mm10_v2_chr9_+_34486125_34486126	7.87807	Ctcfl_Ctcf	ENSMUST00000183580.1|RP24-225I21.1|ENSMUSG00000098841.1|RP24-225I21.1	ENSMUST00000115148.2|Kirrel3|ENSMUSG00000032036.9|kin of IRRE like 3 (Drosophila)
mm10_v2_chr13_-_54055650_54055680	7.13541	Ctcfl_Ctcf	ENSMUST00000021932.5|Drd1a|ENSMUSG00000021478.5|dopamine receptor D1A
mm10_v2_chr18_-_66291770_66291840	5.5642	Ctcfl_Ctcf	ENSMUST00000130300.1|Ccbe1|ENSMUSG00000046318.9|collagen and calcium binding EGF domains 1
mm10_v2_chr15_-_44788016_44788063	5.33973	Ctcfl_Ctcf	ENSMUST00000090057.4|Sybu|ENSMUSG00000022340.8|syntabulin (syntaxin-interacting) 	ENSMUST00000110269.1|Sybu|ENSMUSG00000022340.8|syntabulin (syntaxin-interacting)
mm10_v2_chr16_-_26371828_26371846	5.2566	Ctcfl_Ctcf	ENSMUST00000023154.2|Cldn1|ENSMUSG00000022512.2|claudin 1
mm10_v2_chr5_-_123132651_123132692	5.15295	Ctcfl_Ctcf	ENSMUST00000031401.5|Rhof|ENSMUSG00000029449.5|ras homolog gene family, member f
mm10_v2_chr11_-_109298121_109298142	4.8954	Ctcfl_Ctcf	ENSMUST00000020920.3|Rgs9|ENSMUSG00000020599.7|regulator of G-protein signaling 9
mm10_v2_chr6_-_136173492_136173523	4.73769	Ctcfl_Ctcf	ENSMUST00000111905.1|Grin2b|ENSMUSG00000030209.8|glutamate receptor, ionotropic, NMDA2B (epsilon 2)
mm10_v2_chr11_-_109298066_109298079	4.64524	Ctcfl_Ctcf	ENSMUST00000106706.1|Rgs9|ENSMUSG00000020599.7|regulator of G-protein signaling 9
mm10_v2_chr2_+_65620829_65620857	4.4406	Ctcfl_Ctcf	ENSMUST00000028377.7|Scn2a1|ENSMUSG00000075318.6|sodium channel, voltage-gated, type II, alpha 1
mm10_v2_chr9_-_102354685_102354699	4.28331	Ctcfl_Ctcf	ENSMUST00000035129.7|Ephb1|ENSMUSG00000032537.8|Eph receptor B1 	ENSMUST00000085169.5|Ephb1|ENSMUSG00000032537.8|Eph receptor B1
mm10_v2_chr14_+_62555737_62555812	4.07392	Ctcfl_Ctcf	ENSMUST00000039064.7|Fam124a|ENSMUSG00000035184.9|family with sequence similarity 124, member A
mm10_v2_chr2_-_32353283_32353311	3.92037	Ctcfl_Ctcf	ENSMUST00000091089.5|Dnm1|ENSMUSG00000026825.11|dynamin 1 	ENSMUST00000113350.1|Dnm1|ENSMUSG00000026825.11|dynamin 1
mm10_v2_chr18_+_36952621_36952766	3.86794	Ctcfl_Ctcf	ENSMUST00000115661.2|Pcdha2|ENSMUSG00000007440.8|protocadherin alpha 2
mm10_v2_chr2_-_32353247_32353282	3.83833	Ctcfl_Ctcf	ENSMUST00000078352.5|Dnm1|ENSMUSG00000026825.11|dynamin 1 	ENSMUST00000113352.2|Dnm1|ENSMUSG00000026825.11|dynamin 1 	ENSMUST00000113365.1|Dnm1|ENSMUSG00000026825.11|dynamin 1
mm10_v2_chr7_+_121392266_121392296	3.74919	Ctcfl_Ctcf	ENSMUST00000084628.3|Hs3st2|ENSMUSG00000046321.7|heparan sulfate (glucosamine) 3-O-sulfotransferase 2
mm10_v2_chr11_-_95514570_95514707	3.61775	Ctcfl_Ctcf	ENSMUST00000058866.7|Nxph3|ENSMUSG00000046719.7|neurexophilin 3
mm10_v2_chr11_+_103103051_103103115	3.40848	Ctcfl_Ctcf	ENSMUST00000152971.1|Acbd4|ENSMUSG00000056938.10|acyl-Coenzyme A binding domain containing 4
mm10_v2_chr11_+_32286946_32286980	3.30199	Ctcfl_Ctcf	ENSMUST00000101387.3|Hbq1b|ENSMUSG00000073063.3|hemoglobin, theta 1B
mm10_v2_chr11_-_76577701_76577727	3.22568	Ctcfl_Ctcf	ENSMUST00000176179.1|Abr|ENSMUSG00000017631.12|active BCR-related gene
mm10_v2_chr7_+_16309577_16309641	3.19243	Ctcfl_Ctcf	ENSMUST00000002152.6|Bbc3|ENSMUSG00000002083.6|BCL2 binding component 3
mm10_v2_chr19_-_12501996_12502152	3.15092	Ctcfl_Ctcf	ENSMUST00000045521.7|Dtx4|ENSMUSG00000039982.7|deltex 4 homolog (Drosophila)
mm10_v2_chr18_-_36515798_36515812	2.94786	Ctcfl_Ctcf	ENSMUST00000025363.5|Hbegf|ENSMUSG00000024486.5|heparin-binding EGF-like growth factor
mm10_v2_chr15_+_44787746_44787782	2.94596	Ctcfl_Ctcf	ENSMUST00000181839.1|2310069G16Rik|ENSMUSG00000097102.1|RIKEN cDNA 2310069G16 gene
mm10_v2_chr15_-_93519499_93519526	2.88078	Ctcfl_Ctcf	ENSMUST00000109255.2|Prickle1|ENSMUSG00000036158.6|prickle homolog 1 (Drosophila)
mm10_v2_chr11_-_45944910_45944960	2.76603	Ctcfl_Ctcf	ENSMUST00000129820.1|Lsm11|ENSMUSG00000044847.7|U7 snRNP-specific Sm-like protein LSM11
mm10_v2_chr7_+_16310412_16310455	2.67584	Ctcfl_Ctcf	ENSMUST00000136781.1|Bbc3|ENSMUSG00000002083.6|BCL2 binding component 3
mm10_v2_chr19_-_57360668_57360793	2.66331	Ctcfl_Ctcf	ENSMUST00000181921.1|B230217O12Rik|ENSMUSG00000097785.1|RIKEN cDNA B230217O12 gene
mm10_v2_chr18_+_37421418_37421455	2.64596	Ctcfl_Ctcf	ENSMUST00000053073.4|Pcdhb11|ENSMUSG00000051486.4|protocadherin beta 11
mm10_v2_chr18_+_37435602_37435636	2.60551	Ctcfl_Ctcf	ENSMUST00000055495.5|Pcdhb12|ENSMUSG00000043458.5|protocadherin beta 12
mm10_v2_chr19_-_45816007_45816076	2.588	Ctcfl_Ctcf	ENSMUST00000079431.3|Kcnip2|ENSMUSG00000025221.9|Kv channel-interacting protein 2 	ENSMUST00000026247.6|Kcnip2|ENSMUSG00000025221.9|Kv channel-interacting protein 2 	ENSMUST00000162528.2|Kcnip2|ENSMUSG00000025221.9|Kv channel-interacting protein 2
mm10_v2_chr9_-_98032983_98033122	2.58268	Ctcfl_Ctcf	ENSMUST00000162295.1|Clstn2|ENSMUSG00000032452.6|calsyntenin 2
mm10_v2_chr11_+_32300069_32300069	2.36884	Ctcfl_Ctcf	ENSMUST00000020535.1|Hbq1a|ENSMUSG00000020295.1|hemoglobin, theta 1A
mm10_v2_chr5_-_142550965_142551110	2.3544	Ctcfl_Ctcf	ENSMUST00000129212.1|Radil|ENSMUSG00000029576.11|Ras association and DIL domains 	ENSMUST00000110785.1|Radil|ENSMUSG00000029576.11|Ras association and DIL domains 	ENSMUST00000063635.8|Radil|ENSMUSG00000029576.11|Ras association and DIL domains
mm10_v2_chr19_+_6418731_6418810	2.35182	Ctcfl_Ctcf	ENSMUST00000113462.1|Nrxn2|ENSMUSG00000033768.10|neurexin II 	ENSMUST00000077182.6|Nrxn2|ENSMUSG00000033768.10|neurexin II 	ENSMUST00000113461.1|Nrxn2|ENSMUSG00000033768.10|neurexin II
mm10_v2_chr17_+_34135182_34135182	2.33766	Ctcfl_Ctcf	ENSMUST00000042121.9|H2-DMa|ENSMUSG00000037649.9|histocompatibility 2, class II, locus DMa
mm10_v2_chr13_+_117602439_117602482	2.24241	Ctcfl_Ctcf	ENSMUST00000006991.7|Hcn1|ENSMUSG00000021730.7|hyperpolarization-activated, cyclic nucleotide-gated K+ 1
mm10_v2_chr1_-_134234492_134234578	2.23134	Ctcfl_Ctcf	ENSMUST00000169927.1|Adora1|ENSMUSG00000042429.7|adenosine A1 receptor
mm10_v2_chr18_-_61911783_61911854	2.21215	Ctcfl_Ctcf	ENSMUST00000049378.8|Ablim3|ENSMUSG00000032735.8|actin binding LIM protein family, member 3 	ENSMUST00000166783.1|Ablim3|ENSMUSG00000032735.8|actin binding LIM protein family, member 3
mm10_v2_chr8_+_66697404_66697428	2.20773	Ctcfl_Ctcf	ENSMUST00000039303.5|Npy1r|ENSMUSG00000036437.5|neuropeptide Y receptor Y1
mm10_v2_chr11_+_104231573_104231584	2.2004	Ctcfl_Ctcf	ENSMUST00000132977.1|Mapt|ENSMUSG00000018411.11|microtubule-associated protein tau 	ENSMUST00000132245.1|Mapt|ENSMUSG00000018411.11|microtubule-associated protein tau 	ENSMUST00000100347.4|Mapt|ENSMUSG00000018411.11|microtubule-associated protein tau
mm10_v2_chr11_+_104231390_104231453	2.19573	Ctcfl_Ctcf	ENSMUST00000106992.3|Mapt|ENSMUSG00000018411.11|microtubule-associated protein tau
mm10_v2_chr15_-_45114926_45114938	2.18238	Ctcfl_Ctcf	ENSMUST00000022967.5|Kcnv1|ENSMUSG00000022342.5|potassium channel, subfamily V, member 1
mm10_v2_chr19_-_10304867_10304954	2.18112	Ctcfl_Ctcf	ENSMUST00000039327.4|Dagla|ENSMUSG00000035735.4|diacylglycerol lipase, alpha
mm10_v2_chr11_+_104231515_104231528	2.15816	Ctcfl_Ctcf	ENSMUST00000106993.3|Mapt|ENSMUSG00000018411.11|microtubule-associated protein tau
mm10_v2_chr11_+_104231465_104231507	2.10311	Ctcfl_Ctcf	ENSMUST00000145227.1|Mapt|ENSMUSG00000018411.11|microtubule-associated protein tau
mm10_v2_chr11_+_119267887_119267968	2.09826	Ctcfl_Ctcf	ENSMUST00000106259.2|Gaa|ENSMUSG00000025579.8|glucosidase, alpha, acid
mm10_v2_chr18_-_43393346_43393381	1.92588	Ctcfl_Ctcf	ENSMUST00000025379.7|Dpysl3|ENSMUSG00000024501.13|dihydropyrimidinase-like 3
mm10_v2_chr11_+_119268004_119268099	1.8588	Ctcfl_Ctcf	ENSMUST00000026666.6|Gaa|ENSMUSG00000025579.8|glucosidase, alpha, acid 	ENSMUST00000106258.1|Gaa|ENSMUSG00000025579.8|glucosidase, alpha, acid
mm10_v2_chr19_+_6400523_6400583	1.82768	Ctcfl_Ctcf	ENSMUST00000146831.1|Rasgrp2|ENSMUSG00000032946.10|RAS, guanyl releasing protein 2 	ENSMUST00000035716.8|Rasgrp2|ENSMUSG00000032946.10|RAS, guanyl releasing protein 2 	ENSMUST00000138555.1|Rasgrp2|ENSMUSG00000032946.10|RAS, guanyl releasing protein 2 	ENSMUST00000167240.1|Rasgrp2|ENSMUSG00000032946.10|RAS, guanyl releasing protein 2
mm10_v2_chr10_+_88379127_88379169	1.81366	Ctcfl_Ctcf	ENSMUST00000127615.1|Gnptab|ENSMUSG00000035311.10|N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits
mm10_v2_chr4_-_6990774_6990823	1.8054	Ctcfl_Ctcf	ENSMUST00000039987.3|Tox|ENSMUSG00000041272.5|thymocyte selection-associated high mobility group box
mm10_v2_chr4_+_103313806_103313820	1.78813	Ctcfl_Ctcf	ENSMUST00000035780.3|Oma1|ENSMUSG00000035069.3|OMA1 homolog, zinc metallopeptidase (S. cerevisiae)
mm10_v2_chr2_-_119271202_119271272	1.77381	Ctcfl_Ctcf	ENSMUST00000037360.7|Rhov|ENSMUSG00000034226.7|ras homolog gene family, member V
mm10_v2_chr10_+_88379217_88379299	1.75381	Ctcfl_Ctcf	ENSMUST00000130301.1|Gnptab|ENSMUSG00000035311.10|N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits 	ENSMUST00000020251.8|Gnptab|ENSMUSG00000035311.10|N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits
mm10_v2_chr10_+_86021961_86021991	1.70108	Ctcfl_Ctcf	ENSMUST00000130320.1|Fbxo7|ENSMUSG00000001786.8|F-box protein 7
mm10_v2_chr3_-_89160155_89160202	1.64315	Ctcfl_Ctcf	ENSMUST00000029686.3|Hcn3|ENSMUSG00000028051.4|hyperpolarization-activated, cyclic nucleotide-gated K+ 3
mm10_v2_chr17_-_29237759_29237827	1.63579	Ctcfl_Ctcf	ENSMUST00000137727.1|Cpne5|ENSMUSG00000024008.9|copine V 	ENSMUST00000024805.7|Cpne5|ENSMUSG00000024008.9|copine V
mm10_v2_chr7_+_66839752_66839813	1.61282	Ctcfl_Ctcf	ENSMUST00000107478.1|Adamts17|ENSMUSG00000058145.9|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 17
mm10_v2_chr7_+_66839726_66839750	1.60912	Ctcfl_Ctcf	ENSMUST00000098382.3|Adamts17|ENSMUSG00000058145.9|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 17
mm10_v2_chrX_+_73787002_73787028	1.59638	Ctcfl_Ctcf	ENSMUST00000166518.1|Ssr4|ENSMUSG00000002014.6|signal sequence receptor, delta
mm10_v2_chr18_+_37020097_37020230	1.59579	Ctcfl_Ctcf	ENSMUST00000047614.1|Pcdha2|ENSMUSG00000007440.8|protocadherin alpha 2
mm10_v2_chr3_+_95217417_95217484	1.58206	Ctcfl_Ctcf	ENSMUST00000181819.1|Gm16740|ENSMUSG00000097167.1|predicted gene, 16740
mm10_v2_chr5_-_137741102_137741185	1.58196	Ctcfl_Ctcf	ENSMUST00000149512.1|Nyap1|ENSMUSG00000045348.9|neuronal tyrosine-phosphorylated phosphoinositide 3-kinase adaptor 1
mm10_v2_chr3_-_103737995_103738006	1.56843	Ctcfl_Ctcf	ENSMUST00000029440.8|Olfml3|ENSMUSG00000027848.10|olfactomedin-like 3
mm10_v2_chr4_+_126262325_126262380	1.55986	Ctcfl_Ctcf	ENSMUST00000030660.8|Trappc3|ENSMUSG00000028847.8|trafficking protein particle complex 3
mm10_v2_chr2_+_144599897_144600039	1.55513	Ctcfl_Ctcf	ENSMUST00000028917.6|Dtd1|ENSMUSG00000027430.6|D-tyrosyl-tRNA deacylase 1
mm10_v2_chr2_-_118373347_118373419	1.55009	Ctcfl_Ctcf	ENSMUST00000039160.2|Gpr176|ENSMUSG00000040133.2|G protein-coupled receptor 176
mm10_v2_chr4_+_125085134_125085261	1.54559	Ctcfl_Ctcf	ENSMUST00000154689.1|Meaf6|ENSMUSG00000028863.7|MYST/Esa1-associated factor 6 	ENSMUST00000055213.4|Meaf6|ENSMUSG00000028863.7|MYST/Esa1-associated factor 6 	ENSMUST00000106171.2|Meaf6|ENSMUSG00000028863.7|MYST/Esa1-associated factor 6
mm10_v2_chr8_+_71371283_71371359	1.53799	Ctcfl_Ctcf	ENSMUST00000110051.1|Ocel1|ENSMUSG00000002396.8|occludin/ELL domain containing 1 	ENSMUST00000002469.8|Ocel1|ENSMUSG00000002396.8|occludin/ELL domain containing 1 	ENSMUST00000110052.1|Ocel1|ENSMUSG00000002396.8|occludin/ELL domain containing 1
mm10_v2_chr2_-_166155272_166155286	1.53213	Ctcfl_Ctcf	ENSMUST00000088086.3|Sulf2|ENSMUSG00000006800.7|sulfatase 2
mm10_v2_chr2_+_154613297_154613370	1.50939	Ctcfl_Ctcf	ENSMUST00000081926.6|Zfp341|ENSMUSG00000059842.6|zinc finger protein 341 	ENSMUST00000109702.1|Zfp341|ENSMUSG00000059842.6|zinc finger protein 341
mm10_v2_chr10_+_127165118_127165225	1.50813	Ctcfl_Ctcf	ENSMUST00000006914.9|B4galnt1|ENSMUSG00000006731.9|beta-1,4-N-acetyl-galactosaminyl transferase 1
mm10_v2_chrX_+_73787062_73787101	1.47047	Ctcfl_Ctcf	ENSMUST00000002090.2|Ssr4|ENSMUSG00000002014.6|signal sequence receptor, delta
