mm10_v2_chr6_-_23248264_23248390	6.47667	Gli2	ENSMUST00000031709.5|Fezf1|ENSMUSG00000029697.5|Fez family zinc finger 1
mm10_v2_chrX_-_141725181_141725263	4.44883	Gli2	ENSMUST00000067841.7|Irs4|ENSMUSG00000054667.7|insulin receptor substrate 4
mm10_v2_chr8_+_127064022_127064086	3.20172	Gli2	ENSMUST00000160272.1|Pard3|ENSMUSG00000025812.11|par-3 (partitioning defective 3) homolog (C. elegans) 	ENSMUST00000079777.5|Pard3|ENSMUSG00000025812.11|par-3 (partitioning defective 3) homolog (C. elegans) 	ENSMUST00000162907.1|Pard3|ENSMUSG00000025812.11|par-3 (partitioning defective 3) homolog (C. elegans)
mm10_v2_chr6_-_72788952_72789061	3.18756	Gli2	ENSMUST00000114053.2|Tcf7l1|ENSMUSG00000055799.7|transcription factor 7 like 1 (T cell specific, HMG box)
mm10_v2_chr8_+_127064107_127064347	3.17704	Gli2	ENSMUST00000162536.1|Pard3|ENSMUSG00000025812.11|par-3 (partitioning defective 3) homolog (C. elegans) 	ENSMUST00000026921.6|Pard3|ENSMUSG00000025812.11|par-3 (partitioning defective 3) homolog (C. elegans) 	ENSMUST00000162665.1|Pard3|ENSMUSG00000025812.11|par-3 (partitioning defective 3) homolog (C. elegans) 	ENSMUST00000160766.1|Pard3|ENSMUSG00000025812.11|par-3 (partitioning defective 3) homolog (C. elegans) 	ENSMUST00000162602.1|Pard3|ENSMUSG00000025812.11|par-3 (partitioning defective 3) homolog (C. elegans) 	ENSMUST00000162531.1|Pard3|ENSMUSG00000025812.11|par-3 (partitioning defective 3) homolog (C. elegans) 	ENSMUST00000160581.1|Pard3|ENSMUSG00000025812.11|par-3 (partitioning defective 3) homolog (C. elegans) 	ENSMUST00000161355.1|Pard3|ENSMUSG00000025812.11|par-3 (partitioning defective 3) homolog (C. elegans) 	ENSMUST00000159537.1|Pard3|ENSMUSG00000025812.11|par-3 (partitioning defective 3) homolog (C. elegans)
mm10_v2_chr12_+_58211772_58211804	3.16824	Gli2	ENSMUST00000110671.2|Sstr1|ENSMUSG00000035431.4|somatostatin receptor 1 	ENSMUST00000044299.2|Sstr1|ENSMUSG00000035431.4|somatostatin receptor 1
mm10_v2_chr6_-_72789240_72789262	3.15687	Gli2	ENSMUST00000069536.5|Tcf7l1|ENSMUSG00000055799.7|transcription factor 7 like 1 (T cell specific, HMG box)
mm10_v2_chr7_-_4752972_4753094	3.14207	Gli2	ENSMUST00000183971.1|Cox6b2|ENSMUSG00000051811.8|cytochrome c oxidase subunit VIb polypeptide 2 	ENSMUST00000182173.1|Cox6b2|ENSMUSG00000051811.8|cytochrome c oxidase subunit VIb polypeptide 2 	ENSMUST00000182738.1|Cox6b2|ENSMUSG00000051811.8|cytochrome c oxidase subunit VIb polypeptide 2 	ENSMUST00000184143.1|Cox6b2|ENSMUSG00000051811.8|cytochrome c oxidase subunit VIb polypeptide 2 	ENSMUST00000182111.1|Cox6b2|ENSMUSG00000051811.8|cytochrome c oxidase subunit VIb polypeptide 2 	ENSMUST00000182048.1|Cox6b2|ENSMUSG00000051811.8|cytochrome c oxidase subunit VIb polypeptide 2 	ENSMUST00000063324.7|Cox6b2|ENSMUSG00000051811.8|cytochrome c oxidase subunit VIb polypeptide 2
mm10_v2_chr12_+_38780284_38780349	3.1222	Gli2	ENSMUST00000162563.1|Etv1|ENSMUSG00000004151.10|ets variant gene 1 	ENSMUST00000161164.1|Etv1|ENSMUSG00000004151.10|ets variant gene 1 	ENSMUST00000160996.1|Etv1|ENSMUSG00000004151.10|ets variant gene 1
mm10_v2_chr15_-_56694525_56694554	3.07358	Gli2	ENSMUST00000050544.7|Has2|ENSMUSG00000022367.7|hyaluronan synthase 2
