v2_chr14_-_54864055_54864158	0.206999	Brca1	ENSMUST00000142283.2|Homez|ENSMUSG00000057156.9|homeodomain leucine zipper-encoding gene
mm10_v2_chr7_-_4996044_4996094	0.201961	Brca1	ENSMUST00000162502.1|Zfp579|ENSMUSG00000051550.10|zinc finger protein 579
mm10_v2_chr13_+_100651607_100651631	0.201427	Brca1	ENSMUST00000167256.1|Taf9|ENSMUSG00000052293.8|TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor
mm10_v2_chr15_-_34443508_34443640	0.181807	Brca1	ENSMUST00000079735.5|Rpl30|ENSMUSG00000058600.7|ribosomal protein L30
mm10_v2_chr19_+_10204014_10204014	0.180567	Brca1	ENSMUST00000040372.7|Tmem258|ENSMUSG00000036372.8|transmembrane protein 258
mm10_v2_chr4_+_10874498_10874607	0.170456	Brca1	ENSMUST00000080517.7|2610301B20Rik|ENSMUSG00000059482.9|RIKEN cDNA 2610301B20 gene 	ENSMUST00000101504.2|2610301B20Rik|ENSMUSG00000059482.9|RIKEN cDNA 2610301B20 gene
mm10_v2_chr2_-_152831665_152831735	0.167752	Brca1	ENSMUST00000156688.1|Bcl2l1|ENSMUSG00000007659.12|BCL2-like 1 	ENSMUST00000007803.5|Bcl2l1|ENSMUSG00000007659.12|BCL2-like 1
mm10_v2_chr4_+_133176336_133176371	0.167531	Brca1	ENSMUST00000105912.1|Wasf2|ENSMUSG00000028868.7|WAS protein family, member 2
mm10_v2_chr17_-_6948283_6948356	0.166032	Brca1	ENSMUST00000024572.9|Rsph3b|ENSMUSG00000023806.9|radial spoke 3B homolog (Chlamydomonas)
mm10_v2_chr7_+_24370255_24370312	0.161578	Brca1	ENSMUST00000171904.1|Kcnn4|ENSMUSG00000054342.7|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4
mm10_v2_chr2_+_167932327_167932379	0.152563	Brca1	ENSMUST00000029053.7|Ptpn1|ENSMUSG00000027540.7|protein tyrosine phosphatase, non-receptor type 1
mm10_v2_chr11_+_70970467_70970517	0.147994	Brca1	ENSMUST00000178822.1|Rpain|ENSMUSG00000018449.6|RPA interacting protein 	ENSMUST00000108529.3|Rpain|ENSMUSG00000018449.6|RPA interacting protein 	ENSMUST00000169965.1|Rpain|ENSMUSG00000018449.6|RPA interacting protein 	ENSMUST00000167509.1|Rpain|ENSMUSG00000018449.6|RPA interacting protein
mm10_v2_chr7_+_28179469_28179535	0.145329	Brca1	ENSMUST00000085901.6|Dyrk1b|ENSMUSG00000002409.11|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1b 	ENSMUST00000172761.1|Dyrk1b|ENSMUSG00000002409.11|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1b
mm10_v2_chr4_+_100776664_100776692	0.144655	Brca1	ENSMUST00000030257.8|Cachd1|ENSMUSG00000028532.8|cache domain containing 1 	ENSMUST00000097955.2|Cachd1|ENSMUSG00000028532.8|cache domain containing 1
mm10_v2_chr3_-_95882232_95882251	0.142266	Brca1	ENSMUST00000161866.1|Gm129|ENSMUSG00000038550.4|predicted gene 129
mm10_v2_chr7_+_16816299_16816361	0.141676	Brca1	ENSMUST00000108495.2|Strn4|ENSMUSG00000030374.9|striatin, calmodulin binding protein 4
mm10_v2_chr5_-_115158169_115158180	0.141019	Brca1	ENSMUST00000053271.5|Mlec|ENSMUSG00000048578.7|malectin 	ENSMUST00000112121.1|Mlec|ENSMUSG00000048578.7|malectin
mm10_v2_chr4_+_43632185_43632185	0.137232	Brca1	ENSMUST00000107874.2|Npr2|ENSMUSG00000028469.9|natriuretic peptide receptor 2
mm10_v2_chr7_-_80947765_80947780	0.136476	Brca1	ENSMUST00000026818.5|Sec11a|ENSMUSG00000025724.6|SEC11 homolog A (S. cerevisiae) 	ENSMUST00000117383.1|Sec11a|ENSMUSG00000025724.6|SEC11 homolog A (S. cerevisiae) 	ENSMUST00000119980.1|Sec11a|ENSMUSG00000025724.6|SEC11 homolog A (S. cerevisiae)