mm10_v2_chr4_+_43381979_43382084	1.45641	Ctcfl_Ctcf	ENSMUST00000035645.5|Rusc2|ENSMUSG00000035969.9|RUN and SH3 domain containing 2 	ENSMUST00000144911.1|Rusc2|ENSMUSG00000035969.9|RUN and SH3 domain containing 2
mm10_v2_chr18_+_74442551_74442631	1.45137	Ctcfl_Ctcf	ENSMUST00000121875.1|Myo5b|ENSMUSG00000025885.12|myosin VB
mm10_v2_chr5_-_137741601_137741617	1.43855	Ctcfl_Ctcf	ENSMUST00000119498.1|Nyap1|ENSMUSG00000045348.9|neuronal tyrosine-phosphorylated phosphoinositide 3-kinase adaptor 1 	ENSMUST00000061789.7|Nyap1|ENSMUSG00000045348.9|neuronal tyrosine-phosphorylated phosphoinositide 3-kinase adaptor 1
mm10_v2_chr10_+_93160824_93160894	1.4372	Ctcfl_Ctcf	ENSMUST00000069965.7|Cdk17|ENSMUSG00000020015.9|cyclin-dependent kinase 17
mm10_v2_chr10_-_128409632_128409874	1.43079	Ctcfl_Ctcf	ENSMUST00000172348.1|Nabp2|ENSMUSG00000025374.7|nucleic acid binding protein 2 	ENSMUST00000166608.1|Nabp2|ENSMUSG00000025374.7|nucleic acid binding protein 2 	ENSMUST00000164199.1|Nabp2|ENSMUSG00000025374.7|nucleic acid binding protein 2 	ENSMUST00000171370.1|Nabp2|ENSMUSG00000025374.7|nucleic acid binding protein 2 	ENSMUST00000026439.7|Nabp2|ENSMUSG00000025374.7|nucleic acid binding protein 2
mm10_v2_chr18_+_37307445_37307462	1.37331	Ctcfl_Ctcf	ENSMUST00000056712.2|Pcdhb4|ENSMUSG00000045689.2|protocadherin beta 4
mm10_v2_chr11_-_102447647_102447682	1.36024	Ctcfl_Ctcf	ENSMUST00000049057.4|Fam171a2|ENSMUSG00000034685.4|family with sequence similarity 171, member A2
mm10_v2_chr11_-_109298090_109298118	1.35109	Ctcfl_Ctcf	ENSMUST00000106704.2|Rgs9|ENSMUSG00000020599.7|regulator of G-protein signaling 9
mm10_v2_chr18_-_37020679_37020679	1.32744	Ctcfl_Ctcf	ENSMUST00000097612.2|Gm10545|ENSMUSG00000073594.2|predicted gene 10545
mm10_v2_chr1_+_181352618_181352641	1.31824	Ctcfl_Ctcf	ENSMUST00000161880.1|Cnih3|ENSMUSG00000026514.7|cornichon homolog 3 (Drosophila) 	ENSMUST00000027795.7|Cnih3|ENSMUSG00000026514.7|cornichon homolog 3 (Drosophila)
mm10_v2_chr11_-_103101609_103101662	1.28879	Ctcfl_Ctcf	ENSMUST00000103077.1|Plcd3|ENSMUSG00000020937.8|phospholipase C, delta 3
mm10_v2_chr17_-_25433775_25433790	1.28231	Ctcfl_Ctcf	ENSMUST00000159610.1|Cacna1h|ENSMUSG00000024112.10|calcium channel, voltage-dependent, T type, alpha 1H subunit 	ENSMUST00000159048.1|Cacna1h|ENSMUSG00000024112.10|calcium channel, voltage-dependent, T type, alpha 1H subunit 	ENSMUST00000078496.5|Cacna1h|ENSMUSG00000024112.10|calcium channel, voltage-dependent, T type, alpha 1H subunit
mm10_v2_chr18_+_74442500_74442537	1.28041	Ctcfl_Ctcf	ENSMUST00000074157.6|Myo5b|ENSMUSG00000025885.12|myosin VB
mm10_v2_chr18_+_37400845_37400886	1.21856	Ctcfl_Ctcf	ENSMUST00000057228.1|Pcdhb9|ENSMUSG00000051242.1|protocadherin beta 9
mm10_v2_chr9_+_104569671_104569683	1.20459	Ctcfl_Ctcf	ENSMUST00000057742.8|Cpne4|ENSMUSG00000032564.9|copine IV
mm10_v2_chr9_-_20728219_20728219	1.19003	Ctcfl_Ctcf	ENSMUST00000034692.7|Olfm2|ENSMUSG00000032172.7|olfactomedin 2
mm10_v2_chr9_-_56418023_56418052	1.18728	Ctcfl_Ctcf	ENSMUST00000061552.8|C230081A13Rik|ENSMUSG00000074305.3|RIKEN cDNA C230081A13 gene
mm10_v2_chr1_+_191575721_191575792	1.1824	Ctcfl_Ctcf	ENSMUST00000045450.5|Ints7|ENSMUSG00000037461.5|integrator complex subunit 7
mm10_v2_chr9_+_104569754_104569793	1.16846	Ctcfl_Ctcf	ENSMUST00000077190.6|Cpne4|ENSMUSG00000032564.9|copine IV
mm10_v2_chr15_+_99224976_99224976	1.16141	Ctcfl_Ctcf	ENSMUST00000041415.3|Kcnh3|ENSMUSG00000037579.6|potassium voltage-gated channel, subfamily H (eag-related), member 3
mm10_v2_chr19_+_23758819_23758907	1.14966	Ctcfl_Ctcf	ENSMUST00000025830.7|Apba1|ENSMUSG00000024897.8|amyloid beta (A4) precursor protein binding, family  A, member 1
mm10_v2_chr17_-_27565678_27565757	1.14821	Ctcfl_Ctcf	ENSMUST00000154473.1|AI413582|ENSMUSG00000062753.7|expressed sequence AI413582
mm10_v2_chr5_+_122391878_122391928	1.14626	Ctcfl_Ctcf	ENSMUST00000102525.4|Arpc3|ENSMUSG00000029465.8|actin related protein 2/3 complex, subunit 3
mm10_v2_chr6_-_89362581_89362637	1.14021	Ctcfl_Ctcf	ENSMUST00000163139.1|Plxna1|ENSMUSG00000030084.5|plexin A1
mm10_v2_chr10_+_52690496_52690554	1.12974	Ctcfl_Ctcf	ENSMUST00000105473.2|Slc35f1|ENSMUSG00000038602.7|solute carrier family 35, member F1
mm10_v2_chr6_+_83101565_83101617	1.11129	Ctcfl_Ctcf	ENSMUST00000101254.3|Ccdc142|ENSMUSG00000079511.3|coiled-coil domain containing 142
mm10_v2_chr14_+_65968483_65968651	1.09814	Ctcfl_Ctcf	ENSMUST00000022616.6|Clu|ENSMUSG00000022037.8|clusterin
mm10_v2_chr11_+_84179792_84179849	1.08956	Ctcfl_Ctcf	ENSMUST00000137500.2|Acaca|ENSMUSG00000020532.12|acetyl-Coenzyme A carboxylase alpha 	ENSMUST00000130012.2|Acaca|ENSMUSG00000020532.12|acetyl-Coenzyme A carboxylase alpha
mm10_v2_chr2_-_154613425_154613444	1.08682	Ctcfl_Ctcf	ENSMUST00000181369.1|4930519P11Rik|ENSMUSG00000097602.1|RIKEN cDNA 4930519P11 gene
mm10_v2_chr5_+_35056813_35056895	1.07197	Ctcfl_Ctcf	ENSMUST00000101298.2|Dok7|ENSMUSG00000044716.6|docking protein 7 	ENSMUST00000114270.1|Dok7|ENSMUSG00000044716.6|docking protein 7 	ENSMUST00000133381.1|Dok7|ENSMUSG00000044716.6|docking protein 7
mm10_v2_chr1_+_163779575_163779592	1.06636	Ctcfl_Ctcf	ENSMUST00000027877.6|Kifap3|ENSMUSG00000026585.7|kinesin-associated protein 3 	ENSMUST00000077642.5|Kifap3|ENSMUSG00000026585.7|kinesin-associated protein 3
mm10_v2_chr14_+_57999305_57999338	1.04276	Ctcfl_Ctcf	ENSMUST00000180534.1|3110083C13Rik|ENSMUSG00000097303.1|RIKEN cDNA 3110083C13 gene
mm10_v2_chr16_-_30550560_30550594	1.04154	Ctcfl_Ctcf	ENSMUST00000140402.1|Tmem44|ENSMUSG00000022537.11|transmembrane protein 44
mm10_v2_chrX_-_73786888_73786899	1.03477	Ctcfl_Ctcf	ENSMUST00000052761.8|Idh3g|ENSMUSG00000002010.11|isocitrate dehydrogenase 3 (NAD+), gamma
mm10_v2_chr4_+_43441939_43441939	1.02842	Ctcfl_Ctcf	ENSMUST00000060864.6|Tesk1|ENSMUSG00000028458.6|testis specific protein kinase 1
mm10_v2_chr9_+_111311674_111311758	1.02507	Ctcfl_Ctcf	ENSMUST00000078626.3|Trank1|ENSMUSG00000062296.4|tetratricopeptide repeat and ankyrin repeat containing 1
mm10_v2_chr1_+_50927511_50927543	1.01298	Ctcfl_Ctcf	ENSMUST00000081851.3|Tmeff2|ENSMUSG00000026109.8|transmembrane protein with EGF-like and two follistatin-like domains 2
mm10_v2_chr7_-_74554726_74554791	1.01239	Ctcfl_Ctcf	ENSMUST00000107453.1|Slco3a1|ENSMUSG00000025790.8|solute carrier organic anion transporter family, member 3a1
mm10_v2_chr9_-_75599124_75599141	1.01105	Ctcfl_Ctcf	ENSMUST00000098552.2|Tmod2|ENSMUSG00000032186.8|tropomodulin 2
mm10_v2_chr18_+_37473538_37473562	1.01042	Ctcfl_Ctcf	ENSMUST00000050034.1|Pcdhb15|ENSMUSG00000047033.1|protocadherin beta 15
mm10_v2_chr11_-_66525964_66525964	1.00595	Ctcfl_Ctcf	ENSMUST00000066679.6|Shisa6|ENSMUSG00000053930.7|shisa homolog 6 (Xenopus laevis)
mm10_v2_chr4_-_46991842_46991916	1.00419	Ctcfl_Ctcf	ENSMUST00000107749.2|Gabbr2|ENSMUSG00000039809.9|gamma-aminobutyric acid (GABA) B receptor, 2
mm10_v2_chr5_+_30588078_30588171	0.99588	Ctcfl_Ctcf	ENSMUST00000066295.2|Kcnk3|ENSMUSG00000049265.6|potassium channel, subfamily K, member 3
mm10_v2_chr4_+_151933691_151933715	0.989348	Ctcfl_Ctcf	ENSMUST00000062904.4|Dnajc11|ENSMUSG00000039768.10|DnaJ (Hsp40) homolog, subfamily C, member 11
mm10_v2_chr7_-_31051431_31051488	0.984341	Ctcfl_Ctcf	ENSMUST00000073892.4|Fxyd7|ENSMUSG00000036578.6|FXYD domain-containing ion transport regulator 7
mm10_v2_chr13_-_74292297_74292331	0.976618	Ctcfl_Ctcf	ENSMUST00000109640.1|Ahrr|ENSMUSG00000021575.9|aryl-hydrocarbon receptor repressor 	ENSMUST00000022059.7|Ahrr|ENSMUSG00000021575.9|aryl-hydrocarbon receptor repressor
mm10_v2_chr16_+_72663143_72663189	0.971056	Ctcfl_Ctcf	ENSMUST00000023600.7|Robo1|ENSMUSG00000022883.10|roundabout homolog 1 (Drosophila)
mm10_v2_chr19_+_5568002_5568074	0.968332	Ctcfl_Ctcf	ENSMUST00000096318.3|Ap5b1|ENSMUSG00000049562.5|adaptor-related protein complex 5, beta 1 subunit
mm10_v2_chr5_-_136567242_136567287	0.961488	Ctcfl_Ctcf	ENSMUST00000175975.2|Cux1|ENSMUSG00000029705.11|cut-like homeobox 1 	ENSMUST00000176216.2|Cux1|ENSMUSG00000029705.11|cut-like homeobox 1 	ENSMUST00000176745.1|Cux1|ENSMUSG00000029705.11|cut-like homeobox 1
mm10_v2_chr11_-_3914664_3914664	0.958891	Ctcfl_Ctcf	ENSMUST00000109995.1|Slc35e4|ENSMUSG00000048807.2|solute carrier family 35, member E4 	ENSMUST00000051207.1|Slc35e4|ENSMUSG00000048807.2|solute carrier family 35, member E4
mm10_v2_chr11_-_82890541_82890626	0.946778	Ctcfl_Ctcf	ENSMUST00000092844.6|Rad51d|ENSMUSG00000018841.11|RAD51 homolog D 	ENSMUST00000021033.9|Rad51d|ENSMUSG00000018841.11|RAD51 homolog D 	ENSMUST00000018985.8|Rad51d|ENSMUSG00000018841.11|RAD51 homolog D
mm10_v2_chr6_-_29179584_29179584	0.944466	Ctcfl_Ctcf	ENSMUST00000159200.1|Prrt4|ENSMUSG00000079654.3|proline-rich transmembrane protein 4
mm10_v2_chr8_-_105565985_105566071	0.944152	Ctcfl_Ctcf	ENSMUST00000013304.7|Atp6v0d1|ENSMUSG00000013160.7|ATPase, H+ transporting, lysosomal V0 subunit D1
mm10_v2_chr2_+_131210501_131210604	0.944052	Ctcfl_Ctcf	ENSMUST00000110206.1|Ap5s1|ENSMUSG00000068264.5|adaptor-related protein 5 complex, sigma 1 subunit
mm10_v2_chr2_+_164785823_164785991	0.942735	Ctcfl_Ctcf	ENSMUST00000174070.1|Snx21|ENSMUSG00000050373.7|sorting nexin family member 21 	ENSMUST00000172577.1|Snx21|ENSMUSG00000050373.7|sorting nexin family member 21 	ENSMUST00000056181.6|Snx21|ENSMUSG00000050373.7|sorting nexin family member 21
mm10_v2_chr8_-_123515333_123515437	0.942244	Ctcfl_Ctcf	ENSMUST00000177240.1|Dbndd1|ENSMUSG00000031970.10|dysbindin (dystrobrevin binding protein 1) domain containing 1
mm10_v2_chr7_-_13009795_13009856	0.92775	Ctcfl_Ctcf	ENSMUST00000051390.7|Zbtb45|ENSMUSG00000049600.7|zinc finger and BTB domain containing 45 	ENSMUST00000172240.1|Zbtb45|ENSMUSG00000049600.7|zinc finger and BTB domain containing 45
mm10_v2_chr8_+_84946987_84947012	0.91911	Ctcfl_Ctcf	ENSMUST00000067472.7|Rtbdn|ENSMUSG00000048617.10|retbindin 	ENSMUST00000109740.2|Rtbdn|ENSMUSG00000048617.10|retbindin
mm10_v2_chr3_-_89245829_89245899	0.911356	Ctcfl_Ctcf	ENSMUST00000041022.8|Trim46|ENSMUSG00000042766.11|tripartite motif-containing 46
mm10_v2_chr3_+_145938004_145938063	0.90928	Ctcfl_Ctcf	ENSMUST00000039571.7|2410004B18Rik|ENSMUSG00000036873.7|RIKEN cDNA 2410004B18 gene
mm10_v2_chr8_-_107425029_107425056	0.907144	Ctcfl_Ctcf	ENSMUST00000003946.8|Nob1|ENSMUSG00000003848.8|NIN1/RPN12 binding protein 1 homolog (S. cerevisiae)
mm10_v2_chr11_+_84179852_84179863	0.905119	Ctcfl_Ctcf	ENSMUST00000136463.2|Acaca|ENSMUSG00000020532.12|acetyl-Coenzyme A carboxylase alpha
mm10_v2_chr18_+_38296635_38296719	0.905097	Ctcfl_Ctcf	ENSMUST00000072376.5|Rnf14|ENSMUSG00000060450.7|ring finger protein 14 	ENSMUST00000170811.1|Rnf14|ENSMUSG00000060450.7|ring finger protein 14
mm10_v2_chr2_-_58567157_58567288	0.902052	Ctcfl_Ctcf	ENSMUST00000056376.5|Acvr1|ENSMUSG00000026836.9|activin A receptor, type 1
mm10_v2_chr12_-_100725028_100725081	0.89452	Ctcfl_Ctcf	ENSMUST00000043599.6|Rps6ka5|ENSMUSG00000021180.8|ribosomal protein S6 kinase, polypeptide 5
mm10_v2_chr18_+_38296805_38296819	0.885442	Ctcfl_Ctcf	ENSMUST00000171461.1|Rnf14|ENSMUSG00000060450.7|ring finger protein 14
mm10_v2_chr17_+_47695171_47695204	0.874871	Ctcfl_Ctcf	ENSMUST00000113296.1|Frs3|ENSMUSG00000023266.5|fibroblast growth factor receptor substrate 3
mm10_v2_chr15_-_76817970_76818174	0.872887	Ctcfl_Ctcf	ENSMUST00000175843.1|Arhgap39|ENSMUSG00000033697.9|Rho GTPase activating protein 39 	ENSMUST00000177026.1|Arhgap39|ENSMUSG00000033697.9|Rho GTPase activating protein 39 	ENSMUST00000176736.1|Arhgap39|ENSMUSG00000033697.9|Rho GTPase activating protein 39 	ENSMUST00000036176.8|Arhgap39|ENSMUSG00000033697.9|Rho GTPase activating protein 39 	ENSMUST00000176219.1|Arhgap39|ENSMUSG00000033697.9|Rho GTPase activating protein 39 	ENSMUST00000077821.3|Arhgap39|ENSMUSG00000033697.9|Rho GTPase activating protein 39
mm10_v2_chr10_+_74967164_74967203	0.862855	Ctcfl_Ctcf	ENSMUST00000037813.4|Gnaz|ENSMUSG00000040009.5|guanine nucleotide binding protein, alpha z subunit