mm10_v2_chr7_-_137314394_137314445	2.68576	Gli2	ENSMUST00000168203.1|Ebf3|ENSMUSG00000010476.7|early B cell factor 3 	ENSMUST00000106118.2|Ebf3|ENSMUSG00000010476.7|early B cell factor 3 	ENSMUST00000169486.2|Ebf3|ENSMUSG00000010476.7|early B cell factor 3 	ENSMUST00000033378.5|Ebf3|ENSMUSG00000010476.7|early B cell factor 3
mm10_v2_chr8_+_127063893_127063916	2.59706	Gli2	ENSMUST00000162309.1|Pard3|ENSMUSG00000025812.11|par-3 (partitioning defective 3) homolog (C. elegans)
mm10_v2_chr3_+_107036156_107036181	2.57213	Gli2	ENSMUST00000052718.3|Kcna3|ENSMUSG00000047959.3|potassium voltage-gated channel, shaker-related subfamily, member 3
mm10_v2_chr6_+_120666388_120666424	2.50153	Gli2	ENSMUST00000112686.1|Cecr2|ENSMUSG00000071226.5|cat eye syndrome chromosome region, candidate 2
mm10_v2_chr1_+_55406163_55406388	2.11392	Gli2	ENSMUST00000042986.8|Plcl1|ENSMUSG00000038349.9|phospholipase C-like 1
mm10_v2_chr5_-_53213447_53213473	1.84986	Gli2	ENSMUST00000031090.6|Sel1l3|ENSMUSG00000029189.6|sel-1 suppressor of lin-12-like 3 (C. elegans)
mm10_v2_chr1_-_51915901_51915958	1.76931	Gli2	ENSMUST00000018561.7|Myo1b|ENSMUSG00000018417.8|myosin IB 	ENSMUST00000114537.2|Myo1b|ENSMUSG00000018417.8|myosin IB
mm10_v2_chrX_-_9662950_9663003	1.73198	Gli2	ENSMUST00000033519.2|Dynlt3|ENSMUSG00000031176.2|dynein light chain Tctex-type 3
mm10_v2_chr1_-_51915968_51916071	1.55793	Gli2	ENSMUST00000046390.7|Myo1b|ENSMUSG00000018417.8|myosin IB
mm10_v2_chr13_+_44730726_44730838	1.53955	Gli2	ENSMUST00000173704.1|Jarid2|ENSMUSG00000038518.9|jumonji, AT rich interactive domain 2 	ENSMUST00000044608.7|Jarid2|ENSMUSG00000038518.9|jumonji, AT rich interactive domain 2 	ENSMUST00000173367.1|Jarid2|ENSMUSG00000038518.9|jumonji, AT rich interactive domain 2
mm10_v2_chr15_-_85581809_85581821	1.49623	Gli2	ENSMUST00000023015.7|Wnt7b|ENSMUSG00000022382.8|wingless-related MMTV integration site 7B
mm10_v2_chr9_-_43239816_43239842	1.43644	Gli2	ENSMUST00000034512.5|Oaf|ENSMUSG00000032014.5|OAF homolog (Drosophila)
mm10_v2_chrX_+_137049586_137049654	1.41859	Gli2	ENSMUST00000047852.7|Fam199x|ENSMUSG00000042595.7|family with sequence similarity 199, X-linked
mm10_v2_chr4_-_19708922_19709004	1.37088	Gli2	ENSMUST00000108246.2|Wwp1|ENSMUSG00000041058.9|WW domain containing E3 ubiquitin protein ligase 1
mm10_v2_chr16_+_19760902_19761054	1.35863	Gli2	ENSMUST00000119468.1|B3gnt5|ENSMUSG00000022686.8|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5
mm10_v2_chr3_-_135608221_135608290	1.33677	Gli2	ENSMUST00000132668.1|Nfkb1|ENSMUSG00000028163.11|nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105
mm10_v2_chr1_+_167001417_167001431	1.30325	Gli2	ENSMUST00000165874.1|Fam78b|ENSMUSG00000060568.8|family with sequence similarity 78, member B
mm10_v2_chr4_+_121039385_121039385	1.29536	Gli2	ENSMUST00000030372.5|Col9a2|ENSMUSG00000028626.5|collagen, type IX, alpha 2
mm10_v2_chr4_-_83486453_83486478	1.23742	Gli2	ENSMUST00000107214.2|Psip1|ENSMUSG00000028484.10|PC4 and SFRS1 interacting protein 1 	ENSMUST00000107215.2|Psip1|ENSMUSG00000028484.10|PC4 and SFRS1 interacting protein 1 	ENSMUST00000030207.8|Psip1|ENSMUSG00000028484.10|PC4 and SFRS1 interacting protein 1
mm10_v2_chr3_+_127633134_127633140	1.16927	Gli2	ENSMUST00000029587.7|Neurog2|ENSMUSG00000027967.7|neurogenin 2
mm10_v2_chr15_+_95790831_95790859	1.16544	Gli2	ENSMUST00000071874.6|Ano6|ENSMUSG00000064210.6|anoctamin 6