mm10_v2_chr5_+_15934685_15934696	0.12827	Brca1	ENSMUST00000078272.6|Cacna2d1|ENSMUSG00000040118.9|calcium channel, voltage-dependent, alpha2/delta subunit 1 	ENSMUST00000180204.1|Cacna2d1|ENSMUSG00000040118.9|calcium channel, voltage-dependent, alpha2/delta subunit 1 	ENSMUST00000167946.2|Cacna2d1|ENSMUSG00000040118.9|calcium channel, voltage-dependent, alpha2/delta subunit 1 	ENSMUST00000101581.3|Cacna2d1|ENSMUSG00000040118.9|calcium channel, voltage-dependent, alpha2/delta subunit 1 	ENSMUST00000039370.7|Cacna2d1|ENSMUSG00000040118.9|calcium channel, voltage-dependent, alpha2/delta subunit 1
mm10_v2_chr3_-_90433603_90433636	0.127377	Brca1	ENSMUST00000029542.5|Ints3|ENSMUSG00000027933.5|integrator complex subunit 3 	ENSMUST00000071488.3|Ints3|ENSMUSG00000027933.5|integrator complex subunit 3
mm10_v2_chr12_-_108894116_108894174	0.120488	Brca1	ENSMUST00000109848.3|Wars|ENSMUSG00000021266.10|tryptophanyl-tRNA synthetase
mm10_v2_chr6_-_108185552_108185587	0.114523	Brca1	ENSMUST00000167338.1|Sumf1|ENSMUSG00000030101.9|sulfatase modifying factor 1 	ENSMUST00000172188.1|Sumf1|ENSMUSG00000030101.9|sulfatase modifying factor 1 	ENSMUST00000032191.9|Sumf1|ENSMUSG00000030101.9|sulfatase modifying factor 1
mm10_v2_chr3_-_95882031_95882074	0.113264	Brca1	ENSMUST00000161994.1|Gm129|ENSMUSG00000038550.4|predicted gene 129
mm10_v2_chr15_+_10952332_10952364	0.11171	Brca1	ENSMUST00000022853.8|C1qtnf3|ENSMUSG00000058914.6|C1q and tumor necrosis factor related protein 3 	ENSMUST00000110523.1|C1qtnf3|ENSMUSG00000058914.6|C1q and tumor necrosis factor related protein 3
mm10_v2_chr8_-_47990535_47990577	0.107905	Brca1	ENSMUST00000057561.7|Wwc2|ENSMUSG00000031563.7|WW, C2 and coiled-coil domain containing 2
mm10_v2_chrM_+_7759_7927	0.107273	Brca1	ENSMUST00000082407.1|mt-Atp8|ENSMUSG00000064356.3|mitochondrially encoded ATP synthase 8 	ENSMUST00000082408.1|mt-Atp6|ENSMUSG00000064357.1|mitochondrially encoded ATP synthase 6
mm10_v2_chr8_-_95853501_95853539	0.102914	Brca1	ENSMUST00000040481.3|Slc38a7|ENSMUSG00000036534.5|solute carrier family 38, member 7
mm10_v2_chr17_+_35841668_35841683	0.102378	Brca1	ENSMUST00000174124.1|Mdc1|ENSMUSG00000061607.8|mediator of DNA damage checkpoint 1
mm10_v2_chr5_-_31241215_31241243	0.0891151	Brca1	ENSMUST00000068997.3|Gm9970|ENSMUSG00000055424.3|predicted gene 9970
mm10_v2_chr10_-_127121125_127121160	0.0806995	Brca1	ENSMUST00000164259.1|Os9|ENSMUSG00000040462.6|amplified in osteosarcoma 	ENSMUST00000080975.4|Os9|ENSMUSG00000040462.6|amplified in osteosarcoma
mm10_v2_chr7_-_17027853_17027921	0.0806959	Brca1	ENSMUST00000003183.5|Ppp5c|ENSMUSG00000003099.5|protein phosphatase 5, catalytic subunit
mm10_v2_chr17_-_65613521_65613555	0.0806617	Brca1	ENSMUST00000024897.8|Vapa|ENSMUSG00000024091.8|vesicle-associated membrane protein, associated protein A
mm10_v2_chr16_-_16829276_16829349	0.0792776	Brca1	ENSMUST00000023468.5|Spag6|ENSMUSG00000022783.5|sperm associated antigen 6
mm10_v2_chr8_+_12915879_12915975	0.076068	Brca1	ENSMUST00000110876.2|Mcf2l|ENSMUSG00000031442.14|mcf.2 transforming sequence-like 	ENSMUST00000110879.2|Mcf2l|ENSMUSG00000031442.14|mcf.2 transforming sequence-like
mm10_v2_chr17_-_88065028_88065028	0.0733325	Brca1	ENSMUST00000130379.1|Fbxo11|ENSMUSG00000005371.8|F-box protein 11
mm10_v2_chr19_+_36083696_36083736	0.0708388	Brca1	ENSMUST00000025714.7|Rpp30|ENSMUSG00000024800.7|ribonuclease P/MRP 30 subunit
mm10_v2_chr11_-_96916407_96916426	0.0706879	Brca1	ENSMUST00000130774.1|Cdk5rap3|ENSMUSG00000018669.8|CDK5 regulatory subunit associated protein 3