mm10_v2_chr7_+_16098458_16098585	0.845937	Ctcfl_Ctcf	ENSMUST00000006181.6|Napa|ENSMUSG00000006024.6|N-ethylmaleimide sensitive fusion protein attachment protein alpha
mm10_v2_chr13_+_58806564_58806622	0.844443	Ctcfl_Ctcf	ENSMUST00000109838.2|Ntrk2|ENSMUSG00000055254.8|neurotrophic tyrosine kinase, receptor, type 2
mm10_v2_chr8_+_20550331_20550331	0.842511	Ctcfl_Ctcf	ENSMUST00000178451.1|Gm21092|ENSMUSG00000095403.1|predicted gene, 21092
mm10_v2_chr2_+_164785994_164786071	0.840548	Ctcfl_Ctcf	ENSMUST00000152471.1|Snx21|ENSMUSG00000050373.7|sorting nexin family member 21
mm10_v2_chr15_-_89196457_89196478	0.834728	Ctcfl_Ctcf	ENSMUST00000078953.7|Dennd6b|ENSMUSG00000015377.9|DENN/MADD domain containing 6B
mm10_v2_chr16_+_95702044_95702094	0.832224	Ctcfl_Ctcf	ENSMUST00000023612.8|Ets2|ENSMUSG00000022895.8|E26 avian leukemia oncogene 2, 3' domain
mm10_v2_chr4_+_43046014_43046043	0.829174	Ctcfl_Ctcf	ENSMUST00000180426.1|Gm26881|ENSMUSG00000096974.1|predicted gene, 26881
mm10_v2_chrX_-_44790179_44790210	0.82844	Ctcfl_Ctcf	ENSMUST00000060481.2|Dcaf12l1|ENSMUSG00000045284.3|DDB1 and CUL4 associated factor 12-like 1
mm10_v2_chr2_-_166155624_166155671	0.818051	Ctcfl_Ctcf	ENSMUST00000109249.2|Sulf2|ENSMUSG00000006800.7|sulfatase 2
mm10_v2_chr2_+_70661556_70661692	0.805118	Ctcfl_Ctcf	ENSMUST00000112201.1|Gorasp2|ENSMUSG00000014959.6|golgi reassembly stacking protein 2 	ENSMUST00000028509.4|Gorasp2|ENSMUSG00000014959.6|golgi reassembly stacking protein 2 	ENSMUST00000133432.1|Gorasp2|ENSMUSG00000014959.6|golgi reassembly stacking protein 2 	ENSMUST00000112205.1|Gorasp2|ENSMUSG00000014959.6|golgi reassembly stacking protein 2
mm10_v2_chr2_+_157914618_157914653	0.80456	Ctcfl_Ctcf	ENSMUST00000109523.1|Vstm2l|ENSMUSG00000037843.6|V-set and transmembrane domain containing 2-like
mm10_v2_chr6_-_87335758_87335775	0.799548	Ctcfl_Ctcf	ENSMUST00000042025.9|Antxr1|ENSMUSG00000033420.10|anthrax toxin receptor 1
mm10_v2_chr7_-_127935429_127935450	0.790335	Ctcfl_Ctcf	ENSMUST00000141385.1|Prss36|ENSMUSG00000070371.5|protease, serine, 36 	ENSMUST00000156152.1|Prss36|ENSMUSG00000070371.5|protease, serine, 36
mm10_v2_chr9_-_57645561_57645672	0.785773	Ctcfl_Ctcf	ENSMUST00000034863.6|Csk|ENSMUSG00000032312.6|c-src tyrosine kinase
mm10_v2_chr2_-_153015331_153015427	0.782239	Ctcfl_Ctcf	ENSMUST00000028972.8|Pdrg1|ENSMUSG00000027472.8|p53 and DNA damage regulated 1
mm10_v2_chrX_-_134751331_134751424	0.777171	Ctcfl_Ctcf	ENSMUST00000113194.1|Armcx6|ENSMUSG00000050394.8|armadillo repeat containing, X-linked 6 	ENSMUST00000052431.5|Armcx6|ENSMUSG00000050394.8|armadillo repeat containing, X-linked 6
mm10_v2_chr8_-_69890967_69890967	0.774195	Ctcfl_Ctcf	ENSMUST00000152938.1|Yjefn3|ENSMUSG00000048967.9|YjeF N-terminal domain containing 3
mm10_v2_chrX_-_44790146_44790169	0.771117	Ctcfl_Ctcf	ENSMUST00000115056.1|Dcaf12l1|ENSMUSG00000045284.3|DDB1 and CUL4 associated factor 12-like 1
mm10_v2_chr2_+_25403044_25403115	0.769473	Ctcfl_Ctcf	ENSMUST00000071442.5|Npdc1|ENSMUSG00000015094.10|neural proliferation, differentiation and control 1
mm10_v2_chr7_-_97579382_97579501	0.769426	Ctcfl_Ctcf	ENSMUST00000151840.1|Aamdc|ENSMUSG00000035642.10|adipogenesis associated Mth938 domain containing 	ENSMUST00000135998.1|Aamdc|ENSMUSG00000035642.10|adipogenesis associated Mth938 domain containing 	ENSMUST00000144858.1|Aamdc|ENSMUSG00000035642.10|adipogenesis associated Mth938 domain containing 	ENSMUST00000146605.1|Aamdc|ENSMUSG00000035642.10|adipogenesis associated Mth938 domain containing 	ENSMUST00000072725.5|Aamdc|ENSMUSG00000035642.10|adipogenesis associated Mth938 domain containing 	ENSMUST00000138060.1|Aamdc|ENSMUSG00000035642.10|adipogenesis associated Mth938 domain containing 	ENSMUST00000154853.1|Aamdc|ENSMUSG00000035642.10|adipogenesis associated Mth938 domain containing 	ENSMUST00000136757.1|Aamdc|ENSMUSG00000035642.10|adipogenesis associated Mth938 domain containing 	ENSMUST00000124552.1|Aamdc|ENSMUSG00000035642.10|adipogenesis associated Mth938 domain containing
mm10_v2_chr8_-_84937347_84937367	0.761837	Ctcfl_Ctcf	ENSMUST00000109741.2|Mast1|ENSMUSG00000053693.10|microtubule associated serine/threonine kinase 1 	ENSMUST00000119820.1|Mast1|ENSMUSG00000053693.10|microtubule associated serine/threonine kinase 1
mm10_v2_chr11_+_101246405_101246567	0.758065	Ctcfl_Ctcf	ENSMUST00000122006.1|Ramp2|ENSMUSG00000001240.7|receptor (calcitonin) activity modifying protein 2 	ENSMUST00000151830.1|Ramp2|ENSMUSG00000001240.7|receptor (calcitonin) activity modifying protein 2
mm10_v2_chr3_-_63929376_63929472	0.742914	Ctcfl_Ctcf	ENSMUST00000061706.6|E130311K13Rik|ENSMUSG00000048581.6|RIKEN cDNA E130311K13 gene
mm10_v2_chr2_-_11502025_11502049	0.741601	Ctcfl_Ctcf	ENSMUST00000114846.2|Pfkfb3|ENSMUSG00000026773.13|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3
mm10_v2_chr1_-_16520106_16520133	0.738423	Ctcfl_Ctcf	ENSMUST00000162435.1|Stau2|ENSMUSG00000025920.13|staufen (RNA binding protein) homolog 2 (Drosophila)
mm10_v2_chr6_+_85915787_85915798	0.727046	Ctcfl_Ctcf	ENSMUST00000149026.1|Tprkb|ENSMUSG00000054226.7|Tp53rk binding protein
mm10_v2_chr6_+_135198034_135198109	0.72676	Ctcfl_Ctcf	ENSMUST00000130612.1|8430419L09Rik|ENSMUSG00000030207.9|RIKEN cDNA 8430419L09 gene
mm10_v2_chr9_+_47530173_47530373	0.719786	Ctcfl_Ctcf	ENSMUST00000114548.1|Cadm1|ENSMUSG00000032076.12|cell adhesion molecule 1 	ENSMUST00000152459.1|Cadm1|ENSMUSG00000032076.12|cell adhesion molecule 1 	ENSMUST00000143026.1|Cadm1|ENSMUSG00000032076.12|cell adhesion molecule 1 	ENSMUST00000085909.2|Cadm1|ENSMUSG00000032076.12|cell adhesion molecule 1 	ENSMUST00000114547.1|Cadm1|ENSMUSG00000032076.12|cell adhesion molecule 1 	ENSMUST00000034581.3|Cadm1|ENSMUSG00000032076.12|cell adhesion molecule 1
mm10_v2_chr14_-_55722176_55722211	0.718723	Ctcfl_Ctcf	ENSMUST00000169237.1|Rabggta|ENSMUSG00000040472.8|Rab geranylgeranyl transferase, a subunit 	ENSMUST00000062861.7|Rabggta|ENSMUSG00000040472.8|Rab geranylgeranyl transferase, a subunit
mm10_v2_chr9_+_108808356_108808441	0.717224	Ctcfl_Ctcf	ENSMUST00000035218.7|Nckipsd|ENSMUSG00000032598.7|NCK interacting protein with SH3 domain
mm10_v2_chr3_-_89773221_89773279	0.715516	Ctcfl_Ctcf	ENSMUST00000038450.1|4632404H12Rik|ENSMUSG00000042579.1|RIKEN cDNA 4632404H12 gene
mm10_v2_chr2_+_131210363_131210476	0.707331	Ctcfl_Ctcf	ENSMUST00000110210.1|Ap5s1|ENSMUSG00000068264.5|adaptor-related protein 5 complex, sigma 1 subunit 	ENSMUST00000089506.5|Ap5s1|ENSMUSG00000068264.5|adaptor-related protein 5 complex, sigma 1 subunit 	ENSMUST00000110208.1|Ap5s1|ENSMUSG00000068264.5|adaptor-related protein 5 complex, sigma 1 subunit
mm10_v2_chr13_-_54749627_54749697	0.706824	Ctcfl_Ctcf	ENSMUST00000099506.1|Gprin1|ENSMUSG00000069227.4|G protein-regulated inducer of neurite outgrowth 1
mm10_v2_chr2_-_11502067_11502080	0.702365	Ctcfl_Ctcf	ENSMUST00000028114.6|Pfkfb3|ENSMUSG00000026773.13|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 	ENSMUST00000049849.6|Pfkfb3|ENSMUSG00000026773.13|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3
mm10_v2_chr1_+_118321834_118321882	0.700944	Ctcfl_Ctcf	ENSMUST00000027626.6|Mki67ip|ENSMUSG00000026377.6|Mki67 (FHA domain) interacting nucleolar phosphoprotein 	ENSMUST00000112688.3|Mki67ip|ENSMUSG00000026377.6|Mki67 (FHA domain) interacting nucleolar phosphoprotein
mm10_v2_chr6_+_135197977_135198023	0.699193	Ctcfl_Ctcf	ENSMUST00000111915.1|8430419L09Rik|ENSMUSG00000030207.9|RIKEN cDNA 8430419L09 gene 	ENSMUST00000111916.1|8430419L09Rik|ENSMUSG00000030207.9|RIKEN cDNA 8430419L09 gene
mm10_v2_chr19_+_57611020_57611079	0.697988	Ctcfl_Ctcf	ENSMUST00000077282.5|Atrnl1|ENSMUSG00000054843.8|attractin like 1
mm10_v2_chr18_+_37411674_37411674	0.695895	Ctcfl_Ctcf	ENSMUST00000051126.2|Pcdhb10|ENSMUSG00000045657.2|protocadherin beta 10
mm10_v2_chr14_-_55722223_55722264	0.695779	Ctcfl_Ctcf	ENSMUST00000163889.1|Rabggta|ENSMUSG00000040472.8|Rab geranylgeranyl transferase, a subunit
mm10_v2_chr5_+_35278566_35278566	0.695587	Ctcfl_Ctcf	ENSMUST00000049545.5|Adra2c|ENSMUSG00000045318.5|adrenergic receptor, alpha 2c
mm10_v2_chr14_-_70520254_70520268	0.694572	Ctcfl_Ctcf	ENSMUST00000022693.7|Bmp1|ENSMUSG00000022098.9|bone morphogenetic protein 1
mm10_v2_chr5_-_135078224_135078266	0.692786	Ctcfl_Ctcf	ENSMUST00000067935.4|Vps37d|ENSMUSG00000043614.7|vacuolar protein sorting 37D (yeast) 	ENSMUST00000076203.2|Vps37d|ENSMUSG00000043614.7|vacuolar protein sorting 37D (yeast)
mm10_v2_chr1_-_150392719_150392762	0.689597	Ctcfl_Ctcf	ENSMUST00000006167.6|BC003331|ENSMUSG00000006010.8|cDNA sequence BC003331 	ENSMUST00000094477.2|BC003331|ENSMUSG00000006010.8|cDNA sequence BC003331 	ENSMUST00000097547.3|BC003331|ENSMUSG00000006010.8|cDNA sequence BC003331
mm10_v2_chr11_+_50225315_50225429	0.687241	Ctcfl_Ctcf	ENSMUST00000041725.7|Mgat4b|ENSMUSG00000036620.8|mannoside acetylglucosaminyltransferase 4, isoenzyme B
mm10_v2_chr2_-_11502090_11502126	0.685689	Ctcfl_Ctcf	ENSMUST00000179584.1|Pfkfb3|ENSMUSG00000026773.13|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 	ENSMUST00000170196.2|Pfkfb3|ENSMUSG00000026773.13|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 	ENSMUST00000171188.2|Pfkfb3|ENSMUSG00000026773.13|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 	ENSMUST00000114845.3|Pfkfb3|ENSMUSG00000026773.13|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 	ENSMUST00000114844.1|Pfkfb3|ENSMUSG00000026773.13|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 	ENSMUST00000100411.2|Pfkfb3|ENSMUSG00000026773.13|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3
mm10_v2_chr6_+_85915709_85915770	0.679677	Ctcfl_Ctcf	ENSMUST00000113751.1|Tprkb|ENSMUSG00000054226.7|Tp53rk binding protein 	ENSMUST00000113753.1|Tprkb|ENSMUSG00000054226.7|Tp53rk binding protein 	ENSMUST00000113752.1|Tprkb|ENSMUSG00000054226.7|Tp53rk binding protein 	ENSMUST00000067137.7|Tprkb|ENSMUSG00000054226.7|Tp53rk binding protein
mm10_v2_chr8_+_107031218_107031229	0.670427	Ctcfl_Ctcf	ENSMUST00000034388.9|Vps4a|ENSMUSG00000031913.9|vacuolar protein sorting 4a (yeast)
mm10_v2_chr15_-_36496722_36496808	0.669285	Ctcfl_Ctcf	ENSMUST00000057486.7|Ankrd46|ENSMUSG00000048307.7|ankyrin repeat domain 46
mm10_v2_chr10_-_80561528_80561560	0.665393	Ctcfl_Ctcf	ENSMUST00000057910.9|Rexo1|ENSMUSG00000047417.11|REX1, RNA exonuclease 1 homolog (S. cerevisiae)
mm10_v2_chr17_-_27029009_27029009	0.664951	Ctcfl_Ctcf	ENSMUST00000078691.5|Bak1|ENSMUSG00000057789.7|BCL2-antagonist/killer 1
mm10_v2_chr6_+_47835650_47835725	0.663862	Ctcfl_Ctcf	ENSMUST00000079881.4|Zfp398|ENSMUSG00000062519.7|zinc finger protein 398 	ENSMUST00000114598.1|Zfp398|ENSMUSG00000062519.7|zinc finger protein 398
mm10_v2_chr19_-_4305955_4306044	0.659177	Ctcfl_Ctcf	ENSMUST00000025791.5|Adrbk1|ENSMUSG00000024858.7|adrenergic receptor kinase, beta 1
mm10_v2_chr8_-_122551316_122551333	0.658518	Ctcfl_Ctcf	ENSMUST00000067252.7|Piezo1|ENSMUSG00000014444.10|piezo-type mechanosensitive ion channel component 1
mm10_v2_chr13_-_54749849_54749893	0.639934	Ctcfl_Ctcf	ENSMUST00000135343.1|Gprin1|ENSMUSG00000069227.4|G protein-regulated inducer of neurite outgrowth 1
mm10_v2_chr9_-_108452377_108452412	0.638228	Ctcfl_Ctcf	ENSMUST00000035232.7|Klhdc8b|ENSMUSG00000032609.7|kelch domain containing 8B
mm10_v2_chr19_-_47464406_47464450	0.637841	Ctcfl_Ctcf	ENSMUST00000111800.2|Sh3pxd2a|ENSMUSG00000053617.5|SH3 and PX domains 2A 	ENSMUST00000081619.2|Sh3pxd2a|ENSMUSG00000053617.5|SH3 and PX domains 2A
mm10_v2_chr12_+_80518990_80519087	0.634645	Ctcfl_Ctcf	ENSMUST00000021558.6|Galnt16|ENSMUSG00000021130.7|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 16
mm10_v2_chr5_+_35057059_35057096	0.634463	Ctcfl_Ctcf	ENSMUST00000050709.3|Dok7|ENSMUSG00000044716.6|docking protein 7
mm10_v2_chr15_+_100761741_100761797	0.634207	Ctcfl_Ctcf	ENSMUST00000023776.6|Slc4a8|ENSMUSG00000023032.6|solute carrier family 4 (anion exchanger), member 8
mm10_v2_chr4_-_133602168_133602168	0.631955	Ctcfl_Ctcf	ENSMUST00000057311.3|Sfn|ENSMUSG00000047281.3|stratifin