mm10_v2_chr4_-_83486178_83486276	1.11106	Gli2	ENSMUST00000130626.1|Psip1|ENSMUSG00000028484.10|PC4 and SFRS1 interacting protein 1
mm10_v2_chr4_-_135971894_135971929	1.08398	Gli2	ENSMUST00000105852.1|Lypla2|ENSMUSG00000028670.8|lysophospholipase 2
mm10_v2_chr5_-_24527276_24527276	1.04043	Gli2	ENSMUST00000088311.4|Gbx1|ENSMUSG00000067724.4|gastrulation brain homeobox 1
mm10_v2_chr4_-_121098190_121098250	1.03125	Gli2	ENSMUST00000058754.2|Zmpste24|ENSMUSG00000043207.4|zinc metallopeptidase, STE24
mm10_v2_chr7_-_133123160_133123185	1.02761	Gli2	ENSMUST00000166439.1|Ctbp2|ENSMUSG00000030970.10|C-terminal binding protein 2
mm10_v2_chr19_+_6975048_6975071	1.01688	Gli2	ENSMUST00000070850.6|Ppp1r14b|ENSMUSG00000056612.6|protein phosphatase 1, regulatory (inhibitor) subunit 14B
mm10_v2_chr2_+_69861638_69861686	1.01239	Gli2	ENSMUST00000112260.1|Ssb|ENSMUSG00000068882.7|Sjogren syndrome antigen B
mm10_v2_chr2_+_69861562_69861584	0.987017	Gli2	ENSMUST00000090852.4|Ssb|ENSMUSG00000068882.7|Sjogren syndrome antigen B 	ENSMUST00000166411.1|Ssb|ENSMUSG00000068882.7|Sjogren syndrome antigen B
mm10_v2_chr3_+_28781305_28781344	0.971967	Gli2	ENSMUST00000060500.7|Eif5a2|ENSMUSG00000050192.7|eukaryotic translation initiation factor 5A2
mm10_v2_chr10_-_114801364_114801364	0.965135	Gli2	ENSMUST00000061632.7|Trhde|ENSMUSG00000050663.7|TRH-degrading enzyme
mm10_v2_chr12_-_69357120_69357181	0.955382	Gli2	ENSMUST00000021368.8|Nemf|ENSMUSG00000020982.8|nuclear export mediator factor
mm10_v2_chr13_+_35741313_35741385	0.926966	Gli2	ENSMUST00000163595.2|Cdyl|ENSMUSG00000059288.7|chromodomain protein, Y chromosome-like
mm10_v2_chr10_+_83543941_83544007	0.924166	Gli2	ENSMUST00000038388.5|A230046K03Rik|ENSMUSG00000034560.5|RIKEN cDNA A230046K03 gene
mm10_v2_chr2_+_121955964_121956001	0.907002	Gli2	ENSMUST00000036647.6|Ctdspl2|ENSMUSG00000033411.10|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2
mm10_v2_chr9_+_62342449_62342473	0.880587	Gli2	ENSMUST00000156461.1|Anp32a|ENSMUSG00000032249.8|acidic (leucine-rich) nuclear phosphoprotein 32 family, member A
mm10_v2_chr4_-_126968124_126968154	0.815259	Gli2	ENSMUST00000106108.2|Zmym4|ENSMUSG00000042446.10|zinc finger, MYM-type 4
mm10_v2_chr2_+_69897255_69897303	0.804526	Gli2	ENSMUST00000131553.1|Ubr3|ENSMUSG00000044308.11|ubiquitin protein ligase E3 component n-recognin 3
mm10_v2_chr18_-_35662180_35662195	0.799534	Gli2	ENSMUST00000025209.4|Spata24|ENSMUSG00000024352.5|spermatogenesis associated 24 	ENSMUST00000096573.2|Spata24|ENSMUSG00000024352.5|spermatogenesis associated 24
mm10_v2_chr11_+_117308135_117308158	0.781556	Gli2	ENSMUST00000153668.1|Sept9|ENSMUSG00000059248.7|septin 9
mm10_v2_chr3_+_105452326_105452365	0.731325	Gli2	ENSMUST00000098761.3|Kcnd3|ENSMUSG00000040896.10|potassium voltage-gated channel, Shal-related family, member 3
mm10_v2_chr4_+_117096049_117096083	0.718627	Gli2	ENSMUST00000030443.5|Ptch2|ENSMUSG00000028681.5|patched homolog 2
mm10_v2_chr11_+_101176041_101176041	0.714342	Gli2	ENSMUST00000103109.3|Cntnap1|ENSMUSG00000017167.6|contactin associated protein-like 1
mm10_v2_chr2_+_71211706_71211794	0.710854	Gli2	ENSMUST00000112142.1|Dync1i2|ENSMUSG00000027012.9|dynein cytoplasmic 1 intermediate chain 2 	ENSMUST00000112139.1|Dync1i2|ENSMUSG00000027012.9|dynein cytoplasmic 1 intermediate chain 2 	ENSMUST00000112140.1|Dync1i2|ENSMUSG00000027012.9|dynein cytoplasmic 1 intermediate chain 2 	ENSMUST00000112138.1|Dync1i2|ENSMUSG00000027012.9|dynein cytoplasmic 1 intermediate chain 2