mm10_v2_chr2_-_91182848_91182933	0.0653373	Brca1	ENSMUST00000111370.2|Madd|ENSMUSG00000040687.10|MAP-kinase activating death domain 	ENSMUST00000111376.1|Madd|ENSMUSG00000040687.10|MAP-kinase activating death domain 	ENSMUST00000099723.2|Madd|ENSMUSG00000040687.10|MAP-kinase activating death domain
mm10_v2_chr2_-_91183017_91183060	0.0597305	Brca1	ENSMUST00000066420.5|Madd|ENSMUSG00000040687.10|MAP-kinase activating death domain
mm10_v2_chr11_-_96916366_96916406	0.0584004	Brca1	ENSMUST00000144731.1|Cdk5rap3|ENSMUSG00000018669.8|CDK5 regulatory subunit associated protein 3 	ENSMUST00000127048.1|Cdk5rap3|ENSMUSG00000018669.8|CDK5 regulatory subunit associated protein 3
mm10_v2_chr4_-_43046196_43046220	0.0538624	Brca1	ENSMUST00000036462.5|Fam214b|ENSMUSG00000036002.6|family with sequence similarity 214, member B
mm10_v2_chr11_+_70970181_70970213	0.0538052	Brca1	ENSMUST00000018593.3|Rpain|ENSMUSG00000018449.6|RPA interacting protein
mm10_v2_chr17_+_33909481_33909576	0.0517162	Brca1	ENSMUST00000173626.1|Daxx|ENSMUSG00000002307.9|Fas death domain-associated protein 	ENSMUST00000174541.1|Daxx|ENSMUSG00000002307.9|Fas death domain-associated protein
mm10_v2_chr3_+_90062781_90062836	0.0468717	Brca1	ENSMUST00000029551.2|1700094D03Rik|ENSMUSG00000078667.2|RIKEN cDNA 1700094D03 gene
mm10_v2_chr11_-_109472611_109472688	0.0456706	Brca1	ENSMUST00000168740.1|Slc16a6|ENSMUSG00000041920.8|solute carrier family 16 (monocarboxylic acid transporters), member 6
mm10_v2_chr12_+_87266696_87266760	0.0444365	Brca1	ENSMUST00000021425.6|Ahsa1|ENSMUSG00000021037.6|AHA1, activator of heat shock protein ATPase 1
mm10_v2_chrX_-_150589844_150589861	0.0440985	Brca1	ENSMUST00000112725.1|Apex2|ENSMUSG00000025269.10|apurinic/apyrimidinic endonuclease 2 	ENSMUST00000112720.1|Apex2|ENSMUSG00000025269.10|apurinic/apyrimidinic endonuclease 2
mm10_v2_chr16_+_20696175_20696211	0.0417016	Brca1	ENSMUST00000128273.1|Fam131a|ENSMUSG00000050821.7|family with sequence similarity 131, member A
mm10_v2_chr1_-_67038824_67038872	0.0367342	Brca1	ENSMUST00000119559.1|Lancl1|ENSMUSG00000026000.10|LanC (bacterial lantibiotic synthetase component C)-like 1 	ENSMUST00000149996.1|Lancl1|ENSMUSG00000026000.10|LanC (bacterial lantibiotic synthetase component C)-like 1 	ENSMUST00000027149.5|Lancl1|ENSMUSG00000026000.10|LanC (bacterial lantibiotic synthetase component C)-like 1 	ENSMUST00000113979.3|Lancl1|ENSMUSG00000026000.10|LanC (bacterial lantibiotic synthetase component C)-like 1
mm10_v2_chr5_-_21701332_21701404	0.0243304	Brca1	ENSMUST00000115217.1|Napepld|ENSMUSG00000044968.10|N-acyl phosphatidylethanolamine phospholipase D 	ENSMUST00000060899.8|Napepld|ENSMUSG00000044968.10|N-acyl phosphatidylethanolamine phospholipase D
mm10_v2_chr7_-_17027807_17027846	0.0193346	Brca1	ENSMUST00000142597.1|Ppp5c|ENSMUSG00000003099.5|protein phosphatase 5, catalytic subunit
mm10_v2_chr2_+_121008403_121008481	0.0136606	Brca1	ENSMUST00000060455.8|Ccndbp1|ENSMUSG00000023572.10|cyclin D-type binding-protein 1 	ENSMUST00000099488.4|Ccndbp1|ENSMUSG00000023572.10|cyclin D-type binding-protein 1 	ENSMUST00000099489.2|Ccndbp1|ENSMUSG00000023572.10|cyclin D-type binding-protein 1 	ENSMUST00000171260.2|Ccndbp1|ENSMUSG00000023572.10|cyclin D-type binding-protein 1
mm10_v2_chr9_+_108392820_108392843	0.0125284	Brca1	ENSMUST00000035234.4|1700102P08Rik|ENSMUSG00000032611.4|RIKEN cDNA 1700102P08 gene