mm10_v2_chr7_-_67759735_67759759	0.630236	Ctcfl_Ctcf	ENSMUST00000074233.4|Synm|ENSMUSG00000030554.9|synemin, intermediate filament protein 	ENSMUST00000051389.8|Synm|ENSMUSG00000030554.9|synemin, intermediate filament protein
mm10_v2_chr6_+_87887814_87888016	0.62129	Ctcfl_Ctcf	ENSMUST00000113607.3|Copg1|ENSMUSG00000030058.11|coatomer protein complex, subunit gamma 1 	ENSMUST00000049966.5|Copg1|ENSMUSG00000030058.11|coatomer protein complex, subunit gamma 1
mm10_v2_chr18_+_37504264_37504296	0.620167	Ctcfl_Ctcf	ENSMUST00000052179.6|Pcdhb20|ENSMUSG00000046191.6|protocadherin beta 20
mm10_v2_chr4_+_152039315_152039356	0.616826	Ctcfl_Ctcf	ENSMUST00000084116.6|Nol9|ENSMUSG00000028948.10|nucleolar protein 9 	ENSMUST00000105663.1|Nol9|ENSMUSG00000028948.10|nucleolar protein 9 	ENSMUST00000103197.3|Nol9|ENSMUSG00000028948.10|nucleolar protein 9
mm10_v2_chr8_+_111536492_111536640	0.612151	Ctcfl_Ctcf	ENSMUST00000168428.1|Znrf1|ENSMUSG00000033545.8|zinc and ring finger 1 	ENSMUST00000171182.1|Znrf1|ENSMUSG00000033545.8|zinc and ring finger 1
mm10_v2_chr11_-_59163281_59163323	0.607591	Ctcfl_Ctcf	ENSMUST00000069631.2|Iba57|ENSMUSG00000049287.5|IBA57, iron-sulfur cluster assembly homolog (S. cerevisiae)
mm10_v2_chr9_+_106477269_106477352	0.606919	Ctcfl_Ctcf	ENSMUST00000047721.8|Rrp9|ENSMUSG00000041506.8|RRP9, small subunit (SSU) processome component, homolog (yeast)
mm10_v2_chr7_+_120917744_120917815	0.606692	Ctcfl_Ctcf	ENSMUST00000033173.7|Polr3e|ENSMUSG00000030880.7|polymerase (RNA) III (DNA directed) polypeptide E 	ENSMUST00000106483.2|Polr3e|ENSMUSG00000030880.7|polymerase (RNA) III (DNA directed) polypeptide E
mm10_v2_chr5_-_5266038_5266292	0.602588	Ctcfl_Ctcf	ENSMUST00000115451.1|Cdk14|ENSMUSG00000028926.9|cyclin-dependent kinase 14 	ENSMUST00000115452.1|Cdk14|ENSMUSG00000028926.9|cyclin-dependent kinase 14 	ENSMUST00000131392.1|Cdk14|ENSMUSG00000028926.9|cyclin-dependent kinase 14
mm10_v2_chr15_+_97964220_97964271	0.601193	Ctcfl_Ctcf	ENSMUST00000064200.7|Tmem106c|ENSMUSG00000052369.7|transmembrane protein 106C
mm10_v2_chr7_+_49778334_49778389	0.590891	Ctcfl_Ctcf	ENSMUST00000140656.1|Prmt3|ENSMUSG00000030505.10|protein arginine N-methyltransferase 3 	ENSMUST00000032715.6|Prmt3|ENSMUSG00000030505.10|protein arginine N-methyltransferase 3
mm10_v2_chr14_+_111675113_111675119	0.582099	Ctcfl_Ctcf	ENSMUST00000042767.7|Slitrk5|ENSMUSG00000033214.9|SLIT and NTRK-like family, member 5
mm10_v2_chr17_+_29268788_29268843	0.58072	Ctcfl_Ctcf	ENSMUST00000064709.5|BC004004|ENSMUSG00000052712.10|cDNA sequence BC004004 	ENSMUST00000120346.1|BC004004|ENSMUSG00000052712.10|cDNA sequence BC004004
mm10_v2_chr2_+_32609043_32609084	0.580124	Ctcfl_Ctcf	ENSMUST00000128811.1|St6galnac6|ENSMUSG00000026811.12|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6
mm10_v2_chr19_-_4283033_4283142	0.579665	Ctcfl_Ctcf	ENSMUST00000167215.1|Ankrd13d|ENSMUSG00000005986.9|ankyrin repeat domain 13 family, member D 	ENSMUST00000056888.6|Ankrd13d|ENSMUSG00000005986.9|ankyrin repeat domain 13 family, member D
mm10_v2_chr8_-_123515455_123515498	0.578403	Ctcfl_Ctcf	ENSMUST00000176286.1|Dbndd1|ENSMUSG00000031970.10|dysbindin (dystrobrevin binding protein 1) domain containing 1 	ENSMUST00000169210.1|Dbndd1|ENSMUSG00000031970.10|dysbindin (dystrobrevin binding protein 1) domain containing 1 	ENSMUST00000074879.5|Dbndd1|ENSMUSG00000031970.10|dysbindin (dystrobrevin binding protein 1) domain containing 1 	ENSMUST00000066198.7|Dbndd1|ENSMUSG00000031970.10|dysbindin (dystrobrevin binding protein 1) domain containing 1 	ENSMUST00000176155.1|Dbndd1|ENSMUSG00000031970.10|dysbindin (dystrobrevin binding protein 1) domain containing 1
mm10_v2_chr9_+_108460518_108460571	0.577715	Ctcfl_Ctcf	ENSMUST00000061209.5|Ccdc71|ENSMUSG00000049305.5|coiled-coil domain containing 71
mm10_v2_chrX_+_155262443_155262481	0.576528	Ctcfl_Ctcf	ENSMUST00000026324.9|Acot9|ENSMUSG00000025287.9|acyl-CoA thioesterase 9
mm10_v2_chr19_-_10869757_10869940	0.566405	Ctcfl_Ctcf	ENSMUST00000120524.1|Tmem132a|ENSMUSG00000024736.8|transmembrane protein 132A 	ENSMUST00000025645.7|Tmem132a|ENSMUSG00000024736.8|transmembrane protein 132A
mm10_v2_chr4_-_148038769_148038821	0.566177	Ctcfl_Ctcf	ENSMUST00000030879.5|Clcn6|ENSMUSG00000029016.7|chloride channel 6 	ENSMUST00000137724.1|Clcn6|ENSMUSG00000029016.7|chloride channel 6
mm10_v2_chr2_-_54085542_54085559	0.56376	Ctcfl_Ctcf	ENSMUST00000100089.2|Rprm|ENSMUSG00000075334.2|reprimo, TP53 dependent G2 arrest mediator candidate
mm10_v2_chr2_+_150749036_150749147	0.562559	Ctcfl_Ctcf	ENSMUST00000094467.5|Entpd6|ENSMUSG00000033068.10|ectonucleoside triphosphate diphosphohydrolase 6
mm10_v2_chr19_+_6400611_6400623	0.561407	Ctcfl_Ctcf	ENSMUST00000113467.1|Rasgrp2|ENSMUSG00000032946.10|RAS, guanyl releasing protein 2
mm10_v2_chr17_+_25773769_25773778	0.561129	Ctcfl_Ctcf	ENSMUST00000134108.1|Narfl|ENSMUSG00000002280.4|nuclear prelamin A recognition factor-like 	ENSMUST00000002350.4|Narfl|ENSMUSG00000002280.4|nuclear prelamin A recognition factor-like
mm10_v2_chrX_+_73503074_73503116	0.559214	Ctcfl_Ctcf	ENSMUST00000114479.1|Atp2b3|ENSMUSG00000031376.9|ATPase, Ca++ transporting, plasma membrane 3 	ENSMUST00000088429.1|Atp2b3|ENSMUSG00000031376.9|ATPase, Ca++ transporting, plasma membrane 3 	ENSMUST00000033744.5|Atp2b3|ENSMUSG00000031376.9|ATPase, Ca++ transporting, plasma membrane 3
mm10_v2_chr9_+_110333402_110333636	0.557302	Ctcfl_Ctcf	ENSMUST00000133114.1|Scap|ENSMUSG00000032485.8|SREBF chaperone 	ENSMUST00000125759.1|Scap|ENSMUSG00000032485.8|SREBF chaperone
mm10_v2_chrX_+_8892376_8892423	0.549011	Ctcfl_Ctcf	ENSMUST00000064196.3|B630019K06Rik|ENSMUSG00000052364.3|RIKEN cDNA B630019K06 gene
mm10_v2_chr19_+_44989073_44989101	0.548932	Ctcfl_Ctcf	ENSMUST00000026225.8|Sema4g|ENSMUSG00000025207.9|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G
mm10_v2_chr13_+_119487941_119488124	0.543856	Ctcfl_Ctcf	ENSMUST00000176171.1|Gm7120|ENSMUSG00000074634.5|predicted gene 7120 	ENSMUST00000177361.1|Gm7120|ENSMUSG00000074634.5|predicted gene 7120
mm10_v2_chrX_-_8175890_8175956	0.5355	Ctcfl_Ctcf	ENSMUST00000143984.1|Tbc1d25|ENSMUSG00000039201.3|TBC1 domain family, member 25
mm10_v2_chr17_-_24209377_24209416	0.53441	Ctcfl_Ctcf	ENSMUST00000024931.4|Ntn3|ENSMUSG00000079662.1|netrin 3
mm10_v2_chr5_-_115652974_115652992	0.532225	Ctcfl_Ctcf	ENSMUST00000121746.1|Ccdc64|ENSMUSG00000041609.10|coiled-coil domain containing 64 	ENSMUST00000118576.1|Ccdc64|ENSMUSG00000041609.10|coiled-coil domain containing 64
mm10_v2_chr7_+_28267809_28267932	0.528804	Ctcfl_Ctcf	ENSMUST00000059596.6|Eid2|ENSMUSG00000046058.6|EP300 interacting inhibitor of differentiation 2
mm10_v2_chrX_+_94234594_94234604	0.528588	Ctcfl_Ctcf	ENSMUST00000153900.1|Klhl15|ENSMUSG00000043929.10|kelch-like 15
mm10_v2_chr5_-_137502402_137502518	0.528107	Ctcfl_Ctcf	ENSMUST00000111035.1|Pop7|ENSMUSG00000029715.5|processing of precursor 7, ribonuclease P family, (S. cerevisiae) 	ENSMUST00000031728.4|Pop7|ENSMUSG00000029715.5|processing of precursor 7, ribonuclease P family, (S. cerevisiae)
mm10_v2_chr6_+_29279587_29279599	0.520548	Ctcfl_Ctcf	ENSMUST00000167131.1|Fam71f2|ENSMUSG00000079652.2|family with sequence similarity 71, member F2
mm10_v2_chr8_-_79294928_79294961	0.519997	Ctcfl_Ctcf	ENSMUST00000048718.2|Mmaa|ENSMUSG00000037022.2|methylmalonic aciduria (cobalamin deficiency) type A
mm10_v2_chr9_-_58204310_58204327	0.519033	Ctcfl_Ctcf	ENSMUST00000114144.2|Islr2|ENSMUSG00000051243.7|immunoglobulin superfamily containing leucine-rich repeat 2
mm10_v2_chr9_+_44772909_44772949	0.511171	Ctcfl_Ctcf	ENSMUST00000002099.3|Ift46|ENSMUSG00000002031.5|intraflagellar transport 46
mm10_v2_chr1_-_150393024_150393080	0.510736	Ctcfl_Ctcf	ENSMUST00000097546.2|BC003331|ENSMUSG00000006010.8|cDNA sequence BC003331 	ENSMUST00000111913.2|BC003331|ENSMUSG00000006010.8|cDNA sequence BC003331
mm10_v2_chr2_-_65238625_65238643	0.504617	Ctcfl_Ctcf	ENSMUST00000112429.2|Cobll1|ENSMUSG00000034903.12|Cobl-like 1 	ENSMUST00000102726.1|Cobll1|ENSMUSG00000034903.12|Cobl-like 1 	ENSMUST00000112430.1|Cobll1|ENSMUSG00000034903.12|Cobl-like 1
mm10_v2_chr19_-_4306214_4306369	0.489068	Ctcfl_Ctcf	ENSMUST00000171123.1|Adrbk1|ENSMUSG00000024858.7|adrenergic receptor kinase, beta 1 	ENSMUST00000088737.4|Adrbk1|ENSMUSG00000024858.7|adrenergic receptor kinase, beta 1
mm10_v2_chr18_+_37447641_37447674	0.486868	Ctcfl_Ctcf	ENSMUST00000052387.3|Pcdhb14|ENSMUSG00000044043.3|protocadherin beta 14
mm10_v2_chr1_+_105663855_105663866	0.485207	Ctcfl_Ctcf	ENSMUST00000086721.3|2310035C23Rik|ENSMUSG00000026319.7|RIKEN cDNA 2310035C23 gene 	ENSMUST00000039173.6|2310035C23Rik|ENSMUSG00000026319.7|RIKEN cDNA 2310035C23 gene
mm10_v2_chr9_+_44773027_44773100	0.484838	Ctcfl_Ctcf	ENSMUST00000125877.1|Ift46|ENSMUSG00000002031.5|intraflagellar transport 46
mm10_v2_chr11_+_101246960_101247093	0.483498	Ctcfl_Ctcf	ENSMUST00000107282.3|Ramp2|ENSMUSG00000001240.7|receptor (calcitonin) activity modifying protein 2
mm10_v2_chr10_-_94035789_94035817	0.48274	Ctcfl_Ctcf	ENSMUST00000123201.1|Vezt|ENSMUSG00000036099.10|vezatin, adherens junctions transmembrane protein 	ENSMUST00000119818.1|Vezt|ENSMUSG00000036099.10|vezatin, adherens junctions transmembrane protein
mm10_v2_chr6_+_88084473_88084527	0.476919	Ctcfl_Ctcf	ENSMUST00000032143.6|Rpn1|ENSMUSG00000030062.6|ribophorin I
mm10_v2_chr2_-_155514796_155514860	0.47276	Ctcfl_Ctcf	ENSMUST00000029131.4|Ggt7|ENSMUSG00000027603.9|gamma-glutamyltransferase 7
mm10_v2_chr11_-_82908360_82908411	0.469216	Ctcfl_Ctcf	ENSMUST00000103213.3|Nle1|ENSMUSG00000020692.8|notchless homolog 1 (Drosophila)
mm10_v2_chr6_-_106800051_106800095	0.468378	Ctcfl_Ctcf	ENSMUST00000013882.7|Crbn|ENSMUSG00000005362.8|cereblon 	ENSMUST00000049675.4|Crbn|ENSMUSG00000005362.8|cereblon 	ENSMUST00000113239.3|Crbn|ENSMUSG00000005362.8|cereblon
mm10_v2_chr2_+_164460945_164461018	0.466908	Ctcfl_Ctcf	ENSMUST00000072452.4|Sys1|ENSMUSG00000045503.10|SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae)
mm10_v2_chr5_+_115559467_115559499	0.464133	Ctcfl_Ctcf	ENSMUST00000086519.5|Rplp0|ENSMUSG00000067274.4|ribosomal protein, large, P0
mm10_v2_chr11_+_114668524_114668626	0.461144	Ctcfl_Ctcf	ENSMUST00000106602.3|Rpl38|ENSMUSG00000057322.6|ribosomal protein L38 	ENSMUST00000077915.3|Rpl38|ENSMUSG00000057322.6|ribosomal protein L38 	ENSMUST00000106599.1|Rpl38|ENSMUSG00000057322.6|ribosomal protein L38 	ENSMUST00000082092.4|Rpl38|ENSMUSG00000057322.6|ribosomal protein L38
mm10_v2_chr17_+_27685197_27685233	0.459145	Ctcfl_Ctcf	ENSMUST00000097360.2|Pacsin1|ENSMUSG00000040276.8|protein kinase C and casein kinase substrate in neurons 1
mm10_v2_chr1_+_59912972_59913027	0.458525	Ctcfl_Ctcf	ENSMUST00000036540.5|Fam117b|ENSMUSG00000041040.6|family with sequence similarity 117, member B
mm10_v2_chr12_+_76765527_76765598	0.458128	Ctcfl_Ctcf	ENSMUST00000041262.7|Churc1|ENSMUSG00000090258.1|churchill domain containing 1 	ENSMUST00000126408.1|Churc1|ENSMUSG00000090258.1|churchill domain containing 1 	ENSMUST00000110399.2|Churc1|ENSMUSG00000090258.1|churchill domain containing 1 	ENSMUST00000137826.1|Fntb|ENSMUSG00000033373.10|farnesyltransferase, CAAX box, beta
mm10_v2_chr7_+_24884611_24884644	0.456045	Ctcfl_Ctcf	ENSMUST00000108428.1|Rps19|ENSMUSG00000040952.10|ribosomal protein S19
mm10_v2_chr14_-_65098031_65098106	0.445536	Ctcfl_Ctcf	ENSMUST00000022550.7|Extl3|ENSMUSG00000021978.8|exostoses (multiple)-like 3
mm10_v2_chr16_+_96145391_96145448	0.444585	Ctcfl_Ctcf	ENSMUST00000023913.8|Wrb|ENSMUSG00000023147.9|tryptophan rich basic protein 	ENSMUST00000135448.1|Wrb|ENSMUSG00000023147.9|tryptophan rich basic protein
mm10_v2_chr9_-_44268156_44268187	0.441931	Ctcfl_Ctcf	ENSMUST00000169651.1|Nlrx1|ENSMUSG00000032109.8|NLR family member X1
mm10_v2_chr7_+_25317067_25317164	0.441184	Ctcfl_Ctcf	ENSMUST00000128119.1|Megf8|ENSMUSG00000045039.9|multiple EGF-like-domains 8
mm10_v2_chr7_-_141437829_141437892	0.441154	Ctcfl_Ctcf	ENSMUST00000019226.7|Slc25a22|ENSMUSG00000019082.11|solute carrier family 25 (mitochondrial carrier, glutamate), member 22