mm10_v2_chr4_+_36952930_36952970	0.697478	Gli2	ENSMUST00000144029.1|Gm12371|ENSMUSG00000084898.1|predicted gene 12371
mm10_v2_chr3_+_9250602_9250602	0.688058	Gli2	ENSMUST00000155203.1|Zbtb10|ENSMUSG00000069114.8|zinc finger and BTB domain containing 10
mm10_v2_chr7_-_133123312_133123377	0.671478	Gli2	ENSMUST00000171022.1|Ctbp2|ENSMUSG00000030970.10|C-terminal binding protein 2 	ENSMUST00000163601.1|Ctbp2|ENSMUSG00000030970.10|C-terminal binding protein 2 	ENSMUST00000165534.1|Ctbp2|ENSMUSG00000030970.10|C-terminal binding protein 2 	ENSMUST00000124096.1|Fgfr2|ENSMUSG00000030849.11|fibroblast growth factor receptor 2 	ENSMUST00000033269.8|Ctbp2|ENSMUSG00000030970.10|C-terminal binding protein 2
mm10_v2_chr4_-_126256226_126256370	0.654104	Gli2	ENSMUST00000122129.1|Map7d1|ENSMUSG00000028849.11|MAP7 domain containing 1 	ENSMUST00000061143.8|Map7d1|ENSMUSG00000028849.11|MAP7 domain containing 1 	ENSMUST00000106132.2|Map7d1|ENSMUSG00000028849.11|MAP7 domain containing 1
mm10_v2_chr11_+_100619217_100619283	0.653246	Gli2	ENSMUST00000107376.1|Nkiras2|ENSMUSG00000017837.6|NFKB inhibitor interacting Ras-like protein 2
mm10_v2_chr11_-_42000284_42000356	0.623212	Gli2	ENSMUST00000109292.2|Gabrg2|ENSMUSG00000020436.11|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2 	ENSMUST00000109290.1|Gabrg2|ENSMUSG00000020436.11|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2
mm10_v2_chr5_-_115300957_115300999	0.614516	Gli2	ENSMUST00000009157.3|Dynll1|ENSMUSG00000009013.4|dynein light chain LC8-type 1
mm10_v2_chr2_-_120563795_120563878	0.602589	Gli2	ENSMUST00000055241.6|Zfp106|ENSMUSG00000027288.10|zinc finger protein 106 	ENSMUST00000135625.1|Zfp106|ENSMUSG00000027288.10|zinc finger protein 106
mm10_v2_chr4_+_63215402_63215435	0.597942	Gli2	ENSMUST00000036300.6|Col27a1|ENSMUSG00000045672.9|collagen, type XXVII, alpha 1
mm10_v2_chr7_-_133123409_133123472	0.588123	Gli2	ENSMUST00000170459.1|Ctbp2|ENSMUSG00000030970.10|C-terminal binding protein 2 	ENSMUST00000166400.1|Ctbp2|ENSMUSG00000030970.10|C-terminal binding protein 2
mm10_v2_chr11_-_118909487_118909575	0.585722	Gli2	ENSMUST00000117731.1|Rbfox3|ENSMUSG00000025576.11|RNA binding protein, fox-1 homolog (C. elegans) 3 	ENSMUST00000106278.2|Rbfox3|ENSMUSG00000025576.11|RNA binding protein, fox-1 homolog (C. elegans) 3 	ENSMUST00000120061.1|Rbfox3|ENSMUSG00000025576.11|RNA binding protein, fox-1 homolog (C. elegans) 3 	ENSMUST00000017576.4|Rbfox3|ENSMUSG00000025576.11|RNA binding protein, fox-1 homolog (C. elegans) 3
mm10_v2_chr5_-_115300912_115300944	0.583241	Gli2	ENSMUST00000112090.1|Dynll1|ENSMUSG00000009013.4|dynein light chain LC8-type 1
mm10_v2_chr19_+_6047081_6047104	0.578629	Gli2	ENSMUST00000025723.8|Syvn1|ENSMUSG00000024807.11|synovial apoptosis inhibitor 1, synoviolin
mm10_v2_chr10_+_76531593_76531635	0.556741	Gli2	ENSMUST00000048678.6|Lss|ENSMUSG00000033105.6|lanosterol synthase
mm10_v2_chr12_-_31950170_31950197	0.555075	Gli2	ENSMUST00000176520.1|Hbp1|ENSMUSG00000002996.11|high mobility group box transcription factor 1
mm10_v2_chr10_+_80151154_80151375	0.551731	Gli2	ENSMUST00000146516.1|Midn|ENSMUSG00000035621.7|midnolin 	ENSMUST00000144526.1|Midn|ENSMUSG00000035621.7|midnolin
mm10_v2_chr16_-_88056176_88056176	0.54971	Gli2	ENSMUST00000072256.5|Grik1|ENSMUSG00000022935.8|glutamate receptor, ionotropic, kainate 1 	ENSMUST00000023652.8|Grik1|ENSMUSG00000022935.8|glutamate receptor, ionotropic, kainate 1 	ENSMUST00000114137.1|Grik1|ENSMUSG00000022935.8|glutamate receptor, ionotropic, kainate 1
mm10_v2_chr9_+_55149364_55149395	0.545518	Gli2	ENSMUST00000121677.1|Ube2q2|ENSMUSG00000032307.10|ubiquitin-conjugating enzyme E2Q (putative) 2
mm10_v2_chr18_+_86394952_86394968	0.523666	Gli2	ENSMUST00000058829.2|Neto1|ENSMUSG00000050321.2|neuropilin (NRP) and tolloid (TLL)-like 1
mm10_v2_chr11_+_70844745_70844975	0.522621	Gli2	ENSMUST00000076270.6|Rabep1|ENSMUSG00000020817.10|rabaptin, RAB GTPase binding effector protein 1 	ENSMUST00000179114.1|Rabep1|ENSMUSG00000020817.10|rabaptin, RAB GTPase binding effector protein 1 	ENSMUST00000100928.4|Rabep1|ENSMUSG00000020817.10|rabaptin, RAB GTPase binding effector protein 1 	ENSMUST00000177731.1|Rabep1|ENSMUSG00000020817.10|rabaptin, RAB GTPase binding effector protein 1 	ENSMUST00000108533.3|Rabep1|ENSMUSG00000020817.10|rabaptin, RAB GTPase binding effector protein 1 	ENSMUST00000081362.6|Rabep1|ENSMUSG00000020817.10|rabaptin, RAB GTPase binding effector protein 1 	ENSMUST00000178245.1|Rabep1|ENSMUSG00000020817.10|rabaptin, RAB GTPase binding effector protein 1
mm10_v2_chr11_+_95712673_95712673	0.51615	Gli2	ENSMUST00000107717.1|Zfp652|ENSMUSG00000075595.3|zinc finger protein 652
mm10_v2_chrX_+_161717055_161717073	0.505632	Gli2	ENSMUST00000112338.1|Rai2|ENSMUSG00000043518.7|retinoic acid induced 2
mm10_v2_chr3_+_36552600_36552677	0.504183	Gli2	ENSMUST00000029269.5|Exosc9|ENSMUSG00000027714.5|exosome component 9 	ENSMUST00000136890.1|Exosc9|ENSMUSG00000027714.5|exosome component 9
mm10_v2_chr11_+_29526407_29526420	0.486629	Gli2	ENSMUST00000133452.1|Mtif2|ENSMUSG00000020459.8|mitochondrial translational initiation factor 2
mm10_v2_chr11_-_100620165_100620209	0.485737	Gli2	ENSMUST00000014339.8|Dnajc7|ENSMUSG00000014195.9|DnaJ (Hsp40) homolog, subfamily C, member 7
mm10_v2_chr5_+_23850590_23850607	0.482912	Gli2	ENSMUST00000181574.1|2700038G22Rik|ENSMUSG00000097180.1|RIKEN cDNA 2700038G22 gene
mm10_v2_chr19_+_6047055_6047080	0.482255	Gli2	ENSMUST00000134667.1|Syvn1|ENSMUSG00000024807.11|synovial apoptosis inhibitor 1, synoviolin
mm10_v2_chr16_-_17132377_17132388	0.476105	Gli2	ENSMUST00000023453.7|Sdf2l1|ENSMUSG00000022769.7|stromal cell-derived factor 2-like 1
mm10_v2_chr13_+_5861489_5861501	0.464212	Gli2	ENSMUST00000000080.6|Klf6|ENSMUSG00000000078.6|Kruppel-like factor 6
mm10_v2_chr9_+_109095427_109095453	0.451894	Gli2	ENSMUST00000072093.6|Plxnb1|ENSMUSG00000053646.7|plexin B1
mm10_v2_chr2_+_130576170_130576176	0.440569	Gli2	ENSMUST00000028764.5|Oxt|ENSMUSG00000027301.7|oxytocin
mm10_v2_chr4_+_33310306_33310387	0.430253	Gli2	ENSMUST00000108153.2|Rngtt|ENSMUSG00000028274.11|RNA guanylyltransferase and 5'-phosphatase 	ENSMUST00000029942.7|Rngtt|ENSMUSG00000028274.11|RNA guanylyltransferase and 5'-phosphatase
mm10_v2_chr14_-_64949838_64949886	0.41144	Gli2	ENSMUST00000067843.3|Hmbox1|ENSMUSG00000021972.8|homeobox containing 1 	ENSMUST00000176489.1|Hmbox1|ENSMUSG00000021972.8|homeobox containing 1 	ENSMUST00000175905.1|Hmbox1|ENSMUSG00000021972.8|homeobox containing 1 	ENSMUST00000022544.7|Hmbox1|ENSMUSG00000021972.8|homeobox containing 1 	ENSMUST00000175744.1|Hmbox1|ENSMUSG00000021972.8|homeobox containing 1 	ENSMUST00000176128.1|Hmbox1|ENSMUSG00000021972.8|homeobox containing 1