mm10_v2_chr6_+_50110186_50110383	0.437896	Ctcfl_Ctcf	ENSMUST00000166318.1|Mpp6|ENSMUSG00000038388.8|membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6) 	ENSMUST00000036236.8|Mpp6|ENSMUSG00000038388.8|membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6) 	ENSMUST00000036225.8|Mpp6|ENSMUSG00000038388.8|membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)
mm10_v2_chr9_+_44773191_44773263	0.437434	Ctcfl_Ctcf	ENSMUST00000147559.1|Ift46|ENSMUSG00000002031.5|intraflagellar transport 46
mm10_v2_chr8_+_83666827_83666882	0.429021	Ctcfl_Ctcf	ENSMUST00000019608.5|Ptger1|ENSMUSG00000019464.5|prostaglandin E receptor 1 (subtype EP1)
mm10_v2_chr11_+_4135167_4135222	0.427381	Ctcfl_Ctcf	ENSMUST00000003677.4|Rnf215|ENSMUSG00000003581.8|ring finger protein 215 	ENSMUST00000145705.1|Rnf215|ENSMUSG00000003581.8|ring finger protein 215
mm10_v2_chr2_-_112368021_112368036	0.425657	Ctcfl_Ctcf	ENSMUST00000028551.3|Emc4|ENSMUSG00000027131.3|ER membrane protein complex subunit 4
mm10_v2_chr10_+_81292961_81293005	0.424718	Ctcfl_Ctcf	ENSMUST00000163075.1|Pip5k1c|ENSMUSG00000034902.11|phosphatidylinositol-4-phosphate 5-kinase, type 1 gamma 	ENSMUST00000105327.3|Pip5k1c|ENSMUSG00000034902.11|phosphatidylinositol-4-phosphate 5-kinase, type 1 gamma 	ENSMUST00000045469.8|Pip5k1c|ENSMUSG00000034902.11|phosphatidylinositol-4-phosphate 5-kinase, type 1 gamma
mm10_v2_chr6_+_108783059_108783116	0.423706	Ctcfl_Ctcf	ENSMUST00000032196.6|Arl8b|ENSMUSG00000030105.6|ADP-ribosylation factor-like 8B
mm10_v2_chr8_-_87472576_87472597	0.423594	Ctcfl_Ctcf	ENSMUST00000034076.8|Cbln1|ENSMUSG00000031654.9|cerebellin 1 precursor protein
mm10_v2_chr7_+_24884651_24884714	0.421541	Ctcfl_Ctcf	ENSMUST00000153451.2|Rps19|ENSMUSG00000040952.10|ribosomal protein S19 	ENSMUST00000108429.1|Rps19|ENSMUSG00000040952.10|ribosomal protein S19
mm10_v2_chr6_+_89643982_89644007	0.421009	Ctcfl_Ctcf	ENSMUST00000000828.6|Txnrd3|ENSMUSG00000000811.7|thioredoxin reductase 3 	ENSMUST00000101171.1|Txnrd3|ENSMUSG00000000811.7|thioredoxin reductase 3
mm10_v2_chr6_-_85137743_85137781	0.419955	Ctcfl_Ctcf	ENSMUST00000174769.1|Spr|ENSMUSG00000033735.7|sepiapterin reductase 	ENSMUST00000174286.1|Spr|ENSMUSG00000033735.7|sepiapterin reductase 	ENSMUST00000045986.7|Spr|ENSMUSG00000033735.7|sepiapterin reductase
mm10_v2_chr2_-_152831665_152831735	0.419746	Ctcfl_Ctcf	ENSMUST00000156688.1|Bcl2l1|ENSMUSG00000007659.12|BCL2-like 1 	ENSMUST00000007803.5|Bcl2l1|ENSMUSG00000007659.12|BCL2-like 1
mm10_v2_chr7_-_141437587_141437650	0.414977	Ctcfl_Ctcf	ENSMUST00000172654.1|Slc25a22|ENSMUSG00000019082.11|solute carrier family 25 (mitochondrial carrier, glutamate), member 22 	ENSMUST00000106006.1|Slc25a22|ENSMUSG00000019082.11|solute carrier family 25 (mitochondrial carrier, glutamate), member 22
mm10_v2_chr8_+_83566671_83566815	0.414555	Ctcfl_Ctcf	ENSMUST00000036996.5|Ndufb7|ENSMUSG00000033938.5|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 7
mm10_v2_chr9_+_110333340_110333389	0.413938	Ctcfl_Ctcf	ENSMUST00000098350.3|Scap|ENSMUSG00000032485.8|SREBF chaperone
mm10_v2_chr9_+_71215779_71215792	0.412822	Ctcfl_Ctcf	ENSMUST00000034723.5|Aldh1a2|ENSMUSG00000013584.5|aldehyde dehydrogenase family 1, subfamily A2
mm10_v2_chr5_+_115559505_115559578	0.412533	Ctcfl_Ctcf	ENSMUST00000156359.1|Rplp0|ENSMUSG00000067274.4|ribosomal protein, large, P0 	ENSMUST00000152976.1|Rplp0|ENSMUSG00000067274.4|ribosomal protein, large, P0
mm10_v2_chr11_-_94549165_94549222	0.411449	Ctcfl_Ctcf	ENSMUST00000040487.3|Rsad1|ENSMUSG00000039096.4|radical S-adenosyl methionine domain containing 1
mm10_v2_chr19_-_43752924_43753001	0.410732	Ctcfl_Ctcf	ENSMUST00000045562.5|Cox15|ENSMUSG00000040018.9|cytochrome c oxidase assembly protein 15
mm10_v2_chr2_-_65567465_65567495	0.408626	Ctcfl_Ctcf	ENSMUST00000066432.5|Scn3a|ENSMUSG00000057182.8|sodium channel, voltage-gated, type III, alpha
mm10_v2_chr15_-_99772395_99772462	0.407659	Ctcfl_Ctcf	ENSMUST00000109035.4|Cers5|ENSMUSG00000023021.9|ceramide synthase 5
mm10_v2_chr13_+_94976344_94976422	0.404859	Ctcfl_Ctcf	ENSMUST00000160115.1|Wdr41|ENSMUSG00000042015.10|WD repeat domain 41 	ENSMUST00000160801.1|Wdr41|ENSMUSG00000042015.10|WD repeat domain 41 	ENSMUST00000056512.7|Wdr41|ENSMUSG00000042015.10|WD repeat domain 41 	ENSMUST00000046437.6|Wdr41|ENSMUSG00000042015.10|WD repeat domain 41
mm10_v2_chr9_-_67043953_67043962	0.403685	Ctcfl_Ctcf	ENSMUST00000113690.1|Tpm1|ENSMUSG00000032366.9|tropomyosin 1, alpha
mm10_v2_chr10_+_128748455_128748538	0.399888	Ctcfl_Ctcf	ENSMUST00000065210.8|Wibg|ENSMUSG00000064030.8|within bgcn homolog (Drosophila)
mm10_v2_chr15_+_99295087_99295279	0.39854	Ctcfl_Ctcf	ENSMUST00000128352.1|Prpf40b|ENSMUSG00000023007.9|PRP40 pre-mRNA processing factor 40 homolog B (yeast) 	ENSMUST00000145482.1|Prpf40b|ENSMUSG00000023007.9|PRP40 pre-mRNA processing factor 40 homolog B (yeast)
mm10_v2_chr1_-_16519284_16519336	0.39614	Ctcfl_Ctcf	ENSMUST00000162751.1|Stau2|ENSMUSG00000025920.13|staufen (RNA binding protein) homolog 2 (Drosophila) 	ENSMUST00000027052.6|Stau2|ENSMUSG00000025920.13|staufen (RNA binding protein) homolog 2 (Drosophila) 	ENSMUST00000149320.2|Stau2|ENSMUSG00000025920.13|staufen (RNA binding protein) homolog 2 (Drosophila)
mm10_v2_chr19_+_57361009_57361113	0.394803	Ctcfl_Ctcf	ENSMUST00000036407.4|Fam160b1|ENSMUSG00000033478.4|family with sequence similarity 160, member B1
mm10_v2_chr11_+_3514861_3514894	0.392751	Ctcfl_Ctcf	ENSMUST00000094469.4|Selm|ENSMUSG00000075702.9|selenoprotein M
mm10_v2_chr8_-_85119637_85119694	0.382974	Ctcfl_Ctcf	ENSMUST00000098550.3|Zfp791|ENSMUSG00000074194.3|zinc finger protein 791
mm10_v2_chr15_+_100469034_100469075	0.382716	Ctcfl_Ctcf	ENSMUST00000037001.8|Letmd1|ENSMUSG00000037353.8|LETM1 domain containing 1
mm10_v2_chr14_-_57999236_57999273	0.382472	Ctcfl_Ctcf	ENSMUST00000022543.8|Micu2|ENSMUSG00000021973.8|mitochondrial calcium uptake 2
mm10_v2_chr1_-_16520020_16520039	0.37399	Ctcfl_Ctcf	ENSMUST00000144138.2|Stau2|ENSMUSG00000025920.13|staufen (RNA binding protein) homolog 2 (Drosophila) 	ENSMUST00000145092.1|Stau2|ENSMUSG00000025920.13|staufen (RNA binding protein) homolog 2 (Drosophila)
mm10_v2_chr5_+_123907175_123907292	0.373394	Ctcfl_Ctcf	ENSMUST00000023869.8|Denr|ENSMUSG00000023106.9|density-regulated protein
mm10_v2_chr16_-_17911303_17911354	0.371241	Ctcfl_Ctcf	ENSMUST00000003621.8|Dgcr14|ENSMUSG00000003527.8|DiGeorge syndrome critical region gene 14
mm10_v2_chr2_+_3284202_3284220	0.370303	Ctcfl_Ctcf	ENSMUST00000081932.6|Nmt2|ENSMUSG00000026643.10|N-myristoyltransferase 2
mm10_v2_chr6_+_124931378_124931425	0.369797	Ctcfl_Ctcf	ENSMUST00000032214.7|Mlf2|ENSMUSG00000030120.8|myeloid leukemia factor 2 	ENSMUST00000180095.1|Mlf2|ENSMUSG00000030120.8|myeloid leukemia factor 2
mm10_v2_chr5_+_147957310_147957357	0.368757	Ctcfl_Ctcf	ENSMUST00000085558.4|Mtus2|ENSMUSG00000029651.10|microtubule associated tumor suppressor candidate 2 	ENSMUST00000129092.1|Mtus2|ENSMUSG00000029651.10|microtubule associated tumor suppressor candidate 2
mm10_v2_chr1_-_65179058_65179181	0.367683	Ctcfl_Ctcf	ENSMUST00000097709.4|Idh1|ENSMUSG00000025950.10|isocitrate dehydrogenase 1 (NADP+), soluble
mm10_v2_chr2_-_12301914_12301922	0.366667	Ctcfl_Ctcf	ENSMUST00000028106.4|Itga8|ENSMUSG00000026768.4|integrin alpha 8
mm10_v2_chr10_-_94035705_94035769	0.366642	Ctcfl_Ctcf	ENSMUST00000118077.1|Vezt|ENSMUSG00000036099.10|vezatin, adherens junctions transmembrane protein 	ENSMUST00000118205.1|Vezt|ENSMUSG00000036099.10|vezatin, adherens junctions transmembrane protein 	ENSMUST00000047711.6|Vezt|ENSMUSG00000036099.10|vezatin, adherens junctions transmembrane protein
mm10_v2_chr10_-_80577285_80577327	0.36629	Ctcfl_Ctcf	ENSMUST00000038558.8|Klf16|ENSMUSG00000035397.8|Kruppel-like factor 16
mm10_v2_chr6_-_85915653_85915692	0.365961	Ctcfl_Ctcf	ENSMUST00000161198.2|Cml1|ENSMUSG00000057103.10|camello-like 1
mm10_v2_chr17_+_47688992_47689030	0.365593	Ctcfl_Ctcf	ENSMUST00000156118.1|Frs3|ENSMUSG00000023266.5|fibroblast growth factor receptor substrate 3
mm10_v2_chr15_+_76368884_76368936	0.364985	Ctcfl_Ctcf	ENSMUST00000023213.6|Fam203a|ENSMUSG00000022554.6|family with sequence similarity 203, member A
mm10_v2_chr4_+_126148457_126148532	0.363868	Ctcfl_Ctcf	ENSMUST00000106150.2|Eva1b|ENSMUSG00000050212.4|eva-1 homolog B (C. elegans)
mm10_v2_chr5_-_114823460_114823475	0.357302	Ctcfl_Ctcf	ENSMUST00000140374.1|Gm20499|ENSMUSG00000092252.1|predicted gene 20499 	ENSMUST00000100850.4|2610524H06Rik|ENSMUSG00000092486.1|RIKEN cDNA 2610524H06 gene
mm10_v2_chr6_+_124663027_124663174	0.356133	Ctcfl_Ctcf	ENSMUST00000004381.7|Lpcat3|ENSMUSG00000004270.7|lysophosphatidylcholine acyltransferase 3
mm10_v2_chr1_-_193130201_193130257	0.355613	Ctcfl_Ctcf	ENSMUST00000085555.1|Diexf|ENSMUSG00000016181.4|digestive organ expansion factor homolog (zebrafish)
mm10_v2_chr19_-_40612160_40612255	0.35458	Ctcfl_Ctcf	ENSMUST00000132452.1|Tctn3|ENSMUSG00000025008.9|tectonic family member 3 	ENSMUST00000135795.1|Tctn3|ENSMUSG00000025008.9|tectonic family member 3 	ENSMUST00000025981.8|Tctn3|ENSMUSG00000025008.9|tectonic family member 3
mm10_v2_chr9_+_44772951_44772964	0.354344	Ctcfl_Ctcf	ENSMUST00000128150.1|Ift46|ENSMUSG00000002031.5|intraflagellar transport 46
mm10_v2_chr11_+_101733011_101733041	0.351884	Ctcfl_Ctcf	ENSMUST00000129741.1|Dhx8|ENSMUSG00000034931.9|DEAH (Asp-Glu-Ala-His) box polypeptide 8
mm10_v2_chr11_-_93968293_93968308	0.348435	Ctcfl_Ctcf	ENSMUST00000170303.1|Gm20390|ENSMUSG00000091228.1|predicted gene 20390
mm10_v2_chr8_-_41417042_41417135	0.344488	Ctcfl_Ctcf	ENSMUST00000033999.6|Frg1|ENSMUSG00000031590.7|FSHD region gene 1
mm10_v2_chr11_+_94629741_94629834	0.342596	Ctcfl_Ctcf	ENSMUST00000021239.6|Lrrc59|ENSMUSG00000020869.8|leucine rich repeat containing 59
mm10_v2_chr11_-_58938851_58938923	0.337633	Ctcfl_Ctcf	ENSMUST00000094151.5|Rnf187|ENSMUSG00000020496.8|ring finger protein 187
mm10_v2_chr7_-_120670256_120670343	0.336821	Ctcfl_Ctcf	ENSMUST00000033178.2|Pdzd9|ENSMUSG00000030887.3|PDZ domain containing 9
mm10_v2_chr13_+_94976435_94976452	0.334938	Ctcfl_Ctcf	ENSMUST00000160409.1|Wdr41|ENSMUSG00000042015.10|WD repeat domain 41 	ENSMUST00000159647.1|Wdr41|ENSMUSG00000042015.10|WD repeat domain 41 	ENSMUST00000167155.1|Wdr41|ENSMUSG00000042015.10|WD repeat domain 41
mm10_v2_chr11_-_93968242_93968281	0.333257	Ctcfl_Ctcf	ENSMUST00000107844.2|Nme1|ENSMUSG00000037601.5|NME/NM23 nucleoside diphosphate kinase 1
mm10_v2_chr2_-_65567505_65567627	0.331992	Ctcfl_Ctcf	ENSMUST00000100069.2|Scn3a|ENSMUSG00000057182.8|sodium channel, voltage-gated, type III, alpha
mm10_v2_chr2_+_91650169_91650237	0.329744	Ctcfl_Ctcf	ENSMUST00000090614.4|Arhgap1|ENSMUSG00000027247.10|Rho GTPase activating protein 1
mm10_v2_chr19_+_4962306_4962332	0.327385	Ctcfl_Ctcf	ENSMUST00000025836.4|Mrpl11|ENSMUSG00000024902.4|mitochondrial ribosomal protein L11
mm10_v2_chr14_-_52279238_52279339	0.325978	Ctcfl_Ctcf	ENSMUST00000167116.1|Rab2b|ENSMUSG00000022159.10|RAB2B, member RAS oncogene family 	ENSMUST00000100631.4|Rab2b|ENSMUSG00000022159.10|RAB2B, member RAS oncogene family
mm10_v2_chr16_+_16302955_16302987	0.325895	Ctcfl_Ctcf	ENSMUST00000159962.1|Yars2|ENSMUSG00000022792.10|tyrosyl-tRNA synthetase 2 (mitochondrial) 	ENSMUST00000059955.8|Yars2|ENSMUSG00000022792.10|tyrosyl-tRNA synthetase 2 (mitochondrial)
mm10_v2_chr19_+_46056539_46056586	0.324069	Ctcfl_Ctcf	ENSMUST00000111899.1|Pprc1|ENSMUSG00000055491.7|peroxisome proliferative activated receptor, gamma, coactivator-related 1 	ENSMUST00000099392.3|Pprc1|ENSMUSG00000055491.7|peroxisome proliferative activated receptor, gamma, coactivator-related 1 	ENSMUST00000062322.4|Pprc1|ENSMUSG00000055491.7|peroxisome proliferative activated receptor, gamma, coactivator-related 1
mm10_v2_chr2_-_33431324_33431324	0.316864	Ctcfl_Ctcf	ENSMUST00000113158.1|Zbtb34|ENSMUSG00000068966.4|zinc finger and BTB domain containing 34
mm10_v2_chr19_-_10880370_10880411	0.316719	Ctcfl_Ctcf	ENSMUST00000133303.1|Tmem109|ENSMUSG00000034659.8|transmembrane protein 109