mm10_v2_chr4_-_59783800_59783876	0.408135	Gli2	ENSMUST00000107526.1|Inip|ENSMUSG00000038544.8|INTS3 and NABP interacting protein 	ENSMUST00000095063.4|Inip|ENSMUSG00000038544.8|INTS3 and NABP interacting protein
mm10_v2_chr2_+_49451486_49451559	0.405189	Gli2	ENSMUST00000092123.4|Epc2|ENSMUSG00000069495.6|enhancer of polycomb homolog 2 (Drosophila)
mm10_v2_chr12_-_31950210_31950246	0.39736	Gli2	ENSMUST00000176084.1|Hbp1|ENSMUSG00000002996.11|high mobility group box transcription factor 1 	ENSMUST00000176103.1|Hbp1|ENSMUSG00000002996.11|high mobility group box transcription factor 1 	ENSMUST00000167458.2|Hbp1|ENSMUSG00000002996.11|high mobility group box transcription factor 1
mm10_v2_chr11_-_42000532_42000592	0.395768	Gli2	ENSMUST00000070735.3|Gabrg2|ENSMUSG00000020436.11|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2
mm10_v2_chr4_+_32800246_32800289	0.392376	Gli2	ENSMUST00000062802.4|Lyrm2|ENSMUSG00000045854.4|LYR motif containing 2
mm10_v2_chr6_+_67266979_67267021	0.387269	Gli2	ENSMUST00000042990.4|Serbp1|ENSMUSG00000036371.4|serpine1 mRNA binding protein 1
mm10_v2_chr9_+_108795971_108795994	0.382639	Gli2	ENSMUST00000085018.4|Ip6k2|ENSMUSG00000032599.7|inositol hexaphosphate kinase 2
mm10_v2_chr11_-_100619576_100619596	0.366827	Gli2	ENSMUST00000155152.1|Dnajc7|ENSMUSG00000014195.9|DnaJ (Hsp40) homolog, subfamily C, member 7
mm10_v2_chr14_+_64950037_64950056	0.36166	Gli2	ENSMUST00000043914.5|Ints9|ENSMUSG00000021975.7|integrator complex subunit 9
mm10_v2_chr3_+_95427575_95427671	0.358401	Gli2	ENSMUST00000181809.1|Gm4349|ENSMUSG00000097532.1|predicted gene 4349
mm10_v2_chr11_+_29526423_29526474	0.346589	Gli2	ENSMUST00000136351.1|Mtif2|ENSMUSG00000020459.8|mitochondrial translational initiation factor 2 	ENSMUST00000020749.6|Mtif2|ENSMUSG00000020459.8|mitochondrial translational initiation factor 2 	ENSMUST00000144321.1|Mtif2|ENSMUSG00000020459.8|mitochondrial translational initiation factor 2 	ENSMUST00000093239.4|Mtif2|ENSMUSG00000020459.8|mitochondrial translational initiation factor 2
mm10_v2_chr2_-_104712122_104712180	0.343375	Gli2	ENSMUST00000111118.1|Tcp11l1|ENSMUSG00000027175.4|t-complex 11 like 1 	ENSMUST00000028597.3|Tcp11l1|ENSMUSG00000027175.4|t-complex 11 like 1
mm10_v2_chr14_-_70443442_70443476	0.332088	Gli2	ENSMUST00000000793.5|Polr3d|ENSMUSG00000000776.6|polymerase (RNA) III (DNA directed) polypeptide D
mm10_v2_chr7_+_81571246_81571318	0.330248	Gli2	ENSMUST00000165460.1|Whamm|ENSMUSG00000045795.9|WAS protein homolog associated with actin, golgi membranes and microtubules
mm10_v2_chr2_+_121956411_121956480	0.326002	Gli2	ENSMUST00000110578.1|Ctdspl2|ENSMUSG00000033411.10|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2
mm10_v2_chr2_-_37703275_37703290	0.317359	Gli2	ENSMUST00000072186.5|Strbp|ENSMUSG00000026915.10|spermatid perinuclear RNA binding protein
mm10_v2_chr5_+_105519388_105519425	0.301582	Gli2	ENSMUST00000067924.6|Lrrc8c|ENSMUSG00000054720.6|leucine rich repeat containing 8 family, member C 	ENSMUST00000150981.1|Lrrc8c|ENSMUSG00000054720.6|leucine rich repeat containing 8 family, member C
mm10_v2_chr2_+_164486455_164486655	0.301052	Gli2	ENSMUST00000069385.8|Dbndd2|ENSMUSG00000017734.9|dysbindin (dystrobrevin binding protein 1) domain containing 2 	ENSMUST00000143690.1|Dbndd2|ENSMUSG00000017734.9|dysbindin (dystrobrevin binding protein 1) domain containing 2
mm10_v2_chr2_-_120609319_120609380	0.292089	Gli2	ENSMUST00000102497.3|Lrrc57|ENSMUSG00000027286.10|leucine rich repeat containing 57
mm10_v2_chr7_-_133122615_133122762	0.286324	Gli2	ENSMUST00000167218.1|Ctbp2|ENSMUSG00000030970.10|C-terminal binding protein 2
mm10_v2_chr9_-_107770945_107771007	0.277088	Gli2	ENSMUST00000183248.1|Rbm5|ENSMUSG00000032580.6|RNA binding motif protein 5 	ENSMUST00000182022.1|Rbm5|ENSMUSG00000032580.6|RNA binding motif protein 5 	ENSMUST00000035199.6|Rbm5|ENSMUSG00000032580.6|RNA binding motif protein 5 	ENSMUST00000182659.1|Rbm5|ENSMUSG00000032580.6|RNA binding motif protein 5
mm10_v2_chr2_-_120609283_120609317	0.271213	Gli2	ENSMUST00000102496.1|Lrrc57|ENSMUSG00000027286.10|leucine rich repeat containing 57
mm10_v2_chr5_-_134456227_134456263	0.269839	Gli2	ENSMUST00000111244.1|Gtf2ird1|ENSMUSG00000023079.8|general transcription factor II I repeat domain-containing 1
mm10_v2_chrX_+_161717498_161717627	0.26756	Gli2	ENSMUST00000061514.7|Rai2|ENSMUSG00000043518.7|retinoic acid induced 2
mm10_v2_chr7_-_116308241_116308376	0.261297	Gli2	ENSMUST00000183057.1|Plekha7|ENSMUSG00000045659.11|pleckstrin homology domain containing, family A member 7 	ENSMUST00000182487.1|Plekha7|ENSMUSG00000045659.11|pleckstrin homology domain containing, family A member 7 	ENSMUST00000181998.1|Plekha7|ENSMUSG00000045659.11|pleckstrin homology domain containing, family A member 7
mm10_v2_chr1_-_38664947_38665000	0.249788	Gli2	ENSMUST00000039827.7|Aff3|ENSMUSG00000037138.10|AF4/FMR2 family, member 3 	ENSMUST00000027250.7|Aff3|ENSMUSG00000037138.10|AF4/FMR2 family, member 3
mm10_v2_chr2_-_120609500_120609524	0.247408	Gli2	ENSMUST00000133612.1|Lrrc57|ENSMUSG00000027286.10|leucine rich repeat containing 57 	ENSMUST00000102498.1|Lrrc57|ENSMUSG00000027286.10|leucine rich repeat containing 57 	ENSMUST00000102499.1|Lrrc57|ENSMUSG00000027286.10|leucine rich repeat containing 57
mm10_v2_chr2_+_120609383_120609400	0.233879	Gli2	ENSMUST00000124187.1|Haus2|ENSMUSG00000027285.7|HAUS augmin-like complex, subunit 2
mm10_v2_chr1_+_97770158_97770209	0.218139	Gli2	ENSMUST00000112844.3|Gin1|ENSMUSG00000026333.8|gypsy retrotransposon integrase 1 	ENSMUST00000112842.1|Gin1|ENSMUSG00000026333.8|gypsy retrotransposon integrase 1 	ENSMUST00000027571.6|Gin1|ENSMUSG00000026333.8|gypsy retrotransposon integrase 1
mm10_v2_chr12_-_31950535_31950560	0.203336	Gli2	ENSMUST00000172314.2|Hbp1|ENSMUSG00000002996.11|high mobility group box transcription factor 1
mm10_v2_chr10_-_99126321_99126321	0.193884	Gli2	ENSMUST00000060761.5|Phxr2|ENSMUSG00000055108.5|per-hexamer repeat gene 2
mm10_v2_chr9_-_108578657_108578675	0.187459	Gli2	ENSMUST00000068700.5|Wdr6|ENSMUSG00000066357.5|WD repeat domain 6
mm10_v2_chr7_-_81454751_81454764	0.177642	Gli2	ENSMUST00000098331.3|Cpeb1|ENSMUSG00000025586.10|cytoplasmic polyadenylation element binding protein 1 	ENSMUST00000178892.1|Cpeb1|ENSMUSG00000025586.10|cytoplasmic polyadenylation element binding protein 1
mm10_v2_chr14_+_25607797_25607838	0.158671	Gli2	ENSMUST00000160229.1|Zmiz1|ENSMUSG00000007817.8|zinc finger, MIZ-type containing 1