mm10_v2_chr9_-_109059711_109059771	0.315659	Ctcfl_Ctcf	ENSMUST00000061973.4|Trex1|ENSMUSG00000049734.8|three prime repair exonuclease 1
mm10_v2_chr11_+_98682554_98682573	0.312246	Ctcfl_Ctcf	ENSMUST00000017365.8|Psmd3|ENSMUSG00000017221.8|proteasome (prosome, macropain) 26S subunit, non-ATPase, 3
mm10_v2_chr6_+_17463826_17463829	0.309354	Ctcfl_Ctcf	ENSMUST00000140070.1|Met|ENSMUSG00000009376.9|met proto-oncogene
mm10_v2_chr8_-_94918012_94918098	0.308498	Ctcfl_Ctcf	ENSMUST00000077955.5|Ccdc102a|ENSMUSG00000063605.5|coiled-coil domain containing 102A
mm10_v2_chr10_-_128525859_128525880	0.305943	Ctcfl_Ctcf	ENSMUST00000026427.6|Esyt1|ENSMUSG00000025366.7|extended synaptotagmin-like protein 1
mm10_v2_chr5_+_30921556_30921583	0.30593	Ctcfl_Ctcf	ENSMUST00000031053.8|Khk|ENSMUSG00000029162.9|ketohexokinase
mm10_v2_chr2_+_25428699_25428715	0.303677	Ctcfl_Ctcf	ENSMUST00000102919.3|Abca2|ENSMUSG00000026944.12|ATP-binding cassette, sub-family A (ABC1), member 2
mm10_v2_chr5_-_5380185_5380229	0.302967	Ctcfl_Ctcf	ENSMUST00000030763.6|Cdk14|ENSMUSG00000028926.9|cyclin-dependent kinase 14
mm10_v2_chr11_-_97574040_97574064	0.302657	Ctcfl_Ctcf	ENSMUST00000107593.1|Srcin1|ENSMUSG00000038453.9|SRC kinase signaling inhibitor 1
mm10_v2_chr4_-_129121234_129121315	0.302224	Ctcfl_Ctcf	ENSMUST00000030572.3|Hpca|ENSMUSG00000028785.6|hippocalcin
mm10_v2_chr3_+_54735536_54735586	0.296676	Ctcfl_Ctcf	ENSMUST00000044567.3|Alg5|ENSMUSG00000036632.3|asparagine-linked glycosylation 5 (dolichyl-phosphate beta-glucosyltransferase)
mm10_v2_chr19_-_24280551_24280615	0.295328	Ctcfl_Ctcf	ENSMUST00000081333.4|Fxn|ENSMUSG00000059363.4|frataxin
mm10_v2_chr19_-_6141402_6141424	0.295258	Ctcfl_Ctcf	ENSMUST00000025893.5|Arl2|ENSMUSG00000024944.5|ADP-ribosylation factor-like 2
mm10_v2_chr9_+_110333276_110333327	0.293003	Ctcfl_Ctcf	ENSMUST00000125823.1|Scap|ENSMUSG00000032485.8|SREBF chaperone 	ENSMUST00000131328.1|Scap|ENSMUSG00000032485.8|SREBF chaperone
mm10_v2_chr1_-_36557517_36557561	0.2928	Ctcfl_Ctcf	ENSMUST00000114990.1|Sema4c|ENSMUSG00000026121.7|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C 	ENSMUST00000128104.1|Sema4c|ENSMUSG00000026121.7|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C 	ENSMUST00000027295.4|Sema4c|ENSMUSG00000026121.7|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C
mm10_v2_chr5_+_76140700_76140730	0.291563	Ctcfl_Ctcf	ENSMUST00000152642.1|Srd5a3|ENSMUSG00000029233.9|steroid 5 alpha-reductase 3 	ENSMUST00000127278.1|Srd5a3|ENSMUSG00000029233.9|steroid 5 alpha-reductase 3
mm10_v2_chr11_-_98438941_98439008	0.291281	Ctcfl_Ctcf	ENSMUST00000002655.7|Mien1|ENSMUSG00000002580.7|migration and invasion enhancer 1
mm10_v2_chr2_+_91650116_91650133	0.290835	Ctcfl_Ctcf	ENSMUST00000111331.2|Arhgap1|ENSMUSG00000027247.10|Rho GTPase activating protein 1
mm10_v2_chr16_+_4684070_4684137	0.289108	Ctcfl_Ctcf	ENSMUST00000060067.5|Dnaja3|ENSMUSG00000004069.10|DnaJ (Hsp40) homolog, subfamily A, member 3 	ENSMUST00000115854.3|Dnaja3|ENSMUSG00000004069.10|DnaJ (Hsp40) homolog, subfamily A, member 3
mm10_v2_chr9_-_43105718_43105793	0.283311	Ctcfl_Ctcf	ENSMUST00000165665.1|Arhgef12|ENSMUSG00000059495.7|Rho guanine nucleotide exchange factor (GEF) 12
mm10_v2_chr4_+_155847393_155847467	0.283135	Ctcfl_Ctcf	ENSMUST00000030948.9|Dvl1|ENSMUSG00000029071.10|dishevelled, dsh homolog 1 (Drosophila) 	ENSMUST00000168552.1|Dvl1|ENSMUSG00000029071.10|dishevelled, dsh homolog 1 (Drosophila)
mm10_v2_chr6_-_85915604_85915640	0.281489	Ctcfl_Ctcf	ENSMUST00000174369.1|Cml1|ENSMUSG00000057103.10|camello-like 1
mm10_v2_chr10_-_116950366_116950432	0.278268	Ctcfl_Ctcf	ENSMUST00000020375.6|Rab3ip|ENSMUSG00000064181.5|RAB3A interacting protein
mm10_v2_chr1_-_171222435_171222471	0.278028	Ctcfl_Ctcf	ENSMUST00000147246.1|Tomm40l|ENSMUSG00000005674.3|translocase of outer mitochondrial membrane 40 homolog-like (yeast) 	ENSMUST00000111326.1|Tomm40l|ENSMUSG00000005674.3|translocase of outer mitochondrial membrane 40 homolog-like (yeast) 	ENSMUST00000138184.1|Tomm40l|ENSMUSG00000005674.3|translocase of outer mitochondrial membrane 40 homolog-like (yeast)
mm10_v2_chr10_+_79793553_79793621	0.277523	Ctcfl_Ctcf	ENSMUST00000046945.6|Palm|ENSMUSG00000035863.7|paralemmin 	ENSMUST00000105379.2|Palm|ENSMUSG00000035863.7|paralemmin
mm10_v2_chr2_-_152831112_152831326	0.275394	Ctcfl_Ctcf	ENSMUST00000128172.1|Bcl2l1|ENSMUSG00000007659.12|BCL2-like 1
mm10_v2_chr10_+_128459236_128459248	0.270947	Ctcfl_Ctcf	ENSMUST00000105235.2|Smarcc2|ENSMUSG00000025369.8|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2 	ENSMUST00000099131.3|Smarcc2|ENSMUSG00000025369.8|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2 	ENSMUST00000026433.7|Smarcc2|ENSMUSG00000025369.8|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2
mm10_v2_chr2_+_28513105_28513126	0.270755	Ctcfl_Ctcf	ENSMUST00000135803.1|Ralgds|ENSMUSG00000026821.9|ral guanine nucleotide dissociation stimulator
mm10_v2_chr14_+_101653967_101654048	0.269776	Ctcfl_Ctcf	ENSMUST00000002289.6|Uchl3|ENSMUSG00000022111.8|ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase)
mm10_v2_chr13_+_55105290_55105399	0.266999	Ctcfl_Ctcf	ENSMUST00000161315.1|Zfp346|ENSMUSG00000021481.5|zinc finger protein 346 	ENSMUST00000021937.5|Zfp346|ENSMUSG00000021481.5|zinc finger protein 346 	ENSMUST00000159278.1|Zfp346|ENSMUSG00000021481.5|zinc finger protein 346 	ENSMUST00000159147.1|Zfp346|ENSMUSG00000021481.5|zinc finger protein 346 	ENSMUST00000161077.1|Zfp346|ENSMUSG00000021481.5|zinc finger protein 346
mm10_v2_chr2_+_152669461_152669539	0.266999	Ctcfl_Ctcf	ENSMUST00000125366.1|H13|ENSMUSG00000019188.10|histocompatibility 13 	ENSMUST00000109825.1|H13|ENSMUSG00000019188.10|histocompatibility 13 	ENSMUST00000089059.2|H13|ENSMUSG00000019188.10|histocompatibility 13 	ENSMUST00000079247.3|H13|ENSMUSG00000019188.10|histocompatibility 13
mm10_v2_chr7_+_24884809_24884917	0.261703	Ctcfl_Ctcf	ENSMUST00000156372.1|Rps19|ENSMUSG00000040952.10|ribosomal protein S19 	ENSMUST00000124035.1|Rps19|ENSMUSG00000040952.10|ribosomal protein S19
mm10_v2_chr19_+_53142756_53142778	0.258781	Ctcfl_Ctcf	ENSMUST00000050096.7|Add3|ENSMUSG00000025026.8|adducin 3 (gamma)
mm10_v2_chr11_+_101732950_101732965	0.256117	Ctcfl_Ctcf	ENSMUST00000039152.7|Dhx8|ENSMUSG00000034931.9|DEAH (Asp-Glu-Ala-His) box polypeptide 8
mm10_v2_chr11_+_116671658_116671708	0.255875	Ctcfl_Ctcf	ENSMUST00000106378.1|1810032O08Rik|ENSMUSG00000020812.11|RIKEN cDNA 1810032O08 gene 	ENSMUST00000144049.1|1810032O08Rik|ENSMUSG00000020812.11|RIKEN cDNA 1810032O08 gene
mm10_v2_chr6_+_113604749_113604772	0.255663	Ctcfl_Ctcf	ENSMUST00000035725.5|Brk1|ENSMUSG00000033940.7|BRICK1, SCAR/WAVE actin-nucleating complex subunit
mm10_v2_chr18_+_42511496_42511521	0.25384	Ctcfl_Ctcf	ENSMUST00000025375.7|Tcerg1|ENSMUSG00000024498.9|transcription elongation regulator 1 (CA150)
mm10_v2_chr1_+_82839449_82839518	0.253425	Ctcfl_Ctcf	ENSMUST00000113444.1|Agfg1|ENSMUSG00000026159.7|ArfGAP with FG repeats 1 	ENSMUST00000063380.4|Agfg1|ENSMUSG00000026159.7|ArfGAP with FG repeats 1
mm10_v2_chr2_+_3284232_3284290	0.25001	Ctcfl_Ctcf	ENSMUST00000102989.3|Nmt2|ENSMUSG00000026643.10|N-myristoyltransferase 2 	ENSMUST00000091504.4|Nmt2|ENSMUSG00000026643.10|N-myristoyltransferase 2
mm10_v2_chr11_-_116138862_116138873	0.248589	Ctcfl_Ctcf	ENSMUST00000106439.1|Mrpl38|ENSMUSG00000020775.7|mitochondrial ribosomal protein L38
mm10_v2_chr5_-_110269816_110269913	0.24639	Ctcfl_Ctcf	ENSMUST00000059229.9|Pgam5|ENSMUSG00000029500.10|phosphoglycerate mutase family member 5 	ENSMUST00000112505.2|Pgam5|ENSMUSG00000029500.10|phosphoglycerate mutase family member 5
mm10_v2_chr2_+_151494182_151494203	0.245471	Ctcfl_Ctcf	ENSMUST00000089140.6|Nsfl1c|ENSMUSG00000027455.10|NSFL1 (p97) cofactor (p47)
mm10_v2_chr4_+_127243784_127243856	0.244581	Ctcfl_Ctcf	ENSMUST00000142029.1|Smim12|ENSMUSG00000042380.8|small integral membrane protein 12
mm10_v2_chr11_-_120581196_120581380	0.241813	Ctcfl_Ctcf	ENSMUST00000067936.5|Arhgdia|ENSMUSG00000025132.7|Rho GDP dissociation inhibitor (GDI) alpha
mm10_v2_chrX_-_133898399_133898429	0.239913	Ctcfl_Ctcf	ENSMUST00000087557.5|Tspan6|ENSMUSG00000067377.6|tetraspanin 6
mm10_v2_chr5_+_76140271_76140317	0.239754	Ctcfl_Ctcf	ENSMUST00000031143.6|Srd5a3|ENSMUSG00000029233.9|steroid 5 alpha-reductase 3
mm10_v2_chr10_+_29313227_29313281	0.237418	Ctcfl_Ctcf	ENSMUST00000161605.1|Echdc1|ENSMUSG00000019883.4|enoyl Coenzyme A hydratase domain containing 1
mm10_v2_chr12_+_21111778_21111954	0.235406	Ctcfl_Ctcf	ENSMUST00000050990.9|Asap2|ENSMUSG00000052632.9|ArfGAP with SH3 domain, ankyrin repeat and PH domain 2
mm10_v2_chr9_-_45906369_45906437	0.233066	Ctcfl_Ctcf	ENSMUST00000161187.1|Rnf214|ENSMUSG00000042790.9|ring finger protein 214
mm10_v2_chr5_+_3596066_3596256	0.231493	Ctcfl_Ctcf	ENSMUST00000006061.6|Pex1|ENSMUSG00000005907.8|peroxisomal biogenesis factor 1 	ENSMUST00000121291.1|Pex1|ENSMUSG00000005907.8|peroxisomal biogenesis factor 1 	ENSMUST00000142516.1|Pex1|ENSMUSG00000005907.8|peroxisomal biogenesis factor 1
mm10_v2_chr7_-_4524229_4524355	0.23139	Ctcfl_Ctcf	ENSMUST00000154913.1|Tnni3|ENSMUSG00000035458.8|troponin I, cardiac 3
mm10_v2_chrX_-_133898292_133898377	0.227384	Ctcfl_Ctcf	ENSMUST00000176718.1|Tspan6|ENSMUSG00000067377.6|tetraspanin 6 	ENSMUST00000176641.1|Tspan6|ENSMUSG00000067377.6|tetraspanin 6
mm10_v2_chr18_+_73863672_73863713	0.22658	Ctcfl_Ctcf	ENSMUST00000134847.1|Mro|ENSMUSG00000064036.9|maestro
mm10_v2_chr4_-_45108038_45108128	0.225913	Ctcfl_Ctcf	ENSMUST00000107809.2|Tomm5|ENSMUSG00000078713.2|translocase of outer mitochondrial membrane 5 homolog (yeast) 	ENSMUST00000107808.2|Tomm5|ENSMUSG00000078713.2|translocase of outer mitochondrial membrane 5 homolog (yeast) 	ENSMUST00000107807.1|Tomm5|ENSMUSG00000078713.2|translocase of outer mitochondrial membrane 5 homolog (yeast) 	ENSMUST00000107810.2|Tomm5|ENSMUSG00000078713.2|translocase of outer mitochondrial membrane 5 homolog (yeast)
mm10_v2_chr17_-_66101466_66101559	0.223717	Ctcfl_Ctcf	ENSMUST00000024909.8|Ndufv2|ENSMUSG00000024099.8|NADH dehydrogenase (ubiquinone) flavoprotein 2 	ENSMUST00000147484.1|Ndufv2|ENSMUSG00000024099.8|NADH dehydrogenase (ubiquinone) flavoprotein 2 	ENSMUST00000143987.1|Ndufv2|ENSMUSG00000024099.8|NADH dehydrogenase (ubiquinone) flavoprotein 2
mm10_v2_chr9_+_107888129_107888211	0.221716	Ctcfl_Ctcf	ENSMUST00000035202.2|Mon1a|ENSMUSG00000032583.2|MON1 homolog A (yeast)
mm10_v2_chr4_+_86575668_86575689	0.219521	Ctcfl_Ctcf	ENSMUST00000091064.6|Rraga|ENSMUSG00000070934.5|Ras-related GTP binding A
mm10_v2_chr11_-_101095367_101095439	0.219505	Ctcfl_Ctcf	ENSMUST00000019447.8|Psmc3ip|ENSMUSG00000019303.8|proteasome (prosome, macropain) 26S subunit, ATPase 3, interacting protein
mm10_v2_chr9_+_100643755_100643770	0.218206	Ctcfl_Ctcf	ENSMUST00000133388.1|Stag1|ENSMUSG00000037286.9|stromal antigen 1
mm10_v2_chr15_-_102350692_102350771	0.215755	Ctcfl_Ctcf	ENSMUST00000041208.7|Aaas|ENSMUSG00000036678.7|achalasia, adrenocortical insufficiency, alacrimia
mm10_v2_chr1_-_132367879_132367894	0.211517	Ctcfl_Ctcf	ENSMUST00000142609.1|Tmcc2|ENSMUSG00000042066.9|transmembrane and coiled-coil domains 2
mm10_v2_chr10_+_80292453_80292645	0.209485	Ctcfl_Ctcf	ENSMUST00000068408.7|Rps15|ENSMUSG00000063457.8|ribosomal protein S15 	ENSMUST00000062674.6|Rps15|ENSMUSG00000063457.8|ribosomal protein S15
mm10_v2_chr9_+_100643605_100643626	0.207434	Ctcfl_Ctcf	ENSMUST00000041418.6|Stag1|ENSMUSG00000037286.9|stromal antigen 1
mm10_v2_chr4_-_116464151_116464274	0.206776	Ctcfl_Ctcf	ENSMUST00000106486.1|Mast2|ENSMUSG00000003810.6|microtubule associated serine/threonine kinase 2 	ENSMUST00000106485.1|Mast2|ENSMUSG00000003810.6|microtubule associated serine/threonine kinase 2
mm10_v2_chrX_+_48623737_48623790	0.20508	Ctcfl_Ctcf	ENSMUST00000114936.1|Slc25a14|ENSMUSG00000031105.10|solute carrier family 25 (mitochondrial carrier, brain), member 14
mm10_v2_chr6_-_50596624_50596639	0.205059	Ctcfl_Ctcf	ENSMUST00000031852.4|4921507P07Rik|ENSMUSG00000029828.4|RIKEN cDNA 4921507P07 gene