mm10_v2_chr1_+_71652837_71652837	0.147493	Gli2	ENSMUST00000097699.2|Apol7d|ENSMUSG00000073652.4|apolipoprotein L 7d
mm10_v2_chr5_-_137786651_137786668	0.133588	Gli2	ENSMUST00000031740.9|Mepce|ENSMUSG00000029726.10|methylphosphate capping enzyme
mm10_v2_chr6_-_137649211_137649294	0.133384	Gli2	ENSMUST00000134630.1|Eps8|ENSMUSG00000015766.8|epidermal growth factor receptor pathway substrate 8 	ENSMUST00000058210.6|Eps8|ENSMUSG00000015766.8|epidermal growth factor receptor pathway substrate 8 	ENSMUST00000111878.1|Eps8|ENSMUSG00000015766.8|epidermal growth factor receptor pathway substrate 8
mm10_v2_chr15_+_41447438_41447482	0.131161	Gli2	ENSMUST00000110297.2|Oxr1|ENSMUSG00000022307.9|oxidation resistance 1 	ENSMUST00000090096.4|Oxr1|ENSMUSG00000022307.9|oxidation resistance 1
mm10_v2_chr18_-_38250157_38250212	0.120759	Gli2	ENSMUST00000181871.1|1700086O06Rik|ENSMUSG00000097080.1|RIKEN cDNA 1700086O06 gene
mm10_v2_chrX_-_95956890_95956918	0.116322	Gli2	ENSMUST00000079987.6|Las1l|ENSMUSG00000057421.6|LAS1-like (S. cerevisiae) 	ENSMUST00000113864.2|Las1l|ENSMUSG00000057421.6|LAS1-like (S. cerevisiae)
mm10_v2_chr8_-_27174623_27174651	0.103089	Gli2	ENSMUST00000033878.6|Rab11fip1|ENSMUSG00000031488.7|RAB11 family interacting protein 1 (class I) 	ENSMUST00000054212.6|Rab11fip1|ENSMUSG00000031488.7|RAB11 family interacting protein 1 (class I)
mm10_v2_chr2_-_157566319_157566361	0.0998029	Gli2	ENSMUST00000109528.2|Blcap|ENSMUSG00000067787.4|bladder cancer associated protein homolog (human) 	ENSMUST00000088494.2|Blcap|ENSMUSG00000067787.4|bladder cancer associated protein homolog (human)
mm10_v2_chr5_-_20882072_20882124	0.0983826	Gli2	ENSMUST00000118174.1|Phtf2|ENSMUSG00000039987.9|putative homeodomain transcription factor 2
mm10_v2_chr9_+_100643605_100643626	0.0855815	Gli2	ENSMUST00000041418.6|Stag1|ENSMUSG00000037286.9|stromal antigen 1
mm10_v2_chr18_+_61555689_61555751	0.0782608	Gli2	ENSMUST00000167187.1|Csnk1a1|ENSMUSG00000024576.8|casein kinase 1, alpha 1
mm10_v2_chr12_+_72085847_72085864	0.0709015	Gli2	ENSMUST00000117449.1|Jkamp|ENSMUSG00000005078.10|JNK1/MAPK8-associated membrane protein 	ENSMUST00000057257.8|Jkamp|ENSMUSG00000005078.10|JNK1/MAPK8-associated membrane protein
mm10_v2_chr18_+_80206887_80206900	0.0678342	Gli2	ENSMUST00000127234.1|Gm16286|ENSMUSG00000024571.8|predicted gene 16286
mm10_v2_chr3_+_94837533_94837567	0.0625811	Gli2	ENSMUST00000107270.2|Pogz|ENSMUSG00000038902.8|pogo transposable element with ZNF domain
mm10_v2_chr5_+_117319258_117319284	0.0604514	Gli2	ENSMUST00000111967.1|Vsig10|ENSMUSG00000066894.8|V-set and immunoglobulin domain containing 10
mm10_v2_chr9_+_13662460_13662460	0.0534891	Gli2	ENSMUST00000177755.1|Maml2|ENSMUSG00000031925.10|mastermind like 2 (Drosophila)
mm10_v2_chr7_+_121707189_121707189	0.0279829	Gli2	ENSMUST00000065310.2|1700069B07Rik|ENSMUSG00000053081.2|RIKEN cDNA 1700069B07 gene
mm10_v2_chr11_+_51619731_51619813	0.0229546	Gli2	ENSMUST00000127405.1|Nhp2|ENSMUSG00000001056.3|NHP2 ribonucleoprotein
mm10_v2_chr11_+_75532127_75532151	0.0155372	Gli2	ENSMUST00000127226.1|Slc43a2|ENSMUSG00000038178.10|solute carrier family 43, member 2
mm10_v2_chr7_-_65371210_65371287	0.0114995	Gli2	ENSMUST00000102592.3|Tjp1|ENSMUSG00000030516.8|tight junction protein 1