mm10_v2_chr11_-_119086221_119086250	0.203572	Ctcfl_Ctcf	ENSMUST00000026665.7|Cbx4|ENSMUSG00000039989.7|chromobox 4
mm10_v2_chr17_-_63499983_63500075	0.198302	Ctcfl_Ctcf	ENSMUST00000024761.6|Fbxl17|ENSMUSG00000023965.7|F-box and leucine-rich repeat protein 17
mm10_v2_chr3_-_89998656_89998704	0.195007	Ctcfl_Ctcf	ENSMUST00000079724.4|Hax1|ENSMUSG00000027944.9|HCLS1 associated X-1
mm10_v2_chr9_+_100643448_100643542	0.194577	Ctcfl_Ctcf	ENSMUST00000146312.1|Stag1|ENSMUSG00000037286.9|stromal antigen 1 	ENSMUST00000129269.1|Stag1|ENSMUSG00000037286.9|stromal antigen 1
mm10_v2_chr5_-_139736291_139736336	0.193899	Ctcfl_Ctcf	ENSMUST00000044642.10|Micall2|ENSMUSG00000036718.11|MICAL-like 2
mm10_v2_chr5_-_3596071_3596118	0.192313	Ctcfl_Ctcf	ENSMUST00000121877.1|Rbm48|ENSMUSG00000040302.11|RNA binding motif protein 48
mm10_v2_chr7_+_4119525_4119555	0.190869	Ctcfl_Ctcf	ENSMUST00000119661.1|Ttyh1|ENSMUSG00000030428.10|tweety homolog 1 (Drosophila) 	ENSMUST00000129423.1|Ttyh1|ENSMUSG00000030428.10|tweety homolog 1 (Drosophila)
mm10_v2_chr4_-_43046196_43046220	0.190634	Ctcfl_Ctcf	ENSMUST00000036462.5|Fam214b|ENSMUSG00000036002.6|family with sequence similarity 214, member B
mm10_v2_chr8_-_70873477_70873501	0.190141	Ctcfl_Ctcf	ENSMUST00000007865.5|Ccdc124|ENSMUSG00000007721.5|coiled-coil domain containing 124
mm10_v2_chr5_+_144100387_144100436	0.188542	Ctcfl_Ctcf	ENSMUST00000041804.7|Lmtk2|ENSMUSG00000038970.7|lemur tyrosine kinase 2
mm10_v2_chr12_-_78861636_78861641	0.188354	Ctcfl_Ctcf	ENSMUST00000021536.7|Atp6v1d|ENSMUSG00000021114.8|ATPase, H+ transporting, lysosomal V1 subunit D
mm10_v2_chr10_+_86022189_86022253	0.187841	Ctcfl_Ctcf	ENSMUST00000120344.1|Fbxo7|ENSMUSG00000001786.8|F-box protein 7 	ENSMUST00000117597.1|Fbxo7|ENSMUSG00000001786.8|F-box protein 7
mm10_v2_chr11_-_86757483_86757572	0.184277	Ctcfl_Ctcf	ENSMUST00000060766.9|Cltc|ENSMUSG00000047126.11|clathrin, heavy polypeptide (Hc) 	ENSMUST00000103186.4|Cltc|ENSMUSG00000047126.11|clathrin, heavy polypeptide (Hc)
mm10_v2_chr2_-_30967859_30967933	0.183067	Ctcfl_Ctcf	ENSMUST00000028200.8|Tor1a|ENSMUSG00000026849.12|torsin family 1, member A (torsin A)
mm10_v2_chr3_+_89245952_89245978	0.181055	Ctcfl_Ctcf	ENSMUST00000040888.5|Krtcap2|ENSMUSG00000042747.6|keratinocyte associated protein 2
mm10_v2_chr7_-_46710642_46710687	0.178267	Ctcfl_Ctcf	ENSMUST00000143082.1|Saal1|ENSMUSG00000006763.6|serum amyloid A-like 1
mm10_v2_chr7_-_19749464_19749573	0.177391	Ctcfl_Ctcf	ENSMUST00000075447.7|Pvrl2|ENSMUSG00000062300.7|poliovirus receptor-related 2 	ENSMUST00000108450.3|Pvrl2|ENSMUSG00000062300.7|poliovirus receptor-related 2
mm10_v2_chr11_-_113751309_113751327	0.176447	Ctcfl_Ctcf	ENSMUST00000106616.1|Cdc42ep4|ENSMUSG00000041598.7|CDC42 effector protein (Rho GTPase binding) 4
mm10_v2_chr17_+_24352037_24352149	0.176224	Ctcfl_Ctcf	ENSMUST00000079594.5|Abca3|ENSMUSG00000024130.9|ATP-binding cassette, sub-family A (ABC1), member 3
mm10_v2_chr2_+_32151074_32151262	0.173872	Ctcfl_Ctcf	ENSMUST00000036691.7|Prrc2b|ENSMUSG00000039262.10|proline-rich coiled-coil 2B 	ENSMUST00000069817.8|Prrc2b|ENSMUSG00000039262.10|proline-rich coiled-coil 2B
mm10_v2_chr13_+_54621801_54621841	0.170813	Ctcfl_Ctcf	ENSMUST00000026991.9|Faf2|ENSMUSG00000025873.9|Fas associated factor family member 2 	ENSMUST00000137413.1|Faf2|ENSMUSG00000025873.9|Fas associated factor family member 2 	ENSMUST00000135232.1|Faf2|ENSMUSG00000025873.9|Fas associated factor family member 2 	ENSMUST00000124752.1|Faf2|ENSMUSG00000025873.9|Fas associated factor family member 2
mm10_v2_chr7_+_143069249_143069544	0.167448	Ctcfl_Ctcf	ENSMUST00000060433.3|Tssc4|ENSMUSG00000045752.6|tumor-suppressing subchromosomal transferable fragment 4 	ENSMUST00000133410.2|Tssc4|ENSMUSG00000045752.6|tumor-suppressing subchromosomal transferable fragment 4 	ENSMUST00000105920.1|Tssc4|ENSMUSG00000045752.6|tumor-suppressing subchromosomal transferable fragment 4 	ENSMUST00000177841.1|Tssc4|ENSMUSG00000045752.6|tumor-suppressing subchromosomal transferable fragment 4 	ENSMUST00000147995.1|Tssc4|ENSMUSG00000045752.6|tumor-suppressing subchromosomal transferable fragment 4 	ENSMUST00000137856.1|Tssc4|ENSMUSG00000045752.6|tumor-suppressing subchromosomal transferable fragment 4
mm10_v2_chr3_-_107696462_107696574	0.163398	Ctcfl_Ctcf	ENSMUST00000029490.8|Ahcyl1|ENSMUSG00000027893.8|S-adenosylhomocysteine hydrolase-like 1
mm10_v2_chr5_+_136116631_136116740	0.162596	Ctcfl_Ctcf	ENSMUST00000111127.1|Polr2j|ENSMUSG00000039771.7|polymerase (RNA) II (DNA directed) polypeptide J 	ENSMUST00000041366.7|Polr2j|ENSMUSG00000039771.7|polymerase (RNA) II (DNA directed) polypeptide J 	ENSMUST00000111129.1|Polr2j|ENSMUSG00000039771.7|polymerase (RNA) II (DNA directed) polypeptide J
mm10_v2_chr5_+_135806859_135806902	0.160109	Ctcfl_Ctcf	ENSMUST00000126232.1|Srrm3|ENSMUSG00000039860.13|serine/arginine repetitive matrix 3
mm10_v2_chrX_+_94234921_94234972	0.158707	Ctcfl_Ctcf	ENSMUST00000113908.1|Klhl15|ENSMUSG00000043929.10|kelch-like 15 	ENSMUST00000113916.3|Klhl15|ENSMUSG00000043929.10|kelch-like 15
mm10_v2_chr2_+_128967383_128967443	0.158469	Ctcfl_Ctcf	ENSMUST00000110320.2|Zc3h6|ENSMUSG00000042851.11|zinc finger CCCH type containing 6 	ENSMUST00000110319.2|Zc3h6|ENSMUSG00000042851.11|zinc finger CCCH type containing 6
mm10_v2_chr4_+_24898080_24898176	0.15826	Ctcfl_Ctcf	ENSMUST00000029925.3|Ndufaf4|ENSMUSG00000028261.7|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 4 	ENSMUST00000151249.1|Ndufaf4|ENSMUSG00000028261.7|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 4
mm10_v2_chr15_+_100870670_100870702	0.157518	Ctcfl_Ctcf	ENSMUST00000082209.6|Scn8a|ENSMUSG00000023033.8|sodium channel, voltage-gated, type VIII, alpha
mm10_v2_chr10_-_86022325_86022325	0.15591	Ctcfl_Ctcf	ENSMUST00000181665.1|A230060F14Rik|ENSMUSG00000097692.1|RIKEN cDNA A230060F14 gene
mm10_v2_chr7_-_45434590_45434709	0.155562	Ctcfl_Ctcf	ENSMUST00000107771.3|Ruvbl2|ENSMUSG00000003868.6|RuvB-like protein 2 	ENSMUST00000141761.1|Ruvbl2|ENSMUSG00000003868.6|RuvB-like protein 2
mm10_v2_chrX_+_20662898_20662909	0.153933	Ctcfl_Ctcf	ENSMUST00000001989.8|Uba1|ENSMUSG00000001924.9|ubiquitin-like modifier activating enzyme 1
mm10_v2_chr7_+_4119556_4119596	0.153718	Ctcfl_Ctcf	ENSMUST00000079415.5|Ttyh1|ENSMUSG00000030428.10|tweety homolog 1 (Drosophila)
mm10_v2_chr10_+_29313164_29313221	0.152786	Ctcfl_Ctcf	ENSMUST00000160399.1|Echdc1|ENSMUSG00000019883.4|enoyl Coenzyme A hydratase domain containing 1
mm10_v2_chr5_-_36398090_36398149	0.151443	Ctcfl_Ctcf	ENSMUST00000037370.7|Sorcs2|ENSMUSG00000029093.8|sortilin-related VPS10 domain containing receptor 2 	ENSMUST00000070720.6|Sorcs2|ENSMUSG00000029093.8|sortilin-related VPS10 domain containing receptor 2
mm10_v2_chr15_-_99772596_99772608	0.150734	Ctcfl_Ctcf	ENSMUST00000023762.6|Cers5|ENSMUSG00000023021.9|ceramide synthase 5
mm10_v2_chr6_+_127446819_127446872	0.14373	Ctcfl_Ctcf	ENSMUST00000112191.1|Parp11|ENSMUSG00000037997.6|poly (ADP-ribose) polymerase family, member 11
mm10_v2_chr7_+_112023469_112023566	0.142365	Ctcfl_Ctcf	ENSMUST00000106653.2|Usp47|ENSMUSG00000059263.7|ubiquitin specific peptidase 47
mm10_v2_chr11_-_70982987_70983026	0.139204	Ctcfl_Ctcf	ENSMUST00000078528.6|C1qbp|ENSMUSG00000018446.8|complement component 1, q subcomponent binding protein
mm10_v2_chr1_+_9545397_9545479	0.136564	Ctcfl_Ctcf	ENSMUST00000072079.7|Rrs1|ENSMUSG00000061024.7|RRS1 ribosome biogenesis regulator homolog (S. cerevisiae)
mm10_v2_chr10_-_118868903_118868903	0.136206	Ctcfl_Ctcf	ENSMUST00000004281.8|Dyrk2|ENSMUSG00000028630.8|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2
mm10_v2_chr13_-_49147931_49148037	0.13117	Ctcfl_Ctcf	ENSMUST00000162581.1|Wnk2|ENSMUSG00000037989.9|WNK lysine deficient protein kinase 2 	ENSMUST00000110097.2|Wnk2|ENSMUSG00000037989.9|WNK lysine deficient protein kinase 2 	ENSMUST00000049265.8|Wnk2|ENSMUSG00000037989.9|WNK lysine deficient protein kinase 2 	ENSMUST00000035538.6|Wnk2|ENSMUSG00000037989.9|WNK lysine deficient protein kinase 2 	ENSMUST00000110096.1|Wnk2|ENSMUSG00000037989.9|WNK lysine deficient protein kinase 2 	ENSMUST00000091623.3|Wnk2|ENSMUSG00000037989.9|WNK lysine deficient protein kinase 2
mm10_v2_chr4_-_149307506_149307703	0.12477	Ctcfl_Ctcf	ENSMUST00000055647.8|Kif1b|ENSMUSG00000063077.8|kinesin family member 1B 	ENSMUST00000030806.5|Kif1b|ENSMUSG00000063077.8|kinesin family member 1B 	ENSMUST00000060537.6|Kif1b|ENSMUSG00000063077.8|kinesin family member 1B
mm10_v2_chr11_-_23498025_23498044	0.121042	Ctcfl_Ctcf	ENSMUST00000020529.6|Ahsa2|ENSMUSG00000020288.7|AHA1, activator of heat shock protein ATPase 2
mm10_v2_chr11_+_68901538_68901635	0.120885	Ctcfl_Ctcf	ENSMUST00000073471.6|Rpl26|ENSMUSG00000060938.8|ribosomal protein L26 	ENSMUST00000101014.2|Rpl26|ENSMUSG00000060938.8|ribosomal protein L26 	ENSMUST00000128952.1|Rpl26|ENSMUSG00000060938.8|ribosomal protein L26 	ENSMUST00000167436.1|Rpl26|ENSMUSG00000060938.8|ribosomal protein L26
mm10_v2_chr17_+_24352017_24352028	0.119824	Ctcfl_Ctcf	ENSMUST00000039013.8|Abca3|ENSMUSG00000024130.9|ATP-binding cassette, sub-family A (ABC1), member 3
mm10_v2_chr2_+_31887262_31887344	0.116653	Ctcfl_Ctcf	ENSMUST00000138325.1|Lamc3|ENSMUSG00000026840.8|laminin gamma 3 	ENSMUST00000028187.6|Lamc3|ENSMUSG00000026840.8|laminin gamma 3
mm10_v2_chr16_-_20302358_20302401	0.116513	Ctcfl_Ctcf	ENSMUST00000048642.8|Parl|ENSMUSG00000033918.9|presenilin associated, rhomboid-like
mm10_v2_chr16_+_17276291_17276330	0.115051	Ctcfl_Ctcf	ENSMUST00000164950.1|Tmem191c|ENSMUSG00000055692.12|transmembrane protein 191C 	ENSMUST00000159242.1|Tmem191c|ENSMUSG00000055692.12|transmembrane protein 191C
mm10_v2_chr19_+_43689672_43689695	0.114105	Ctcfl_Ctcf	ENSMUST00000081079.5|Entpd7|ENSMUSG00000025192.7|ectonucleoside triphosphate diphosphohydrolase 7
mm10_v2_chr14_+_8080315_8080385	0.113068	Ctcfl_Ctcf	ENSMUST00000023924.3|Rpp14|ENSMUSG00000023156.3|ribonuclease P 14 subunit
mm10_v2_chr5_-_3596540_3596585	0.112575	Ctcfl_Ctcf	ENSMUST00000042753.7|Rbm48|ENSMUSG00000040302.11|RNA binding motif protein 48
mm10_v2_chr18_-_9450097_9450161	0.111778	Ctcfl_Ctcf	ENSMUST00000053917.4|Ccny|ENSMUSG00000024286.7|cyclin Y
mm10_v2_chr10_-_43540945_43541024	0.111019	Ctcfl_Ctcf	ENSMUST00000147196.1|1700021F05Rik|ENSMUSG00000019797.4|RIKEN cDNA 1700021F05 gene 	ENSMUST00000019932.3|1700021F05Rik|ENSMUSG00000019797.4|RIKEN cDNA 1700021F05 gene
mm10_v2_chr11_+_63132569_63132677	0.108921	Ctcfl_Ctcf	ENSMUST00000108701.1|Pmp22|ENSMUSG00000018217.6|peripheral myelin protein 22
mm10_v2_chr15_-_74709535_74709535	0.108666	Ctcfl_Ctcf	ENSMUST00000050234.2|Jrk|ENSMUSG00000046380.2|jerky
mm10_v2_chr2_-_164911586_164911757	0.104904	Ctcfl_Ctcf	ENSMUST00000041361.7|Zfp335|ENSMUSG00000039834.11|zinc finger protein 335
mm10_v2_chr3_+_89246397_89246493	0.103727	Ctcfl_Ctcf	ENSMUST00000168900.1|Krtcap2|ENSMUSG00000042747.6|keratinocyte associated protein 2
mm10_v2_chr4_-_141078302_141078357	0.102778	Ctcfl_Ctcf	ENSMUST00000030760.8|Necap2|ENSMUSG00000028923.8|NECAP endocytosis associated 2
mm10_v2_chr11_-_97573929_97574022	0.102009	Ctcfl_Ctcf	ENSMUST00000126287.1|Srcin1|ENSMUSG00000038453.9|SRC kinase signaling inhibitor 1 	ENSMUST00000107590.1|Srcin1|ENSMUSG00000038453.9|SRC kinase signaling inhibitor 1
mm10_v2_chr3_-_65529355_65529384	0.0942296	Ctcfl_Ctcf	ENSMUST00000099076.3|4931440P22Rik|ENSMUSG00000074580.5|RIKEN cDNA 4931440P22 gene
mm10_v2_chr5_-_5749317_5749340	0.0939685	Ctcfl_Ctcf	ENSMUST00000015796.2|Steap1|ENSMUSG00000015652.3|six transmembrane epithelial antigen of the prostate 1
mm10_v2_chr3_-_130060850_130060907	0.0935391	Ctcfl_Ctcf	ENSMUST00000001079.8|Sec24b|ENSMUSG00000001052.9|Sec24 related gene family, member B (S. cerevisiae)
mm10_v2_chr15_+_81744848_81744848	0.0930659	Ctcfl_Ctcf	ENSMUST00000109554.1|Zc3h7b|ENSMUSG00000022390.10|zinc finger CCCH type containing 7B
mm10_v2_chr5_-_117115972_117116010	0.0918768	Ctcfl_Ctcf	ENSMUST00000086471.5|Suds3|ENSMUSG00000066900.5|suppressor of defective silencing 3 homolog (S. cerevisiae) 	ENSMUST00000166397.1|Suds3|ENSMUSG00000066900.5|suppressor of defective silencing 3 homolog (S. cerevisiae)
mm10_v2_chr15_-_100495239_100495267	0.0916405	Ctcfl_Ctcf	ENSMUST00000061457.5|Csrnp2|ENSMUSG00000044636.5|cysteine-serine-rich nuclear protein 2
mm10_v2_chr8_+_71464910_71465000	0.0903915	Ctcfl_Ctcf	ENSMUST00000048914.6|Mrpl34|ENSMUSG00000034880.6|mitochondrial ribosomal protein L34
mm10_v2_chr15_-_99087817_99087817	0.0900844	Ctcfl_Ctcf	ENSMUST00000064462.3|C1ql4|ENSMUSG00000001076.6|complement component 1, q subcomponent-like 4
mm10_v2_chr13_-_113618549_113618565	0.0871135	Ctcfl_Ctcf	ENSMUST00000109241.3|Snx18|ENSMUSG00000042364.10|sorting nexin 18
mm10_v2_chr3_+_137918526_137918547	0.0841575	Ctcfl_Ctcf	ENSMUST00000168345.1|Lamtor3|ENSMUSG00000091512.1|late endosomal/lysosomal adaptor, MAPK and MTOR activator 3
mm10_v2_chr5_-_142905816_142905832	0.0837597	Ctcfl_Ctcf	ENSMUST00000171419.1|Actb|ENSMUSG00000029580.8|actin, beta
mm10_v2_chr9_-_110101010_110101087	0.0795132	Ctcfl_Ctcf	ENSMUST00000062368.6|Dhx30|ENSMUSG00000032480.11|DEAH (Asp-Glu-Ala-His) box polypeptide 30
mm10_v2_chr17_+_56613392_56613425	0.0794254	Ctcfl_Ctcf	ENSMUST00000080492.5|Rpl36|ENSMUSG00000057863.5|ribosomal protein L36
mm10_v2_chr1_-_182517447_182517525	0.0791623	Ctcfl_Ctcf	ENSMUST00000068505.8|Capn2|ENSMUSG00000026509.10|calpain 2
mm10_v2_chr7_+_108934405_108934430	0.0770771	Ctcfl_Ctcf	ENSMUST00000033342.6|Eif3f|ENSMUSG00000031029.6|eukaryotic translation initiation factor 3, subunit F
mm10_v2_chr16_-_20426322_20426372	0.075933	Ctcfl_Ctcf	ENSMUST00000115547.2|Abcc5|ENSMUSG00000022822.9|ATP-binding cassette, sub-family C (CFTR/MRP), member 5 	ENSMUST00000096199.4|Abcc5|ENSMUSG00000022822.9|ATP-binding cassette, sub-family C (CFTR/MRP), member 5
mm10_v2_chr15_-_89373810_89373829	0.0758707	Ctcfl_Ctcf	ENSMUST00000167643.2|Sco2|ENSMUSG00000091780.2|SCO cytochrome oxidase deficient homolog 2 (yeast)
mm10_v2_chr11_+_51967649_51967709	0.0741446	Ctcfl_Ctcf	ENSMUST00000102763.4|Cdkn2aipnl|ENSMUSG00000020392.8|CDKN2A interacting protein N-terminal like
mm10_v2_chr1_+_92910805_92910834	0.0740288	Ctcfl_Ctcf	ENSMUST00000179711.1|Rnpepl1|ENSMUSG00000026269.8|arginyl aminopeptidase (aminopeptidase B)-like 1
mm10_v2_chr19_-_32712287_32712336	0.069858	Ctcfl_Ctcf	ENSMUST00000070210.4|Atad1|ENSMUSG00000013662.5|ATPase family, AAA domain containing 1
mm10_v2_chr9_-_67043832_67043843	0.0681653	Ctcfl_Ctcf	ENSMUST00000113686.1|Tpm1|ENSMUSG00000032366.9|tropomyosin 1, alpha
mm10_v2_chr11_-_35834492_35834509	0.066158	Ctcfl_Ctcf	ENSMUST00000018992.3|Rars|ENSMUSG00000018848.4|arginyl-tRNA synthetase
mm10_v2_chr10_+_29313500_29313594	0.0620197	Ctcfl_Ctcf	ENSMUST00000020034.4|Echdc1|ENSMUSG00000019883.4|enoyl Coenzyme A hydratase domain containing 1
mm10_v2_chr10_+_80179482_80179531	0.060695	Ctcfl_Ctcf	ENSMUST00000003154.6|Efna2|ENSMUSG00000003070.6|ephrin A2
mm10_v2_chr2_+_146855861_146855926	0.0591915	Ctcfl_Ctcf	ENSMUST00000099278.2|Plk1s1|ENSMUSG00000074749.4|polo-like kinase 1 substrate 1 	ENSMUST00000156232.1|Plk1s1|ENSMUSG00000074749.4|polo-like kinase 1 substrate 1
mm10_v2_chr11_-_120581553_120581632	0.0561934	Ctcfl_Ctcf	ENSMUST00000106197.3|Arhgdia|ENSMUSG00000025132.7|Rho GDP dissociation inhibitor (GDI) alpha
mm10_v2_chr2_+_71055731_71055852	0.0561507	Ctcfl_Ctcf	ENSMUST00000154704.1|Dcaf17|ENSMUSG00000041966.12|DDB1 and CUL4 associated factor 17 	ENSMUST00000135357.1|Dcaf17|ENSMUSG00000041966.12|DDB1 and CUL4 associated factor 17 	ENSMUST00000064141.5|Dcaf17|ENSMUSG00000041966.12|DDB1 and CUL4 associated factor 17 	ENSMUST00000112159.2|Dcaf17|ENSMUSG00000041966.12|DDB1 and CUL4 associated factor 17 	ENSMUST00000102701.3|Dcaf17|ENSMUSG00000041966.12|DDB1 and CUL4 associated factor 17
mm10_v2_chr2_+_93187574_93187641	0.0556222	Ctcfl_Ctcf	ENSMUST00000090554.4|Trp53i11|ENSMUSG00000068735.8|transformation related protein 53 inducible protein 11
mm10_v2_chr8_+_114439655_114439710	0.0536937	Ctcfl_Ctcf	ENSMUST00000004756.7|Wwox|ENSMUSG00000004637.9|WW domain-containing oxidoreductase 	ENSMUST00000109108.2|Wwox|ENSMUSG00000004637.9|WW domain-containing oxidoreductase 	ENSMUST00000160862.1|Wwox|ENSMUSG00000004637.9|WW domain-containing oxidoreductase 	ENSMUST00000109107.2|Wwox|ENSMUSG00000004637.9|WW domain-containing oxidoreductase
mm10_v2_chr6_+_59208870_59208958	0.0525706	Ctcfl_Ctcf	ENSMUST00000062626.3|Tigd2|ENSMUSG00000049232.3|tigger transposable element derived 2
mm10_v2_chr1_+_34459746_34459814	0.0512482	Ctcfl_Ctcf	ENSMUST00000027302.7|Ptpn18|ENSMUSG00000026126.9|protein tyrosine phosphatase, non-receptor type 18
mm10_v2_chr9_+_108936648_108936715	0.0498864	Ctcfl_Ctcf	ENSMUST00000026743.8|Uqcrc1|ENSMUSG00000025651.9|ubiquinol-cytochrome c reductase core protein 1
mm10_v2_chr17_+_45563928_45563973	0.0495288	Ctcfl_Ctcf	ENSMUST00000041353.6|Slc35b2|ENSMUSG00000037089.9|solute carrier family 35, member B2
mm10_v2_chr3_+_19894855_19894894	0.0492007	Ctcfl_Ctcf	ENSMUST00000059704.4|4632415L05Rik|ENSMUSG00000048106.4|RIKEN cDNA 4632415L05 gene
mm10_v2_chr10_-_14705459_14705560	0.0464389	Ctcfl_Ctcf	ENSMUST00000149485.1|Vta1|ENSMUSG00000019868.10|Vps20-associated 1 homolog (S. cerevisiae) 	ENSMUST00000154132.1|Vta1|ENSMUSG00000019868.10|Vps20-associated 1 homolog (S. cerevisiae)
mm10_v2_chr14_+_25694170_25694233	0.0446518	Ctcfl_Ctcf	ENSMUST00000022419.6|Ppif|ENSMUSG00000021868.6|peptidylprolyl isomerase F (cyclophilin F)
mm10_v2_chr7_+_64501687_64501706	0.042831	Ctcfl_Ctcf	ENSMUST00000032732.8|Apba2|ENSMUSG00000030519.8|amyloid beta (A4) precursor protein-binding, family A, member 2
mm10_v2_chr7_+_64501949_64502048	0.0425403	Ctcfl_Ctcf	ENSMUST00000138829.1|Apba2|ENSMUSG00000030519.8|amyloid beta (A4) precursor protein-binding, family A, member 2
mm10_v2_chr5_+_30921825_30921866	0.0419578	Ctcfl_Ctcf	ENSMUST00000117435.1|Khk|ENSMUSG00000029162.9|ketohexokinase
mm10_v2_chr7_-_28372494_28372519	0.0407686	Ctcfl_Ctcf	ENSMUST00000119990.1|Plekhg2|ENSMUSG00000037552.11|pleckstrin homology domain containing, family G (with RhoGef domain) member 2
mm10_v2_chr2_-_121442574_121442614	0.0367902	Ctcfl_Ctcf	ENSMUST00000116432.1|Ell3|ENSMUSG00000027246.6|elongation factor RNA polymerase II-like 3
mm10_v2_chr8_+_13785615_13785661	0.0367633	Ctcfl_Ctcf	ENSMUST00000043767.7|Upf3a|ENSMUSG00000038398.7|UPF3 regulator of nonsense transcripts homolog A (yeast)
mm10_v2_chr2_+_32757234_32757319	0.036403	Ctcfl_Ctcf	ENSMUST00000009707.7|Tor2a|ENSMUSG00000009563.10|torsin family 2, member A 	ENSMUST00000177382.1|Tor2a|ENSMUSG00000009563.10|torsin family 2, member A 	ENSMUST00000140999.1|Tor2a|ENSMUSG00000009563.10|torsin family 2, member A
mm10_v2_chr11_+_4135233_4135282	0.0318621	Ctcfl_Ctcf	ENSMUST00000124670.1|Rnf215|ENSMUSG00000003581.8|ring finger protein 215
mm10_v2_chr17_-_24479034_24479083	0.0308008	Ctcfl_Ctcf	ENSMUST00000179163.1|Mlst8|ENSMUSG00000024142.8|MTOR associated protein, LST8 homolog (S. cerevisiae) 	ENSMUST00000070888.6|Mlst8|ENSMUSG00000024142.8|MTOR associated protein, LST8 homolog (S. cerevisiae)
mm10_v2_chr8_+_33517306_33517325	0.0301072	Ctcfl_Ctcf	ENSMUST00000124496.1|Tex15|ENSMUSG00000009628.8|testis expressed gene 15
mm10_v2_chr9_+_119357381_119357381	0.0286737	Ctcfl_Ctcf	ENSMUST00000039610.8|Xylb|ENSMUSG00000035769.8|xylulokinase homolog (H. influenzae)
mm10_v2_chr11_+_88973928_88973961	0.0249219	Ctcfl_Ctcf	ENSMUST00000036649.4|Coil|ENSMUSG00000033983.7|coilin 	ENSMUST00000107898.3|Coil|ENSMUSG00000033983.7|coilin
mm10_v2_chr4_+_53631460_53631505	0.0237848	Ctcfl_Ctcf	ENSMUST00000179534.1|Fsd1l|ENSMUSG00000054752.10|fibronectin type III and SPRY domain containing 1-like 	ENSMUST00000132151.1|Fsd1l|ENSMUSG00000054752.10|fibronectin type III and SPRY domain containing 1-like
mm10_v2_chr13_+_51100810_51100933	0.0213706	Ctcfl_Ctcf	ENSMUST00000095797.5|Spin1|ENSMUSG00000021395.10|spindlin 1
mm10_v2_chr6_+_83078606_83078691	0.0210411	Ctcfl_Ctcf	ENSMUST00000177177.1|Pcgf1|ENSMUSG00000069678.4|polycomb group ring finger 1 	ENSMUST00000176089.1|Pcgf1|ENSMUSG00000069678.4|polycomb group ring finger 1
mm10_v2_chr11_-_23497867_23497962	0.0208933	Ctcfl_Ctcf	ENSMUST00000128559.1|Ahsa2|ENSMUSG00000020288.7|AHA1, activator of heat shock protein ATPase 2 	ENSMUST00000147157.1|Ahsa2|ENSMUSG00000020288.7|AHA1, activator of heat shock protein ATPase 2 	ENSMUST00000109539.1|Ahsa2|ENSMUSG00000020288.7|AHA1, activator of heat shock protein ATPase 2
mm10_v2_chr1_+_161969179_161969259	0.0191584	Ctcfl_Ctcf	ENSMUST00000111594.2|Pigc|ENSMUSG00000026698.7|phosphatidylinositol glycan anchor biosynthesis, class C 	ENSMUST00000028021.6|Pigc|ENSMUSG00000026698.7|phosphatidylinositol glycan anchor biosynthesis, class C
mm10_v2_chr9_-_106887000_106887094	0.018195	Ctcfl_Ctcf	ENSMUST00000055843.7|Rbm15b|ENSMUSG00000045365.7|RNA binding motif protein 15B
mm10_v2_chr10_+_3973086_3973157	0.0165295	Ctcfl_Ctcf	ENSMUST00000117291.1|Mthfd1l|ENSMUSG00000040675.11|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like 	ENSMUST00000120585.1|Mthfd1l|ENSMUSG00000040675.11|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like 	ENSMUST00000043735.7|Mthfd1l|ENSMUSG00000040675.11|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like
mm10_v2_chr1_-_171247096_171247122	0.0151971	Ctcfl_Ctcf	ENSMUST00000013737.6|Ndufs2|ENSMUSG00000013593.6|NADH dehydrogenase (ubiquinone) Fe-S protein 2 	ENSMUST00000111318.1|Ndufs2|ENSMUSG00000013593.6|NADH dehydrogenase (ubiquinone) Fe-S protein 2
mm10_v2_chr17_+_72836678_72836717	0.0151056	Ctcfl_Ctcf	ENSMUST00000045174.5|Ypel5|ENSMUSG00000039770.5|yippee-like 5 (Drosophila)
mm10_v2_chr5_-_3893907_3893933	0.0147593	Ctcfl_Ctcf	ENSMUST00000117463.1|Mterf|ENSMUSG00000040429.5|mitochondrial transcription termination factor 	ENSMUST00000044746.4|Mterf|ENSMUSG00000040429.5|mitochondrial transcription termination factor
mm10_v2_chr10_+_84622365_84622437	0.0134263	Ctcfl_Ctcf	ENSMUST00000077175.5|Polr3b|ENSMUSG00000034453.7|polymerase (RNA) III (DNA directed) polypeptide B
mm10_v2_chr14_-_55758458_55758489	0.0129579	Ctcfl_Ctcf	ENSMUST00000001497.7|Cideb|ENSMUSG00000022219.9|cell death-inducing DNA fragmentation factor, alpha subunit-like effector B
mm10_v2_chr12_+_78861693_78861819	0.0118138	Ctcfl_Ctcf	ENSMUST00000071230.7|Eif2s1|ENSMUSG00000021116.9|eukaryotic translation initiation factor 2, subunit 1 alpha
mm10_v2_chr1_+_161969284_161969313	0.0116407	Ctcfl_Ctcf	ENSMUST00000160881.1|Pigc|ENSMUSG00000026698.7|phosphatidylinositol glycan anchor biosynthesis, class C 	ENSMUST00000159648.1|Pigc|ENSMUSG00000026698.7|phosphatidylinositol glycan anchor biosynthesis, class C
mm10_v2_chr18_+_75367529_75367561	0.00744586	Ctcfl_Ctcf	ENSMUST00000026999.3|Smad7|ENSMUSG00000025880.5|SMAD family member 7
mm10_v2_chr5_+_129725063_129725143	0.00649952	Ctcfl_Ctcf	ENSMUST00000086046.3|Gbas|ENSMUSG00000029432.6|glioblastoma amplified sequence
mm10_v2_chr4_+_103119286_103119403	0.00646934	Ctcfl_Ctcf	ENSMUST00000106857.1|Mier1|ENSMUSG00000028522.10|mesoderm induction early response 1 homolog (Xenopus laevis
mm10_v2_chr4_+_53631506_53631574	0.00506648	Ctcfl_Ctcf	ENSMUST00000159415.2|Fsd1l|ENSMUSG00000054752.10|fibronectin type III and SPRY domain containing 1-like 	ENSMUST00000163067.2|Fsd1l|ENSMUSG00000054752.10|fibronectin type III and SPRY domain containing 1-like
mm10_v2_chr12_-_4477138_4477196	0.00505153	Ctcfl_Ctcf	ENSMUST00000085814.3|Ncoa1|ENSMUSG00000020647.9|nuclear receptor coactivator 1
mm10_v2_chr17_+_3114957_3114982	0.0047543	Ctcfl_Ctcf	ENSMUST00000076734.6|Scaf8|ENSMUSG00000046201.8|SR-related CTD-associated factor 8
mm10_v2_chr6_+_83165920_83166004	0.0011576	Ctcfl_Ctcf	ENSMUST00000077407.5|Dctn1|ENSMUSG00000031865.9|dynactin 1 	ENSMUST00000113913.1|Dctn1|ENSMUSG00000031865.9|dynactin 1 	ENSMUST00000130212.1|Dctn1|ENSMUSG00000031865.9|dynactin 1
mm10_v2_chr7_+_64502090_64502155	0.000595486	Ctcfl_Ctcf	ENSMUST00000137732.1|Apba2|ENSMUSG00000030519.8|amyloid beta (A4) precursor protein-binding, family A, member 2
